RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15801
(318 letters)
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16).
Length = 149
Score = 78.5 bits (194), Expect = 7e-18
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 156 KVVSV-NETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQA 214
+V S + + + + + AG+RYE DN G+ H L A T+++ + +++
Sbjct: 1 RVASEHDPPADTSAVGLWIDAGSRYEPDDNNGLAHFLEHMAFKGTKKYPSEDLEEELEKL 60
Query: 215 GGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEV 259
GGSL A RE VY +E + ++ LA F P EV
Sbjct: 61 GGSLNAYTSREHTVYYVEVLNDDLPKAVDRLADFFLNPLFSPSEV 105
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function
prediction only].
Length = 438
Score = 61.3 bits (149), Expect = 2e-10
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 1/131 (0%)
Query: 130 RSFAAQPATKALFSPDIQSGTSYNKVKVVSV-NETSPIARISVAFKAGARYETPDNLGIT 188
P +Q T N ++V++ N T+P + V KAG+R E GI
Sbjct: 1 LLGLLLQPAALPALPGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIA 60
Query: 189 HVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASV 248
H L A T + ++ GG L A + VY + + + LA +
Sbjct: 61 HFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADI 120
Query: 249 VGKTEFRPWEV 259
+ F EV
Sbjct: 121 LLNPTFDEEEV 131
Score = 31.3 bits (71), Expect = 0.72
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 68 IKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVS 127
+ ++ K LL L S ++ S + + + + G + +L +LL +EAV+ DV+
Sbjct: 352 FTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVN 411
Query: 128 --AKRSFAAQPATKALFSP 144
AK+ A + T + P
Sbjct: 412 AVAKKLLAPENLTIVVLGP 430
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 46.9 bits (112), Expect = 7e-06
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 259 VSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ +L P+ K + + ++K K +KK+K+K+K K KK+ + + I K+ +
Sbjct: 373 IDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 42.2 bits (100), Expect = 2e-04
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
PS+ K+ + K+K+K+K K KK+ + K +K
Sbjct: 391 PSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 41.9 bits (99), Expect = 3e-04
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +KK K+K+K K KK+ + K K +E
Sbjct: 399 RAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
EKK+K+ +K K KK+ + K K++K + +E
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 41.5 bits (98), Expect = 3e-04
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+KK+K K+K K KK+ + K K+++ EE
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 40.7 bits (96), Expect = 6e-04
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+ +K +K+K+K K KK+ + K + K E
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSE 433
Score = 40.7 bits (96), Expect = 7e-04
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
L + ++ EK+K+K K KK+ + K K++K +
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 41.2 bits (97), Expect = 2e-04
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++K K KKK KKKK K K KK KK + +KK+EKE
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117
Score = 37.7 bits (88), Expect = 0.003
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K KK K KKKK K K KK KK K K ++E E
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 37.7 bits (88), Expect = 0.003
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K KKK KKKK K K KK KK K E +KE ++
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Score = 37.0 bits (86), Expect = 0.005
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+K K K KK KKKK K K KK KK ++ KK E++ +
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Score = 36.6 bits (85), Expect = 0.006
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
KKKK KKK K K KK KK K +K+ K+ E+K
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 36.2 bits (84), Expect = 0.010
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
KKKK+K K KK KK K +KK +KE K E+
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 35.8 bits (83), Expect = 0.013
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
Q + KKKK+KKKK K K KK KK K ++ +K+ E +
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 35.8 bits (83), Expect = 0.014
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+KKK K KK K K KK KK K +KK+ + +++ E
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 35.1 bits (81), Expect = 0.023
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+K KKK K K KK KK K +KK ++ + K E
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 34.7 bits (80), Expect = 0.030
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+K K K KK K +KK +K+ + K E + K + +
Sbjct: 95 KDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 34.3 bits (79), Expect = 0.037
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+KKK K+K KK KK K +KK +K+ E + K
Sbjct: 92 KKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKS 128
Score = 34.3 bits (79), Expect = 0.041
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+K+K K KKKK KKKK K K KK + K E+K+
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Score = 34.3 bits (79), Expect = 0.047
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KK+ + K+K K KKKK KKKK K K + KK++K
Sbjct: 75 KKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKS 110
Score = 32.0 bits (73), Expect = 0.27
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+K KK ++K+K K KKKK KKKK K+ KK ++K+
Sbjct: 72 EKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 30.8 bits (70), Expect = 0.53
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
++ +K KK+ ++K+K K KKKK KKK+ K ++ +
Sbjct: 67 LAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 30.4 bits (69), Expect = 0.79
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKK-----KKKKKETIKKKEEKE 315
EK KK+ ++K+K K KKKK KK K KK + K EK+
Sbjct: 72 EKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Score = 30.4 bits (69), Expect = 0.89
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+K KK +KK K +KK +K+ + K + T E
Sbjct: 97 KDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLS 134
Score = 29.3 bits (66), Expect = 2.1
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
KKKKK ++ +K KK+ ++K+K K + K K++K+ +
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKD 98
Score = 28.9 bits (65), Expect = 2.2
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+KKKK+ ++ +K KK+ ++K+K K K+ KK++ +
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDK 97
Score = 27.7 bits (62), Expect = 6.8
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+KK K K +KK +K+ + K + ++ +
Sbjct: 100 DKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 41.9 bits (99), Expect = 3e-04
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
KKK+ +KK +K+KKKKK+KKK KK++ +K
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 41.5 bits (98), Expect = 4e-04
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKK 305
E+KK + +KKKKK+KKK KK+KKK +K
Sbjct: 388 EEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 40.7 bits (96), Expect = 8e-04
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
++KK K+KKKKK+KKK KK+KKK ++
Sbjct: 387 REEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 40.3 bits (95), Expect = 8e-04
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
KKK ++KK +K+KKKKK+KKK KK K ++
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 40.0 bits (94), Expect = 0.001
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
K KK +++KK +K+KKKKK+KKK K+ KK +
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 39.6 bits (93), Expect = 0.001
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K K K+++KK +K+KKKKK+KKK + KKK K
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKK 305
++++KK +K+KKKKK+KKK KK+KKK
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKG 412
Score = 38.8 bits (91), Expect = 0.003
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
EK K KKK+++KK +K+KKKKK+KK+ K+K++
Sbjct: 377 EKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKG 412
Score = 38.4 bits (90), Expect = 0.004
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E K+K K KKK+++KK +K+KKKKK K K+ K
Sbjct: 374 EIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRK 409
Score = 38.0 bits (89), Expect = 0.005
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
KY + + + +K +K+ KKKK+KKK KK+KKK +K
Sbjct: 378 KYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 37.3 bits (87), Expect = 0.008
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+K K KKK+++KK +K+KKKK+ KK ++++
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRK 409
Score = 29.9 bits (68), Expect = 1.6
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 277 GNEKKKKKNK-----KKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
G+E K++ NK K+K K KKK+++KK +K KKK +K+
Sbjct: 361 GDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKK 404
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 40.6 bits (95), Expect = 3e-04
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+G+EKK KK K + K++KKKKK+KKKKKK
Sbjct: 138 KGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167
Score = 36.7 bits (85), Expect = 0.006
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
D L + + + K ++KK KKKK + K++KKKKKE KKK+
Sbjct: 124 DPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 36.7 bits (85), Expect = 0.007
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
S+G + +KK+KKKK + K++KKKKK+KKK+ + E
Sbjct: 134 SEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
Score = 33.3 bits (76), Expect = 0.097
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
PS K + K KKKK + K++KKKKK+K+ KK+ E G
Sbjct: 131 PSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHPG 175
Score = 32.9 bits (75), Expect = 0.12
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 22/67 (32%)
Query: 270 RLTRPSQGNEKKKKKNKK----------------------KKKKKKKKKKKKKKKKKKET 307
RL +K K K+KK KK KKKK + K++KKKK+
Sbjct: 102 RLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKE 161
Query: 308 IKKKEEK 314
KKK+++
Sbjct: 162 KKKKKKR 168
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 39.3 bits (92), Expect = 4e-04
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+ K+K K+KK+KKKKKKKKKKK KK KKK
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 36.6 bits (85), Expect = 0.005
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K+ K+K K+KK+KKKKKKKKKK+T KK +K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKK 133
Score = 33.9 bits (78), Expect = 0.032
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 269 DRLTRPSQGNEKK--KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
DR+ R E+K K+ K+K K+KK+KKKKKKKKKKK + K ++K
Sbjct: 87 DRIVRAFLVEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 33.9 bits (78), Expect = 0.037
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K+ +K K+KK+KKKKKKKKKKK K++K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 33.9 bits (78), Expect = 0.038
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKK 304
++KK+K KKKKKKKKK KK KKKK
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.65
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 288 KKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K+ K+K K+KK+KKKKK+ KKK K+
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 30.0 bits (68), Expect = 0.73
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKK 300
+ Q +KKKKK KKKKK KK KKKK
Sbjct: 108 KAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 29.7 bits (67), Expect = 0.89
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKK 301
++ ++KKKK KKKKKK KK KKKK
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 39.0 bits (92), Expect = 8e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
++ K K +KK +K K K +KKK KKE K +
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 37.5 bits (88), Expect = 0.003
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+K+ K +K +KK +K K K +KKK K+ K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 35.2 bits (82), Expect = 0.016
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
KK K +K +KK +K K K +K+ KK+E K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 32.1 bits (74), Expect = 0.19
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K + K +K +KK +K K K ++ KKEE +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 31.3 bits (72), Expect = 0.29
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
KK+ K +K +KK +K K K +KK+ K++ + +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 31.0 bits (71), Expect = 0.44
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 261 DLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
DL L+ L + +K +K +K K K +KKK KK++ K
Sbjct: 53 DLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 40.3 bits (95), Expect = 9e-04
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
LT + +K KK +K +KK++++KK+KKKK K++EE+E
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 40.3 bits (95), Expect = 0.001
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
G++K KK KK +K +KK++++KK+KKK+ K+++E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEE 445
Score = 39.9 bits (94), Expect = 0.001
Identities = 16/40 (40%), Positives = 29/40 (72%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ +KK+ ++KK+KKKK KKK++++E K+K+E+E
Sbjct: 418 KAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 39.1 bits (92), Expect = 0.003
Identities = 16/40 (40%), Positives = 29/40 (72%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +K +K ++++KK+KKKK KKK++E ++KE+KE
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Score = 38.0 bits (89), Expect = 0.005
Identities = 16/38 (42%), Positives = 29/38 (76%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
EK +KK +++KK+KKKK KKK+++E +K++++E
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Score = 38.0 bits (89), Expect = 0.006
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KK + +KK++++KK+KKKK K+ +++EE++
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEK 448
Score = 37.6 bits (88), Expect = 0.007
Identities = 17/38 (44%), Positives = 30/38 (78%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E+KK+K KK KKK+++++++K+KKE K++EE+E
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 37.2 bits (87), Expect = 0.009
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+KK++ +KK+KKKK KKK+++++E +KKEE++
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 37.2 bits (87), Expect = 0.010
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ KK K +KK++++KK+KKKK + +++EE+E
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 36.8 bits (86), Expect = 0.011
Identities = 16/46 (34%), Positives = 32/46 (69%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
R + EKKKK KKK+++++++K+KK+++KE +++ E+E
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Score = 36.4 bits (85), Expect = 0.018
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+K KK++++KK+KKKK KKKE +++E+++
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKK 451
Score = 36.1 bits (84), Expect = 0.019
Identities = 12/39 (30%), Positives = 30/39 (76%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+K++++ K+KKKK KKK++++++++ K++E++E
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 35.3 bits (82), Expect = 0.041
Identities = 14/37 (37%), Positives = 30/37 (81%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+KK KKK+++++++K+KK+++K++E + +EEKE
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKE 467
Score = 33.7 bits (78), Expect = 0.10
Identities = 14/39 (35%), Positives = 29/39 (74%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+++KK KKKK KKK+++++++K++ ++KEE+E
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Score = 33.7 bits (78), Expect = 0.13
Identities = 13/39 (33%), Positives = 30/39 (76%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+KKK KKK+++++++K+KK+++K+E ++ EE++
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 29.9 bits (68), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E++ + KK KK KK +K +KK +KKE+K+
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKK 432
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 40.2 bits (94), Expect = 0.001
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
P + +K K K +K KKK K KKKK+ + K+E
Sbjct: 106 FAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKY 152
Score = 32.1 bits (73), Expect = 0.45
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KKK K KKKKK K + K K + ++
Sbjct: 125 LKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKSISIHS 164
Score = 29.8 bits (67), Expect = 1.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+K KK NK K KK K K+KKK K+ + ++ +
Sbjct: 58 KKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYD 94
Score = 28.6 bits (64), Expect = 5.5
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K D+ + + K K K K+KKK KKK + +
Sbjct: 55 KLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNN 102
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 37.2 bits (86), Expect = 0.002
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+ P + +K KKKKKK KK KK KK KK
Sbjct: 87 SHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 34.1 bits (78), Expect = 0.027
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKK 298
D P++ +KKKKK+KK KK KK KK
Sbjct: 91 DHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.7 bits (77), Expect = 0.031
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 287 KKKKKKKKKKKKKKKKKKKE 306
KKKKKK KK KK KK KK+
Sbjct: 101 KKKKKKSKKTKKPKKSSKKD 120
Score = 33.7 bits (77), Expect = 0.039
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
PS ++ + +K KKKKKK KK KK KK +
Sbjct: 84 GEPSHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSK 118
Score = 33.3 bits (76), Expect = 0.042
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 285 NKKKKKKKKKKKKKKKKKKKKE 306
K KKKKKK KK KK KK K+
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKK 119
Score = 31.4 bits (71), Expect = 0.21
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 289 KKKKKKKKKKKKKKKKKETIKK 310
K KKKKKK KK KK KK + K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.6 bits (69), Expect = 0.38
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 291 KKKKKKKKKKKKKKKETIKKKE 312
K KKKKKK KK KK + KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.1 bits (65), Expect = 1.4
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 292 KKKKKKKKKKKKKKETIKKKEEKE 315
K KKKKKK KK KK KK +K+
Sbjct: 99 KPKKKKKKSKKTKKP--KKSSKKD 120
Score = 29.1 bits (65), Expect = 1.5
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 290 KKKKKKKKKKKKKKKKETIKKK 311
K KKKKKK KK KK K++ KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 37.3 bits (87), Expect = 0.002
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
EKK+K +K KK+ K++KKK+KKKKK+ KK +KE
Sbjct: 73 EEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEE 111
Score = 37.3 bits (87), Expect = 0.002
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E+K K + K++KKK+KKKKKKK KK ++KE +
Sbjct: 80 EEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116
Score = 36.9 bits (86), Expect = 0.003
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
EK KK K++KKK+KKKKKKK KK + +K+ K
Sbjct: 80 EEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEE 120
Score = 33.5 bits (77), Expect = 0.046
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K+ K+ KKK+KKKKKKK KK KK+++ K E+ +
Sbjct: 86 KRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDE 124
Score = 31.6 bits (72), Expect = 0.23
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K++K K+KKKKKKK KK KK++K+ + +E +
Sbjct: 86 KRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSD 123
Score = 30.4 bits (69), Expect = 0.54
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+++KKK KKKKKKK KK KK++K+ ++ ++ ++E
Sbjct: 88 AKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEE 125
Score = 30.0 bits (68), Expect = 0.91
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+KKK+K KKKKK KK KK++K+ K EE+E
Sbjct: 91 QKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEE 127
Score = 29.2 bits (66), Expect = 1.4
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Query: 279 EKKKKKNKKK--KKKKKKKKK--KKKKKKKKETIKKKEEKE 315
++K+++ K+K +K KK+ K KKK+KKKK+ KK K+
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKK 109
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 37.8 bits (88), Expect = 0.003
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
EKK+KK KK+ KK+KK+KK KK+K + KK++K+
Sbjct: 153 EKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Score = 37.8 bits (88), Expect = 0.003
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E+++KK KKKKK+ KK+KK+KK KK+K K +K
Sbjct: 149 VEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Score = 36.2 bits (84), Expect = 0.010
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
EKKKKK KK+KK+KK KK+K + K KKK++K+
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 36.2 bits (84), Expect = 0.011
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+KKK+ K+KK+KK KK+K + K K+ KKK++K
Sbjct: 157 KKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 35.8 bits (83), Expect = 0.012
Identities = 17/39 (43%), Positives = 29/39 (74%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K +K+ + ++++KK+KKKKK+ KK+K+ K K+EK V
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVE 179
Score = 35.8 bits (83), Expect = 0.014
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E ++++ K+KKKKK+ KK+KK+KK KKE + + +
Sbjct: 146 EAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 35.5 bits (82), Expect = 0.017
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ +KKKK+ KK+KK+KK KK+K + K + KKK++K
Sbjct: 151 EEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 34.7 bits (80), Expect = 0.034
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
S+ K + + + ++++KK+KKKKK+ KKE +KK++KE
Sbjct: 135 SEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 33.5 bits (77), Expect = 0.088
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
L S+ +EK+ +K+ + ++++KK+KKKKK+ +KKE+K+
Sbjct: 127 ELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKD 172
Score = 33.2 bits (76), Expect = 0.11
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E + ++ +KK+KKKKK+ KK+KK+KK + K E K
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 31.2 bits (71), Expect = 0.47
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
+ + ++KK+K KK+K + K KKKKKKKK+
Sbjct: 159 KKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 38.5 bits (90), Expect = 0.003
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
N + KKK++KKKKKKK+KK+ K + + K K ++
Sbjct: 62 KNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
Score = 38.2 bits (89), Expect = 0.005
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ + + NE KKK KKKKKKK+KK+ K + + K K+ K
Sbjct: 53 STKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100
Score = 36.2 bits (84), Expect = 0.016
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+K KK++K + KKK +KKKKKKK+KKE + E K
Sbjct: 54 TKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKL 91
