RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15801
(318 letters)
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B*
1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B*
2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B*
3bcc_B* ...
Length = 439
Score = 103 bits (258), Expect = 6e-25
Identities = 52/147 (35%), Positives = 82/147 (55%)
Query: 123 SSDVSAKRSFAAQPATKALFSPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETP 182
S V+ K PA D++ N + + S+ +P +RI + KAG+RYE
Sbjct: 1 SLKVAPKVKATEAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENS 60
Query: 183 DNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVH 242
+NLG +H+LR A+ L+T+ + F I R ++ GG L T RE + YT+E +R ++ +
Sbjct: 61 NNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILM 120
Query: 243 KFLASVVGKTEFRPWEVSDLTPRLKYD 269
+FL +V EFR WEV+ L P+L+ D
Sbjct: 121 EFLLNVTTAPEFRRWEVAALQPQLRID 147
Score = 58.8 bits (143), Expect = 6e-10
Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 33/165 (20%)
Query: 1 ASAKEALAFAVLKYALGAGPA-KTGKN------QRSTNSKGLSRTPGRESLDESHHF--- 50
+ EA AF+VL++ LGAGP K G N Q + +
Sbjct: 264 IGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQP-----FDVSAFNASYSD 318
Query: 51 ---------SPPQALQASIDVVRGA-------GIKDADIARGKALLKRHLADSFETLDST 94
S + I + + D+ K LK S E+ +
Sbjct: 319 SGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGF 378
Query: 95 VDSVVRQAVTTGVVKSLPDLLAEVEAVSSSDVS--AKRSFAAQPA 137
+D V QA+ G +L +++AV+ +DV AK+ + + +
Sbjct: 379 LDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKS 423
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 90.5 bits (225), Expect = 8e-21
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 155 VKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQA 214
+ V + + + I+ ++V G+RY T D G+ H+L +T + ++R +
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELL 58
Query: 215 GGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD 261
GG+ +T+DRE I ++ ++ + LA V+ KT F+P E+++
Sbjct: 59 GGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTE 105
Score = 33.1 bits (76), Expect = 0.094
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 51 SPPQALQASIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQA-------- 102
+ ++I + K D++ K A E++ S ++
Sbjct: 276 QDSAVVSSNIKKIVADLKKGKDLSPAINYTKLKNAVQNESVSSPIELNFDAVKDFKLGKF 335
Query: 103 --VTTGVVKSLP 112
V G V +LP
Sbjct: 336 NYVAVGDVSNLP 347
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 65.8 bits (161), Expect = 3e-12
Identities = 25/117 (21%), Positives = 53/117 (45%)
Query: 143 SPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEF 202
+ + + + N +KV + N + + + AG+R+E + G TH+L A STE
Sbjct: 3 TDNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV 62
Query: 203 THFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEV 259
+ ++ GG+ T RE ++Y +++G + + ++ V + E+
Sbjct: 63 EGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQEL 119
Score = 46.9 bits (112), Expect = 4e-06
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 64 RGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVSS 123
+ + + +++R K LK L + E+ ++ + RQ + G + ++++++E +
Sbjct: 345 KDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKP 404
Query: 124 SDVS--AKRSFAAQPATKAL 141
D+S A+ F
Sbjct: 405 DDISRVAEMIFTGNVNNAGN 424
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A*
1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A*
2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
2bcc_A* ...
