Query psy15801
Match_columns 318
No_of_seqs 255 out of 1557
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 21:41:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eoq_A Putative zinc protease; 99.9 1.1E-23 3.7E-28 201.5 15.8 130 146-276 2-132 (406)
2 3hdi_A Processing protease; CA 99.9 3.5E-23 1.2E-27 198.5 15.2 132 146-277 2-134 (421)
3 1pp9_A Ubiquinol-cytochrome C 99.9 7.5E-23 2.6E-27 198.0 16.9 136 142-277 10-145 (446)
4 1hr6_A Alpha-MPP, mitochondria 99.9 2E-22 6.7E-27 197.0 16.6 135 143-277 3-137 (475)
5 3ami_A Zinc peptidase; alpha/b 99.9 2.2E-22 7.5E-27 194.6 16.3 134 144-277 5-140 (445)
6 1hr6_B Beta-MPP, mitochondrial 99.9 5.6E-22 1.9E-26 191.1 17.5 136 142-277 3-139 (443)
7 3go9_A Insulinase family prote 99.9 9.1E-22 3.1E-26 193.9 11.9 135 143-277 23-167 (492)
8 1q2l_A Protease III; hydrolase 99.9 2.5E-21 8.5E-26 203.7 14.7 135 143-277 18-154 (939)
9 1pp9_B Ubiquinol-cytochrome C 99.9 1.1E-20 3.6E-25 181.6 17.5 137 141-277 19-155 (439)
10 3amj_B Zinc peptidase inactive 99.8 1E-20 3.5E-25 181.1 15.7 134 144-277 2-142 (424)
11 2fge_A Atprep2;, zinc metallop 99.8 8.2E-20 2.8E-24 193.6 22.9 264 2-274 312-692 (995)
12 3gwb_A Peptidase M16 inactive 99.8 2.8E-20 9.6E-25 178.4 15.6 135 142-277 10-147 (434)
13 3cww_A Insulysin, insulin-degr 99.8 4.1E-20 1.4E-24 195.5 16.0 135 142-276 31-167 (990)
14 3cx5_B Cytochrome B-C1 complex 99.8 1.4E-19 4.9E-24 169.3 14.7 121 155-277 1-122 (352)
15 3s5m_A Falcilysin; M16 metallo 99.8 1.9E-17 6.3E-22 177.7 22.2 261 3-272 410-861 (1193)
16 3cx5_A Cytochrome B-C1 complex 99.8 1.7E-18 5.8E-23 165.6 10.1 122 147-275 2-127 (431)
17 3d3y_A Uncharacterized protein 99.7 5.3E-17 1.8E-21 154.7 12.7 125 149-276 6-149 (425)
18 1q2l_A Protease III; hydrolase 99.7 5.6E-17 1.9E-21 170.6 13.6 257 5-275 281-627 (939)
19 2fge_A Atprep2;, zinc metallop 99.6 5.2E-16 1.8E-20 164.4 8.8 130 144-277 36-185 (995)
20 3s5m_A Falcilysin; M16 metallo 99.6 6.5E-16 2.2E-20 165.8 8.4 134 142-277 83-251 (1193)
21 3cww_A Insulysin, insulin-degr 99.5 4.1E-14 1.4E-18 149.7 15.7 214 56-275 365-646 (990)
22 3ih6_A Putative zinc protease; 99.4 1.9E-13 6.3E-18 117.7 7.8 121 2-132 37-181 (197)
23 3eoq_A Putative zinc protease; 99.3 9.3E-12 3.2E-16 118.5 9.3 122 2-132 248-392 (406)
24 3hdi_A Processing protease; CA 99.2 5.8E-11 2E-15 113.2 11.0 122 2-132 247-392 (421)
25 1hr6_A Alpha-MPP, mitochondria 99.1 2.9E-10 9.9E-15 110.6 8.9 129 2-132 256-415 (475)
26 1pp9_B Ubiquinol-cytochrome C 99.0 1.3E-09 4.3E-14 104.1 10.1 129 2-132 265-418 (439)
27 3d3y_A Uncharacterized protein 99.0 1.9E-09 6.4E-14 102.3 10.8 118 2-128 268-405 (425)
28 3ami_A Zinc peptidase; alpha/b 99.0 1.4E-09 4.8E-14 104.5 9.2 123 3-132 262-409 (445)
29 1pp9_A Ubiquinol-cytochrome C 98.9 1.1E-09 3.9E-14 105.3 7.7 128 2-132 263-415 (446)
30 1hr6_B Beta-MPP, mitochondrial 98.9 2.8E-09 9.4E-14 102.1 9.6 131 2-132 259-415 (443)
31 3gwb_A Peptidase M16 inactive 98.9 1.7E-09 5.8E-14 103.1 8.0 123 2-132 262-408 (434)
32 3cx5_A Cytochrome B-C1 complex 98.9 3.7E-09 1.3E-13 100.5 9.2 128 2-132 245-400 (431)
33 3amj_B Zinc peptidase inactive 98.8 1E-08 3.5E-13 97.5 7.2 122 2-132 255-401 (424)
34 3go9_A Insulinase family prote 98.0 5.9E-06 2E-10 80.8 6.3 78 55-132 347-435 (492)
35 3cx5_B Cytochrome B-C1 complex 96.8 0.00026 9E-09 65.2 0.7 102 2-125 230-331 (352)
36 3ih6_A Putative zinc protease; 94.2 0.3 1E-05 40.6 9.9 114 153-272 11-134 (197)
37 1g6u_A Domain swapped dimer; d 52.8 27 0.00094 21.4 4.4 27 55-81 4-30 (48)
38 2cok_A Poly [ADP-ribose] polym 44.5 20 0.0007 27.3 3.7 80 195-279 17-103 (113)
39 1k1g_A SF1-BO isoform; splicin 41.0 62 0.0021 25.2 6.1 74 206-279 34-127 (131)
40 3l9o_A ATP-dependent RNA helic 31.6 10 0.00034 40.6 0.0 12 191-202 21-32 (1108)
41 3lh2_S 4E10_1VI7A_S0_002_N (T8 30.1 90 0.0031 21.3 5.0 46 206-251 21-66 (76)
42 2k6g_A Replication factor C su 29.8 44 0.0015 25.2 3.4 63 196-263 40-105 (109)
43 1l7b_A DNA ligase; BRCT, autos 29.7 39 0.0013 24.6 3.0 65 195-264 14-79 (92)
44 3ps5_A Tyrosine-protein phosph 29.6 11 0.00039 37.2 0.0 7 186-192 428-434 (595)
45 1914_A Signal recognition part 27.4 5.1 0.00017 34.8 -2.6 24 227-250 84-107 (232)
46 2ebu_A Replication factor C su 26.3 57 0.0019 24.8 3.5 65 194-263 28-95 (112)
47 1whz_A Hypothetical protein; a 23.7 1.7E+02 0.0057 19.6 5.3 60 202-261 5-69 (70)
48 1x4m_A FAR upstream element bi 21.9 2.2E+02 0.0075 20.2 6.6 59 190-253 25-88 (94)
49 1yoz_A Hypothetical protein AF 20.6 2.4E+02 0.0082 21.0 5.7 45 55-99 42-86 (116)
No 1
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.91 E-value=1.1e-23 Score=201.46 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=124.4
Q ss_pred cEEEEcCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEEecC
Q psy15801 146 IQSGTSYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDR 224 (318)
Q Consensus 146 ~~~~~L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~~~~ 224 (318)
++..+|+||++|++.++ ..|.++++++|++|+++|+++..|++||++||+|+||.+++..+|.+.++.+||.+++++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 57889999999999998 46999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCC
Q psy15801 225 EGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQ 276 (318)
Q Consensus 225 d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~ 276 (318)
|+|.|++++++++++.+|++++|++ +|.|++++|++++..+.+|++....+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~ 132 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDR 132 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999 99999999999999999999876443
No 2
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.90 E-value=3.5e-23 Score=198.52 Aligned_cols=132 Identities=19% Similarity=0.209 Sum_probs=126.3
Q ss_pred cEEEEcCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEEecC
Q psy15801 146 IQSGTSYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDR 224 (318)
Q Consensus 146 ~~~~~L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~~~~ 224 (318)
++..+|+||++|++.++ ..|.+++.++|++|+++|+.+..|++||++||+|+||.+++..+|.+.++.+||.+++++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 57889999999999998 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCCh
Q psy15801 225 EGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQG 277 (318)
Q Consensus 225 d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~~ 277 (318)
|++.|++++++++++.+|++|++++.+|.|++++|++++..++++++....++
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p 134 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTP 134 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCH
Confidence 99999999999999999999999999999999999999999999998865543
No 3
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.89 E-value=7.5e-23 Score=197.97 Aligned_cols=136 Identities=21% Similarity=0.266 Sum_probs=129.7
Q ss_pred CCCCcEEEEcCCCcEEEEEecCCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEE
Q psy15801 142 FSPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYAT 221 (318)
Q Consensus 142 ~~~~~~~~~L~NGlkv~~~~~~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~ 221 (318)
..|.++..+|+||++|++.+++.|.+++.++|++|+++|+.+..|++||++||+|.||.+++..+|.+.++.+||.++++
T Consensus 10 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~ 89 (446)
T 1pp9_A 10 SVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAY 89 (446)
T ss_dssp TSCCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEE
T ss_pred cccCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEE
Confidence 35788999999999999988877899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceEEEEEEecCCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCCh
Q psy15801 222 VDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQG 277 (318)
Q Consensus 222 ~~~d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~~ 277 (318)
++.|+|.|+++++.++++.+|++++|++.+|.|++++|++++..+.++++....++
T Consensus 90 t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~ 145 (446)
T 1pp9_A 90 STREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSM 145 (446)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred EcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCH
Confidence 99999999999999999999999999999999999999999999999999876654
No 4
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.89 E-value=2e-22 Score=197.02 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=128.8
Q ss_pred CCCcEEEEcCCCcEEEEEecCCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEEe
Q psy15801 143 SPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATV 222 (318)
Q Consensus 143 ~~~~~~~~L~NGlkv~~~~~~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~~ 222 (318)
.|.++..+|+||++|++.+.+.|.+++.++|++|+++|+++..|++||++||+|+||.+++..+|.+.++.+|+.+++++
T Consensus 3 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t 82 (475)
T 1hr6_A 3 TDNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTS 82 (475)
T ss_dssp TTCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence 46789999999999998877779999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEEEecCCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCCh
Q psy15801 223 DREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQG 277 (318)
Q Consensus 223 ~~d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~~ 277 (318)
++|+|.|++++++++++.+|++|+|++.+|.|++++|++++..+++|++....++
T Consensus 83 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p 137 (475)
T 1hr6_A 83 SRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKP 137 (475)
T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH
Confidence 9999999999999999999999999999999999999999999999999855544
No 5
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.88 E-value=2.2e-22 Score=194.62 Aligned_cols=134 Identities=17% Similarity=0.133 Sum_probs=127.0
Q ss_pred CCcEEEEcCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEEe
Q psy15801 144 PDIQSGTSYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATV 222 (318)
Q Consensus 144 ~~~~~~~L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~~ 222 (318)
+.++..+|+||++|++.++ ..|.+++.++|++|++.|+.+..|++||++||+|+||.+++..+|.+.++.+||.+++++
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 4678899999999999988 679999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEEEecCCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHh-hCCCCh
Q psy15801 223 DREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRL-TRPSQG 277 (318)
Q Consensus 223 ~~d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~-~~~~~~ 277 (318)
++|++.|++++++++++.+|++|++++.+|.|++++|++++..+.+|++ ....++
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p 140 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKP 140 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCH
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCCh
Confidence 9999999999999999999999999999999999999999999999998 444443
No 6
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.88 E-value=5.6e-22 Score=191.13 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=128.0
Q ss_pred CCCCcEEEEcCCCcEEEEEecCC-CEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeE
Q psy15801 142 FSPDIQSGTSYNKVKVVSVNETS-PIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYA 220 (318)
Q Consensus 142 ~~~~~~~~~L~NGlkv~~~~~~~-p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~ 220 (318)
.+|.++..+|+||++|++.+++. +.+.+.++|++|++.|+.+..|++||++||+|.||.+++..+|.+.++.+||.+++
T Consensus 3 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 3 QIPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNA 82 (443)
T ss_dssp --CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEE
Confidence 45788999999999999998854 59999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceEEEEEEecCCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCCh
Q psy15801 221 TVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQG 277 (318)
Q Consensus 221 ~~~~d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~~ 277 (318)
+++.+++.|++++++++++.+|++|++++.+|.|++++|++++..+.++++....++
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~ 139 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMY 139 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCCh
Confidence 999999999999999999999999999999999999999999999999999876654
No 7
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.86 E-value=9.1e-22 Score=193.93 Aligned_cols=135 Identities=16% Similarity=0.138 Sum_probs=123.5
Q ss_pred CCCcEEEEcCCCcEEEEEec---CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHH----HhC
Q psy15801 143 SPDIQSGTSYNKVKVVSVNE---TSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ----QAG 215 (318)
Q Consensus 143 ~~~~~~~~L~NGlkv~~~~~---~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~----~lG 215 (318)
.|.++..+|+||++|+++++ +.|++++.++|++|+++|+.++.|++||++||+|+||.+++..+|.+.++ .+|
T Consensus 23 dp~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G 102 (492)
T 3go9_A 23 DPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNER 102 (492)
T ss_dssp CTTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSS
T ss_pred CCCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcC
Confidence 37799999999999998876 35799999999999999999999999999999999999999999998665 589
Q ss_pred CeEeEEecCceEEEEEEecC---CcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCCh
Q psy15801 216 GSLYATVDREGIVYTIEAVR---KEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQG 277 (318)
Q Consensus 216 ~~l~~~~~~d~~~~~~~~l~---~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~~ 277 (318)
|.+++++++|++.|++++++ ++++.+|++|+|++.+|.|++++|++++.++..++++...++
T Consensus 103 ~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~ 167 (492)
T 3go9_A 103 PLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNI 167 (492)
T ss_dssp CCCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCT
T ss_pred CCcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999 679999999999999999999999999998888877665443
No 8
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.85 E-value=2.5e-21 Score=203.69 Aligned_cols=135 Identities=11% Similarity=0.117 Sum_probs=127.4
Q ss_pred CCCcEEEEcCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCeEeE
Q psy15801 143 SPDIQSGTSYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTH-FGIIRHVQQAGGSLYA 220 (318)
Q Consensus 143 ~~~~~~~~L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~-~~i~~~l~~lG~~l~~ 220 (318)
+..++..+|+|||+|+++++ ..|.+++.++|++|+++|+.+.+|+|||++||+|.||.+++. .+|.+.++.+||++|+
T Consensus 18 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA 97 (939)
T 1q2l_A 18 NRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNA 97 (939)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEE
T ss_pred CcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceE
Confidence 34578999999999999998 578999999999999999999999999999999999999974 6999999999999999
Q ss_pred EecCceEEEEEEecCCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCCh
Q psy15801 221 TVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQG 277 (318)
Q Consensus 221 ~~~~d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~~ 277 (318)
+|+.|+|.|++++++++++.+|++|+|++.+|.|++++|++++..+.+|++....++
T Consensus 98 ~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~ 154 (939)
T 1q2l_A 98 STAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRD 154 (939)
T ss_dssp EECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSH
T ss_pred EECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCH
Confidence 999999999999999999999999999999999999999999999999999876654
No 9
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.85 E-value=1.1e-20 Score=181.60 Aligned_cols=137 Identities=34% Similarity=0.599 Sum_probs=129.6
Q ss_pred CCCCCcEEEEcCCCcEEEEEecCCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeE
Q psy15801 141 LFSPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYA 220 (318)
Q Consensus 141 ~~~~~~~~~~L~NGlkv~~~~~~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~ 220 (318)
+..+.++..+|+||++|++.++..|.+.+.++|++|++.|+++..|++||++||+|.||.+++..+|.+.++.+|+.+++
T Consensus 19 ~~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na 98 (439)
T 1pp9_B 19 PHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSV 98 (439)
T ss_dssp C-CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEE
T ss_pred ccCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEE
Confidence 45678999999999999999887799999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceEEEEEEecCCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCCh
Q psy15801 221 TVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQG 277 (318)
Q Consensus 221 ~~~~d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~~ 277 (318)
+++.+++.|++++++++++.+|+++.+++.+|.|++++|++++..+.++++....++
T Consensus 99 ~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p 155 (439)
T 1pp9_B 99 TSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNP 155 (439)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSH
T ss_pred EecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCH
Confidence 999999999999999999999999999999999999999999999999998765544
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.85 E-value=1e-20 Score=181.10 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=127.5
Q ss_pred CCcEEEEcCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCC----CCCHHHHHHHHHHhCCeE
Q psy15801 144 PDIQSGTSYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTE----EFTHFGIIRHVQQAGGSL 218 (318)
Q Consensus 144 ~~~~~~~L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~----~~s~~~i~~~l~~lG~~l 218 (318)
+.++..+|+||++|++.++ ..|.+.+.++|++|+..|+.+..|++||++||++.||. +++..+|.+.++.+|+++
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 4678999999999999998 57999999999999999999999999999999999999 999999999999999999
Q ss_pred eEEecCceEEEEEEecCCcH--HHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCCh
Q psy15801 219 YATVDREGIVYTIEAVRKEI--GHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQG 277 (318)
Q Consensus 219 ~~~~~~d~~~~~~~~l~~~l--~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~~ 277 (318)
+++++.+++.|+++++++++ +.+|+++++++.+|.|++++|++++..+.++++....++
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p 142 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQP 142 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSH
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH
Confidence 99999999999999999998 999999999999999999999999999999999865543
No 11
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.84 E-value=8.2e-20 Score=193.56 Aligned_cols=264 Identities=12% Similarity=0.083 Sum_probs=191.7
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCC--------------Ccccccccc-Cc------hHHHHHHH
Q psy15801 2 SAKEALAFAVLKYALGAGPAKTGKNQRSTNSKGLSRTPGR--------------ESLDESHHF-SP------PQALQASI 60 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~~~k~~~~~~~l~~~~~~~~~~--------------~~~~~~a~~-~~------~~~~~~~l 60 (318)
+++|..++.||+.+||+|+ +|+|++.+.+..++ +.|.+.... .+ .+.+...+
T Consensus 312 ~~~~~~a~~vl~~~Lg~~~-------~S~L~~~l~e~gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l 384 (995)
T 2fge_A 312 DLQTQLALGFLDHLMLGTP-------ASPLRKILLESGLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTL 384 (995)
T ss_dssp CHHHHHHHHHHHHHHHSST-------TSHHHHHHHHTTSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCC-------CCHHHHHHHhcCCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 4689999999999999987 56666555433222 111111110 11 23445557
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhc--ccch--hHHHHHHHHHHHhCCCCChHHHHHHhhccCc----c----cccc
Q psy15801 61 DVVRGAGIKDADIARGKALLKRHLADSF--ETLD--STVDSVVRQAVTTGVVKSLPDLLAEVEAVSS----S----DVSA 128 (318)
Q Consensus 61 ~~l~~~~~t~~EL~raK~~lk~~~~~~l--es~~--~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~----e----dV~~ 128 (318)
+.++..+|+++||+++|++++.++.... ++.. ..+..++.++++.|++....++.+.|++|++ + +|+.
T Consensus 385 ~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 464 (995)
T 2fge_A 385 KKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSP 464 (995)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHH
Confidence 7777789999999999999999887654 2344 3467777777777788887777777777777 6 6762
Q ss_pred --cccccc----------------------------------------------------cccC--c--C---C-----C
Q psy15801 129 --KRSFAA----------------------------------------------------QPAT--K--A---L-----F 142 (318)
Q Consensus 129 --~r~~~~----------------------------------------------------~~~p--~--~---~-----~ 142 (318)
++++.. ...| + . + .
T Consensus 465 ~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~ 544 (995)
T 2fge_A 465 LIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPEALRCVPSLNLGD 544 (995)
T ss_dssp HHHHHTTTCCCEEEEEEEEETTHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTSCCCHHHHTTSCCCCGGG
T ss_pred HHHHHhcCCCceEEEEEEcCccHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChHHHHhcCCCCHhh
Confidence 111100 0001 0 0 0 0
Q ss_pred C-----CCcEEEEcCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhC-CCCCCCHHHHHHHHHHhC
Q psy15801 143 S-----PDIQSGTSYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGL-STEEFTHFGIIRHVQQAG 215 (318)
Q Consensus 143 ~-----~~~~~~~L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~-GT~~~s~~~i~~~l~~lG 215 (318)
. +......+.||++|++.++ ..|++.+.++|++|+. +.+..|+++++.+|++. ||.+++..+|.+.++...