Score = 35.5 bits (82), Expect = 0.027
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E K KK KK+ K + KKK +K+ KKKE+KE
Sbjct: 45 EENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKE 82
Score = 34.7 bits (80), Expect = 0.059
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 261 DLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
D K + + EKK+ K++ + K K KK KK KKK K E
Sbjct: 61 DKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNED 114
Score = 33.9 bits (78), Expect = 0.088
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKK---KKKETIKKKEEKEV 316
S+ + + K KK KK+ K KK++ KKK++K+
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKE 79
Score = 33.2 bits (76), Expect = 0.19
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KK K + K + KKK +KKKKKKK++ K E + G
Sbjct: 49 VATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLG 92
Score = 32.8 bits (75), Expect = 0.22
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E K ++KKK +KKKKKKK+KK+ K + K +
Sbjct: 59 KEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPK 97
Score = 31.6 bits (72), Expect = 0.49
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K D+ + ++KK +K KKKKK+KK+ K + + K +T KK ++ +
Sbjct: 55 KKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKP 106
Score = 31.6 bits (72), Expect = 0.54
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+K+KK+ K + + K K KK KK K+ K + E
Sbjct: 77 KKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNE 113
Score = 31.2 bits (71), Expect = 0.68
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
S+ +KKKK+ K+ K + + K K KK K+T KK + + N
Sbjct: 69 KSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPN 112
Score = 30.8 bits (70), Expect = 0.83
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK----------ETIKKKEEKE 315
+ K + + K K KK KK KKK K I + EK
Sbjct: 79 EKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKS 129
Score = 30.5 bits (69), Expect = 1.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+KKK+K + K + + K K KK KK K + K
Sbjct: 75 KKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNE 113
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 35.9 bits (83), Expect = 0.003
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K KK KKKKKKKKKK K K+E + +KEE+E
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEE 44
Score = 34.7 bits (80), Expect = 0.009
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K K KKKKKKKKKK K K++ T K++EEK
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKS 46
Score = 33.2 bits (76), Expect = 0.034
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K K KK KKKKKKKKKK K + E++E
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEE 42
Score = 32.0 bits (73), Expect = 0.071
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KK KKKKKKKKKK K K++ ++ ++K E
Sbjct: 14 GKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 31.2 bits (71), Expect = 0.16
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KK KKKKKKK K K++ +K++E E G
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEG 55
Score = 30.5 bits (69), Expect = 0.25
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KK KKKKKKKKK K K++ +KE +K +
Sbjct: 15 KKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLK 53
Score = 30.5 bits (69), Expect = 0.28
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K K KK KKKKKKKKKK K++ E
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKE 41
Score = 29.7 bits (67), Expect = 0.46
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+K K KKKKKKKK K K++ +K+E K E
Sbjct: 14 GKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 28.2 bits (63), Expect = 1.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+KKKKK KKK K K++ +K++++K
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSS 47
Score = 27.4 bits (61), Expect = 3.0
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KKKKK KKKK K K++ +K++++K + + ++
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEG 55
Score = 27.0 bits (60), Expect = 4.3
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ KKKK KKKKK K K++ +K++++++ + + KE
Sbjct: 17 IDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKE 54
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 37.2 bits (87), Expect = 0.005
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
R Q +K++ +K+K ++++K K K +KK + ++ +
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 31.8 bits (73), Expect = 0.31
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+K+K ++++K K K +KK+K + + + + +
Sbjct: 125 AGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Score = 31.4 bits (72), Expect = 0.47
Identities = 5/37 (13%), Positives = 23/37 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ ++ KK++ +K+K ++++K + +++++
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRK 148
Score = 30.3 bits (69), Expect = 1.1
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+K+ ++++K K K +KK+K + + + V
Sbjct: 124 AAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 28.7 bits (65), Expect = 3.3
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K + + +++ KK++ +K+K ++E K +
Sbjct: 108 AKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAP 143
Score = 28.0 bits (63), Expect = 4.9
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++++K K K +KK+K + +K + + + E V
Sbjct: 132 PRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVG 170
Score = 28.0 bits (63), Expect = 5.2
Identities = 6/36 (16%), Positives = 21/36 (58%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ ++ ++ KK++ +K+K +++++ K K+
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKK 146
Score = 28.0 bits (63), Expect = 5.5
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K K + ++ +++ KK++ +K+K +K + K
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAP 143
Score = 28.0 bits (63), Expect = 5.6
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ + +++ K K K +KK+K + +K + + + E+
Sbjct: 127 EKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELT 168
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 37.7 bits (88), Expect = 0.005
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
EKK+K ++ KKKK K+ K K KK K
Sbjct: 249 EKKRKSKEEIKKKKPKESKGVKALKKVVAKGMK 281
Score = 36.5 bits (85), Expect = 0.013
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
S+ +K+K K + KKKK K+ K K KK KK
Sbjct: 246 SRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 36.2 bits (84), Expect = 0.017
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 240 HVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNK-------KKKKKK 292
+ L S + ++ S L P ++ L + + ++KKK++ + + +KK
Sbjct: 194 YACDLLCSYLPPDLYKELLKSLLIP--EFKPLDKYLKESKKKKRETEEDVEAAESRAEKK 251
Query: 293 KKKKKKKKKKKKKETIKKKEEKEVN 317
+K K++ KKKK KE+ K K+V
Sbjct: 252 RKSKEEIKKKKPKESKGVKALKKVV 276
Score = 35.8 bits (83), Expect = 0.019
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 266 LKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
R S+ KKKK + K K KK K KK
Sbjct: 245 ESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 35.0 bits (81), Expect = 0.039
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+ + +KK+ K++ KKKK K+ K K K+ + K
Sbjct: 243 AAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAK 278
Score = 33.8 bits (78), Expect = 0.084
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ + KK+K K++ KKKK K+ K + +KK K
Sbjct: 243 AAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAK 278
Score = 31.5 bits (72), Expect = 0.53
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETI 308
K++ K KK K+ K K KK K + I
Sbjct: 253 KSKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+ ++++ KK K K+ K K KK K K
Sbjct: 248 AEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMK 281
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 38.2 bits (88), Expect = 0.005
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ E KK K + + + + ++K E +KK+E+
Sbjct: 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
Score = 36.7 bits (84), Expect = 0.020
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K D + ++ +K + K + + + + ++K + KK+E K+
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 35.1 bits (80), Expect = 0.050
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 232 EAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKK----KKKNKK 287
E +K++ + K A K E + ++ ++K + ++ ++KK KK +
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAE--ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686
Query: 288 KKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+KK + KK+ ++ KK E +KKKE +E
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
Score = 35.1 bits (80), Expect = 0.054
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
K + + + ++K + +KKKE KKK +
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
Score = 35.1 bits (80), Expect = 0.055
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ +E KKK + KKK KKK ++ KK E K + E
Sbjct: 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
Score = 34.0 bits (77), Expect = 0.11
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ ++K + +KKK++ KKK + KKK E+
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
Score = 34.0 bits (77), Expect = 0.13
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K + + + ++K + +KKK++ KKK KK EEK+
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Score = 33.6 bits (76), Expect = 0.15
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E + D + E +KK ++ KKK KKK ++KKK + KKK E++
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
Score = 33.2 bits (75), Expect = 0.19
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKK---KKKKKKKKKKETIKKKEEKE 315
K D + ++ +KK KKK ++ KK K + + E +E+ E
Sbjct: 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Score = 33.2 bits (75), Expect = 0.21
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +E KKK + KKK + KK KKK E KK EEK+
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Score = 33.2 bits (75), Expect = 0.23
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +E KKK + KK + KKK ++ KKK E K E K+
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
Score = 32.8 bits (74), Expect = 0.27
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ KKK ++ KKK + KK + KKK + KK EE +
Sbjct: 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
Score = 32.8 bits (74), Expect = 0.29
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ KKK ++KKK + KKK ++ KKK + +KK +
Sbjct: 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
Score = 32.4 bits (73), Expect = 0.34
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+E KKK + KK + KKK ++ KKK KK EE +
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
Score = 32.4 bits (73), Expect = 0.35
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 267 KYDRLTRPSQGNEKK----KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K D + ++ ++KK KK KKK + KKK ++KKK E KK EE +
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Score = 32.0 bits (72), Expect = 0.50
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ KKK ++ KK + KKK ++ KK +E KK EE +
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
Score = 32.0 bits (72), Expect = 0.53
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + KKK +KKK + KKK ++ KKK E K K+
Sbjct: 1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Score = 32.0 bits (72), Expect = 0.54
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
E+ KK ++ KKK ++ KKK KKK E KK E
Sbjct: 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
Score = 31.6 bits (71), Expect = 0.60
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ KKK ++KKK + KKK ++ KK E KK EE +
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
Score = 31.6 bits (71), Expect = 0.66
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
E KKK + KKK ++KKK + KKK +E KK +E
Sbjct: 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
Score = 31.3 bits (70), Expect = 0.78
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 276 QGNEKKKKKNKKKKKKKKKK-----KKKKKKKKKKETIKKKEEK 314
+ E KK KKK ++ KK KKK ++ KK K E +
Sbjct: 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
Score = 31.3 bits (70), Expect = 0.81
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ KKK ++ KK ++ KKK ++ KK E KK EE +
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
Score = 31.3 bits (70), Expect = 0.85
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
E+ KK ++ KKK ++ KK + KKK +E KK +E
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
Score = 30.9 bits (69), Expect = 1.0
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
E+ KK ++ KKK ++ KKK + KK E KK +E
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
Score = 30.9 bits (69), Expect = 1.1
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E+ KKK KKK ++KKK + KKK E KKK ++
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
Score = 30.9 bits (69), Expect = 1.2
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+KKK + KKK KKK ++KKK E KK EE +
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Score = 30.9 bits (69), Expect = 1.3
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 276 QGNEKKKKKNKKKKKKKKKK----KKKKKKKKKKETIKKKEEK 314
+ EKKK KKK ++ KK KKK ++ KK E KKK E+
Sbjct: 1426 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Score = 30.5 bits (68), Expect = 1.3
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
E KK+ ++ KK ++ KKK+ ++KKK E +KK EE
Sbjct: 1692 EALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
Score = 30.5 bits (68), Expect = 1.5
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
E+KKK ++ KKK ++ KKK + KK KK +E
Sbjct: 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE 1422
Score = 30.5 bits (68), Expect = 1.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
++KK KK+ ++ KK ++ KKK+ E KK EE
Sbjct: 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
Score = 30.5 bits (68), Expect = 1.6
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
E+KKK ++ KKK ++ KK + KKK +E KK +
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
Score = 30.5 bits (68), Expect = 1.6
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E+ KKK ++ KK + KKK ++ KK E KK EE +
Sbjct: 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
Score = 30.1 bits (67), Expect = 1.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKK--KKKKKKKKKETIKKKEEKE 315
K D + ++ +KK + KK + KKK KK ++ KK + KK EE +
Sbjct: 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
Score = 30.1 bits (67), Expect = 1.8
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
KKK + KKK ++KKK + KKK E KK +E
Sbjct: 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
Score = 30.1 bits (67), Expect = 2.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 276 QGNEKKKKKNKKKKKKKKK-----KKKKKKKKKKKETIKKKEEKE 315
+ E KK KKK ++ K KKK ++ KKK + KK E +
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
Score = 29.7 bits (66), Expect = 2.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K D + ++ +K + K ++ KK + KK ++ KK + KK EEK+
Sbjct: 1498 KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
Score = 29.7 bits (66), Expect = 2.7
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKK----KKKKETIKKKEEK 314
KKK + KK + KKK ++ KK KKK E KKK ++
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
Score = 29.7 bits (66), Expect = 2.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 276 QGNEKKKKKNKKKKKKKKKK-----KKKKKKKKKKETIKKKEEK 314
+ EKKK KKK ++ KK KK KKK + KKK E+
Sbjct: 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
Score = 29.3 bits (65), Expect = 3.0
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E+ KK ++KKK ++ KKK+ ++KKK E +KK EE+
Sbjct: 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
Score = 29.3 bits (65), Expect = 3.1
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 253 EFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
E R EV L K + + E K K + KK +++KKK ++ KKK+ E KK E
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
Query: 313 E 313
E
Sbjct: 1651 E 1651
Score = 29.3 bits (65), Expect = 3.7
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KKK ++ KKK ++KKK + KKK +E K E K+
Sbjct: 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
Score = 29.3 bits (65), Expect = 3.8
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 276 QGNEKKKKKNKKKKKKKKK-----KKKKKKKKKKKETIKKKEEK 314
+ EKKK KKK ++ K KKK ++ KKK + KKK E+
Sbjct: 1297 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340
Score = 29.0 bits (64), Expect = 4.1
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 279 EKKKKKNKKKKKKKKKKK-----KKKKKKKKKETIKKKEEK 314
E+ KK ++ KKK ++ KK KK ++ KK + KKK E+
Sbjct: 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
Score = 29.0 bits (64), Expect = 4.1
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 279 EKKKKKNKKKKKKKKKK----KKKKKKKKKKETIKKKEEK 314
E+KKK ++ KK ++KKK KKK ++ KK + KKK E+
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
Score = 29.0 bits (64), Expect = 4.4
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E KKK+ ++KKK ++ KK +++ K K E KK+ E++
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Score = 29.0 bits (64), Expect = 4.5
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKK----KKKETIKKKEEK 314
KKK + KKK + KKK ++ KKK KK KKK ++
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE 1422
Score = 29.0 bits (64), Expect = 4.7
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E +KK + KK+ ++ KK ++ KKK+ KKK E+
Sbjct: 1685 EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
Score = 28.6 bits (63), Expect = 6.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++ KK + KKK ++ KKK + KK KKK ++
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
Score = 28.2 bits (62), Expect = 8.1
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 276 QGNEKKK----KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ EKKK KK ++KKK + KKK ++ KK E KK EE +
Sbjct: 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
Score = 28.2 bits (62), Expect = 8.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E+ KK + KKK ++ KK + KKK +E K E K+
Sbjct: 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
Score = 28.2 bits (62), Expect = 8.3
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKK--KKKKKKKKKKETIKKKEEK 314
K D + ++ +K ++ KK ++ KK KKK ++ KK + KKK E+
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 37.9 bits (89), Expect = 0.007
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
L ++ + + K KK K +K K++ E K
Sbjct: 812 ELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 36.3 bits (85), Expect = 0.021
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K KK K +K K++ +K+ K
Sbjct: 823 YLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 35.2 bits (82), Expect = 0.050
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
EK + K KK K +K + EK+
Sbjct: 819 EKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKD 855
Score = 34.0 bits (79), Expect = 0.12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKET 307
KK K +K K++ +K K T
Sbjct: 832 PAGKKAAVKFSRKTKQQYVASEKDGKAT 859
Score = 34.0 bits (79), Expect = 0.12
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ K KK K +K K++ + +++
Sbjct: 822 RYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDG 856
Score = 33.6 bits (78), Expect = 0.13
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+K + K KK K ++T ++ E +G
Sbjct: 818 PEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDG 856
Score = 30.9 bits (71), Expect = 1.0
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K K + K KK + +K +++ V
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYV 850
Score = 30.1 bits (69), Expect = 1.6
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+K +K + K K+ K K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRK 844
Score = 30.1 bits (69), Expect = 1.7
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K + + K KK K + K K++
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQY 849
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 36.9 bits (86), Expect = 0.007
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
EK+++K K K K KK K K ++K++ ++KEEK +
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 36.2 bits (84), Expect = 0.014
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+++K++ K K K K KK K K +++ K+E++E
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEE 78
Score = 35.8 bits (83), Expect = 0.021
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E++K K K K KK K K ++K+K + K+++
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR 82
Score = 34.6 bits (80), Expect = 0.038
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E+K+++ K K K KK K K ++KE K+++E++
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEK 79
Score = 34.6 bits (80), Expect = 0.041
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E ++K+ +K K K K KK K K +E K K EKE
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKE 77
Score = 33.5 bits (77), Expect = 0.10
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E+K K K K KK K K ++K+K K ++K +E
Sbjct: 47 EEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRE 83
Score = 33.1 bits (76), Expect = 0.15
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K K K K ++K+K K++K++K + +E+
Sbjct: 47 EEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTP 89
Score = 31.9 bits (73), Expect = 0.37
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E++ ++ +++K K K K KK K K K+K ++E
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKRE 75
Score = 30.8 bits (70), Expect = 0.75
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++ KK K K ++K+K K++K++K ++ E ++E
Sbjct: 51 KVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDEL 93
Score = 30.0 bits (68), Expect = 1.3
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K K +K K KKKK K K + + +
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDD 226
Score = 30.0 bits (68), Expect = 1.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K K K K ++K+K K++K++K +++ E
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPE 90
Score = 29.6 bits (67), Expect = 1.7
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
NEK K + K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGA 220
Score = 29.6 bits (67), Expect = 1.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K KK K K ++K+K K++K++K +E + E E
Sbjct: 57 KAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDE 92
Score = 29.6 bits (67), Expect = 1.9
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
EK K KKKK K K K +
Sbjct: 198 EKAAKGGKKKKGKAKAKLNVGGANDDDDDYDGY 230
Score = 29.2 bits (66), Expect = 2.5
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDD 223
Score = 28.9 bits (65), Expect = 2.8
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KK K ++K+K K++K++K ++ E++
Sbjct: 58 AKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDEL 93
Score = 28.9 bits (65), Expect = 3.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++++ + K+++K K K K KK K + +K++ K
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREK 76
Score = 28.1 bits (63), Expect = 6.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K +K+K K++K++K ++ ++ + EK