Length = 446
Score = 61.4 bits (150), Expect = 9e-11
Identities = 30/123 (24%), Positives = 51/123 (41%)
Query: 137 ATKALFSPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAG 196
A P+ Q N ++V S + P + V AG+RYE+ N G + + A
Sbjct: 5 AQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAF 64
Query: 197 LSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRP 256
T+ + + V+ G L A RE Y I+A+ K++ + LA +V
Sbjct: 65 KGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLED 124
Query: 257 WEV 259
++
Sbjct: 125 SQI 127
Score = 48.3 bits (116), Expect = 1e-06
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 53 PQALQASIDVVRG------AGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTG 106
++ + V++G ++++ RGK LL+ L + + + R +T G
Sbjct: 328 HMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYG 387
Query: 107 VVKSLPDLLAEVEAVSSSDVS--AKRSFAAQPATKALFSP--------DIQSGTSYN 153
L + + + V + V + F Q A F P I+SG +
Sbjct: 388 RRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWL 444
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 54.5 bits (132), Expect = 1e-08
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 144 PDIQSGTSYNKVKVVSVNETSPIAR---ISVAFKAGARYETPDNLGITHVLRSAAGLSTE 200
P ++ N + + + E P + + AG+R E N G H L A T+
Sbjct: 5 PGTRTSKLPNGLTIAT--EYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQ 62
Query: 201 EFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEV 259
GI ++ G L A RE VY ++++++I L+ ++ K+ +
Sbjct: 63 NRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAI 121
Score = 48.0 bits (115), Expect = 2e-06
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 39 PGRESLDESHHFSPPQALQASIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSV 98
++ + + ++ I DA++ R KA LK L S + + V+ +
Sbjct: 325 SNEHNVRLIVNE-----ILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDI 379
Query: 99 VRQAVTTGVVKSLPDLLAEVEAVSSSDVS--AKRSFAAQPATKALFSPDIQSGTSYNKVK 156
RQ VTTG S ++ +V+ ++ D+ A +P + + + + ++
Sbjct: 380 GRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGN-TSTVPNVSYIE 438
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 2e-08
Identities = 60/325 (18%), Positives = 106/325 (32%), Gaps = 112/325 (34%)
Query: 6 ALA-FAVLKYALGAGPAKTGKNQR--STNSKGL------SRTPGRESLDE---------- 46
LA + V LG P + + + +S+GL + T ES
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 47 -----SHHFSP-----PQALQASIDVVRGA-----GIKDADIARGKALLKRHLADSFETL 91
+ P P L+ S++ G I + + ++ ++ + L
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT----QEQVQDYVNKTNSHL 360
Query: 92 --DSTVD-SVV---RQAVTTGVVKSLPDL---LAEVEAVSSSDVSAKRSFAAQPATKALF 142
V+ S+V + V +G +SL L L + +A S D Q ++ F
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD---------Q--SRIPF 409
Query: 143 SPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEF 202
S + K+ N P ++ F +H+L A+ L ++
Sbjct: 410 S----------ERKLKFSNRFLP---VASPFH-------------SHLLVPASDLINKDL 443
Query: 203 THFGIIRHVQQAGGSLYATVD----REG-------IVYTIEAVRKEIGHVH-----KFLA 246
+ + + +Y T D R IV I +R V +F A
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI--IRL---PVKWETTTQFKA 498
Query: 247 S-VVGKTEFRPWEVS---DLTPRLK 267
+ ++ +F P S LT R K
Sbjct: 499 THIL---DFGPGGASGLGVLTHRNK 520
Score = 48.1 bits (114), Expect = 3e-06
Identities = 59/315 (18%), Positives = 104/315 (33%), Gaps = 107/315 (33%)
Query: 41 RESLDES-HHFSPPQALQASI-DVVRGAGIKDA---DIARGKALLKRHLADSFETLDSTV 95
++ + + +HF SI D+V + +GK + + + A FET V
Sbjct: 1643 QDVWNRADNHFK--DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET---IV 1697
Query: 96 DSVVRQAVTTGVVKSLPDLLAEVEAVSSS-------DVSAKRSFAAQPA----TKALFSP 144
D G +K+ + E+ S+S + + F QPA KA F
Sbjct: 1698 D---------GKLKTEK-IFKEINEHSTSYTFRSEKGLLSATQFT-QPALTLMEKAAFE- 1745
Query: 145 DIQSGTSYNKVKVV---SVNETSPIARISVA----FKAGARYETPDNL----GITH---V 190
D++S S+ E + A S+A ++ + G+T V
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYA--ALASLADVMSIESLVE------VVFYRGMTMQVAV 1797
Query: 191 LRSAAGLSTEEFTHFGIIRHVQQA--GGSLYATVDREGIVYTIEAVRKEIGHVHKFLASV 248