T Consensus 545 i~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ 622 (995)
T 2fge_A 545 IPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKT 622 (995)
T ss_dssp SCSSCCCCCCEEEESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHS
T ss_pred cCccCCCCCceeeecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhc
Confidence 0 0112234589999999988 6799999999999987 45678889999888875 999999999999999554
Q ss_pred CeEeE-----EecC-----ceEEEEEEecCCcHHHHHHHHHHhhccCCCCHH-HHhhhhhhHHHHHhhCC
Q psy15801 216 GSLYA-----TVDR-----EGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPW-EVSDLTPRLKYDRLTRP 274 (318)
Q Consensus 216 ~~l~~-----~~~~-----d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~-e~~~~k~~i~~ei~~~~ 274 (318)
|.+++ +++. +.+.|++++++++++.+|+++.+++.+|.|+++ +|++++.+++.+++...
T Consensus 623 ggl~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~ 692 (995)
T 2fge_A 623 GGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRL 692 (995)
T ss_dssp SEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEeeccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 54555 5554 899999999999999999999999999999999 99999999999988764
No 12
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.84 E-value=2.8e-20 Score=178.36 Aligned_cols=135 Identities=14% Similarity=0.155 Sum_probs=126.8
Q ss_pred CCCCcEEEEcCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeE
Q psy15801 142 FSPDIQSGTSYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYA 220 (318)
Q Consensus 142 ~~~~~~~~~L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~ 220 (318)
..+.++..+|+||++|++.++ ..|.+++.++|++|+..| ++..|++||++||++.||.+++..+|.+.++.+|+.+++
T Consensus 10 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a 88 (434)
T 3gwb_A 10 RNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGN 88 (434)
T ss_dssp --CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEE
T ss_pred cCCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEe
Confidence 347899999999999999998 569999999999999999 899999999999999999999999999999999999999
Q ss_pred EecCceEEEEEEecCCc--HHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCCh
Q psy15801 221 TVDREGIVYTIEAVRKE--IGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQG 277 (318)
Q Consensus 221 ~~~~d~~~~~~~~l~~~--l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~~ 277 (318)
+++.+++.|++++++++ ++.+|+++.+++.+|.|++++|++++..+..+++....++
T Consensus 89 ~t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p 147 (434)
T 3gwb_A 89 GAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNP 147 (434)
T ss_dssp EECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred eecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH
Confidence 99999999999999998 9999999999999999999999999999999998765544
No 13
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.83 E-value=4.1e-20 Score=195.54 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=127.1
Q ss_pred CCCCcEEEEcCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCeEe
Q psy15801 142 FSPDIQSGTSYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTH-FGIIRHVQQAGGSLY 219 (318)
Q Consensus 142 ~~~~~~~~~L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~-~~i~~~l~~lG~~l~ 219 (318)
..+.++..+|+||++|+++++ ..|.+.+.++|++|++.||.+.+|++||++||+|.||++++. .+|.+.++.+||.+|
T Consensus 31 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 110 (990)
T 3cww_A 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSN 110 (990)
T ss_dssp CCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCcee
Confidence 346788999999999999998 578999999999999999999999999999999999999987 699999999999999
Q ss_pred EEecCceEEEEEEecCCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCCC
Q psy15801 220 ATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQ 276 (318)
Q Consensus 220 ~~~~~d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~~ 276 (318)
++|+.|+|.|.++++.++++.+|+++++++.+|.|++++|++++..+.+|++....+
T Consensus 111 A~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~ 167 (990)
T 3cww_A 111 AFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMN 167 (990)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999998875443
No 14
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.81 E-value=1.4e-19 Score=169.29 Aligned_cols=121 Identities=24% Similarity=0.398 Sum_probs=113.8
Q ss_pred cEEEEEecCCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEEecCceEEEEEEec
Q psy15801 155 VKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAV 234 (318)
Q Consensus 155 lkv~~~~~~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~~~~d~~~~~~~~l 234 (318)
|+|++.+...|.++++++|++|+++| +..|++||++||+|+||.+++..+|.+.++.+||.++++++++++.|+++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 57888777889999999999999997 4899999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhccCCCCHHHHh-hhhhhHHHHHhhCCCCh
Q psy15801 235 RKEIGHVHKFLASVVGKTEFRPWEVS-DLTPRLKYDRLTRPSQG 277 (318)
Q Consensus 235 ~~~l~~~l~ll~d~l~~P~f~e~e~~-~~k~~i~~ei~~~~~~~ 277 (318)
+++++.+|++|+|++.+|.|++++|+ +++..+.++++....++
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p 122 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCP 122 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999998 99999999999755544
No 15
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.77 E-value=1.9e-17 Score=177.72 Aligned_cols=261 Identities=12% Similarity=0.101 Sum_probs=185.8
Q ss_pred chhHHHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCcccccccc---------------Cc-h-------------
Q psy15801 3 AKEALAFAVLKYALGAGPAKTGKNQRSTNSKGLSRTPGRESLDESHHF---------------SP-P------------- 53 (318)
Q Consensus 3 ~~d~~al~vL~~iLG~g~~~k~~~~~~~l~~~~~~~~~~~~~~~~a~~---------------~~-~------------- 53 (318)
++|.+|+.||..|||+|+ +|+|++.+.+.+++..++.+++. .+ .
T Consensus 410 ~~d~~al~vL~~iLggg~-------sSrL~~~L~e~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~ 482 (1193)
T 3s5m_A 410 PTDYFVLLIINNLLIHTP-------ESVLYKALTDCGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEV 482 (1193)
T ss_dssp HHHHHHHHHHHHHHHSST-------TSHHHHHHHHHCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHH
T ss_pred ccHHHHHHHHHHHHCCCC-------CCHHHHHHHhcCCeeeecccccccccCCcEEEEEEecCChhhccccchhhHHHHH
Confidence 689999999999999998 78888877654443211101111 11 1
Q ss_pred -HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-cccchhH--HHHHHHHHHHhCCCCC---hHHHHHHhhccC---c
Q psy15801 54 -QALQASIDVVRGAGIKDADIARGKALLKRHLADS-FETLDST--VDSVVRQAVTTGVVKS---LPDLLAEVEAVS---S 123 (318)
Q Consensus 54 -~~~~~~l~~l~~~~~t~~EL~raK~~lk~~~~~~-les~~~~--a~~lg~~~~~~g~~~~---~~~~~~~I~~VT---~ 123 (318)
+.+..+++.|...+|+++||++++++++.++... .++..++ +..++..|++.|+|.. +.+.++++...+ +
T Consensus 483 ~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~~~ 562 (1193)
T 3s5m_A 483 EDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEP 562 (1193)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCh
Confidence 2345558888888999999999999999988764 3444443 4566767888899888 566666666653 4
Q ss_pred ccccc--cccccc----------------------------------------------------cc---cC-------c
Q psy15801 124 SDVSA--KRSFAA----------------------------------------------------QP---AT-------K 139 (318)
Q Consensus 124 edV~~--~r~~~~----------------------------------------------------~~---~p-------~ 139 (318)
.+++. .+++.. +. .| -
T Consensus 563 ~~~~~li~~yll~n~~~~~~~~~P~~~~~~~~~~~e~~~L~~~~~~ls~~~~~~i~~~~~~L~~~q~~~~~~e~l~~lP~ 642 (1193)
T 3s5m_A 563 MYLEKFVEKHFINNAHRSVILLEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPI 642 (1193)
T ss_dssp THHHHHHHHHTTTCCCEEEEEEEEESSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHTTSCC
T ss_pred HHHHHHHHHHhccCCceEEEEEEcCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCChhhHHhCCc
Confidence 56652 222210 00 01 0
Q ss_pred C----C----CCCCcEE-------------------------------------------------------------EE
Q psy15801 140 A----L----FSPDIQS-------------------------------------------------------------GT 150 (318)
Q Consensus 140 ~----~----~~~~~~~-------------------------------------------------------------~~ 150 (318)
. + .+..... ..
T Consensus 643 l~~~Di~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1193)
T 3s5m_A 643 ISISDLNKKTLEVPVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETK 722 (1193)
T ss_dssp CCGGGSCSSCCCCCCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---------------------CCT
T ss_pred CcHHHcCCCcccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 1 1111121 01
Q ss_pred cCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhC-CCCCCCHHHHHHHHHHhCCeEeEEec-----
Q psy15801 151 SYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGL-STEEFTHFGIIRHVQQAGGSLYATVD----- 223 (318)
Q Consensus 151 L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~-GT~~~s~~~i~~~l~~lG~~l~~~~~----- 223 (318)
..||++|++.+. .++++.+.++|+.|... .+..++..|+..+|.+ ||.+++..+|.+.++.++|.++++++
T Consensus 723 ~~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~ 800 (1193)
T 3s5m_A 723 YEGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKD 800 (1193)
T ss_dssp TTTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCC
T ss_pred ccCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeeccc
Confidence 138999999887 78999999999999644 4566777888777755 99999999999999999999998863
Q ss_pred -----------CceEEEEEEecCCcHHHHHHHHHHhhccCCCCHHH-HhhhhhhHHHHHhh
Q psy15801 224 -----------REGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWE-VSDLTPRLKYDRLT 272 (318)
Q Consensus 224 -----------~d~~~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e-~~~~k~~i~~ei~~ 272 (318)
.+++.+++.++.++++.+++|+.++|.+|.|++.+ +..+..++++.++.