Sbjct: 61 ALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 35.7 bits (83), Expect = 0.007
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 256 PWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
PW V DL ++ + ++KKKK K+ KK++ + ++++ K+ K+K +
Sbjct: 58 PWRVIDLKK--HNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTR 114
Score = 31.1 bits (71), Expect = 0.26
Identities = 10/21 (47%), Positives = 19/21 (90%)
Query: 279 EKKKKKNKKKKKKKKKKKKKK 299
EK+ +KN++KK K+++K+K+K
Sbjct: 110 EKRTRKNREKKFKRRQKEKEK 130
Score = 31.1 bits (71), Expect = 0.29
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
E+ K++ +K+K+ +K ++KK K+++K+
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKRRQKE 127
Score = 29.9 bits (68), Expect = 0.72
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKK 302
+K+K+ +K ++KK K+++K+K+K
Sbjct: 107 AEKEKRTRKNREKKFKRRQKEKEK 130
Score = 29.5 bits (67), Expect = 1.1
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+++ +K K+ +K ++KK K+++K+K+K
Sbjct: 104 KERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 28.8 bits (65), Expect = 1.6
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKK 303
+K+K +K ++KK K+++K+K+K
Sbjct: 105 ERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 28.4 bits (64), Expect = 2.5
Identities = 8/33 (24%), Positives = 24/33 (72%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
++++ ++ +K+K+ +K ++KK K+++ K+K
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 28.0 bits (63), Expect = 3.6
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 280 KKKKKNKKKKKKKKKKKKKKK---KKKKKETIKKKEEKE 315
+K+ +K+KKKK+K+ KK+ + ++E K++ EKE
Sbjct: 72 EKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKE 110
Score = 27.2 bits (61), Expect = 5.4
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKK 301
R R + EK+K+ K ++KK K+++K+K+K
Sbjct: 99 RRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 34.2 bits (79), Expect = 0.010
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ + K + ++ ++KKKKKKK KKK KE I +K+E+
Sbjct: 24 DEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQ 63
Score = 30.0 bits (68), Expect = 0.32
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
++ + KKKKKKK KKK K+ +KKE ++++
Sbjct: 34 RISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRR 67
Score = 30.0 bits (68), Expect = 0.32
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKK---KKKKKKKKKKKKET 307
E + ++ ++ R SQ N +KKKK KK KKK K +KK++ +++ KE
Sbjct: 19 EGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEV 71
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 37.1 bits (86), Expect = 0.011
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
EKK K KK K K K KKK K ++ K +++
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAG 785
Score = 33.6 bits (77), Expect = 0.15
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+KK KKK K K K KKK + KK K+ G
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAG 785
Score = 30.2 bits (68), Expect = 1.8
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
G K + K K KKK K K K K+ K K +K
Sbjct: 741 GTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKK 778
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 36.8 bits (85), Expect = 0.012
Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
T+P++ + + K ++K+K++ K++KKKKK+K KE K ++ KE
Sbjct: 91 KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKE 135
Score = 33.3 bits (76), Expect = 0.14
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ G E++K+K + K++KKKKK+K K++ K ++ ++ +EK
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 33.3 bits (76), Expect = 0.17
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ + K+ +K+K++ K++KKKKK+K K+E +K ++E
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 32.9 bits (75), Expect = 0.20
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ K+ KN+ K+++K+K++ K++KKKK+ K+E K+
Sbjct: 87 GPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKD 130
Score = 32.2 bits (73), Expect = 0.43
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ E+ K++ KKKK+K K++ K +K K++ + + +EKE
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKE 147
Score = 31.4 bits (71), Expect = 0.73
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
R +G K K K+ K + K+++K+K++ ++K++K+
Sbjct: 79 RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKE 122
Score = 31.0 bits (70), Expect = 0.88
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
EK++ K +KKKKK+K K++ K +K K+E +K+ KE
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEK 146
Score = 30.6 bits (69), Expect = 1.1
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +++KKK K+K K++ K +K K++ K+K K+KE+++
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 30.2 bits (68), Expect = 1.4
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+P + + +K K + K+K+ K+K+K+K+KK +E ++EEK+
Sbjct: 123 KPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Score = 30.2 bits (68), Expect = 1.5
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ ++ + K K K + K+++K+K++ K++K+ K+K ++E
Sbjct: 79 RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Score = 30.2 bits (68), Expect = 1.5
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
P K++ K K+ K+K+K+K+KK ++ + +KK E+
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV 169
Score = 29.9 bits (67), Expect = 2.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
E+ + K++ KK KKK KKK+ ++E ++ + V G
Sbjct: 167 ERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKG 206
Score = 29.9 bits (67), Expect = 2.1
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
Q E+KKKK +K K++ K +K K++ K+K+ +K++EKE
Sbjct: 112 QVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKE 151
Score = 29.9 bits (67), Expect = 2.3
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
E K +K K++ K+K+ K+K+K+K+KK + E+E
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Score = 29.5 bits (66), Expect = 2.7
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+KKK+K K++ K +K K++ K+K+ KE K+KE+K
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 29.1 bits (65), Expect = 3.2
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ K++K KKK+K K++ K +K K++ KE KE+++
Sbjct: 112 QVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 29.1 bits (65), Expect = 3.5
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
EK K++ K +K K++ K+K+ K+K+KE KK EE
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156
Score = 28.3 bits (63), Expect = 6.2
Identities = 11/47 (23%), Positives = 29/47 (61%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
DR + ++ K+ +K+K+KK ++ + ++++KK+E ++ K +
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPK 176
Score = 27.5 bits (61), Expect = 9.7
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++K K+ K +K K++ K+K+ K+K++ +KK E+ +
Sbjct: 121 KEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 36.8 bits (86), Expect = 0.014
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E+KK + K++K +KK +K++ +K K+ + +K
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKK 445
Score = 35.7 bits (83), Expect = 0.029
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 285 NKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ ++KK +KK++K +KK +KE +K K+
Sbjct: 407 SPAERKKLRKKQRKAEKKAEKEEAEKAAAKK 437
Score = 34.9 bits (81), Expect = 0.056
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+K++K KK +K++ +K KKK + K + E
Sbjct: 416 KKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 34.5 bits (80), Expect = 0.070
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
++KK +KK++K +KK +K+E K +K+
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAKKKA 439
Score = 34.5 bits (80), Expect = 0.073
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+KK++ +KK +K++ +K KKK + KK + +
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGET 453
Score = 33.8 bits (78), Expect = 0.10
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
N +KK +KK++K +KK +K++ E K++ E
Sbjct: 403 NGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAA 442
Score = 33.8 bits (78), Expect = 0.13
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++KK KK++K +KK +K++ +K + + K
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
Score = 33.8 bits (78), Expect = 0.13
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 264 PRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
P L GN ++ K +KK++K +KK +K++ +K KKK E
Sbjct: 391 PLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 33.4 bits (77), Expect = 0.18
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+K +K+ +K KKK + KK K + KK + + G
Sbjct: 423 KKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPLG 462
Score = 32.6 bits (75), Expect = 0.30
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
++K +KK++K +KK +K++ +K KK E
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Score = 29.9 bits (68), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K +KK +K++ +K KKK + KK E K+V+
Sbjct: 420 KAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVD 457
Score = 28.4 bits (64), Expect = 5.7
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++G E++ + ++KK +KK++K +KK +KEE E
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKA---EKEEAE 431
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 36.3 bits (85), Expect = 0.016
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 258 EVSDLTPRLK--YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
EV++L + K + L ++ K +K +KKK+K++ K K K K
Sbjct: 41 EVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKP 90
Score = 35.2 bits (82), Expect = 0.034
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
KK K K +KKK+K++ K K K +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 33.7 bits (78), Expect = 0.10
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETI 308
+K+ K K +KKK+K++ K K K K +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92
Score = 31.7 bits (73), Expect = 0.47
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
KK+ K K +KKK+K++ K K + K
Sbjct: 63 KKELKAWHKAQKKKEKQEAKA--AKAKSK 89
Score = 31.7 bits (73), Expect = 0.48
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
KK+ K K +KKK+K++ + K K + +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92
Score = 29.0 bits (66), Expect = 3.5
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 261 DLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKK 301
++ LK L + K +K K+K++ K K K K +
Sbjct: 51 EMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 36.2 bits (84), Expect = 0.018
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ S K K K ++ +K + K+KKK+KKKE KKK+ + +
Sbjct: 297 KKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLE 349
Score = 31.6 bits (72), Expect = 0.47
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ ++ + K+K K K ++ +K + K+KKKE KKKEEK+
Sbjct: 293 LKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKE--KKKEEKK 341
Score = 31.2 bits (71), Expect = 0.81
Identities = 18/36 (50%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKK-KKKKETIKKKE 312
NEK + K+KKK+KKK++KKKK+ ++ +E I+K E
Sbjct: 321 NEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLE 356
Score = 28.1 bits (63), Expect = 6.9
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
EK K + K+ KK + K +K K E++
Sbjct: 283 QEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERD 320
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 35.7 bits (83), Expect = 0.021
Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKK---ETIKKKEEKE 315
+++++ + ++KK++KKK++++ K K E +K EEKE
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKE 315
Score = 31.8 bits (73), Expect = 0.43
Identities = 12/39 (30%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 279 EKKKKKNKKKKKKKKKKKKK---KKKKKKKETIKKKEEK 314
E ++KK +KKK++++ K K ++++K +E +KK+ +
Sbjct: 283 EAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
Score = 30.7 bits (70), Expect = 1.1
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK------KKETIKKKEEKEVNG 318
D+L E +K +K ++++++K K ++++ KKE KK+E +
Sbjct: 245 VDKLANLKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLA 301
Score = 28.4 bits (64), Expect = 5.1
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Query: 279 EKKKKKNKKKKKK------KKKKKKKKKKKKKK 305
EKKK++ + K K +K ++K++KK+ +K
Sbjct: 290 EKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 35.8 bits (83), Expect = 0.026
Identities = 12/39 (30%), Positives = 28/39 (71%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++++ ++ K++K+ K++K+ +K KK++E KK+ EK
Sbjct: 547 LDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 35.4 bits (82), Expect = 0.042
Identities = 13/38 (34%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E +++K +K+ K++K+ +K KK+++K KKKE ++
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEK---KKKELEK 585
Score = 33.1 bits (76), Expect = 0.22
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K++ ++K++K+ K++K+ +K KK+ KKK+E E
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELE 584
Score = 32.3 bits (74), Expect = 0.34
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+K+ K++K+ +K KK+++KKKK+ E ++K
Sbjct: 559 EKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 31.5 bits (72), Expect = 0.54
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
K++K +K KK+++KKKK+ +K +K I E
Sbjct: 562 ALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAE 595
Score = 31.5 bits (72), Expect = 0.71
Identities = 11/34 (32%), Positives = 26/34 (76%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K +K++ +++K++K+ K++K+ +KK+EEK+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKK 579
Score = 30.8 bits (70), Expect = 1.0
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
++ K+ K+ +K KK+++KKKK+ +K E K
Sbjct: 560 KEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 30.8 bits (70), Expect = 1.2
Identities = 9/34 (26%), Positives = 26/34 (76%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K+ +++K++K+ K++K+ +K + ++K++KE+
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKEL 583
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ +K K +++KKKK+ +K +K K E K++E+K
Sbjct: 565 EQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDK 603
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 35.5 bits (82), Expect = 0.028
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ ++L K K + KK++ + ++KKK+KK K + +
Sbjct: 349 RIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 33.1 bits (76), Expect = 0.16
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
R + ++ + K K ++ KK++ + ++KKK++ K + N
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 35.0 bits (81), Expect = 0.030
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E K + ++++ KKKKKKKKKK KK T E
Sbjct: 170 ELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVS 207
Score = 31.9 bits (73), Expect = 0.38
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E+++ K KKKKKKKK KK + T+ E+
Sbjct: 177 EEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTEL 214
Score = 31.5 bits (72), Expect = 0.39
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
P++ + K ++++ KKKKKKKKKK KK E V
Sbjct: 164 PTEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATV 206
Score = 30.8 bits (70), Expect = 0.89
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
E++ KK KKKKKKK KK + + +G
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSG 217
Score = 29.6 bits (67), Expect = 1.8
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K + T S + + + KK KKK+ E+ EV
Sbjct: 193 KKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDNEKSEV 242
Score = 29.6 bits (67), Expect = 1.9
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E+ KKK KKKKKK KK + + E
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELS 215
Score = 27.3 bits (61), Expect = 9.1
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KKKK KKKKK KK + + E G
Sbjct: 182 KKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAG 219
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 35.2 bits (81), Expect = 0.030
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
E K+ K KK + K K K KK KK+ ++ G
Sbjct: 142 PEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPG 182
Score = 33.7 bits (77), Expect = 0.097
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
P KK KK + K K K KK KKK K
Sbjct: 141 PPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMP 181
Score = 32.2 bits (73), Expect = 0.32
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ K+ KK KK + K K K KK KKK ++ + K
Sbjct: 137 ISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVK 179
Score = 28.7 bits (64), Expect = 3.9
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
+ + + K K KK KKK + K I
Sbjct: 147 VKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGID 184
Score = 28.7 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
P + K+ KK KK + K K K KK + + V
Sbjct: 136 PISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVK 179
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 35.5 bits (82), Expect = 0.033
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
L N++ + K KKKKKKKKKKKKK + + +
Sbjct: 38 AFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWS 86
Score = 33.1 bits (76), Expect = 0.17
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKK-----KKKETIKKKEEKEVNG 318
S+ E + K+N KKKKKKKKKKKKK + +
Sbjct: 45 SENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDN 93
Score = 32.0 bits (73), Expect = 0.43
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 276 QGNEKKKKKNKKK--------------KKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+G +KK KK+KK ++ + K+ KKKKKKK+ KKK E
Sbjct: 20 KGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYD 76
Score = 30.8 bits (70), Expect = 1.1
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ K++K+ K+K KKK KK KK + + E
Sbjct: 6 GENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQE 49
Score = 30.5 bits (69), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
N + + K +K++ K+K KKK KK KK
Sbjct: 5 NGENEVKQQKQQNKQKGTKKKNKKSKKDV 33
Score = 29.3 bits (66), Expect = 3.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
+ + + ++K++ K+K KKK KK KK+
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDV 33
Score = 28.1 bits (63), Expect = 6.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
NE + + K++K++ K+K KKK KK K+ + +
Sbjct: 2 MNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDA 38
Score = 28.1 bits (63), Expect = 6.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ + + K++K++ K+K KKK + KK +
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDD 35
Score = 28.1 bits (63), Expect = 7.5
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
Q N+KKKKK KKKKKK + +
Sbjct: 50 AENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQ 91
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 35.4 bits (81), Expect = 0.037
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 255 RPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+P S+ P K+ R S+ EK +KK KK KKK+KK+K+K+++ KKKE +
Sbjct: 165 KPLADSEKLPVQKH-RNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVE 223
Query: 315 E 315
Sbjct: 224 G 224
Score = 35.0 bits (80), Expect = 0.055
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
EKK KK KKK+KK+K+K++ K KKK+ E K
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 33.1 bits (75), Expect = 0.19
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 259 VSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
VS P + D KK K+KKKK++K+K++KKKKKK +
Sbjct: 254 VSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGG 309
Score = 31.6 bits (71), Expect = 0.61
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ ++K KKK KK+K+K++ K KKK+ + K
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 30.8 bits (69), Expect = 0.91
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
P +G+ +K KK KKK+KK+K+K++ K K+ + +
Sbjct: 187 PEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 30.4 bits (68), Expect = 1.3
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
D P D ++ + K KKK ++K+K++KKKKKK + + E+ N
Sbjct: 257 TAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQN 316
Query: 318 G 318
G
Sbjct: 317 G 317
Score = 30.4 bits (68), Expect = 1.6
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETI 308
KK KK +KK+K+K++ K KKK+ + +++
Sbjct: 200 KKPKKKEKKEKEKERDKDKKKEVEGFKSL 228
Score = 30.0 bits (67), Expect = 1.8
Identities = 7/37 (18%), Positives = 28/37 (75%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ +++ +K K++KKK++K+K+ +++ ++ + ++++
Sbjct: 89 RHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDI 125
Score = 30.0 bits (67), Expect = 1.8
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 261 DLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
DL+ LK L Q + ++++ +++ +K K++KKK++K+K+ +
Sbjct: 65 DLSVPLKVPGLPMSDQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHHS 116
Score = 29.6 bits (66), Expect = 2.7
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E++ ++ +K K++KKK++K+K+ +++ E E
Sbjct: 87 ERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDE 123
Score = 28.9 bits (64), Expect = 4.6
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
R ++ ++ +K + +KK KK KKK+KK+K++ K ++KEV G
Sbjct: 179 RNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 28.1 bits (62), Expect = 6.8
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 256 PWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKK 302
P +V L +Y +L + ++ +K ++KKK++K+K+ +++
Sbjct: 69 PLKVPGLPMSDQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 31.8 bits (73), Expect = 0.057
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 280 KKKKKN--KKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
KK+K+N + K+ KK+ KK +KKK++ I K+ EK
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEK 40
Score = 29.1 bits (66), Expect = 0.60
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
NEK + K KK+ KK +KKK+K K
Sbjct: 9 NEKLRAKRAKKRAAKKAARKKKRKLIFK 36
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 34.2 bits (79), Expect = 0.057
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KKK K+KKK KK KK+ KK IK K KE
Sbjct: 240 DNKKKEWDKQKKKYKKYKKRNNKKNYSDIKDKYAKE 275
Score = 27.7 bits (62), Expect = 9.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
E+KKK K KKK K+KK K KK +
Sbjct: 200 ERKKKLEKLKKKCKEKKCNKYCSKKCTK 227
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 32.4 bits (74), Expect = 0.058
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K+KKK K+ K + K KK +KK K+ + E E +
Sbjct: 23 KRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Score = 31.3 bits (71), Expect = 0.14
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
KK+ KKKK+ K + K KK +K+ KK E E
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEF 56
Score = 31.3 bits (71), Expect = 0.16
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
D + + +KKKK+ K + K KK +KK KKK E + EE +
Sbjct: 15 DDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Score = 30.5 bits (69), Expect = 0.31