R G S ++G+I A G + A+ +E + Y +E V K G +L +
Sbjct: 1798 PRDELGRS-----NYGMI-----AINPGRVAASFSQEALQYVVERVGKRTG----WLVEI 1843
Query: 249 V------------GKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKK 296
V G + +T L + K +K
Sbjct: 1844 VNYNVENQQYVAAGDLR----ALDTVTNVLNF--------------------IKLQKIDI 1879
Query: 297 KKKKKKKKKETIKKK 311
+ +K E ++
Sbjct: 1880 IELQKSLSLEEVEGH 1894
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 53.8 bits (130), Expect = 3e-08
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 143 SPDIQSGTSYNKVKVVSV-NETSPIARISVAFKAGARYETPDNLGITH----VLRSAAGL 197
+ I+ T+ + +V V N T P+ + V F AG+ E D +G+ ++ + G
Sbjct: 1 AIKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGS 60
Query: 198 STEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKE 237
I + G L + + +++ +
Sbjct: 61 GKSALDENAIADRLADIGARLGGGAEADRASFSLRVLSSP 100
Score = 35.7 bits (83), Expect = 0.015
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 8/92 (8%)
Query: 54 QALQASIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPD 113
Q ++D G DA++ K L A ++ + V + L
Sbjct: 321 QVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDYLDH 380
Query: 114 LLAEVEAVSSSDVSAKRSFAAQPATKALFSPD 145
V+AV+ V A +
Sbjct: 381 YTERVQAVTVEQVRE--------AFARHVKRE 404
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 53.1 bits (128), Expect = 5e-08
Identities = 12/98 (12%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 137 ATKALFSPDIQSGTSYNKVKVVSV-NETSPIARISVAFKAGARYETPDNLGITHVLRSAA 195
+ + ++Q+ ++ KV+ V P+ + + F AG+ + + G+ + +
Sbjct: 5 KAPSHRNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAML 63
Query: 196 GLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEA 233
I + + G ++ V ++ +
Sbjct: 64 NEGVAGKDVGAIAQGFEGLGADFGNGAYKDMAVASLRS 101
Score = 31.9 bits (73), Expect = 0.26
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 8/92 (8%)
Query: 54 QALQASIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPD 113
+ +Q G ++ K L S + V + + L D
Sbjct: 328 KLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLED 387
Query: 114 LLAEVEAVSSSDVSAKRSFAAQPATKALFSPD 145
+ + + ++ V A A + D
Sbjct: 388 FMRQSQELTVEQVKA--------AMNKHLNVD 411
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A*
2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Length = 431
Score = 52.2 bits (126), Expect = 9e-08
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 12/113 (10%)
Query: 153 NKVKVVSVNETSPIAR---ISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIR 209
N + V + E +P A + V F +GA E P N G++++ ++
Sbjct: 8 NGIVVAT--EHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------A 58
Query: 210 HVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDL 262
+ G +L + + R+ Y + ++ FL + + S+
Sbjct: 59 VAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNF 111
Score = 47.6 bits (114), Expect = 3e-06
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 11/116 (9%)
Query: 51 SPPQALQASIDVVR------GAGIKDADIARGKALLKRHLADSFE--TLDSTVDSVVRQA 102
+ I + D ++ R K+LLK L +E + + + +
Sbjct: 309 RNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEV 368
Query: 103 VTTGVVKSLPDLLAEVEAVSSSDVS--AKRSFAAQPATKALFSPDIQSGTSYNKVK 156
+ G SL + +++A++ DV A + Q A I+ Y +++
Sbjct: 369 LIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQ-IEGLLDYMRIR 423
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 46.4 bits (111), Expect = 6e-06
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 63 VRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVEAVS 122
+ G+ + ++ GK LK L S E+ +S + + + +SL +++ ++ AV
Sbjct: 321 LAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQ 380
Query: 123 SSDVS--AKRSFAAQPATKAL 141
DVS AK +A P+ +
Sbjct: 381 KQDVSRLAKILLSASPSISLI 401
Score = 44.5 bits (106), Expect = 2e-05
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 153 NKVKVVSV-NETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHV 211
N V++++ T I + G+RYE+ + GI+H L T + I