T Consensus 801 ~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~ 861 (1193)
T 3s5m_A 801 DHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKT 861 (1193)
T ss_dssp BTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999999986 66666666665544
No 16
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.75 E-value=1.7e-18 Score=165.58 Aligned_cols=122 Identities=14% Similarity=0.174 Sum_probs=112.9
Q ss_pred EEEEcCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEEecCc
Q psy15801 147 QSGTSYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDRE 225 (318)
Q Consensus 147 ~~~~L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~~~~d 225 (318)
+..+|+||++|++.++ ..|.+.+.++|++|++.|+++..|++||++||++.||.+ ..++.+|++++++++.+
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 4578999999999998 568999999999999999999999999999999999753 24789999999999999
Q ss_pred eEEEEEEecCCcHHHHHHHHHHhhccCC---CCHHHHhhhhhhHHHHHhhCCC
Q psy15801 226 GIVYTIEAVRKEIGHVHKFLASVVGKTE---FRPWEVSDLTPRLKYDRLTRPS 275 (318)
Q Consensus 226 ~~~~~~~~l~~~l~~~l~ll~d~l~~P~---f~e~e~~~~k~~i~~ei~~~~~ 275 (318)
++.|++++++++++.+|+++.+++.+|. |++++|++++..+..+++....
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~ 127 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFED 127 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999 9999999999999999886443
No 17
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.71 E-value=5.3e-17 Score=154.74 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=115.6
Q ss_pred EEcCCCcEEEEEec-CCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCC-CHHHHHHHHHHh-CCeEeEEecCc
Q psy15801 149 GTSYNKVKVVSVNE-TSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEF-THFGIIRHVQQA-GGSLYATVDRE 225 (318)
Q Consensus 149 ~~L~NGlkv~~~~~-~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~-s~~~i~~~l~~l-G~~l~~~~~~d 225 (318)
.+|+||++|++.++ ..|.+.+.+.|++|+..|+ .|++||++||++.||.++ +..+|.+.++.+ |+.++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 78999999999998 5799999999999998765 699999999999999999 889999999998 99999999998
Q ss_pred e----EEEEEEecCC-------cHHHHHHHHHHhhccCC-----CCHHHHhhhhhhHHHHHhhCCCC
Q psy15801 226 G----IVYTIEAVRK-------EIGHVHKFLASVVGKTE-----FRPWEVSDLTPRLKYDRLTRPSQ 276 (318)
Q Consensus 226 ~----~~~~~~~l~~-------~l~~~l~ll~d~l~~P~-----f~e~e~~~~k~~i~~ei~~~~~~ 276 (318)
. +.|+++++++ +++.+|+++++++.+|. |++++|++++..+..+++....+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~ 149 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVED 149 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHS
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence 8 5999999987 69999999999999999 99999999999999999875443
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.70 E-value=5.6e-17 Score=170.57 Aligned_cols=257 Identities=13% Similarity=0.094 Sum_probs=185.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCC---------------ccccccccCc------hH---HHHHHH
Q psy15801 5 EALAFAVLKYALGAGPAKTGKNQRSTNSKGLSRTPGRE---------------SLDESHHFSP------PQ---ALQASI 60 (318)
Q Consensus 5 d~~al~vL~~iLG~g~~~k~~~~~~~l~~~~~~~~~~~---------------~~~~~a~~~~------~~---~~~~~l 60 (318)
|..++.+|+.+||++. .|+|++.+.+.+++. .|.+++...+ .+ .+...+
T Consensus 281 ~~~~~~~l~~lLg~~~-------~s~L~~~L~~~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l 353 (939)
T 1q2l_A 281 RSKTDELITYLIGNRS-------PGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYL 353 (939)
T ss_dssp GGCHHHHHHHHHHCCC-------TTSHHHHHHHTTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHhcCCC-------CCcHHHHHHHcCCchheeeccccccCCCceEEEEEEEEChhhhhhHHHHHHHHHHHH
Confidence 6678999999999886 456666554333221 1111111111 11 233446
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--c--------
Q psy15801 61 DVVRGAGIKDADIARGKALLKRHLADSF-ETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--K-------- 129 (318)
Q Consensus 61 ~~l~~~~~t~~EL~raK~~lk~~~~~~l-es~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~-------- 129 (318)
+.++..+++++||+++|+.++.++.... ++....+..++.+++ .+.+.........|++||+++|+. .
T Consensus 354 ~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~ 432 (939)
T 1q2l_A 354 NLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI-RVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNAR 432 (939)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT-TSCGGGTTTTTTCCCCCCHHHHHHHHHHCSGGGCE
T ss_pred HHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh-cCCHHHHhcCchhhhccCHHHHHHHHHhcCHHHcE
Confidence 7777778999999999999999998876 667778888987754 333333334455688888888862 0
Q ss_pred --------------cccccc-----------------------ccCcC-------CC-------CCCcEEEEcCCCcEEE
Q psy15801 130 --------------RSFAAQ-----------------------PATKA-------LF-------SPDIQSGTSYNKVKVV 158 (318)
Q Consensus 130 --------------r~~~~~-----------------------~~p~~-------~~-------~~~~~~~~L~NGlkv~ 158 (318)
++|..+ ..|.. +. ...+...+|+||++|+
T Consensus 433 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~p~~~~l~ng~~v~ 512 (939)
T 1q2l_A 433 IWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVV 512 (939)
T ss_dssp EEEECTTCCCCEECTTTCCEEEEEECCHHHHHHHHHHHHTCCCCCCCCCTTCCCCCCCCCCSSCCSSCEEEEEETTEEEE
T ss_pred EEEEcCCCCCCcccceeCCeeeeeeCCHHHHHHHhccCccccccCCCCCcCCCcCcccccCcCCCCCCEEEEECCCceEe
Confidence 001000 00100 00 1123567899999999
Q ss_pred EEecC---C-CEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEEecCceEEEEEEec
Q psy15801 159 SVNET---S-PIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAV 234 (318)
Q Consensus 159 ~~~~~---~-p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~~~~d~~~~~~~~l 234 (318)
+.++. . |.+.|.+.|.+|...++....|+++++.+|+..|+..+ + -..+..|..+++++ .+.+.+++++.
T Consensus 513 ~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~---~--~~~~l~G~~~~~~~-~~g~~~~~~g~ 586 (939)
T 1q2l_A 513 YAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL---S--NQASVGGISFSTNA-NNGLMVNANGY 586 (939)
T ss_dssp EECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH---H--HHHHHTTEEEEEEE-SSEEEEEEEEE
T ss_pred ecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH---h--hHHHHcCcEEEEee-CCcEEEEEEcc
Confidence 99874 3 49999999999999988778899999999999886544 2 33455677888888 99999999999
Q ss_pred CCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCC
Q psy15801 235 RKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPS 275 (318)
Q Consensus 235 ~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~ 275 (318)
+++++.+|+++.+++.+|.|++++|++++++++.+++....
T Consensus 587 ~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~ 627 (939)
T 1q2l_A 587 TQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEK 627 (939)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSC
T ss_pred cHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999987643
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.62 E-value=5.2e-16 Score=164.42 Aligned_cols=130 Identities=14% Similarity=0.065 Sum_probs=111.6
Q ss_pred CCcEEEEcCCCcEEEEEecCCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHH--HHhCCeEeEE
Q psy15801 144 PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHV--QQAGGSLYAT 221 (318)
Q Consensus 144 ~~~~~~~L~NGlkv~~~~~~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l--~~lG~~l~~~ 221 (318)
+.++...|+||++|++++++.... +|.+|++.|+.+..|+|||++||+|.||.+++..++...+ +.+|+.+|++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 345668899999999999854322 3677888999999999999999999999999987754444 4579999999
Q ss_pred ecCceEEEEEEec-CCcHHHHHHHHHHhhccCCC--CHHHHhhh---------------hhhHHHHHhhCCCCh
Q psy15801 222 VDREGIVYTIEAV-RKEIGHVHKFLASVVGKTEF--RPWEVSDL---------------TPRLKYDRLTRPSQG 277 (318)
Q Consensus 222 ~~~d~~~~~~~~l-~~~l~~~l~ll~d~l~~P~f--~e~e~~~~---------------k~~i~~ei~~~~~~~ 277 (318)
|+.|+|.|.+.+. .++++.+|++++|++.+|.| ++++|+++ +.++.+|++...+++
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p 185 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQP 185 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCH
Confidence 9999999999886 56999999999999999999 99999999 899999999876543
No 20
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.60 E-value=6.5e-16 Score=165.81 Aligned_cols=134 Identities=14% Similarity=0.070 Sum_probs=114.4
Q ss_pred CCCCcEEEEcCCCcEEEEEecCCC-EEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHH--hCCeE
Q psy15801 142 FSPDIQSGTSYNKVKVVSVNETSP-IARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQ--AGGSL 218 (318)
Q Consensus 142 ~~~~~~~~~L~NGlkv~~~~~~~p-~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~--lG~~l 218 (318)
..+.++...|+||++|++++++.+ .+. .+|.+|.+.++.+..|++|+++||+|+||.+++..++...++. +|+.+
T Consensus 83 ~~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~l 160 (1193)
T 3s5m_A 83 KMTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHL 160 (1193)
T ss_dssp TEEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEE
T ss_pred cccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceE
Confidence 446778899999999999988543 222 3456677778999999999999999999999999999999999 99999
Q ss_pred eEEecCceEEEEEEecC-CcHHHHHHHHHHhhccCCCCHHH--Hhhh-----------------------------hhhH
Q psy15801 219 YATVDREGIVYTIEAVR-KEIGHVHKFLASVVGKTEFRPWE--VSDL-----------------------------TPRL 266 (318)
Q Consensus 219 ~~~~~~d~~~~~~~~l~-~~l~~~l~ll~d~l~~P~f~e~e--~~~~-----------------------------k~~i 266 (318)
|++|+.|+|.|.++++. ++|+.+|++++|++.+|.|++++ |.++ +.++
T Consensus 161 NA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV 240 (1193)
T 3s5m_A 161 NAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIV 240 (1193)
T ss_dssp EEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHH
T ss_pred EeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHH
Confidence 99999999999999887 89999999999999999977665 5433 5788
Q ss_pred HHHHhhCCCCh
Q psy15801 267 KYDRLTRPSQG 277 (318)
Q Consensus 267 ~~ei~~~~~~~ 277 (318)
.+|++...+++
T Consensus 241 ~~E~k~~~~~p 251 (1193)
T 3s5m_A 241 YNEMKGALSSP 251 (1193)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHhhCCH
Confidence 99998776554
No 21
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.55 E-value=4.1e-14 Score=149.65 Aligned_cols=214 Identities=10% Similarity=0.010 Sum_probs=160.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cc--
Q psy15801 56 LQASIDVVRGAGIKDADIARGKALLKRHLADS-FETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KR-- 130 (318)
Q Consensus 56 ~~~~l~~l~~~~~t~~EL~raK~~lk~~~~~~-les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r-- 130 (318)
+...++.|+..+++++|++++++.....+... .++..+++..++.++ ....+.....+...|++||++||+. +.