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
N KK+KK KK+ K + K KK +KK + + E
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEE 59
Score = 29.0 bits (65), Expect = 0.89
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ + + + ++ K + K KK +KK KKK + + + K + +G
Sbjct: 18 FSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTEDG 68
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 33.7 bits (77), Expect = 0.065
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+P+ +KKKK K KK K K KK + KKK ++
Sbjct: 83 KPATTAVEKKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 32.1 bits (73), Expect = 0.23
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+K +KKKK K KK K K KK E KK E N
Sbjct: 82 RKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAREGWNN 119
Score = 31.0 bits (70), Expect = 0.65
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 247 SVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ ++E + D Y+ L + G ++K +KKKK K KK K K K+
Sbjct: 47 LISSESELNNFNYGDGDNSHDYEVLVTGNTGISWRRKPATTAVEKKKKGKSKKNKLKGKK 106
Query: 307 TIKKKEEKE 315
KK+ +E
Sbjct: 107 DEDKKKARE 115
Score = 28.6 bits (64), Expect = 3.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++K +KKKK K KK K K KK+ KKK + N
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAREGWN 118
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 34.3 bits (79), Expect = 0.074
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 264 PRLK----YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
P LK D L + + N K++KN K K+++K + + E+
Sbjct: 199 PHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELED 252
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 34.3 bits (79), Expect = 0.085
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKK---KKKKKKETIKKKEE 313
D R + + K K +K KK K +K K K+ KK E
Sbjct: 766 DSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 32.8 bits (75), Expect = 0.25
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 250 GKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
K F P D R + + ++ + +K KK K +K K K+ KKK
Sbjct: 759 KKVNFEP----DSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 32.8 bits (75), Expect = 0.26
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
EKK K KK +K KK K +K K K
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAA 807
Score = 32.4 bits (74), Expect = 0.39
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
P +KK K KK +K KK K +K K ++
Sbjct: 765 PDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKR 805
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 32.8 bits (75), Expect = 0.094
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+E +++ + K + K+KKK++ K K E K K E
Sbjct: 107 DETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEP 143
Score = 32.0 bits (73), Expect = 0.20
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 268 YDRLTRPSQGNEKKKK--KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ L+ E+ ++ ++ +++ + K + K+KKK+E K K EKE
Sbjct: 88 FRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKE 137
Score = 31.6 bits (72), Expect = 0.23
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
+ + + K + K+KKK++ K K +K+K +T KK
Sbjct: 110 EQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
Score = 30.9 bits (70), Expect = 0.41
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ K ++K+KKK++ K K +K+K K E K K K
Sbjct: 115 PETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 29.3 bits (66), Expect = 1.6
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ + + + + K + K+KKK++ K +K++ K
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKT 141
Score = 29.0 bits (65), Expect = 2.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
Q + + K K+KKK++ K K +K+K K KK
Sbjct: 110 EQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 33.5 bits (77), Expect = 0.10
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
KKKKK KKK KK K KK K++K +K K+ +
Sbjct: 255 VKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQ 290
Score = 31.2 bits (71), Expect = 0.64
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 278 NEKKKKKNKKKKKKKKKKKK---KKKKKKKKETIKKKEEK 314
+KKKKK KK KK K KK K++K + K ++ E+
Sbjct: 255 VKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
Score = 29.7 bits (67), Expect = 2.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+ + KK K KK K++K + K KK +++E ++KK
Sbjct: 259 KKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK 298
Score = 27.3 bits (61), Expect = 9.4
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K KKKKKKKKK KK K K+ K+ + V
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARV 284
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 31.8 bits (73), Expect = 0.11
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
KKK+K + K + K+ KK +++K + +K
Sbjct: 62 KKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 31.4 bits (72), Expect = 0.12
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+KKK+KK+ K + K+ KK T+++++ +
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKAR 89
Score = 27.9 bits (63), Expect = 2.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+KK+KK K + K+ KK +++K +K
Sbjct: 62 KKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 33.1 bits (76), Expect = 0.11
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ +++++ KKK+ K K K+ KKKKKK+ K K
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPK 114
Score = 33.1 bits (76), Expect = 0.13
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ Q E+ KKK + K K K+ KKKKKK K
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAP 118
Score = 31.6 bits (72), Expect = 0.38
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ KKKK+ K K K+ KKKKKK ++ K +
Sbjct: 81 EERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRP 120
Score = 29.3 bits (66), Expect = 2.3
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
KKKK K K K + KKK E I +
Sbjct: 100 KKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDS 136
Score = 29.3 bits (66), Expect = 2.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
S E+ +K+ +++++ KKKK+ K K K+ KKK
Sbjct: 68 SDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKK 104
Score = 28.9 bits (65), Expect = 3.4
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
P +E++ +K +++++ KKKK+ K K K+ T KKK++
Sbjct: 66 PESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKD 106
Score = 28.5 bits (64), Expect = 3.7
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KKKK K K + KKK ++ +
Sbjct: 102 KKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSP 137
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 33.8 bits (78), Expect = 0.13
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K K KKK K + KK K +K+
Sbjct: 80 KTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKD 115
Score = 33.4 bits (77), Expect = 0.17
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ KKK K K K KKK K + KK EK+
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKK 109
Score = 32.7 bits (75), Expect = 0.24
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KKK K K K KKK K + + K +++
Sbjct: 75 PKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNA 111
Score = 32.3 bits (74), Expect = 0.31
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
KK K K K KKK K E K+ ++ N
Sbjct: 71 ESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKN 110
Score = 32.3 bits (74), Expect = 0.33
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 261 DLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
T + + K K KKK K + KK +K+ K++
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDD 117
Score = 32.3 bits (74), Expect = 0.37
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K K KKK K + KK E ++ +
Sbjct: 80 KTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDD 116
Score = 31.9 bits (73), Expect = 0.41
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ D T + T+ + K KKK K + KK +KK + +
Sbjct: 65 DTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
Score = 30.7 bits (70), Expect = 1.0
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K K KKK K + K+ KK +
Sbjct: 79 TKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKD 115
Score = 30.7 bits (70), Expect = 1.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
++ + KKK K K KKK K + ++ KK E+K
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNA 111
Score = 30.3 bits (69), Expect = 1.3
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
E K K K K K KKK K+ + ++ E
Sbjct: 71 ESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKN 110
Score = 30.0 bits (68), Expect = 2.1
Identities = 11/69 (15%), Positives = 17/69 (24%)
Query: 246 ASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
V + +D + + K KKK K + KK +KK
Sbjct: 52 IDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNA 111
Query: 306 ETIKKKEEK 314
Sbjct: 112 LDKDDDLNY 120
Score = 29.6 bits (67), Expect = 2.3
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K KK K + KK +KK + K+++
Sbjct: 88 AKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDID 125
Score = 29.6 bits (67), Expect = 2.3
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K K KKK K + KK ++ ++ ++N
Sbjct: 82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLN 119
Score = 29.6 bits (67), Expect = 2.5
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K + KKK K K K KKK + E++
Sbjct: 63 VKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDS 102
Score = 28.4 bits (64), Expect = 5.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
S E ++ KKK KK K K K KE IK+ E
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALES 44
Score = 28.0 bits (63), Expect = 7.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K + +++ KKK KK K K K I K+E KE
Sbjct: 3 TASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKE 40
Score = 28.0 bits (63), Expect = 7.3
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KKK K++ KK +KK K +K +
Sbjct: 91 PAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
Score = 28.0 bits (63), Expect = 7.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
T+ E++ KK KK K K K K++ KE ++ K++
Sbjct: 6 TKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKT 48
Score = 27.7 bits (62), Expect = 10.0
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K KK K K K K++ K+ + + ++ +V
Sbjct: 19 KLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQV 55
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 32.2 bits (74), Expect = 0.13
Identities = 13/36 (36%), Positives = 27/36 (75%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E ++ K +KKK+ K+KK+++K++K++ + KKK +
Sbjct: 94 EHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKH 129
Score = 29.9 bits (68), Expect = 0.84
Identities = 12/36 (33%), Positives = 28/36 (77%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K + + K++KKK+ K+KK+++K++K +K++++K
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKA 127
Score = 29.1 bits (66), Expect = 1.5
Identities = 11/32 (34%), Positives = 26/32 (81%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
K++KK + K+KK+++K++K++ K++K+ K +
Sbjct: 99 KQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 32.4 bits (74), Expect = 0.13
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK-KETIKKKEEKEV 316
+ ++ K+ ++K+ K KK+KK+KK+KK E + KK+ +
Sbjct: 95 SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKT 138
Score = 31.3 bits (71), Expect = 0.30
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
E+ +K+ K+ K+ ++K+ K KK+KKE +KK
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 29.7 bits (67), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
EK+ K KK+KK+KK+KK +K KKK T K
Sbjct: 108 EKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTT 143
Score = 29.3 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E +K++ + K+ ++K+ K KK+KK++ KK EK
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEK 129
Score = 29.3 bits (66), Expect = 1.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K + ++ K K+KK+KK+KK +K KKK K K+
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKK 145
Score = 27.4 bits (61), Expect = 5.9
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 279 EKKKKKNKKKKKK-----KKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ KK+K +KK+KK KKK K K K+ KK K+ G
Sbjct: 113 KAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEG 157
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 33.7 bits (77), Expect = 0.13
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
++ + KK ++ KK K+T KK E E
Sbjct: 1183 QRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESET 1219
Score = 29.8 bits (67), Expect = 2.6
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++K + + + KK ++ KK KK +K
Sbjct: 1174 KAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASE 1216
Score = 29.4 bits (66), Expect = 3.0
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
Q + + KK ++ KK KK K+ + + +E G
Sbjct: 1183 QRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYG 1225
Score = 28.3 bits (63), Expect = 6.2
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
R + KK ++ KK KK KK + EE
Sbjct: 1178 AREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEE 1222
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 33.6 bits (77), Expect = 0.14
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K N KK KKK K+ K + K+EE+E
Sbjct: 856 DQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERE 895
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 33.9 bits (78), Expect = 0.14
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
N K + ++K KKKKKK+KKK+E K++E+ +
Sbjct: 729 NGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARI 767
Score = 32.4 bits (74), Expect = 0.40
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+GN + N++K ++ + KK+K K+ K E E++
Sbjct: 1543 KGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAELD 1584
Score = 31.6 bits (72), Expect = 0.65
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
G + + K + ++K KKKKKK+KKK+++ ++K E+
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEI 769
Score = 30.1 bits (68), Expect = 2.0
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKE 312
KKKKKK+KKK+++ K+++K I+ E
Sbjct: 745 TKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 29.7 bits (67), Expect = 2.5
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + K + ++K KKKKKK+KKK+++ K+EEK
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEE----YKREEKA 765
Score = 28.1 bits (63), Expect = 7.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ NKK +KKK +KK + + +EEKE
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKE 1529
Score = 28.1 bits (63), Expect = 7.9
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 244 FLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
F S + K FR W D + S + KKKK K+KKK+++ K+++K + +
Sbjct: 715 FDISGLMKKIFRNWNGKD------AEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Query: 304 KKET 307
E
Sbjct: 769 IAEA 772
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 33.7 bits (77), Expect = 0.15
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 288 KKKKKKKKKKKKKKKKKKETIKK 310
+KKKKKKK K+KKKKK +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 32.9 bits (75), Expect = 0.27
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+KK KKKK K+KKKKK ++ K+ ++ EE
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIHALENIEE 715
Score = 31.4 bits (71), Expect = 0.78
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
G+ KKKKK K K+KKKKK ++ K+ E I++
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQIHALENIEE 715
Score = 29.8 bits (67), Expect = 2.0
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KKKKKKK K+KKKKK ++ + I E E
Sbjct: 685 KKKKKKKSKEKKKKKNREASKQIHALENIE 714
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 33.3 bits (76), Expect = 0.15
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
G E K KK K KKK KK KKK+ K+ K+ ++ E ++
Sbjct: 141 GIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESED 179
Score = 32.1 bits (73), Expect = 0.41
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ KK K KKK KK KKK+ K+ K E + E++
Sbjct: 144 TKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDE 180
Score = 31.0 bits (70), Expect = 0.78
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ K KK K KKK KK KKK+ KE+ K +E+E
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESES 177
Score = 29.0 bits (65), Expect = 3.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K KK KKK KK KKK+ K+ K + + + E E
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDE 180
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 32.7 bits (75), Expect = 0.15
Identities = 12/37 (32%), Positives = 30/37 (81%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E+KK + K++ ++K++++ +++++KKKE ++KE +E
Sbjct: 30 ERKKLEEKREGERKEEEELEEEREKKKEEEERKEREE 66
Score = 28.9 bits (65), Expect = 3.0
Identities = 14/51 (27%), Positives = 37/51 (72%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+L+ + R + E+++++ +KK ++K++ ++K++++ ++E KKKEE+E
Sbjct: 10 KLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 30.8 bits (70), Expect = 0.15
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K + + KKKKKKKKKK + + K E
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDV 51
Score = 30.4 bits (69), Expect = 0.27
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKK 303
KKKKK KKKK + K KK
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 29.6 bits (67), Expect = 0.41
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KKKKKKKKKK + K + ++ E
Sbjct: 24 KKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 29.6 bits (67), Expect = 0.49
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKE 306
KKKK KKKKK + K KK E
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATAE 49
Score = 29.3 bits (66), Expect = 0.55
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
E K KKKKKKKK + K KK T
Sbjct: 19 EADLVKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 29.3 bits (66), Expect = 0.56
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K KKKKKKKKKK + KK E
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAED 50
Score = 28.1 bits (63), Expect = 1.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKE 306
KKK KKKKKK + K KK
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATA 48
Score = 27.7 bits (62), Expect = 2.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 290 KKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KKKKKKKKKK + K ++
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAED 50
Score = 27.3 bits (61), Expect = 2.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K + KKKKKKKKKK ++T + K+
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATA 48
Score = 27.3 bits (61), Expect = 3.3
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+KKKKK K + K KK + E E
Sbjct: 26 KKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
Score = 26.9 bits (60), Expect = 3.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
KKKKKKKKKK + KK ++V
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAEDV 51
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 31.9 bits (73), Expect = 0.18
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+ +K+ K K++K+++ ++K+KE +K++
Sbjct: 122 ELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 27.3 bits (61), Expect = 8.5
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
EV +L + D L E K K +K+++ ++K+K+ K++ K
Sbjct: 110 EVEELDEEEQIDEL----LEKELAKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 33.3 bits (77), Expect = 0.19
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ K+ K +++++ +++++KKKKK+ +K +EV
Sbjct: 133 PKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREV 176
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 33.0 bits (76), Expect = 0.19
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
E++ K+ + +K+ + +KK +KK KK K K+E+ +
Sbjct: 74 YEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALA 113
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.5 bits (77), Expect = 0.19
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 259 VSDLTPRLKYDRLTRPSQGNEKKK---KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
V P R S G K KK KK+ + KKKKK +K+T +KK+ K
Sbjct: 1281 VQYSPPPPS-KRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKT 1339
Score = 32.7 bits (75), Expect = 0.28
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K K K K +K K KKK+KKKKK + KK +
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNS 1198
Score = 32.3 bits (74), Expect = 0.36
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++ K K K K K +K K KKK+KKKK++ K +K
Sbjct: 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKK 1191
Score = 32.3 bits (74), Expect = 0.37
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K K K K K +K K KKK+KKKKK K K+ V
Sbjct: 1159 KSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGN 1197
Score = 31.9 bits (73), Expect = 0.53
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
EK+ K ++ K K K K K +K K K+ KKK++ +
Sbjct: 1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSAD 1187
Score = 31.6 bits (72), Expect = 0.61
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 261 DLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
+ K RL ++G K +K K KKK+KKKKK K KK +
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 31.6 bits (72), Expect = 0.72
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++++ K+K K K K +K K KKK+KK+ ++ +
Sbjct: 1153 AKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSK 1190
Score = 31.2 bits (71), Expect = 0.79
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
++ K K K K +K K KKK+KKKKK + K ++ V G
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 31.2 bits (71), Expect = 0.96
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKK---KKKKKKETIKKKEEKE 315
+ + P++ KK+ + KKKKK +KK KKK K + +
Sbjct: 1300 SKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQS 1349
Score = 30.8 bits (70), Expect = 1.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K K K K KKK+KKKKK K K+ K V+
Sbjct: 1164 GKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
Score = 30.4 bits (69), Expect = 1.7
Identities = 17/63 (26%), Positives = 25/63 (39%)
Query: 253 EFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
E E ++ + T+ +K K KK+KKKKK K KK K+ +
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
Query: 313 EKE 315
E
Sbjct: 1203 SDE 1205
Score = 28.5 bits (64), Expect = 6.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 260 SDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
S T + RL +KKKK KK +KKK K + K+ + + + +
Sbjct: 1303 SSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPR 1357
Score = 28.1 bits (63), Expect = 8.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
E+ ++K K+++ K K K K K +K +KKKE+K+
Sbjct: 1145 EEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKS 1184
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype
PREFRAN. This family is the long protein of a novel
CRISPR subtype, PREFRAN, which is most common in
Prevotella and Francisella, although widely distributed.
The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the
helicase Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 33.3 bits (76), Expect = 0.20
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 254 FRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKK 298
+ + V + P +G KK+K +K KK KK+
Sbjct: 367 YGNYNVIRTALEEYIKKQIEPRKGKSKKEKYEEKVKKVVKKQDYL 411
Score = 27.9 bits (62), Expect = 9.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
E KK+ + +K K KK+K ++K KK + + +N
Sbjct: 378 EEYIKKQIEPRKGKSKKEKYEEKVKKVVKKQDYLSIQFIN 417
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.8 bits (75), Expect = 0.20
Identities = 9/37 (24%), Positives = 25/37 (67%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K + K+K K ++ K+K++K+ +++ +K+ +K++
Sbjct: 271 KPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLA 307
Score = 30.8 bits (70), Expect = 0.90
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
S+ K K+K K ++ K+K++K+ ++E ++K+ K+
Sbjct: 264 SEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKK 304
Score = 29.3 bits (66), Expect = 3.0
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ + NK + K+K K ++ K+K++KE ++ +E++
Sbjct: 262 FESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQL 302
Score = 28.1 bits (63), Expect = 6.9
Identities = 10/34 (29%), Positives = 25/34 (73%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ K+K K ++ K+K++K+ +++ K+++ +KKK
Sbjct: 274 RPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLA 307
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 32.8 bits (75), Expect = 0.21
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEE 313
K KK KKKKKKKKK++K E + E
Sbjct: 274 KFKKPKKKKKKKKKRRKDLDEDELEPEA 301
Score = 32.4 bits (74), Expect = 0.30
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ KK KKKKKKKKK++K ++ ++ + E +
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSS 307
Score = 31.7 bits (72), Expect = 0.56
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ + K KK KKKKKKKKK++K + E + E +
Sbjct: 267 YDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSD 308
Score = 31.3 bits (71), Expect = 0.77
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKK 299
K KK KKKKKKKKK++K
Sbjct: 268 DVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 30.9 bits (70), Expect = 0.88
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KK K ++KKK+ ++KK +K+KE + +++ G
Sbjct: 96 KKSKKRQKKKEAERKKALLLDEKEKERAAEYTSEDLAG 133
Score = 28.2 bits (63), Expect = 7.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
Q + K+K ++ ++K K ++K+++ K IK E +
Sbjct: 46 QEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDD 85
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 32.0 bits (73), Expect = 0.23
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+KKKKN+ K +K+ K+K +KKK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKK 27
Score = 30.5 bits (69), Expect = 0.66
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKK 305
KKKK K +K+ K+K +KKK
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 28.2 bits (63), Expect = 4.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKK 305
KKK ++ K +K+ K+K +KKK
Sbjct: 4 KKKNRSSNYKVNRKRLKRKDRKKKIN 29
Score = 27.8 bits (62), Expect = 6.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
+KK K + K +K+ K+K +K+ I
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINIIG 32
Score = 27.4 bits (61), Expect = 7.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKET 307
+KKK + K +K+ K+K +KK+
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKI 28
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 32.3 bits (74), Expect = 0.23
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
S E++KKK KKK KKKK KK K
Sbjct: 175 SNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 31.9 bits (73), Expect = 0.30
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
K ++KKKKKKK KKKK KK K
Sbjct: 174 KSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 31.5 bits (72), Expect = 0.37
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ KK +++KKKKKKK KK+ +KK
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 30.4 bits (69), Expect = 0.96
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+KK +++KKKKKKK KKKK KK + K
Sbjct: 172 KKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMK 204
Score = 30.0 bits (68), Expect = 1.4
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K+ + KKK +++KKKKKK++ KKK+ K+V
Sbjct: 164 KEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVA 199
Score = 29.6 bits (67), Expect = 1.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
+ + E+KKKK KK KKKK KK K
Sbjct: 173 KKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 28.8 bits (65), Expect = 3.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
N +++K KKKKK KKKK KK + I
Sbjct: 176 NNAEEEKKKKKKKSAKKKKLKKVAAVGMKAIS 207
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 33.1 bits (76), Expect = 0.23
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E KK+ K ++K ++ + + +KK+++ E K K +
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKA 136
Score = 32.3 bits (74), Expect = 0.36
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
EKK + +K+ K+ + + K ++ IK+ E++ N
Sbjct: 415 KEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTN 454
Score = 31.5 bits (72), Expect = 0.60
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++K + + + +KK+++ +K K K + KK K+ +
Sbjct: 105 KKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYD 145
Score = 31.5 bits (72), Expect = 0.69
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
G E + + + ++ KK+ KK ++K ++ + I+KKEE+
Sbjct: 87 GEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEE 124
Score = 29.2 bits (66), Expect = 3.2
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
E + + + KK+ KK ++K ++ + + E +++ EK N
Sbjct: 91 IEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKN 130
Score = 28.4 bits (64), Expect = 5.5
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ + +KK +K +K+ K+ + IK E++
Sbjct: 408 EDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKE 444
Score = 28.1 bits (63), Expect = 7.2
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ ++ K+ KK ++K ++ + + +KKE +K + +
Sbjct: 95 AQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNK 131
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 32.3 bits (74), Expect = 0.23
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 280 KKKKKNKKKKK--KKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KK+K ++ K+ K KKK KKK++ K+ E V
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKE 45
Score = 28.1 bits (63), Expect = 5.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
++ + K+ K KKK KKK+K K
Sbjct: 10 RQELAVQVAKQAKAKKKANKKKRKIYFK 37
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 32.1 bits (73), Expect = 0.24
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K KK K +KKK KK KKKKK+KE + + +E
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEE 84
Score = 30.9 bits (70), Expect = 0.52
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
KK KKK +KKK KK KKKKKE + E
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEE 84
Score = 30.2 bits (68), Expect = 1.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E KK KKKK +KKK KK KKK+ K++ +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 28.2 bits (63), Expect = 4.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ K KKKK +KKK KK KK+ +K+E E+
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELA 81
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 30.3 bits (69), Expect = 0.24
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + K +KK + +K +K+ KK T K K++K+
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNPTWKSKKKKD 34
Score = 27.6 bits (62), Expect = 2.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
EKK ++ +K +K+ KK K KKKK+
Sbjct: 7 EKKVAEHHRKLRKEAKKNPTWKSKKKKD 34
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 32.0 bits (73), Expect = 0.25
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
PS KKK+ +K KK KKK K+K E KK E +
Sbjct: 46 PSPKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDD 87
Score = 29.3 bits (66), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K+ K K+ +K KK KKK KE + ++E+K +
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPES 85
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 32.5 bits (74), Expect = 0.27
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++ D T +L + + + K K +K K+++ +KK+K++ + KE +K E K
Sbjct: 377 KLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 30.9 bits (70), Expect = 0.98
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKK 303
E+ +KK K++ + K+K++K ++KK
Sbjct: 410 EENEKKQKEQADEDKEKRQKDERKK 434
Score = 29.0 bits (65), Expect = 3.7
Identities = 10/40 (25%), Positives = 28/40 (70%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + ++ + K K++K K+++ +KK+K++ + K+K +K+
Sbjct: 391 ETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKD 430
Score = 28.6 bits (64), Expect = 4.5
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+E + + K K++K K+++ +KK+KE + +EK
Sbjct: 388 VKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKR 427
Score = 27.8 bits (62), Expect = 7.8
Identities = 7/29 (24%), Positives = 21/29 (72%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
+ +++ +K +K++ + K+K++K ++KK
Sbjct: 406 KLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 32.7 bits (75), Expect = 0.27
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 248 VVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
+ K F P+ Y Q EK+ K + K K +K K ET
Sbjct: 744 LRVKGGFGDELGCCNNPKCNYTE----KQKKEKESKSELEALKGVGAKTAEKLKDAGVET 799
Query: 308 IKKKEEKEVN 317
+ + +
Sbjct: 800 VTDLTAADPD 809
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 31.6 bits (72), Expect = 0.27
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E K+ + +KK K+K ++ K K KK++ E K+KEE+
Sbjct: 53 DESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEER 93
Score = 30.4 bits (69), Expect = 0.66
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
KK K+ ++ K K KK++ +K+K+K+E K
Sbjct: 66 KKAKEKLRRDKLKAKKEEAEKEKEKEERFMKA 97
Score = 30.4 bits (69), Expect = 0.69
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 288 KKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+KK K+K ++ K K KK+E K+KE++E
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEE 92
Score = 29.3 bits (66), Expect = 1.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+K + K K KK++ +K+K+K+++ + EKE
Sbjct: 68 AKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKE 104
Score = 28.9 bits (65), Expect = 1.8
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
RP +G +K K+K ++ K K KK++ +K+K+K++ +K E E
Sbjct: 61 RP-EGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAE 102
Score = 28.5 bits (64), Expect = 3.2
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
EK ++ K KK++ +K+K+K+++ K + ++E+
Sbjct: 70 EKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKER 105
Score = 28.1 bits (63), Expect = 3.9
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKK--KKKKETIKKKEEKEV 316
+L+ D+L + EK+K+K ++ K + +K++ + KKK E KEEK++
Sbjct: 71 KLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKI 124
Score = 27.7 bits (62), Expect = 4.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+KK K K ++ K K KK++ +K+K+KE K E
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEA 101
Score = 27.0 bits (60), Expect = 9.8
Identities = 9/37 (24%), Positives = 26/37 (70%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+K +++K K KK++ +K+K+K+++ + + + E++
Sbjct: 70 EKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERA 106
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 31.9 bits (73), Expect = 0.29
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
E+K+K+ KKK K +K K+ +K+ + K + V
Sbjct: 155 LEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVA 194
Score = 30.4 bits (69), Expect = 0.80
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 257 WEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
W+ +D+ +L+ R R + KKK K +K K+ +KK K K +KK
Sbjct: 146 WKYADVVAKLEEKRKER-AAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 32.6 bits (75), Expect = 0.31
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
L P + +K KKN KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 32.0 bits (73), Expect = 0.32
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
KK K+ KKK K +K K KK KK K +K++
Sbjct: 141 KKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDI 177
Score = 28.9 bits (65), Expect = 3.5
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKK---KETIKKKEEKEV 316
N+K K+++KKK K +K K KK KK K +KK + ++
Sbjct: 140 NKKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKL 181
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 31.5 bits (72), Expect = 0.32
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 273 RPSQGNE---KKKKKNKKKKKKKKKKKKKKKKKKKKE 306
R S+ E K+ N K + KKK + K++
Sbjct: 97 RKSRCREDFLKRVAANDAIKAEAKKKGELPSTKRQPA 133
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 32.3 bits (74), Expect = 0.33
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+K K K K ++K K + IKK +
Sbjct: 453 DKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDF 488
Score = 31.2 bits (71), Expect = 0.90
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
+P +++K K +K KK KE
Sbjct: 456 KNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFET 494
Score = 27.7 bits (62), Expect = 8.7
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
K ++K K +K KK + IK+
Sbjct: 460 FIKLILLSNNSQEKAVLKLLQKIKKNNDFIKE 491
Score = 27.7 bits (62), Expect = 9.9
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
++ K +K KK K+ + K +E
Sbjct: 462 KLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQE 501
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the parasitophorous
vacuole membrane. Members have an initial hydrophobic,
Phe/Tyr-rich, stretch long enough to span the membrane,
a highly charged region rich in Lys, a second putative
transmembrane region and a second highly charged, low
complexity sequence region. Some members have up to 100
residues of additional C-terminal sequence. These genes
have been shown to be found in the sub-telomeric regions
of both Plasmodium falciparum and P. yoelii chromosomes.
Length = 82
Score = 29.9 bits (68), Expect = 0.33
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
+ KKKK KK KK +KKKK KKK
Sbjct: 24 NNNVVAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 29.1 bits (66), Expect = 0.71
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
N KKK KK KK +KKKK KKK
Sbjct: 25 NNVVAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.1 bits (58), Expect = 8.5
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
P N KK K KK KK +KKKK KK
Sbjct: 21 PGLNNNVVAKKKKLKKLKKIDDDLEKKKKNKK 52
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 31.4 bits (72), Expect = 0.35
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 285 NKKKKKKKKKKKKKKKKKKKK 305
+KKK KK KK+K+K++K+ +K
Sbjct: 13 DKKKAKKAKKEKRKQRKQARK 33
Score = 31.4 bits (72), Expect = 0.39
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKK----KKETIKKKEEK 314
++KK KK KK+K+K++K+ +K K+ + K EK
Sbjct: 13 DKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEK 53
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 31.5 bits (72), Expect = 0.36
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETI 308
KK+++N KK+K KK KKKKK KKK +
Sbjct: 178 KKREENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 29.6 bits (67), Expect = 1.7
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+K+++ K +KK+K+K+ KKK+ +K E + K E+ +
Sbjct: 13 RKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKS 50
Score = 29.2 bits (66), Expect = 2.1
Identities = 12/37 (32%), Positives = 27/37 (72%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E++++K +++K +KK+K+K+ KKK+ + + +E K
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKN 45
Score = 28.8 bits (65), Expect = 2.6
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKK 301
N KK+K +KK KKKKK KKK +
Sbjct: 183 NLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 28.8 bits (65), Expect = 2.7
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+EK KK K+K+K+KKK KK+ K++K++ KKK E+
Sbjct: 140 DEKLLKKALKRKEKQKKKSKKEWKERKEKVEKKKAER 176
Score = 27.7 bits (62), Expect = 6.8
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
K+K+K KKK KK+ K++K+K +KKK E KK+EE
Sbjct: 149 KRKEKQKKKSKKEWKERKEKVEKKKAERQKKREE 182
Score = 27.7 bits (62), Expect = 8.1
Identities = 14/35 (40%), Positives = 28/35 (80%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+++ +K++++K +KK+K+K+ KKKE +K E +EV
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEV 43
Score = 27.3 bits (61), Expect = 8.9
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++ ++K++++K +KK+K+K+ KK+ +K E E
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEV 43
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 30.3 bits (69), Expect = 0.38
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
E++++K K+K + KKKKK+K +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAK 57
Score = 29.5 bits (67), Expect = 0.69
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
E K+K ++ KKKKK+K KKK+ +
Sbjct: 36 ELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 28.8 bits (65), Expect = 1.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
K+K KKKKK+K KKK+ +
Sbjct: 36 ELKQKADEGNNSGKKKKKRKAKKKRDEA 63
Score = 28.4 bits (64), Expect = 1.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
++K + KKKKK+K KKK+ +
Sbjct: 38 KQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 27.6 bits (62), Expect = 2.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+++++ + K+K + KKKKK+K K+ E
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 26.8 bits (60), Expect = 4.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
+ + N KKKKK+K KKK+ + T
Sbjct: 40 KADEGNNSGKKKKKRKAKKKRDEAGPAST 68
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 31.5 bits (72), Expect = 0.38
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
EK+KKK K++KK K++K+K ++
Sbjct: 97 EKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 29.9 bits (68), Expect = 1.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKET 307
+++K KKK K++KK K++K+K E
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEE 121
Score = 29.5 bits (67), Expect = 1.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+++K+KKK K++KK KE +K EE
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 28.8 bits (65), Expect = 2.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
EKKK +K++KK K++K+K ++ + +EK
Sbjct: 99 EKKKAMSKEEKKAIKEEKEKLEEPYGYCLVDGHKEK 134
Score = 28.8 bits (65), Expect = 3.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+++K+KKK K++KK + K+K E+
Sbjct: 91 YQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 30.3 bits (69), Expect = 0.39
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K+ K+++K +++++ K+ K K+E I++K EK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEK 32
Score = 29.5 bits (67), Expect = 0.71
Identities = 7/32 (21%), Positives = 24/32 (75%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+++K++ K +++++ K+ K K+++ +E ++K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEK 32
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 31.4 bits (71), Expect = 0.40
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K +RL + E+ + + +K ++K+KKK+ ++ KE +++ E+
Sbjct: 155 KKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEE 202
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 32.0 bits (73), Expect = 0.42
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
EK K ++ ++++K++KKKK KK KET + E
Sbjct: 52 EKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 30.8 bits (70), Expect = 0.51
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
R ++ +KK K +K K K K+KK K E
Sbjct: 6 KRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 31.9 bits (73), Expect = 0.52
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++KKK KK +K+ + + KK+KE ++ EK+
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKE-LQALSEKQ 118
Score = 29.6 bits (67), Expect = 2.6
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+KKK K +K+ + + KK+K+ ++++ V
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHV 121
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 31.9 bits (72), Expect = 0.54
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++K ++ ++ K K KK+++K+K+ +KET K EEK+
Sbjct: 55 YQRKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKK 92
Score = 30.0 bits (67), Expect = 2.0
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
+G ++++ K K KK+++K+K+ +K+ + K KK
Sbjct: 58 KGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKST 94
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 30.6 bits (70), Expect = 0.56
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K+KK KKKKKK+ + ++KKKK +K+++K V
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAV 117
Score = 29.4 bits (67), Expect = 1.3
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K+KKK KKKKK+ + ++KKKK E K+ ++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 27.9 bits (63), Expect = 5.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+KKKKK K+ + ++KKKK +++KE K
Sbjct: 84 KKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 29.9 bits (68), Expect = 0.58
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKK------KKKKKKKKKKETIKKKEE 313
+ + R K K+K KKKKKKK+ + ++KKK++ E KK EE
Sbjct: 61 RKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEE 113
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 31.4 bits (71), Expect = 0.59
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ D + S ++ KK NK KK++K KK + E E
Sbjct: 131 ELDSDSDSSDSSKGKKLVNKPKKRQKYKKATIQSPTSLTEEENYNTE 177
Score = 29.1 bits (65), Expect = 4.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 289 KKKKKKKKKKKKKKKKKETIKKKEEKE 315
K KK K KK++K KK TI+
Sbjct: 143 KGKKLVNKPKKRQKYKKATIQSPTSLT 169
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is
involved in recombination. Rap (recombination adept with
plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 30.8 bits (70), Expect = 0.59
Identities = 9/33 (27%), Positives = 24/33 (72%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
K++K ++KK+K + + ++++ K +KE +K + +
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTRSD 67
Score = 27.3 bits (61), Expect = 8.1
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K++K ++KK+K + + ++ +K ++EK
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEK 61
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 31.0 bits (70), Expect = 0.60
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKK 301
EK K KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
Score = 29.9 bits (67), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKET 307
K+K KKK K KK KKK+ K+E
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKREA 231
Score = 28.0 bits (62), Expect = 6.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKK 303
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 31.0 bits (70), Expect = 0.61
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
L+R +E +K+ K+K+K++ + +K K+ ++ KK+EEK N
Sbjct: 150 LSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRR----KKQEEKRRND 193
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 31.0 bits (71), Expect = 0.62
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
EK+KKK K++KK K++K K ++
Sbjct: 98 EKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 29.5 bits (67), Expect = 2.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ +K+KKK K++KK KE K EE
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 28.7 bits (65), Expect = 2.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ +K+KKK K++KK K+E K +E
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 28.3 bits (64), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ +K KKK K++KK K++K K E
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLE 121
Score = 27.5 bits (62), Expect = 8.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
E +K+K K K++KK K++K K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.7 bits (73), Expect = 0.63
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E ++ L+ + + + + +K+ K +KK+KKKKK+K++ + K EV
Sbjct: 585 EADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEV 643
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 31.2 bits (71), Expect = 0.63
Identities = 12/36 (33%), Positives = 29/36 (80%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E KK K +++K++++++K++KK+++++E +K EE
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEA 223
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 31.3 bits (71), Expect = 0.81
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
EK N+K KKKK+K K ++KK E+E+N
Sbjct: 181 EKTAADNEKPVKKKKEKPAKVEEKKVAVAAAPPSEEELN 219
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 30.4 bits (69), Expect = 0.89
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K + K K K K K K KK +++ K+E +K E +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKRE-VKPVEPR 127
Score = 29.7 bits (67), Expect = 1.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K + K K K K K K KK E K+E K V
Sbjct: 94 KPEPKPKPKPKPKPKPVKKVEEQPKREVKPV 124
Score = 28.5 bits (64), Expect = 3.8
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ K K K K K K KK +++ K++ + ++ +
Sbjct: 96 EPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPAS 130
>gnl|CDD|222991 PHA03119, PHA03119, helicase-primase primase subunit; Provisional.