T Consensus 365 i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~~~t~~~i~~~~~~l~ 443 (990)
T 3cww_A 365 MFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGIL-HYYPLEEVLTAEYLLEEFRPDLIEMVLDKLR 443 (990)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHT-TTSCGGGTTTTTTCCCCCCHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHH-hhCCHHHHhccchhhhcCCHHHHHHHHHhcC
Confidence 34447777778999999999999888887653 456777888887554 3333333333346688889888862 10
Q ss_pred ----------------------ccccc------------------c-----cCc----C---CC--------CCCcEEEE
Q psy15801 131 ----------------------SFAAQ------------------P-----ATK----A---LF--------SPDIQSGT 150 (318)
Q Consensus 131 ----------------------~~~~~------------------~-----~p~----~---~~--------~~~~~~~~ 150 (318)
+|... . .|. + +. +..+...+
T Consensus 444 ~~~~~~~~~~p~~~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ip~~~~~~~~~~~~~~~p~~~~ 523 (990)
T 3cww_A 444 PENVRVAIVSKSFEGKTDRTEEWYGTQYKQEAIPDAVIAKWQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYPALIK 523 (990)
T ss_dssp GGGCEEEEECGGGTTCCCEECTTTCCEEEEEECCHHHHHHHHTCCCCTTCCCCCCCTTCCCCCCCCCCCTTCCSSCEEEE
T ss_pred HhHEEEEEEcCCCCCCcCcccceeCceeeeecCCHHHHHHhhcCCCCccccCCCCCCCCCcccccccCCCCCCCCCeeee
Confidence 00000 0 011 0 11 11235677
Q ss_pred cCCCcEEEEEecC---CCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEEecCceE
Q psy15801 151 SYNKVKVVSVNET---SPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGI 227 (318)
Q Consensus 151 L~NGlkv~~~~~~---~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~~~~d~~ 227 (318)
+.||++|++.++. .|...+.+.+.+|...+++...|+++++..|+..+ ++..++...+ .|.+++++++.+.+
T Consensus 524 ~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~~~~~~~~l--~G~~~~~~~~~~~~ 598 (990)
T 3cww_A 524 DTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LNEYAYAAEL--AGLSYDLQNTIYGM 598 (990)
T ss_dssp ECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HHHHHHHHHH--TTEEEEEEEETTEE
T ss_pred cCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HHHhhhHHHh--CCeEEEEEEcCCeE
Confidence 8999999999874 57888888888877777777889999999998864 4666776666 58889999999999
Q ss_pred EEEEEecCCcHHHHHHHHHHhhccCCCCHHHHhhhhhhHHHHHhhCCC
Q psy15801 228 VYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPS 275 (318)
Q Consensus 228 ~~~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~i~~ei~~~~~ 275 (318)
.++++++.++++.+|+++.+++.+|.|+++.|++++.+++.+++....
T Consensus 599 ~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~ 646 (990)
T 3cww_A 599 YLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRA 646 (990)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGG
T ss_pred EEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999887654
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.43 E-value=1.9e-13 Score=117.66 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=94.3
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCcccccccc---------------Cc----hHH---HHHH
Q psy15801 2 SAKEALAFAVLKYALGAGPAKTGKNQRSTNSKGLSRTPGRESLDESHHF---------------SP----PQA---LQAS 59 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~~~k~~~~~~~l~~~~~~~~~~~~~~~~a~~---------------~~----~~~---~~~~ 59 (318)
+++|.+++.||+.|||+|. +|+|++.+.+..++ |++.+++ .+ ..+ +...
T Consensus 37 ~~~d~~al~vl~~iLggg~-------sSrL~~~lre~gl~--y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~ 107 (197)
T 3ih6_A 37 GSPDFVGLDLAATILADTP-------SSRLYHALVPTKLA--SGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTAT 107 (197)
T ss_dssp TSTTHHHHHHHHHHHHSST-------TSHHHHHHTTTTSC--SEEEEEEETTSSSCEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHcCCC-------CchHHHHHHhcCce--EEEEeccccccCCeEEEEEEEECCCCCHHHHHHHHHHH
Confidence 5789999999999999987 67888777654332 2222222 11 222 3333
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cccc
Q psy15801 60 IDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KRSF 132 (318)
Q Consensus 60 l~~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r~~ 132 (318)
++.|+..++|++||+|||++++.++.+++++..+++..++.+.+ .|++....+++++|++||++||+. ++++
T Consensus 108 l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~-~g~~~~~~~~~~~i~~vT~~dv~~~a~~~l 181 (197)
T 3ih6_A 108 LESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFLQRDRVREAKLDDVQRAAVAYL 181 (197)
T ss_dssp HHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCTTHHHHHHHHHHTCCHHHHHHHHHHHS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 55555678999999999999999999999999999999997766 488889999999999999999983 5555
No 23
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.27 E-value=9.3e-12 Score=118.48 Aligned_cols=122 Identities=24% Similarity=0.219 Sum_probs=98.1
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCcccccccc---------------Cc---h---HHHHHHH
Q psy15801 2 SAKEALAFAVLKYALGAGPAKTGKNQRSTNSKGLSRTPGRESLDESHHF---------------SP---P---QALQASI 60 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~~~k~~~~~~~l~~~~~~~~~~~~~~~~a~~---------------~~---~---~~~~~~l 60 (318)
++||.+++.||+.|||+|. +|+|.+.+.+..++ |++.+++ .+ . +.+...+
T Consensus 248 ~~~d~~~l~vl~~iLgg~~-------~srL~~~lre~gl~--y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l 318 (406)
T 3eoq_A 248 QEEARFPGQVLAHLLGEEG-------SGRLHFALVDKGLA--EVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEEL 318 (406)
T ss_dssp TCTTHHHHHHHHHHHHCTT-------TSHHHHHTTTTTSE--EEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhCCCc-------chHHHHHHHHcCCe--eEEEEEecccCCceEEEEEEEeCcchHHHHHHHHHHHH
Confidence 5789999999999999987 57787777663222 2222221 12 2 2344557
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cccc
Q psy15801 61 DVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KRSF 132 (318)
Q Consensus 61 ~~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r~~ 132 (318)
+.++.+++|++||++||++++.++.+++|+..+++..++.+++..|++.++.+++++|++||++||+. ++++
T Consensus 319 ~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l 392 (406)
T 3eoq_A 319 DRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGF 392 (406)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 77777899999999999999999999999999999999999988899999999999999999999983 5554
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.20 E-value=5.8e-11 Score=113.24 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=97.1
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCCCCcccccccCC-CCCCcccccccc---------------Cc---h---HHHHHH
Q psy15801 2 SAKEALAFAVLKYALGAGPAKTGKNQRSTNSKGLSRT-PGRESLDESHHF---------------SP---P---QALQAS 59 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~~~k~~~~~~~l~~~~~~~-~~~~~~~~~a~~---------------~~---~---~~~~~~ 59 (318)
+++|.+++.||+.+||+|. +|+|.+.+.+. +++ |++.+++ .+ . +.+...
T Consensus 247 ~~~d~~~l~vl~~iLgg~~-------~srL~~~lRe~~gla--y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~ 317 (421)
T 3hdi_A 247 GDKDVYALVLLNNVLGGSM-------SSRLFQDIREKRGLC--YSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQET 317 (421)
T ss_dssp TCTTHHHHHHHHHHHTSSS-------SSHHHHHHTTTTCCC--SCEEEEEEECSSCEEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhCCCc-------ccHHHHHHHHhcCCE--EEEEEeecccCCCceEEEEEEeCHHHHHHHHHHHHHH
Confidence 5789999999999999987 56777766543 222 2222221 11 2 234455
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cccc
Q psy15801 60 IDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KRSF 132 (318)
Q Consensus 60 l~~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r~~ 132 (318)
++.++..++|++||++||+.+..++..++++...++..++.+.+..|.+.+..+++++|++||++||+. .+++
T Consensus 318 l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~ 392 (421)
T 3hdi_A 318 TSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILL 392 (421)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHc
Confidence 777778899999999999999999999999999999999988888899899999999999999999983 5555
No 25
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.06 E-value=2.9e-10 Score=110.59 Aligned_cols=129 Identities=20% Similarity=0.255 Sum_probs=96.1
Q ss_pred CchhHHHHHHHHHHhcCCC-CCCCCCC---CCcccccccCC-CCCCccccc---------ccc------Cc---hHHHHH
Q psy15801 2 SAKEALAFAVLKYALGAGP-AKTGKNQ---RSTNSKGLSRT-PGRESLDES---------HHF------SP---PQALQA 58 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~-~~k~~~~---~~~l~~~~~~~-~~~~~~~~~---------a~~------~~---~~~~~~ 58 (318)
+++|.+++.||+.|||+|+ ++.+++| .++|.+.+.+. .++ |++. +++ .+ .++++.
T Consensus 256 ~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~--y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~ 333 (475)
T 1hr6_A 256 DHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFV--ENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEV 333 (475)
T ss_dssp TCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSE--EEEEEEEEECSSCEEEEEEEEECGGGHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCe--eEEEEeccccCCCceEEEEEEeCHHHHHHHHHH
Confidence 4689999999999999876 4555554 46777666442 222 2222 221 12 334444
Q ss_pred HHH---HHHc---CCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cc
Q psy15801 59 SID---VVRG---AGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KR 130 (318)
Q Consensus 59 ~l~---~l~~---~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r 130 (318)
++. .+.. +++|++||++||++++.++.+.+++....++.++++++.+|.+....+++++|++||++||+. .+
T Consensus 334 ~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~ 413 (475)
T 1hr6_A 334 IAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEM 413 (475)
T ss_dssp HHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHH
Confidence 444 4444 579999999999999999999999999999999988888898888999999999999999983 45
Q ss_pred cc
Q psy15801 131 SF 132 (318)
Q Consensus 131 ~~ 132 (318)
++
T Consensus 414 ~l 415 (475)
T 1hr6_A 414 IF 415 (475)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 26
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.99 E-value=1.3e-09 Score=104.13 Aligned_cols=129 Identities=24% Similarity=0.338 Sum_probs=97.5
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCC-CCcccccccCC-CCCCcccccccc---------------Cc---hHHHH---H
Q psy15801 2 SAKEALAFAVLKYALGAGPAKTGKNQ-RSTNSKGLSRT-PGRESLDESHHF---------------SP---PQALQ---A 58 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~~~k~~~~-~~~l~~~~~~~-~~~~~~~~~a~~---------------~~---~~~~~---~ 58 (318)
+++|.+++.||+.|||+|++..++.| .++|.+.+.+. .++ |++.+.+ .+ .++++ .