Length = 1085
Score = 31.0 bits (70), Expect = 0.91
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 77 KALLKRHL-ADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVSAKR 130
KAL K + D ET+++ +DS+V +++T + P E +A SS + KR
Sbjct: 949 KALQKLGIQPDDAETIEAFIDSIVLESITGYIRVHFPGRDREYQATSSKCIVLKR 1003
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 30.9 bits (70), Expect = 0.93
Identities = 15/43 (34%), Positives = 16/43 (37%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
DR R KK K KKK KKK+ KK K
Sbjct: 590 DRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKA 632
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 30.7 bits (70), Expect = 0.96
Identities = 8/42 (19%), Positives = 22/42 (52%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KKK++KK+++K+ K+ ++ + + +++ G
Sbjct: 174 VPGHSSDSEKKKQRKKQRRKRSKELREDDDDDEDEDDDGEGG 215
Score = 28.1 bits (63), Expect = 6.2
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKK 296
+ S +EKKK++ K+++K+ K+ +
Sbjct: 174 VPGHSSDSEKKKQRKKQRRKRSKELR 199
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 30.4 bits (69), Expect = 0.97
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETI 308
P+ + +K K KK KK KK+K+K+
Sbjct: 216 PTPQSSSPSRKRKAPKKVAKKVAAAKKRKQKRSPP 250
Score = 28.1 bits (63), Expect = 5.5
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+K+K KK KK KK++ +
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 30.5 bits (69), Expect = 0.97
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K +KK KK K K K K K K K K + KK K
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTA 125
Score = 30.5 bits (69), Expect = 0.99
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
EK K + K KK K K K K K K K K K K+
Sbjct: 86 EKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPS 122
Score = 30.1 bits (68), Expect = 1.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
P+ K+K K +KK KK K K K K K K K + K +K
Sbjct: 77 PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 29.8 bits (67), Expect = 1.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
++K K KK KK K K K K K K K + K ++
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPS 122
Score = 29.0 bits (65), Expect = 2.8
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
EKK KK K K K K K K K K + K + K +
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Score = 28.6 bits (64), Expect = 4.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K K K K +KK KK K K K K K K K + +
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 28.2 bits (63), Expect = 5.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K+K K +KK KK K K K + K + K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Score = 27.8 bits (62), Expect = 6.1
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
P + KK K K K K K K K K + K KK K +
Sbjct: 88 PKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPA 130
Score = 27.8 bits (62), Expect = 6.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
P + K K+ K +KK KK K K K K K + K + K
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 27.8 bits (62), Expect = 7.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ +KK K K K K K K K K K + + K +
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Score = 27.8 bits (62), Expect = 7.1
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+K KK K K K K K K K + K K+ K K
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPA 130
Score = 27.4 bits (61), Expect = 10.0
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+KK K K K K K K K K K + K +
Sbjct: 90 PEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 29.6 bits (67), Expect = 1.0
Identities = 10/38 (26%), Positives = 31/38 (81%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ ++K++ K+++K++K++K++K+K+ K ++K+E ++
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREK 50
Score = 29.2 bits (66), Expect = 1.5
Identities = 12/46 (26%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK-------KEEKEVN 317
+K + ++K+++K+++K++K++K+E K+ KEE+E
Sbjct: 6 DKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKR 51
Score = 28.0 bits (63), Expect = 4.0
Identities = 8/35 (22%), Positives = 25/35 (71%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
++K + ++K+++K+++K+E +K+E+++ G
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEKEKEWG 39
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 31.0 bits (70), Expect = 1.1
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+R EKK ++ ++KKKK++K K+K+ KK +KE K
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAK 44
Score = 30.6 bits (69), Expect = 1.2
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
E+KKKK +K K+K+ KK K +K+ K +
Sbjct: 19 ERKKKKEEKAKEKELKKLKAAQKEAKAK 46
Score = 30.6 bits (69), Expect = 1.3
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E++ ++ KKK++K K+K+ KK K +KE K + ++
Sbjct: 14 TEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQ 51
Score = 29.1 bits (65), Expect = 3.6
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
E+ ++K KK++K K+K+ KK K +K+ K + ++ +G
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDG 55
Score = 29.1 bits (65), Expect = 3.9
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E LT + + + EK+ KK K +K+ K K + ++ KK E+K
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKS 66
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 29.5 bits (67), Expect = 1.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K +KK ++KK + +K K ++K + ++K E++
Sbjct: 22 AKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
Score = 29.1 bits (66), Expect = 1.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K +K +++KK + +K K ++K E +K EKE
Sbjct: 22 AKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
Score = 28.0 bits (63), Expect = 3.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K K K +KK+++KK + +K K + ++K E E
Sbjct: 15 KAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYE 50
Score = 28.0 bits (63), Expect = 3.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+K +KK+++KK + +K K E + E ++
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEK 53
Score = 27.2 bits (61), Expect = 5.5
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
EKK+++ K + +K K ++K + + E ++K+ E+
Sbjct: 25 EKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEEL 61
Score = 26.8 bits (60), Expect = 7.5
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E+KK + +K K ++K + + +K ++ +++ E +
Sbjct: 28 QEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAEL 65
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 30.6 bits (70), Expect = 1.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ K + ++K+KKK+KKK KKKK + + + +V
Sbjct: 386 KQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKV 424
Score = 29.8 bits (68), Expect = 2.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET-IKKKEEKE 315
+Q ++ +KKK+KKK KKKK K + K + K+ ++
Sbjct: 390 AQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQ 431
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 29.3 bits (66), Expect = 1.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
LT + +K+ ++++ +K +K+ KK KK E
Sbjct: 90 LTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEP 126
Score = 28.9 bits (65), Expect = 2.1
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E++K + +K+ K ++++ +K +K+ + KK E +
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQG 129
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 29.1 bits (65), Expect = 1.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKK 305
KK KK ++ +KK +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 28.3 bits (63), Expect = 2.4
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKK 298
L + + ++ + K +KK+KK
Sbjct: 49 GLNKKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 28.3 bits (63), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKK 304
N+K KK + ++ +KK +KK+KK
Sbjct: 51 NKKPKKISAEEAEKKLLQKKEKKALTN 77
>gnl|CDD|193541 cd05665, M20_Acy1_IAAspH_bact, M20 Peptidases Aminoacyclase-1
indole-3-acetic-L-aspartic acid hydrolase from bacteria
and archaea. Peptidase M20 family, Bacterial and
archaeal Aminoacyclase-1 indole-3-acetic-L-aspartic acid
hydrolase (IAA-Asp hydrolase; IAAspH; IAAH; IAA
amidohydrolase; EC 3.5.1.-) subfamily. IAAspH hydrolyzes
indole-3-acetyl-N-aspartic acid (IAA or auxin) to
indole-3-acetic acid. Genes encoding IAA-amidohydrolases
were first cloned from Arabidopsis; ILR1, IAR3, ILL1 and
ILL2 encode active IAA- amino acid hydrolases, and three
additional amidohydrolase-like genes (ILL3, ILL5, ILL6)
have been isolated. In higher plants, the growth
regulator indole-3-acetic acid (IAA or auxin) is found
both free and conjugated via amide bonding to a variety
of amino acids and peptides, and via an ester linkage to
carbohydrates. IAA-Asp conjugates are involved in
homeostatic control, protection, storing and subsequent
use of free IAA. IAA-Asp is also found in some plants as
a unique intermediate for entering into IAA
non-decarboxylative oxidative pathway. IAA
amidohydrolase cleaves the amide bond between the auxin
and the conjugated amino acid. Enterobacter agglomerans
IAAspH has very strong enzyme activity and substrate
specificity towards IAA-Asp, although its substrate
affinity is weaker compared to Arabidopsis enzymes of
the ILR1 gene family. Enhanced IAA-hydrolase activity
has been observed during clubroot disease in Chinese
cabbage.
Length = 415
Score = 30.2 bits (69), Expect = 1.3
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 186 GITHVLRSAAGLSTEEFTHFGIIRHVQQAGG 216
G+ V+ S +E+ T+ +R VQ+ GG
Sbjct: 348 GVKEVIPSGPFGGSEDATYL--MRRVQEHGG 376
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 30.5 bits (70), Expect = 1.4
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E ++++N+ +K +K+ +K++ +K E ++K+EE+
Sbjct: 75 KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEE 111
Score = 29.7 bits (68), Expect = 2.0
Identities = 17/61 (27%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 258 EVSDLTPRL--KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK-ETIKKKEEK 314
E+ L RL K + L R + EK++++ +KK+K+ ++K+++ +KK+++ E + +++ +
Sbjct: 83 ELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
Query: 315 E 315
E
Sbjct: 143 E 143
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP). NAP proteins
are involved in moving histones into the nucleus,
nucleosome assembly and chromatin fluidity. They affect
the transcription of many genes.
Length = 236
Score = 30.0 bits (68), Expect = 1.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+ K K KKK++ KK + TI K E
Sbjct: 152 KEGKNLTVKTVKKKQRNKKTGQTRTITKTVPAE 184
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 30.1 bits (68), Expect = 1.4
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KKKKK KKK K+ + KK + +K N
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNE 47
>gnl|CDD|222928 PHA02778, PHA02778, major capsid L1 protein; Provisional.
Length = 503
Score = 30.2 bits (69), Expect = 1.4
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 257 WEVSDLTPRL-----------KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKK 301
WEV DLT R K+ + ++K+K+ + K++++K+
Sbjct: 449 WEV-DLTERFSLDLDQFPLGRKFLFQAGLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 29.7 bits (67), Expect = 1.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
P++ +KK+ +KK++ K +KK+ +K E K KE+
Sbjct: 155 PTKLELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKEL 197
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 29.2 bits (66), Expect = 1.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKK------------KKKKKKKETIKKKEE 313
R + K + +KK+K+KKKKKKK KKK+++ + +KK EE
Sbjct: 61 RKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEE 116
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 30.0 bits (68), Expect = 1.5
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 253 EFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
F P E D TP L R RP +K +K+KKK KKK+K K+ KE ++++
Sbjct: 136 SFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREK 195
Query: 313 E 313
+
Sbjct: 196 K 196
Score = 28.1 bits (63), Expect = 6.2
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
E KK KKKK K K K K KKE
Sbjct: 209 ELMKKGKGKKKKIVKDKDGKVVYKWKKE 236
Score = 27.7 bits (62), Expect = 7.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++ KK K KKKK K K K KKE K
Sbjct: 206 LQRELMKKGKGKKKKIVKDKDGKVVYKWKKERK 238
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 30.3 bits (68), Expect = 1.5
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++K K+ K+ K + + + ++ TIK++EEK ++
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGID 836
Score = 28.0 bits (62), Expect = 7.5
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 264 PRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
PR+ + + + K + K+K K+K KE + E G
Sbjct: 768 PRMYEEASGKSVRKVNTAVLSTTIKAAARAKQKPKEKGPNDKEIKIESPSVETEG 822
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 29.6 bits (67), Expect = 1.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 285 NKKKKKKKKKKKKKKKKKKKK 305
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 28.0 bits (63), Expect = 4.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 280 KKKKKNKKKKKKKKKKKKKK 299
KK K K+ +K + KKKKKK
Sbjct: 86 SKKAKGKRSRKNQTKKKKKK 105
Score = 27.7 bits (62), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 283 KKNKKKKKKKKKKKKKKKKKK 303
K K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.7 bits (62), Expect = 6.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 282 KKKNKKKKKKKKKKKKKKKKK 302
K K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.3 bits (61), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKK 300
E KK K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 27.3 bits (61), Expect = 7.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETI 308
KK K K+ +K + KKKKK+
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKKDD 107
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 30.0 bits (68), Expect = 1.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+P + + K K KKKKK K + ++ ++ KK+ K+
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 28.8 bits (65), Expect = 3.7
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 243 KFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNE----KKKKKNKKKKKKKKKKKKK 298
KFL V + F V RLK + T+ +Q KK KK K K KKK
Sbjct: 310 KFL---VKEKNFNEERVEKYIERLKKAK-TKKTQTRLDSFFTATKKPIKKSNSKAKLKKK 365
Query: 299 KKKKKKKETIKKKEEKEVNG 318
KKK K + +E
Sbjct: 366 KKKAGASAVPKSETSQEAKS 385
Score = 28.4 bits (64), Expect = 4.8
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
T + +K K K KKKKKK K + + K +K+V
Sbjct: 346 FTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVK 392
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 30.0 bits (68), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 260 SDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
S TP + P E+ + K+K++ KK+KKKK KK K T
Sbjct: 330 STETPPPASLSHS-PPAAFERPLALSPKRKREGDKKQKKKKSKKLKLT 376
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 29.4 bits (66), Expect = 1.8
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK-KETIKKKEEKEVNG 318
+ R+ R + + K K+K + K + K +K K IK + + V
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKK 60
Score = 28.6 bits (64), Expect = 3.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKK 301
+ K K + KK KK KKKKKKK+
Sbjct: 194 HYKGDKSSAKKDKKSKKKKKKKRS 217
Score = 28.2 bits (63), Expect = 4.9
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 285 NKKKKKKKKKKKKKKKKKKKKE 306
K K KK KK KKKKKKK
Sbjct: 195 YKGDKSSAKKDKKSKKKKKKKR 216
Score = 28.2 bits (63), Expect = 5.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKK 302
+P K K+ KK KK KKKKKKK+
Sbjct: 188 KPLYTWHYKGDKSSAKKDKKSKKKKKKKRS 217
Score = 27.5 bits (61), Expect = 9.4
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKK 304
K +K KK KK KKKKKKK+
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 29.7 bits (67), Expect = 1.9
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ R ++K K +K K ++ +KK KK + + K K +
Sbjct: 331 AAKKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSI 379
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 29.8 bits (68), Expect = 2.1
Identities = 32/144 (22%), Positives = 43/144 (29%), Gaps = 51/144 (35%)
Query: 175 AGARYETPDNLGITH------------VLRSAAGLSTEEF----------------THFG 206
G R TPD G +R+ AGL EF
Sbjct: 143 TGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPES 202
Query: 207 IIRHVQQAGGSLYATVDREG---IVYTI-------------EAVRKEIGHVHKFLASVVG 250
++ G +DR Y I EA R+ + + LA V
Sbjct: 203 LMGRF--GPGQGLIMIDRGDYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVA 260
Query: 251 KTEFRPW-EVSDLTPRLKYDRLTR 273
E + W +V L R+ DRL R
Sbjct: 261 --ELKSWDDVKLLDVRV--DRLRR 280
>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 455
Score = 29.7 bits (67), Expect = 2.1
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
L RP +++ K K+ KK KK E I +
Sbjct: 192 LMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINR 231
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 29.6 bits (66), Expect = 2.2
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 278 NEKKKKKNKKKKKKK--------KKKKKKKKKKKKKETIKKKEEKEVNG 318
+K+ KK ++ ++K +++K +KK +K+++ K E+ E G
Sbjct: 106 LDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQG 154
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 29.8 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ N KK KKK K+KK+KK+ + T+K++ E+E
Sbjct: 206 SLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEE 247
Score = 28.3 bits (63), Expect = 6.3
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KK N KKK K+KK+KK+ E+ K+E +E +G
Sbjct: 212 PKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESG 249
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 28.8 bits (65), Expect = 2.2
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ T E+ +K + +KK KK K+++ KKK++K+ +K K++
Sbjct: 92 FKEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 29.8 bits (67), Expect = 2.3
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E K K + K +K K ++ K EV
Sbjct: 222 EAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEV 259
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 28.3 bits (64), Expect = 2.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
TR + + +NK ++++K K+KKKKKKK+ E
Sbjct: 56 TRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Score = 28.0 bits (63), Expect = 3.5
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKK-------KKKKKETI----KKKEE 313
R + K ++ +K K+KKKKKKK+ + ++KKKE + KK EE
Sbjct: 60 RKRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEE 114
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 29.1 bits (66), Expect = 2.3
Identities = 11/38 (28%), Positives = 27/38 (71%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+E +++ K +++K++ +K+ + + K E I+K+EE+E
Sbjct: 123 SELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEE 160
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 28.4 bits (64), Expect = 2.3
Identities = 9/34 (26%), Positives = 27/34 (79%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+K +++KK +++ K+K+++++ +E + +EE++
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERK 62
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 28.0 bits (63), Expect = 2.3
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 259 VSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
V+ K + P + E +K +++K++KK+K +KK +++ KE
Sbjct: 40 VAQYLSEFKDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 28.5 bits (64), Expect = 2.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ KK K KKK K +K +KK K++ + ++ EK
Sbjct: 25 SRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEK 60
Score = 26.9 bits (60), Expect = 7.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
++K K KK K +K +KK K++ + +K +K
Sbjct: 27 SKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEK 60
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 28.5 bits (64), Expect = 2.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
KKK K +K+ K ++KK + K+K K + KKK
Sbjct: 101 KKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 28.5 bits (64), Expect = 2.7
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKET 307
KK K K KK K KK K KK+K T
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKKRKVRT 31
Score = 28.1 bits (63), Expect = 3.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
KK KK KK K KK K KK+K + +++ K
Sbjct: 3 PAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPK 39
Score = 27.7 bits (62), Expect = 5.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
K KK KKK KK K KK K +K
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKV 29
Score = 27.0 bits (60), Expect = 8.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
K K KKK KK K KK K KK ++
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRT 31
Score = 27.0 bits (60), Expect = 8.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
+K KKK KK K KK K KK+K +
Sbjct: 3 PAKKAKKKAKKAAKAAKKGVKVKKRKVRTSV 33
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 28.0 bits (63), Expect = 2.7
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKK---KKKKKKKKKKETIKKKEEKEV 316
P + N++ K+ KKKKKKK + +KK+KK+ E +K ++K V
Sbjct: 29 PEKINDEYFKREKKKKKKKSEGEFFAEKKEKKEVSEQ-RKADQKAV 73
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 27.2 bits (61), Expect = 2.7
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
KK ++N + KK+KK +K K+ K ++ +++++
Sbjct: 24 KKDRRNPRVKKRKKYEKAVKRLKSQRRVVREED 56
Score = 26.8 bits (60), Expect = 3.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K+KK + + KK+KK +K K+ K + +EE
Sbjct: 22 KRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREED 56
Score = 26.4 bits (59), Expect = 5.1
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+K+KK+++ + KK+KK +K K+ K + E++
Sbjct: 21 RKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREED 56
>gnl|CDD|236229 PRK08303, PRK08303, short chain dehydrogenase; Provisional.