T Consensus 265 ~~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~--Y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ 342 (439)
T 1pp9_B 265 GSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQP--FDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYN 342 (439)
T ss_dssp TSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSC--EEEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCc--eEEEEeeccccccceEEEEEEeCHHHHHHHHHHHHH
Confidence 46899999999999999875445545 67888766532 222 2222211 11 23333 3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cccc
Q psy15801 59 SIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KRSF 132 (318)
Q Consensus 59 ~l~~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r~~ 132 (318)
.+..+...++|++||+++|+.+..++...+++....+..++.+.+..|.+.+..++.+.|++||++||+. .+++
T Consensus 343 ~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~ 418 (439)
T 1pp9_B 343 QVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFV 418 (439)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4666666789999999999999999999999999999999988877788888999999999999999983 4444
No 27
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=98.98 E-value=1.9e-09 Score=102.27 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=90.5
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCCCCcccccccCC-CCCCccccccc-------------cCc---hH---HHHHHHH
Q psy15801 2 SAKEALAFAVLKYALGAGPAKTGKNQRSTNSKGLSRT-PGRESLDESHH-------------FSP---PQ---ALQASID 61 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~~~k~~~~~~~l~~~~~~~-~~~~~~~~~a~-------------~~~---~~---~~~~~l~ 61 (318)
+++|.+++.||+.|||+|. .++|.+.+.+. .++ |++.+. ..+ .+ .+...+.
T Consensus 268 ~~~~~~~~~vl~~iLg~~~-------~s~L~~~lRe~~gla--Y~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~ 338 (425)
T 3d3y_A 268 GDSYYFALQVFNGIFGGFP-------HSKLFMNVREKEHLA--YYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELE 338 (425)
T ss_dssp TSTTHHHHHHHHHHHTTST-------TSHHHHHTTTTSCCC--SEEEEEEETTTTEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhCCCh-------hhHHHHHHHHhcCeE--EEEeccccccCceEEEEEecCHhhHHHHHHHHHHHHH
Confidence 5789999999999999987 56777666543 222 222211 122 22 3444466
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc
Q psy15801 62 VVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA 128 (318)
Q Consensus 62 ~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~ 128 (318)
.+..++++++||+++|+.+..++...+++...++..++...+..|.+....++.++|++||++||+.
T Consensus 339 ~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~ 405 (425)
T 3d3y_A 339 NIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQE 405 (425)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHH
Confidence 7777889999999999999999999999999999998866655487778999999999999999983
No 28
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=98.96 E-value=1.4e-09 Score=104.55 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=91.9
Q ss_pred chhHHHHHHHHHHhcCCCCCCCCCCCCcccccccCCC-C---------------CCccccccccCc----hH---HHHHH
Q psy15801 3 AKEALAFAVLKYALGAGPAKTGKNQRSTNSKGLSRTP-G---------------RESLDESHHFSP----PQ---ALQAS 59 (318)
Q Consensus 3 ~~d~~al~vL~~iLG~g~~~k~~~~~~~l~~~~~~~~-~---------------~~~~~~~a~~~~----~~---~~~~~ 59 (318)
++|.+++.||+.|||+|. +|+|.+.+.+.. + .+.|.+++...+ .+ .+...
T Consensus 262 ~~~~~~~~vl~~iLg~~~-------~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~ 334 (445)
T 3ami_A 262 SRDAYALEILAAVLDGYD-------GARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQ 334 (445)
T ss_dssp CHHHHHHHHHHHHHHSST-------TCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHcCCc-------chHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHHHH
Confidence 789999999999999987 455555443211 1 111111111122 22 34444
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cccc
Q psy15801 60 IDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KRSF 132 (318)
Q Consensus 60 l~~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r~~ 132 (318)
+..|+..+++++||++||++++.++.+.+++..+++..++.+++..+.+.++.++.+.|++||++||+. ++++
T Consensus 335 l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l 409 (445)
T 3ami_A 335 VRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLL 409 (445)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHHHHHHHc
Confidence 777777899999999999999999999999999999999987776667888999999999999999983 4554
No 29
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.94 E-value=1.1e-09 Score=105.27 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=94.1
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCC--CCCCcccccccCCCCCCccccc---------ccc------Cc---hH---HHHH
Q psy15801 2 SAKEALAFAVLKYALGAGPAKTGK--NQRSTNSKGLSRTPGRESLDES---------HHF------SP---PQ---ALQA 58 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~~~k~~--~~~~~l~~~~~~~~~~~~~~~~---------a~~------~~---~~---~~~~ 58 (318)
+++|.+++.||+.+||++.++.++ ..+|+|.+.+.+..++ |++. +++ .+ .+ .+..
T Consensus 263 ~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~gla--y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~ 340 (446)
T 1pp9_A 263 AHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLC--QSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQG 340 (446)
T ss_dssp TCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCC--SEEEEEEEECSSCEEEEEEEEECTTSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCe--EEEEEecccCCCCeEEEEEEEECHHHHHHHHHHHHH
Confidence 478999999999999975432221 1267777765432222 1111 211 11 23 3444
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cccc
Q psy15801 59 SIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KRSF 132 (318)
Q Consensus 59 ~l~~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r~~ 132 (318)
.++.+.. ++|++||++||+.+..++...+++..++++.++.+++.+|.+....+++++|++||++||+. ++++
T Consensus 341 ~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~ 415 (446)
T 1pp9_A 341 QWMRLCT-SATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYF 415 (446)
T ss_dssp HHHHHHH-HCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHhc-cCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCHHHHHHHHHHHc
Confidence 4666666 59999999999999999999999999999999988878898888999999999999999983 5554
No 30
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.92 E-value=2.8e-09 Score=102.13 Aligned_cols=131 Identities=21% Similarity=0.203 Sum_probs=94.4
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCC--CCCCcccccccCC-CCC-------------CccccccccC--c---hH---HHH
Q psy15801 2 SAKEALAFAVLKYALGAGPAKTGK--NQRSTNSKGLSRT-PGR-------------ESLDESHHFS--P---PQ---ALQ 57 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~~~k~~--~~~~~l~~~~~~~-~~~-------------~~~~~~a~~~--~---~~---~~~ 57 (318)
+++|.+++.||+.+||++++..++ ..+|+|.+.+.+. .++ +.|.+++... + .+ .+.
T Consensus 259 ~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 338 (443)
T 1hr6_B 259 SAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEIL 338 (443)
T ss_dssp TCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEEEecCChhHHHHHHHHHH
Confidence 578999999999999985432211 1256777655422 111 1112222112 3 22 344
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cccc
Q psy15801 58 ASIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KRSF 132 (318)
Q Consensus 58 ~~l~~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r~~ 132 (318)
..++.|+.+++|++||++||+.+..++...+++..+++..++.+++.+|.+....+++++|++||++||+. .+++
T Consensus 339 ~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l 415 (443)
T 1hr6_B 339 KEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRL 415 (443)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44667777789999999999999999999999999999999987777888888899999999999999983 4544
No 31
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.91 E-value=1.7e-09 Score=103.07 Aligned_cols=123 Identities=13% Similarity=0.115 Sum_probs=89.0
Q ss_pred CchhHHHHHHHHHHhcCC-CCCCCCCCCCcccccccCCCCCCcccccccc---------------Cc------hHHHHHH
Q psy15801 2 SAKEALAFAVLKYALGAG-PAKTGKNQRSTNSKGLSRTPGRESLDESHHF---------------SP------PQALQAS 59 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g-~~~k~~~~~~~l~~~~~~~~~~~~~~~~a~~---------------~~------~~~~~~~ 59 (318)
+++|.+++.||+.|||+| . .++|.+.+.+..+.. |++.+.+ .+ .+.+...
T Consensus 262 ~~~d~~~l~vl~~iLg~~~~-------~s~L~~~lRe~~gl~-Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~ 333 (434)
T 3gwb_A 262 DDPDYAAVSLGNQILGGGGF-------GTRLMSEVREKRGLT-YGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDV 333 (434)
T ss_dssp TCTTHHHHHHHHHHHHSSSS-------CSHHHHHHTTTTCCC-SCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHhCCCcc-------cchhHHHHHhhcCCc-ceeeeecccCCCceeEEEEEecchhhHHHHHHHHHHH
Confidence 578999999999999987 4 467776665432111 2222222 11 2234445
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cccc
Q psy15801 60 IDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KRSF 132 (318)
Q Consensus 60 l~~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r~~ 132 (318)
++.+..++++++||+++|+.+..++...+++...++..++...+....+....+++++|++||++||+. ++++
T Consensus 334 l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l 408 (434)
T 3gwb_A 334 FAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHL 408 (434)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 777777789999999999999999999999999999999876554445667899999999999999993 4444
No 32
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.89 E-value=3.7e-09 Score=100.50 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=95.4
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCC--CCcccccccCCCCCCccccccc---------c------Cc----hH---HHH
Q psy15801 2 SAKEALAFAVLKYALGAGPAKTGKNQ--RSTNSKGLSRTPGRESLDESHH---------F------SP----PQ---ALQ 57 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~~~k~~~~--~~~l~~~~~~~~~~~~~~~~a~---------~------~~----~~---~~~ 57 (318)
+++|.+++.||+.|||+++...|+.+ +++|.+.+-+..++ |++.+. + .+ .+ .+.
T Consensus 245 ~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~--y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ 322 (431)
T 3cx5_A 245 NSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLC--DNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTL 322 (431)
T ss_dssp TCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCC--SEEEEEEEECSSCEEEEEEEEESCTTCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCce--eeEeEeecccCCCceEEEEEeeCchhhHHHHHHHHH
Confidence 46899999999999998765444432 46777666543322 222211 1 11 22 344
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCcccccc--cccc
Q psy15801 58 ASIDVVRGAGIKDADIARGKALLKRHLAD--SFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSA--KRSF 132 (318)
Q Consensus 58 ~~l~~l~~~~~t~~EL~raK~~lk~~~~~--~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~edV~~--~r~~ 132 (318)
..+..+.. ++|++||+++|+.+..++.. .+++....+..++.+++..|.+....++++.|++||++||+. .+++
T Consensus 323 ~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l 400 (431)
T 3cx5_A 323 KQWNRLTI-SVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRL 400 (431)
T ss_dssp HHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 44777777 89999999999999999999 999999999999977777888888899999999999999983 4444
No 33
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.75 E-value=1e-08 Score=97.48 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=87.8
Q ss_pred CchhHHHHHHHHHHhcCC-CCCCCCCCCCcccccccCCCCCCccccccc---------c------Cc---hH---HHHHH
Q psy15801 2 SAKEALAFAVLKYALGAG-PAKTGKNQRSTNSKGLSRTPGRESLDESHH---------F------SP---PQ---ALQAS 59 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g-~~~k~~~~~~~l~~~~~~~~~~~~~~~~a~---------~------~~---~~---~~~~~ 59 (318)
+++|.+++.||+.|||+| . .++|.+.+.+..+.. |++.+. + .+ .+ .+...
T Consensus 255 ~~~~~~~~~vl~~iLg~~~~-------~srL~~~lR~~~gl~-y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~ 326 (424)
T 3amj_B 255 GDPDFFPLVVGNYALGGGGF-------ESRLMKEIRDKRGLS-YGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDT 326 (424)
T ss_dssp TCTTHHHHHHHHHHHTTSGG-------GSHHHHHHTTTTCCE-EEEEEEECCBSSCEEEEEEEEEESTTHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHhCCCCc-------cchhHHHHHHhCCeE-EEeeeeeccCCCceeEEEEEEeCcccHHHHHHHHHHH
Confidence 578999999999999987 4 456665554322110 221111 1 11 23 34444
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhCC-CCChHHHHHHhhccCcccccc--cccc
Q psy15801 60 IDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGV-VKSLPDLLAEVEAVSSSDVSA--KRSF 132 (318)
Q Consensus 60 l~~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg~~~~~~g~-~~~~~~~~~~I~~VT~edV~~--~r~~ 132 (318)
+..++..++|++||+++|+.+..++...+++...++..++... ..|. +....++.+.|++||++||+. .+++
T Consensus 327 l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l 401 (424)
T 3amj_B 327 LDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIG-YYGLPLDYLDHYTERVQAVTVEQVREAFARHV 401 (424)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHH-HTTCCTTTTTSHHHHHHTCCHHHHHHHHHHHC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHH-HcCCChhHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 6677677899999999999999999999999999999998544 4454 566789999999999999983 4444
No 34
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=98.00 E-value=5.9e-06 Score=80.83 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHhCCCCChHHH---H-HHhhccCccc
Q psy15801 55 ALQASIDVVRGAGIKDADIARGKALLKRHLADSFET-----LDSTVDSVVRQAVTTGVVKSLPDL---L-AEVEAVSSSD 125 (318)
Q Consensus 55 ~~~~~l~~l~~~~~t~~EL~raK~~lk~~~~~~les-----~~~~a~~lg~~~~~~g~~~~~~~~---~-~~I~~VT~ed 125 (318)
.+...+++|+..+||++||+|+|+++..++...+++ ...+++.+.+..+.......+.++ + ++|++||++|
T Consensus 347 ~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ed 426 (492)
T 3go9_A 347 FVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAE 426 (492)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHH
Confidence 455557778778999999999999999999998775 566788877666554444455553 3 4599999999
Q ss_pred ccc--cccc
Q psy15801 126 VSA--KRSF 132 (318)
Q Consensus 126 V~~--~r~~ 132 (318)
|++ ++++
T Consensus 427 V~~~a~~~l 435 (492)
T 3go9_A 427 LNRELKQQL 435 (492)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 983 5554
No 35
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=96.77 E-value=0.00026 Score=65.15 Aligned_cols=102 Identities=15% Similarity=0.051 Sum_probs=59.4
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCccccccccCchHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15801 2 SAKEALAFAVLKYALGAGPAKTGKNQRSTNSKGLSRTPGRESLDESHHFSPPQALQASIDVVRGAGIKDADIARGKALLK 81 (318)
Q Consensus 2 ~~~d~~al~vL~~iLG~g~~~k~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~l~~~~~t~~EL~raK~~lk 81 (318)
+++|.+++.||+.|||+ .+.-..|.. .+.........+.|.+.+.....+.+..++.++...++|++||+|||++++
T Consensus 230 ~~~~~~~l~vl~~iLg~--~lre~~gl~-~~~~~~~~~~~g~~~i~~~~~~~~~~~~~i~~~l~~~~t~~el~~ak~~~~ 306 (352)
T 3cx5_B 230 NKASLAQYEVLANYLTS--ALSELSGLI-SSAKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVADLKKGKDLSPAINYTK 306 (352)
T ss_dssp CTTTHHHHHHHHHHHHS--TTSTTGGGC-SEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHHHHHHSCEECGGGHHHHH
T ss_pred CChhHHHHHHHHHHhCc--chhcccCce-EEEeecCcCcceeEEEEEEeCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 46899999999999998 222111111 111111011111122222222123333334343344699999999999999
Q ss_pred HHHHHhcccchhHHHHHHHHHHHhCCCCChHHHHHHhhccCccc
Q psy15801 82 RHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSD 125 (318)
Q Consensus 82 ~~~~~~les~~~~a~~lg~~~~~~g~~~~~~~~~~~I~~VT~ed 125 (318)
.++.+++++ .|.+..+ +|++||+++
T Consensus 307 ~~~~~~~~~--------------~~~~~~~-----~i~~vt~~~ 331 (352)
T 3cx5_B 307 LKNAVQNES--------------VSSPIEL-----NFDAVKDFK 331 (352)
T ss_dssp HHHHHHCCS--------------TTCCCCS-----CGGGCCEEC
T ss_pred HHHHhhhhc--------------cCCccce-----eeeeeeHhh
Confidence 999999997 2554444 699999654
No 36
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=94.25 E-value=0.3 Score=40.57 Aligned_cols=114 Identities=5% Similarity=-0.016 Sum_probs=63.1
Q ss_pred CCcEEEEEecCCCEEEEEEEEecCCCCCCCCCccHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEEe------cCce
Q psy15801 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATV------DREG 226 (318)
Q Consensus 153 NGlkv~~~~~~~p~v~v~l~~~~Gs~~e~~~~~Gla~ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~~------~~d~ 226 (318)
.|-+.+.++.+.+...+.+.|++.+..++ ..-...++..+|..|...+=..+|. .-|...++++ +...
T Consensus 11 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLggg~sSrL~~~lr----e~gl~y~~~~~~~~~~~~g~ 84 (197)
T 3ih6_A 11 DGERSVTLRRAGGTPLVAAMYHLPAAGSP--DFVGLDLAATILADTPSSRLYHALV----PTKLASGVFGFTMDQLDPGL 84 (197)
T ss_dssp -----------CCSCEEEEEEECCCTTST--THHHHHHHHHHHHSSTTSHHHHHHT----TTTSCSEEEEEEETTSSSCE
T ss_pred CCCEEEEEECCCCCceEEEEEecCCCCCC--cHHHHHHHHHHHcCCCCchHHHHHH----hcCceEEEEeccccccCCeE
Confidence 34445555444455566666766555443 2234456677777665443233333 2344444332 2234
Q ss_pred EEEEEEecCC-cHHHHHHHHHHhhcc---CCCCHHHHhhhhhhHHHHHhh
Q psy15801 227 IVYTIEAVRK-EIGHVHKFLASVVGK---TEFRPWEVSDLTPRLKYDRLT 272 (318)
Q Consensus 227 ~~~~~~~l~~-~l~~~l~ll~d~l~~---P~f~e~e~~~~k~~i~~ei~~ 272 (318)
+.+++.+.++ +.+.++..+.+.+.+ -.|+++||++.|..++..+..
T Consensus 85 ~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~ 134 (197)
T 3ih6_A 85 AMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQ 134 (197)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 5666666666 688888887766543 469999999999999887654
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=52.76 E-value=27 Score=21.37 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15801 55 ALQASIDVVRGAGIKDADIARGKALLK 81 (318)
Q Consensus 55 ~~~~~l~~l~~~~~t~~EL~raK~~lk 81 (318)
++...++.++..+++.+||...-..+.
T Consensus 4 alkselqalkkegfspeelaaleselq 30 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAALESELQ 30 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 466778999999999999987665543
No 38
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=44.46 E-value=20 Score=27.34 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=50.3
Q ss_pred HhCCCCCCCHHHHHHHHHHhCCeEeEEecCceEEEEEEe----cCCcHHHHHHHHHHhhccCCCCHHHHhhhhh---hHH
Q psy15801 195 AGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEA----VRKEIGHVHKFLASVVGKTEFRPWEVSDLTP---RLK 267 (318)
Q Consensus 195 l~~GT~~~s~~~i~~~l~~lG~~l~~~~~~d~~~~~~~~----l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~---~i~ 267 (318)
.+.|+-..+..++.+.++.+||.+...++....++...- ....+.+|-+ +-=|..+|+.|+.... .+.
T Consensus 17 ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~-----lgI~IvsE~~l~~~~~~~~~~~ 91 (113)
T 2cok_A 17 LTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKE-----ANIRVVSEDFLQDVSASTKSLQ 91 (113)
T ss_dssp EECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHH-----TTCCEECTHHHHHHHSCCSCHH
T ss_pred EEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHH-----CCCcEEeHHHHHHHHhhchhHH
Confidence 466887778999999999999999999988765554331 2223444433 3446777776666532 234
Q ss_pred HHHhhCCCChhh
Q psy15801 268 YDRLTRPSQGNE 279 (318)
Q Consensus 268 ~ei~~~~~~~~~ 279 (318)
.-|......+|.