Length = 305
Score = 29.2 bits (66), Expect = 2.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 15 ALGAGPAKTGKNQRSTNSKGLSRTPGRESLDES 47
AL A P N +S +S L+R G LD S
Sbjct: 249 ALAADPDVARWNGQSLSSGQLARVYGFTDLDGS 281
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 28.9 bits (65), Expect = 2.9
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKK 305
K +K K K KK KK
Sbjct: 185 AKLSSTASSGDEKSPKSKAAPKKAGKK 211
Score = 28.2 bits (63), Expect = 4.9
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
R + ++ + ++K K K KK KK +K + +++ V
Sbjct: 180 RAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRKWDLDGDEDDDAV 226
Score = 28.2 bits (63), Expect = 5.0
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
KK +K K K K+ KK
Sbjct: 175 EGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKK 211
>gnl|CDD|177798 PLN00208, PLN00208, translation initiation factor (eIF);
Provisional.
Length = 145
Score = 28.2 bits (63), Expect = 2.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KNK K K +K+ K + +K+E I K++ +E
Sbjct: 2 PKNKGKGGKNRKRGKNEADDEKRELIFKEDGQE 34
>gnl|CDD|223625 COG0551, TopA, Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair].
Length = 140
Score = 28.3 bits (63), Expect = 3.0
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+K K +K +KK+KKK + + K E N
Sbjct: 102 KKCPKCGSRKLVEKKEKKKGVFLECSNKPCCLKVENLKN 140
Score = 27.5 bits (61), Expect = 5.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ K+KK K +K +KK+KKK E K +V
Sbjct: 98 KPKEKKCPKCGSRKLVEKKEKKKGVFLECSNKPCCLKV 135
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 29.3 bits (65), Expect = 3.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
S+ +E K NK K KK+K +++++KK K + K++K
Sbjct: 516 SETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKK 555
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 29.2 bits (65), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
KK+K+ KK K KK++K K+K + + KK
Sbjct: 566 KKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAF 602
Score = 29.2 bits (65), Expect = 3.2
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ R + +K K KK++K K+K KK K +E
Sbjct: 565 KKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAKLQET 609
Score = 28.8 bits (64), Expect = 3.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
L R + E++KKK K++ KK K KK++K KE + +K
Sbjct: 552 TELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKK 597
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 28.7 bits (64), Expect = 3.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 262 LTPRLKYDRLTRPSQGNEKKKKKNK-----KKKKKKKKKKKKKKKKKKK 305
+ ++Y R +G + KK+ + ++ K+KKKKK KKKK K
Sbjct: 56 VVVLVRYCRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 29.4 bits (67), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKE 306
+ ++ KKKKK+KK KK + +K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 28.3 bits (64), Expect = 6.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 281 KKKKNKKKKKKKKKKKKKKKK 301
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 6.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 287 KKKKKKKKKKKKKKKKKKKETI 308
+K++ KKKKK+KK KK + E I
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 27.9 bits (63), Expect = 8.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 286 KKKKKKKKKKKKKKKKKKKKET 307
K++ KKKKK+KK KK + +K
Sbjct: 734 KRRLKKKKKRKKVKKWEVEKIE 755
Score = 27.9 bits (63), Expect = 8.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 279 EKKKKKNKKKKKKKKKKKKKK 299
EK++ K KKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.9 bits (63), Expect = 9.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 283 KKNKKKKKKKKKKKKKKKKKK 303
+K + KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 28.4 bits (64), Expect = 3.2
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+ +DR Q ++K+K K +K+ + +K ++ K K E
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFEFTDGD 74
Score = 27.7 bits (62), Expect = 6.1
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K KK+K+K +K +K+ + +K + K + E
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFE 69
>gnl|CDD|144532 pfam00973, Paramyxo_ncap, Paramyxovirus nucleocapsid protein. The
nucleocapsid protein is referred to as NP. NP is is the
major structural component of the nucleocapsid. The
protein is approx. 58 kDa. 2600 NP molecules go to
tightly encapsidate the RNA. NP interacts with several
other viral encoded proteins, all of which are involved
in controlling replication. {NP-NP, NP-P, NP-(PL), and
NP-V}.
Length = 524
Score = 29.0 bits (65), Expect = 3.2
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 232 EAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTR---PSQG---------NE 279
E VR+ G V LAS +G T VS++ DR R P Q E
Sbjct: 367 EMVRRSAGKVSSTLASELGITAEEARLVSEIAAYTTDDRTNRATGPKQAQVSFLHTDQGE 426
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+++ + KK++++ K+ + + ++ K T + +
Sbjct: 427 EEQPRLSKKEERRAKQGRGEARESSKSTRLSEYTDDEPS 465
>gnl|CDD|218396 pfam05039, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP)is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 90
Score = 27.5 bits (61), Expect = 3.3
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 266 LKYDRLTRPS---QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
+ D P G K KK K + ++KKK KK+ + E +
Sbjct: 1 RRSDNALDPEVSIVGLNKGLKKFNKNEAEEKKKSSKKEAEALTEAQGRPP 50
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 29.2 bits (66), Expect = 3.4
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ + Q E+K K + K K + +K
Sbjct: 13 LKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAA 51
>gnl|CDD|187861 cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 579
Score = 29.3 bits (66), Expect = 3.4
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 255 RPWEVSDLTPRLKY-DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
D P K L N+K KK +K + KK+ K K K+ ++K E
Sbjct: 73 AGNASQDYLPTNKITYLLKTTEPLNKKIKKWFEKSYLLLESKKEILKLKNIKDVLEKNIE 132
Query: 314 K 314
K
Sbjct: 133 K 133
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 27.6 bits (62), Expect = 3.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
NE K+ K KKKK+ + + K+ K+ +K E +
Sbjct: 53 NELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAELR 91
Score = 26.8 bits (60), Expect = 7.1
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
++ + +K+ K KKKK+ + + + +K +
Sbjct: 49 QAERNELSKEIGKAKKKKEDAEALIAEVKELKDE 82
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 27.2 bits (61), Expect = 3.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKET 307
K +++K KKK KK + ++ KK+
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKV 92
Score = 26.8 bits (60), Expect = 5.3
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKK 303
+++++K+KKK KK + ++ KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
Score = 26.4 bits (59), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKK 305
K+++ K KKK KK + ++ KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
Score = 26.0 bits (58), Expect = 9.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
+K++++ KKK KK + ++ KKK
Sbjct: 68 DKEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an exchange
factor for Cdc42 and an effector of Ras1, the homolog of
the human H-Ras. Scd2/Bem1 mediates Cdc42 activation by
binding to Scd1/Cdc24 and to Cdc42. Ras1 regulates
Scd1/Cdc24/Ral1, which is a putative guanine nucleotide
exchange factor for Cdc42, a member of the Rho family of
Ras-like proteins. Cdc42 then activates the Shk1/Orb2
protein kinase. Scd1 interacts with Klp5 and Klp6
kinesins to mediate cytokinesis. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 28.0 bits (63), Expect = 3.6
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
E KKKK K K K KKKKKK +K
Sbjct: 62 EVKKKKKKSSLKSKSSSSSKKKKKKGPLQLK 92
Score = 26.8 bits (60), Expect = 8.8
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKK 305
K+ KK KKK K K KKKKKK
Sbjct: 61 KEVKKKKKKSSLKSKSSSSSKKKKKK 86
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 28.5 bits (64), Expect = 3.6
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
++ ++ + K+++ + +KKE+ KKK
Sbjct: 164 LLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|217754 pfam03836, RasGAP_C, RasGAP C-terminus.
Length = 139
Score = 28.0 bits (63), Expect = 3.7
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 279 EKKKKKNKKK---KKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+KKKK +K+K KK +KK KK K K + K+ EK V
Sbjct: 89 QKKKKFSKQKFSVKKLQKKHGKKPKFGSYKYSAKQLYEKGV 129
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 28.3 bits (63), Expect = 3.7
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++ K K+++K +KKKK +KK+ K++K ++KE +
Sbjct: 54 SAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQ 97
>gnl|CDD|165307 PHA03006, PHA03006, hypothetical protein; Provisional.
Length = 323
Score = 28.8 bits (64), Expect = 3.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+ E KK + K+ KKK+KK +K + E IKK
Sbjct: 151 KDLSKTEIIKKLKDENKELKKKQKKMEKSENLNELIKK 188
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 29.0 bits (65), Expect = 3.8
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++T P K++K K++KK ++ K +++ K ++ ++ E K
Sbjct: 2 KITVPQPFQMTKREKKKREKKSIRQSKLEEELNKLEKKEEEAECK 46
>gnl|CDD|238558 cd01138, FeuA, Periplasmic binding protein FeuA. These proteins
have predicted to function as initial receptors in ABC
transport of metal ions in some eubacterial species.
They belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct fold and ligand
binding mechanism. A typical TroA protein is comprised
of two globular subdomains connected by a single helix
and can bind their ligands in the cleft between these
domains.
Length = 248
Score = 28.5 bits (64), Expect = 3.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 266 LKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ Y+ Q E K NK+ + +K K+K K+ KE IKKK +
Sbjct: 92 VSYNSSDWEEQLKEIGKLLNKEDEAEKWLADYKQKAKEAKEKIKKKLGND 141
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 28.6 bits (64), Expect = 3.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ K + K +K K+ KK+KK K + + EV
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEKDELDDEV 52
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 29.0 bits (66), Expect = 3.8
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+K+++ K K+ + KK + +KKK+ +E V
Sbjct: 177 AQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPV 215
Score = 27.9 bits (63), Expect = 8.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
E KK +KKK+ K K+ + + I K+E
Sbjct: 192 EAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 29.2 bits (66), Expect = 3.8
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 261 DLTPRLKYDRLTRPS--QGN---EKKKKKNKKKKKKKKKKKKKKKK 301
D P K +LT PS G K K K + K KK K K
Sbjct: 165 DRQPPFKDTKLTYPSTHPGMLLLAKHKILIPSLKTRPKGKKYVKIK 210
Score = 28.4 bits (64), Expect = 5.5
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIK 309
K K K + K KK K IK
Sbjct: 187 LAKHKILIPSLKTRPKGKKYVKIKIK 212
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 28.7 bits (65), Expect = 3.9
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+ + K+KKKKKKKKKKK++ ++ +K
Sbjct: 79 ADRAEELLKEKKKKKKKKKKKEELREWMCEK 109
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 28.5 bits (64), Expect = 3.9
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E + K K+K K+ ++KK + + EK
Sbjct: 90 ELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEK 125
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 28.9 bits (65), Expect = 4.0
Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 241 VHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGN-----EKKKKKNKKKKK----- 290
+ K LA GKT+ P S T R L + G E ++ K KK
Sbjct: 773 MAKLLAD--GKTDLLPGFKSSRTGRNFKAYLVKQPDGKIGFEFEPREPKAAAAKKTAAKA 830
Query: 291 -----KKKKKKKKKKKKKKKETIKKKEEK 314
K +K KK KK KK +
Sbjct: 831 TAAAATKAEKAAAKKAPAKKTAAKKTAAR 859
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 28.5 bits (64), Expect = 4.1
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K +K++KK K++KK K E K+K E+E
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAE--KEKLEEE 122
Score = 27.7 bits (62), Expect = 6.6
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
+K++KK K++KK K +K+K +++
Sbjct: 97 QKEEKKAMSKEEKKAIKAEKEKLEEE 122
>gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase.
Length = 447
Score = 28.7 bits (64), Expect = 4.1
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 42/178 (23%)
Query: 45 DESHHFS-PPQALQASIDVVRGAGIKDADIARG----------KALLKRHLADSFETLDS 93
D S++F PQAL+A+ A I+ RG A ++R + + + LD
Sbjct: 175 DSSNNFQVTPQALEAAYQEAEAANIR----VRGVLITNPSNPLGATVQRSVLE--DILDF 228
Query: 94 TVDS---VVRQAVTTGVVKSLPDL--LAE-VEAVSSSDVSAKRSFAAQPATKALFSPDIQ 147
V +V + +G V S + +AE VEA V A+R +K L P +
Sbjct: 229 VVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGV-AERVHIVYSLSKDLGLPGFR 287
Query: 148 SGT--SYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFT 203
GT SYN V + S +S + H+L A+ LS EEFT
Sbjct: 288 VGTIYSYNDKVVTTARRMSSFTLVSSQTQ--------------HLL--ASMLSDEEFT 329
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 27.6 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKE 306
++ K +K+ K +K+KKKKKKKE
Sbjct: 60 RRPKTARKESVAAKAAEKEKKKKKKKE 86
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.9 bits (65), Expect = 4.7
Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 270 RLTRPSQGNEKK-KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
RL G E++ K+ +K+++ ++ KKK K+ +K+ E ++++ E
Sbjct: 318 RLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL 363
Score = 27.7 bits (62), Expect = 9.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E +K + KKK + +KK + +++ E +K+ EE
Sbjct: 547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 26.5 bits (59), Expect = 4.7
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K K KKK+ K +++K++++++ +K +K+ EK
Sbjct: 15 NADLLAKLKAKKKELKAEEEKREEEEEARKREERKEREKN 54
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 28.5 bits (64), Expect = 4.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E++ K KK KK K KK K+ KK K
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAK 289
Score = 28.1 bits (63), Expect = 6.4
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKK-KKKKKKKKKKKKKKETIKK 310
+R + G + KK K KK KK KK K K+ KK
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 27.7 bits (62), Expect = 7.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
KK KK K KK KK K+ K K
Sbjct: 259 GGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTK 291
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 28.5 bits (64), Expect = 4.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
E+ KKNK K+K K + KK+E K K
Sbjct: 207 EEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
>gnl|CDD|218660 pfam05620, DUF788, Protein of unknown function (DUF788). This
family consists of several eukaryotic proteins of
unknown function.
Length = 166
Score = 28.1 bits (63), Expect = 4.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 266 LKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKK 297
L SQG E + K+K+++K +K+ +K
Sbjct: 135 LGPFASLPSSQGAETNETKSKRQEKLEKRGEK 166
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 28.6 bits (65), Expect = 4.8
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
E+ ++ + K+ ++K+KK +K I
Sbjct: 514 EEIAYIKEQMEGSAPKEPEEKEKKPEKPEIT 544
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 28.4 bits (64), Expect = 4.8
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++ K+ + KKKK+KK+ K + ++++ +K
Sbjct: 37 EKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKK 73
Score = 28.1 bits (63), Expect = 6.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
Q E + KKKK+KK+ K KK +E +KK E
Sbjct: 38 KQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIE 76
>gnl|CDD|221161 pfam11661, DUF2986, Protein of unknown function (DUF2986). This
family of proteins has no known function.