T Consensus 92 ~~i~k~~i~~w~ 103 (113)
T 2cok_A 92 ELFLAHILSSWG 103 (113)
T ss_dssp HHHHHTBCSSCC
T ss_pred HHHHHhcCCCCC
Confidence 444444444443
No 39
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=41.00 E-value=62 Score=25.22 Aligned_cols=74 Identities=8% Similarity=0.026 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCeEeEEec-------------------CceEEEEEEecC-CcHHHHHHHHHHhhccCCCCHHHHhhhhhh
Q psy15801 206 GIIRHVQQAGGSLYATVD-------------------REGIVYTIEAVR-KEIGHVHKFLASVVGKTEFRPWEVSDLTPR 265 (318)
Q Consensus 206 ~i~~~l~~lG~~l~~~~~-------------------~d~~~~~~~~l~-~~l~~~l~ll~d~l~~P~f~e~e~~~~k~~ 265 (318)
.|.+..+..|+.+..... .+-..+.+++.. +.++.|++++.+++....-.++.-+.++..
T Consensus 34 tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~~~~~~p~~~d~~k~~ 113 (131)
T 1k1g_A 34 TLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKM 113 (131)
T ss_dssp HHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTTTTSCCTTSSGGGGG
T ss_pred HHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHhccCCCCccHHHHHHH
Confidence 455667778999988651 235666676653 468999999999987644344555566666
Q ss_pred HHHHHhhCCCChhh
Q psy15801 266 LKYDRLTRPSQGNE 279 (318)
Q Consensus 266 i~~ei~~~~~~~~~ 279 (318)
.+.|+..++.-+|+
T Consensus 114 Ql~eLa~~nGt~r~ 127 (131)
T 1k1g_A 114 QLRELARLNGTLRE 127 (131)
T ss_dssp GGHHHHHHHTCCC-
T ss_pred HHHHHHHHcCcCCC
Confidence 66677666554443
No 40
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=31.55 E-value=10 Score=40.58 Aligned_cols=12 Identities=8% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCC
Q psy15801 191 LRSAAGLSTEEF 202 (318)
Q Consensus 191 l~~ml~~GT~~~ 202 (318)
+++++|+|..-+
T Consensus 21 ~~~~~~~~~~p~ 32 (1108)
T 3l9o_A 21 TENLYFQGIDPF 32 (1108)
T ss_dssp ------------
T ss_pred cchhhcccCcch
Confidence 455666665444
No 41
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=30.09 E-value=90 Score=21.33 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCeEeEEecCceEEEEEEecCCcHHHHHHHHHHhhcc
Q psy15801 206 GIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGK 251 (318)
Q Consensus 206 ~i~~~l~~lG~~l~~~~~~d~~~~~~~~l~~~l~~~l~ll~d~l~~ 251 (318)
.|...+...|+.+.-..-.+.+.+.+.++.+..+.....|.++...
T Consensus 21 ~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~G 66 (76)
T 3lh2_S 21 GILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSGG 66 (76)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHHhCC
Confidence 5677889999987655556679999999999998888888887653
No 42
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=29.76 E-value=44 Score=25.18 Aligned_cols=63 Identities=8% Similarity=0.040 Sum_probs=41.7
Q ss_pred hCCCC-CCCHHHHHHHHHHhCCeEeEEecCceEEEEEEecC--CcHHHHHHHHHHhhccCCCCHHHHhhhh
Q psy15801 196 GLSTE-EFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVR--KEIGHVHKFLASVVGKTEFRPWEVSDLT 263 (318)
Q Consensus 196 ~~GT~-~~s~~~i~~~l~~lG~~l~~~~~~d~~~~~~~~l~--~~l~~~l~ll~d~l~~P~f~e~e~~~~k 263 (318)
+.|+- .++..++.+.++.+||.+..+++....++.+--.. .-+..|.++ -=|..+|++|-...
T Consensus 40 ~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~l-----gI~Ii~E~~f~~ll 105 (109)
T 2k6g_A 40 ITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL-----GTKIIDEDGLLNLI 105 (109)
T ss_dssp EESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHH-----TCEEECHHHHHHHH
T ss_pred EeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHc-----CCeEEeHHHHHHHH
Confidence 45654 46889999999999999999888765555443221 123444442 34667788776654
No 43
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=29.66 E-value=39 Score=24.63 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=44.1
Q ss_pred HhCCCCCCCHHHHHHHHHHhCCeEeEEecCceEEEEEEe-cCCcHHHHHHHHHHhhccCCCCHHHHhhhhh
Q psy15801 195 AGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEA-VRKEIGHVHKFLASVVGKTEFRPWEVSDLTP 264 (318)
Q Consensus 195 l~~GT~~~s~~~i~~~l~~lG~~l~~~~~~d~~~~~~~~-l~~~l~~~l~ll~d~l~~P~f~e~e~~~~k~ 264 (318)
.+.|+-..+..++.+.++.+||.+..+++....++-..- ...-+..|.++ -=|..++++|-....
T Consensus 14 v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~l-----gI~Ii~E~~f~~~l~ 79 (92)
T 1l7b_A 14 VITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARAL-----GVPTLTEEELYRLLE 79 (92)
T ss_dssp ECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCS-----SSCCEEHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHc-----CCcEEeHHHHHHHHH
Confidence 466776668899999999999999988887555444432 22345555543 346677777766543
No 44
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}
Probab=29.57 E-value=11 Score=37.16 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=2.8
Q ss_pred cHHHHHH
Q psy15801 186 GITHVLR 192 (318)
Q Consensus 186 Gla~ll~ 192 (318)
++-.|+.
T Consensus 428 ~~l~fl~ 434 (595)
T 3ps5_A 428 GVLSFLD 434 (595)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 45
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=27.41 E-value=5.1 Score=34.81 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=15.8
Q ss_pred EEEEEEecCCcHHHHHHHHHHhhc
Q psy15801 227 IVYTIEAVRKEIGHVHKFLASVVG 250 (318)
Q Consensus 227 ~~~~~~~l~~~l~~~l~ll~d~l~ 250 (318)
.-++-.+.+++++....-+++++.
T Consensus 84 kKiSTvV~~~dl~~F~~~Ya~VlK 107 (232)
T 1914_A 84 RKISTVVSSKEVNKFQMAYSNLLR 107 (232)
T ss_dssp CEEEEEEETTSHHHHHHHHHHHHH
T ss_pred ccEEEEECHHHHHHHHHHHHHHHH
Confidence 356666777777777666666553
No 46
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.29 E-value=57 Score=24.75 Aligned_cols=65 Identities=8% Similarity=0.027 Sum_probs=43.1
Q ss_pred HHhCCCC-CCCHHHHHHHHHHhCCeEeEEecCceEEEEEEecC--CcHHHHHHHHHHhhccCCCCHHHHhhhh
Q psy15801 194 AAGLSTE-EFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVR--KEIGHVHKFLASVVGKTEFRPWEVSDLT 263 (318)
Q Consensus 194 ml~~GT~-~~s~~~i~~~l~~lG~~l~~~~~~d~~~~~~~~l~--~~l~~~l~ll~d~l~~P~f~e~e~~~~k 263 (318)
..+.|+- .++..++.+.++.+||.+..+++....++.+--.. .-+.+|.++ -=|.++|++|-...
T Consensus 28 ~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~l-----gI~IisE~~f~~ll 95 (112)
T 2ebu_A 28 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL-----GTKIIDEDGLLNLI 95 (112)
T ss_dssp EEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHH-----TCEEEEHHHHHHHH
T ss_pred EEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHc-----CCeEEeHHHHHHHH
Confidence 3456765 46899999999999999998888765555443221 234455443 33667777776654
No 47
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=23.72 E-value=1.7e+02 Score=19.60 Aligned_cols=60 Identities=5% Similarity=-0.071 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhCCeEeEEecCceEEE-----EEEecCCcHHHHHHHHHHhhccCCCCHHHHhh
Q psy15801 202 FTHFGIIRHVQQAGGSLYATVDREGIVY-----TIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD 261 (318)
Q Consensus 202 ~s~~~i~~~l~~lG~~l~~~~~~d~~~~-----~~~~l~~~l~~~l~ll~d~l~~P~f~e~e~~~ 261 (318)
++..|+...|+..|..+.-..+.....+ .++++...-+-.-.++..++.......+||..
T Consensus 5 ~~~~elik~L~~~G~~~~r~~GSH~~~~~~~~~~~~vP~h~~ei~~g~lk~Ilkqagl~~eef~~ 69 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVERMAKGGHRLYTHPDGRIVVVPFHSGELPKGTFKRILRDAGLTEEEFHN 69 (70)
T ss_dssp CCHHHHHHHHHHTTCEEEEEETTEEEEECTTSCEEEEECSSSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEeCCCCCCceEecCCCCeeEecCCcCcCCHHHHHHHHHHcCCCHHHHhh
Confidence 5678999999999988765544333322 24455221033344567777777777777753
No 48
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=21.88 E-value=2.2e+02 Score=20.25 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCeEeEEecCc-----eEEEEEEecCCcHHHHHHHHHHhhccCC
Q psy15801 190 VLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDRE-----GIVYTIEAVRKEIGHVHKFLASVVGKTE 253 (318)
Q Consensus 190 ll~~ml~~GT~~~s~~~i~~~l~~lG~~l~~~~~~d-----~~~~~~~~l~~~l~~~l~ll~d~l~~P~ 253 (318)
....+.-+|-. .|.+.-+..|+.+...-+.. .-.+++.+.++.+..|..++.+++.++.
T Consensus 25 ~vG~IIGkgG~-----~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 25 KAGLVIGKGGE-----TIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp HHHHHSCSSSS-----HHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred hcceEECCCCH-----HHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 44555554432 46666777899988765432 3457778889999999999999998754
No 49
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=20.61 E-value=2.4e+02 Score=20.95 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q psy15801 55 ALQASIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVV 99 (318)
Q Consensus 55 ~~~~~l~~l~~~~~t~~EL~raK~~lk~~~~~~les~~~~a~~lg 99 (318)
.++.++..+.++++|.+|.++-=..|+.-.+.+++..-.+.-++.
T Consensus 42 D~E~I~~~f~~G~~t~EEa~~nl~~LK~YavSQL~~Hy~ri~~~l 86 (116)
T 1yoz_A 42 DCEEILNLYKSGKAEKEEVQRNFYLLKTYVVSQLSIHFERLKEFA 86 (116)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456668889999999999999999999999888877666555443
Done!