Length = 44
Score = 25.7 bits (57), Expect = 4.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
+KKK N+K KKK KK K K + I K E
Sbjct: 3 RKKKINQKLKKKAKKANAKLHPSNKPKYISKAE 35
Score = 25.3 bits (56), Expect = 6.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 285 NKKKKKKKKKKKKKKKKKKKKETIKK 310
N+KKK +K KKK KK K K
Sbjct: 2 NRKKKINQKLKKKAKKANAKLHPSNK 27
>gnl|CDD|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020). This
family of fungal proteins is conserved towards the
C-terminus of HMG domains. The function is not known.
Length = 49
Score = 26.0 bits (57), Expect = 4.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
R + E ++NK + + KKK KKK K+++ +K
Sbjct: 3 ERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKD 42
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 28.9 bits (65), Expect = 4.9
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKK 305
KK+KK +K+K++ K + KK+K+K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRK 652
Score = 27.7 bits (62), Expect = 8.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
G +K+KKK K+K++ K + KK+K+K
Sbjct: 624 DGIKKRKKKRKRKRRFLTKIEGVKKEKRK 652
Score = 27.7 bits (62), Expect = 9.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
KKK+K K++ K + KK+K+K KK
Sbjct: 628 KRKKKRKRKRRFLTKIEGVKKEKRKDKK 655
Score = 27.7 bits (62), Expect = 9.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETI 308
+ +K+K+K + K + KK+K+K KK K I
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVI 660
Score = 27.7 bits (62), Expect = 9.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
S+ ++ K +K K KKKKKK+K + I +++ +++
Sbjct: 518 SKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLD 560
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 28.6 bits (64), Expect = 5.0
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 252 TEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
T F V + K D Q EKKK+++K K++K++ + +K+ K+ E +K+K
Sbjct: 332 TRFSSPNVQENDVEEKND--NSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 28.9 bits (65), Expect = 5.0
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 266 LKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
L + P G E +K K+K ++K K K K++ + +K + +
Sbjct: 911 LALNGGKLPENGTELVEKLAKEKSLREKNKDDWKAKEEVEAKLKAFFRRFIQ 962
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 28.8 bits (64), Expect = 5.1
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
GN K+ KKKK KK K +K+ K+K KK
Sbjct: 64 GNVSGKRVPKKKKIKKPKLRKRTKRKNKK 92
>gnl|CDD|221550 pfam12366, Casc1, Cancer susceptibility candidate 1. This domain
family is found in eukaryotes, and is typically between
216 and 263 amino acids in length. Casc1 has many SNPs
associated with cancer susceptibility.
Length = 227
Score = 28.1 bits (63), Expect = 5.1
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K ++ + + K+ K K K K K+
Sbjct: 70 KIAEEAEGARGYVTDIPKEYKAKPVKYLEIPKPIKDPP 107
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 28.6 bits (64), Expect = 5.2
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKK 301
+S+ + + +E+ K++ +KK+K KKK +K+K
Sbjct: 327 SLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
Score = 28.2 bits (63), Expect = 5.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 261 DLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
L+ L Y +E ++ ++ +KK+K KKK +K+K
Sbjct: 327 SLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT
domain-containing protein which is composed almost
entirely of four ACT domain repeats (the "ACR" protein).
This CD includes the C-terminal ACT domain, of a novel
type of ACT domain-containing protein which is composed
almost entirely of four ACT domain repeats (the "ACR"
protein). ACR proteins, found only in Arabidopsis and
Oryza, as yet, are proposed to function as novel
regulatory or sensor proteins in plants. Nine ACR gene
products have been described (ACR1-8 in Arabidopsis and
OsARC1-9 in Oryza) and are represented in this CD.
Members of this CD belong to the superfamily of ACT
regulatory domains.
Length = 72
Score = 26.5 bits (59), Expect = 5.3
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 20/79 (25%)
Query: 176 GARYE--TPDNLG----ITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYAT------VD 223
G R E T D +G +T V R GL+ T I A Y T VD
Sbjct: 1 GVRLELRTEDRVGLLSDVTRVFREN-GLTV---TRAEISTQGDMAVNVFYVTDANGNPVD 56
Query: 224 REGIVYTIEAVRKEIGHVH 242
+ TIEAVR+EIG
Sbjct: 57 PK----TIEAVRQEIGPAC 71
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 28.1 bits (63), Expect = 5.4
Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 232 EAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKK 291
+ K H+++ KT+ D ++ YD + + + +
Sbjct: 88 NSNGKRFTPAHEYIL-WFSKTKKYYTFNYDA-IKVPYDEKDKLKKRGDSEPNGKPIGDVW 145
Query: 292 KKKKKKKKKKKKKKETIKKKEE 313
+ + +K+ +K E
Sbjct: 146 DFPRVQPSEKESGGHPTQKPEA 167
Score = 27.7 bits (62), Expect = 6.6
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K KK K +K K KK + K +
Sbjct: 106 KTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIG 142
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 28.6 bits (64), Expect = 5.6
Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE-TIKKKEEKE 315
NE K KK K +K KK E T KE E
Sbjct: 672 KLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLE 713
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 28.5 bits (63), Expect = 5.9
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 253 EFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
+ R WE R RL + K + KNK + + + KKK KE +KK
Sbjct: 244 KIRKWE------REAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKAL 297
Query: 313 EKE 315
+ E
Sbjct: 298 KME 300
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel repeat
in Pneumocystis carinii Major surface glycoprotein (MSG)
some members of the alignment have up to nine repeats of
this family, the repeats containing several conserved
cysteines. The MSG of P. carinii is an important protein
in host-pathogen interactions. Surface glycoprotein A
from Pneumocystis carinii is a main target for the host
immune system, this protein is implicated in the
attachment of Pneumocystis carinii to the host alveolar
epithelial cells, alveolar macrophages, host surfactant
and possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 26.6 bits (59), Expect = 5.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K K K ++ K+ K + KKKK+ K +EK
Sbjct: 38 YKLKKDLKLEELLLKELKGELKKKKKCKKALKEK 71
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 28.1 bits (63), Expect = 6.0
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 278 NEKKKKKNKKKKKKKKK---KKKKKKKKKKKETIKKK 311
+EK KKK K+K+K +K +K + KK KK + I+++
Sbjct: 70 DEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRR 106
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 27.0 bits (60), Expect = 6.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
SQ ++KK+KK++ + KK KK+++
Sbjct: 75 SQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 26.6 bits (59), Expect = 9.6
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
+ ++KK ++ + KK KK+++
Sbjct: 76 QTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 27.6 bits (61), Expect = 6.1
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K++K++ K + +K KKKK+K +KK KKKEEK
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEK 46
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 27.1 bits (60), Expect = 6.1
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
P+ N+++ KK KKK++KKKKKKK K
Sbjct: 95 PAWMNQRQAKKLKKKREKKKKKKKGAKNLA 124
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 27.2 bits (61), Expect = 6.2
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E+ +KK K++ +++K ++ K + K KEE +
Sbjct: 84 REEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPDA 122
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 278 NEKKKKK----NKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E++ K N+ ++K ++++ +KK+ K++ E K E+ +
Sbjct: 65 KEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPL 107
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 28.1 bits (63), Expect = 6.3
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + D L + + N+ K+ K K K+ + + K+ K+ I +KE +
Sbjct: 46 QFELDSLRK--EFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEV 94
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 28.2 bits (63), Expect = 6.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+N K++ KK + K K+ + I K+E E
Sbjct: 528 GTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTE 565
Score = 27.8 bits (62), Expect = 9.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E++ K+ K++ KK + K K+ + K+ KE
Sbjct: 525 EEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKE 561
>gnl|CDD|214787 smart00721, BAR, BAR domain.
Length = 239
Score = 27.7 bits (62), Expect = 6.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 278 NEKKKKKNKKK-----KKKKKKKKKKKKKKKKKETIKKKEEK 314
+ +KK +K + K KK KK K+KKK E + K EE+
Sbjct: 137 KKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEE 178
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 26.6 bits (59), Expect = 6.6
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
KK+ + K K K+ K KK + + EK
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEK 53
>gnl|CDD|240407 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional.
Length = 569
Score = 28.4 bits (63), Expect = 6.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 266 LKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
+ Y R +P + KK +N KK K +KK+ +++K+
Sbjct: 531 VDYFRHNKPPKRKGIKKAQNAKKDLKVVQKKRHGRRRKQ 569
>gnl|CDD|188606 TIGR04091, LTA_dltB, D-alanyl-lipoteichoic acid biosynthesis
protein DltB. Members of this protein family are DltB,
part of a four-gene operon for D-alanyl-lipoteichoic
acid biosynthesis that is present in the vast majority
of low-GC Gram-positive organisms. This protein may be
involved in transport of D-alanine across the plasma
membrane [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 380
Score = 28.3 bits (64), Expect = 6.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 279 EKKKKKNKKKKKKK 292
++K KK KK KK K
Sbjct: 342 QRKSKKYKKNKKNK 355
Score = 27.9 bits (63), Expect = 7.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 277 GNEKKKKKNKKKKKKKKKK 295
+ ++K+KK KK KK K
Sbjct: 337 LTDAWQRKSKKYKKNKKNK 355
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 28.4 bits (64), Expect = 6.7
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 251 KTEFRPWEVSDLTPRLKYDRLTRPSQGNEKK-KKKNKKKKKKKKKKKKKKKKKKKKETI 308
KT F +++S+ +K ++ R +K+ K + ++K KK++KK+K K+++KE I
Sbjct: 625 KTLFFSFDISE---LMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKERI 680
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 28.4 bits (63), Expect = 6.8
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + +L R +E+K K+++K+ KK +K+ KK+K++ ++ + KE +
Sbjct: 300 KSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEI 350
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 28.0 bits (63), Expect = 6.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKK 305
+ K K+K+ K+KKK+KK+KK
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKKT 396
Score = 27.6 bits (62), Expect = 9.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETI 308
+ NK K+K+ K+KKK+KK+KK I
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKKTWARI 400
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 27.9 bits (62), Expect = 6.9
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 14/95 (14%)
Query: 230 TIEAVRKEIGHV--------------HKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPS 275
TI+ V +EIG V S K + + + K + +
Sbjct: 179 TIDEVTREIGRVLAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSA 238
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+ K K KK KK KK KK K K+ KK
Sbjct: 239 KKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKK 273
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 27.6 bits (62), Expect = 7.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
K + S+G K KKK +++ + +++K+KKK K
Sbjct: 2 KKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 27.8 bits (62), Expect = 7.0
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK-----EEKEVNG 318
+ + KKK++ + KKKK+ ++ K ++KK +EK+++
Sbjct: 76 DEKELSASSLEAEQAKKKEEAEAKKKKEMEELKA--VQKKIDQYIKEKQLSS 125
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 28.4 bits (63), Expect = 7.2
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 17/56 (30%)
Query: 277 GNEKKKKKNKKKKK---------KKKKKKK--------KKKKKKKKETIKKKEEKE 315
G K KK+KK KK KK+KKK KK +KK + + EE E
Sbjct: 606 GRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIE 661
>gnl|CDD|221569 pfam12420, DUF3671, Protein of unknown function. This domain
family is found in eukaryotes, and is typically between
96 and 116 amino acids in length.
Length = 106
Score = 26.9 bits (60), Expect = 7.2
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 279 EKK-----KKKNKKKKKKKKKKKKKKKKKKKKETIK 309
EKK +K KK KKK KK KK +
Sbjct: 13 EKKIFDKIDYIDKLKKDPNIDKKKFKKIIFKKYGLI 48
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor involved
in ribosome biogenesis.
Length = 112
Score = 26.7 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
L KKK+ KKK K+ +K++K++KK
Sbjct: 38 LAASKNEGVSKKKQRKKKPKRLTRKQRKRQKKG 70
>gnl|CDD|237043 PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 391
Score = 27.9 bits (63), Expect = 7.2
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 23/107 (21%)
Query: 163 TSPIARISVAFKAGARYETPDNLG-ITHVLRSAA--GLSTEEFTHFGI--IRHVQQAGGS 217
T+ IARI+ A P L +V R+ + EF G+ I
Sbjct: 81 TAQIARIAATRLANRPG--PLRLCYAGNVFRAQERGLGRSREFLQSGVELIGD-----AG 133
Query: 218 LYATVDREGIVYTIEAVRK--------EIGHVHKFLASVVGKTEFRP 256
L A D E I+ +EA++ ++GHV +++
Sbjct: 134 LEA--DAEVILLLLEALKALGLPNFTLDLGHV-GLFRALLEAAGLSE 177
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 28.0 bits (62), Expect = 7.3
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 291 KKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KK+ +K K+ ++E ++++++ E +
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDD 60
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 28.2 bits (63), Expect = 7.4
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKK 296
R T+ + K+ +K+KK+ K+
Sbjct: 426 RRTKRPEPRAAADTKSAAEKQKKRAKE 452
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 27.6 bits (62), Expect = 7.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
KKKK KK+++ KK KKK + + K E ++ N
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKN 153
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 27.9 bits (62), Expect = 7.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K++ KK+ +++ K K + KKK KKK E E
Sbjct: 143 KAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAE 178
Score = 27.5 bits (61), Expect = 8.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+ + K K + + +KK K++ KK+ E K +
Sbjct: 126 AKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAA 162
>gnl|CDD|240235 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional.
Length = 211
Score = 27.5 bits (61), Expect = 8.0
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
P Q K K K+ K K K +K K + EEK
Sbjct: 42 PEQVPTGKNKLLLTKRSKLKGIPKPRKLHKHGFWAEIFEEKV 83
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 26.8 bits (60), Expect = 8.1
Identities = 11/34 (32%), Positives = 26/34 (76%), Gaps = 2/34 (5%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ N+++KK +K +++KKK++K+E ++E+K
Sbjct: 83 QEANQERKKLEKLLEREKKKEQKEE--NRREQKL 114
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 27.7 bits (62), Expect = 8.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+ KKK + KKK K KK +
Sbjct: 147 ERTEILAEKKKPRSKKKSSKNSKKLRID 174
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 27.6 bits (61), Expect = 8.2
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKK 302
EK+KKKN K++K+ KKK++ K++
Sbjct: 96 EKEKKKNLNKEEKEAKKKERAKRE 119
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 28.0 bits (62), Expect = 8.3
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 250 GKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
G + ++ DL + D G + ++K+KKKKKK K KKK KK
Sbjct: 206 GGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKG 261
Score = 27.6 bits (61), Expect = 9.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E +++KN+++ KK KK KK K KK + K +
Sbjct: 322 ESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDS 358
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 27.8 bits (62), Expect = 8.3
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 275 SQGNEKKKKKNKKKKKKKKK------KKKKKKKKK 303
QGN +K K KK+KKKK+ K+KKK+K
Sbjct: 6 GQGNNQKDKNKKKEKKKKESPPPPHEIKRKKKRKG 40
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 27.4 bits (61), Expect = 8.3
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
D + + +K+ ++ +K+K + K++K K+ +
Sbjct: 88 DAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQ 131
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 27.6 bits (62), Expect = 8.3
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 224 REGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKY--DRLTRPSQG---N 278
++GI IE + + + +GK ++DL +L R G N
Sbjct: 11 KKGIA-AIELASDLLKALEELKVKYLGKKG----VLTDLLKKLGKLSPLEERKEVGALIN 65
Query: 279 EKKKK-KNKKKKKKKKKKKKKKKKKKKKETI 308
E KK+ ++ + + + ++ E I
Sbjct: 66 ELKKEVEDAITELTPELEAAGLWERLAFEKI 96
>gnl|CDD|129155 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, YggS family.
Members of this protein family include YggS from
Escherichia coli and YBL036C, an uncharacterized
pyridoxal protein of Saccharomyces cerevisiae [Unknown
function, Enzymes of unknown specificity].
Length = 229
Score = 27.5 bits (61), Expect = 8.5
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 149 GTSYNKVKVVSVNETSPIARISVAFKAGAR 178
+ +KVK+++V++T P + I +A+ AG R
Sbjct: 23 NRNPSKVKLLAVSKTKPASAIQIAYDAGQR 52
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 27.8 bits (61), Expect = 8.9
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
K DR R Q N K+++ K K K KK+ KK K
Sbjct: 436 KLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHA 481
>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated 2).
NSA2 appears to be a protein required for the
maturation of 27S pre-rRNA in yeast; it has been
characterized in mammalian cells as a nucleolar protein
that might play a role in the regulation of the cell
cycle and in cell proliferation.
Length = 257
Score = 27.6 bits (62), Expect = 9.0
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKK-----KKKKKKKKKKKKKKKKKETIKKKEEKEV 316
RL ++ R + E K+ K + K K KK+ K+K + K+TIK EE+ V
Sbjct: 14 RLDHEERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERNV 70
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 26.6 bits (59), Expect = 9.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
KK +KK K K KKKK + K ++K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 27.8 bits (61), Expect = 9.0
Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 277 GNEKKKK--------KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E ++K K + K +++K++ + ++ K++E KK++E+E
Sbjct: 1008 PPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKERE 1054
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 27.7 bits (61), Expect = 9.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E+K K+ K K K +K +K +K+K+ I K E+ E
Sbjct: 389 ERKAKRVAKIKSKTYRKIRKNRKEKEMALIPKSEDLE 425
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 27.0 bits (60), Expect = 9.8
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKK---------KKKETIKKKEEKEVN 317
EK+ K N KK K K KK KK + E + +K+ E
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAA 156
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 27.4 bits (61), Expect = 9.8
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
RP EK +K + K+ +KKK
Sbjct: 258 RPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.126 0.340
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,988,307
Number of extensions: 1586870
Number of successful extensions: 17183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11248
Number of HSP's successfully gapped: 1809
Length of query: 318
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 221
Effective length of database: 6,635,264
Effective search space: 1466393344
Effective search space used: 1466393344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (26.4 bits)