Sbjct: 9 NGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFF 68
Query: 212 QQAGGSLYATVDREGIVY 229
GG + A +E Y
Sbjct: 69 DSIGGQVNAFTSKEYTCY 86
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 45.6 bits (109), Expect = 1e-05
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 54 QALQASIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPD 113
LQ +D + G+ + ++ R K L L + ET + + + + TG SL +
Sbjct: 312 AVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEE 371
Query: 114 LLAEVEAVSSSDVS--AKRSFAAQPATKAL 141
+ A V+ V+S +V+ +R F + +
Sbjct: 372 VKARVQRVTSREVNALLERGFLEKGLYYLV 401
Score = 37.9 bits (89), Expect = 0.004
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 25/90 (27%)
Query: 153 NKVKVVSVNETSPIAR---ISVAFKAGARYETPDNLGITHVL----------RSAAGLST 199
N ++V++ E P AR + K GAR ET + G++H L A
Sbjct: 9 NGLRVIA--EVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDA----- 61
Query: 200 EEFTHFGIIRHVQQAGGSLYATVDREGIVY 229
+ R + G A E VY
Sbjct: 62 -----LAVNRAFDRMGAQYNAFTSEEATVY 86
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A
{Sphingomonas} PDB: 3amj_C
Length = 445
Score = 40.4 bits (95), Expect = 5e-04
Identities = 15/65 (23%), Positives = 24/65 (36%)
Query: 157 VVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGG 216
VV + +P V ++ G+ ET G+ H L T++ + V GG
Sbjct: 19 VVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGG 78
Query: 217 SLYAT 221
A
Sbjct: 79 RDNAF 83
Score = 38.5 bits (90), Expect = 0.002
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 54 QALQASIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPD 113
L+A + + G+ +A+++R K+ + ++L + V +
Sbjct: 329 TDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDR 388
Query: 114 LLAEVEAVSSSDVS--AKRSFAAQPATKALFSP 144
++ +V++++V A R T A P
Sbjct: 389 FYQQLRSVTAAEVKAAAARLLTDDTLTVANLVP 421
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus
faecalis V583, STR genomics, PSI-2, protein structure
initiative; 1.95A {Enterococcus faecalis}
Length = 425
Score = 39.2 bits (92), Expect = 0.001
Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 60 IDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPDLLAEVE 119
++ +R I++ +I + KA+LK + + + ++ + + + + +A +
Sbjct: 337 LENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARIN 396
Query: 120 AVSSSDVS--AKRSF 132
AV+ ++ AKR
Sbjct: 397 AVTIPEIQEVAKRLE 411
Score = 37.7 bits (88), Expect = 0.004
Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 145 DIQSGTSYNKVKVVSV-NETSPIARISVAFKAGARYETPDNLG-ITHVLRSAAG--LSTE 200
+ S V + + E R+ V F +ET ++ ++ + + +
Sbjct: 2 NAMSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQV 61
Query: 201 EFTHFGIIRHVQQA-GGSLYATVDREGIVYTI 231
+ + + + G S V ++G +
Sbjct: 62 KLS-----ERLAELYGASFGIGVSKKGNQHWF 88
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.2 bits (88), Expect = 0.001
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 255 RPWEVSDLTPRLKYD-RLTRPSQGNEKKKKKNKKKKKKKK----KKKKKKKKKKKKETIK 309
R W R + RL ++ +++ ++K KK +++ ++ +K K
Sbjct: 88 RKW-------REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN-- 138
Query: 310 KKEEKE 315
+ +K
Sbjct: 139 RIADKA 144
Score = 36.7 bits (84), Expect = 0.004
Identities = 5/48 (10%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 271 LTRPSQGNEKKKKKNK-KKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ + + ++ + K +++++K+ ++ K ++ ++K +K++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
Score = 31.7 bits (71), Expect = 0.18
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ DRLT+ + K +++ +K+ ++ K +++ +++ K EE
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 37.5 bits (87), Expect = 0.005
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 9/107 (8%)
Query: 133 AAQPATKALFSPDIQSGTSYNKVKV-VSVNETSPIARIS--VAFKAGARYETPDNLGITH 189
A P Q G N + P RI + G+ E +G H
Sbjct: 13 NNVQAEALQPDPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAH 72
Query: 190 VL-----RSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTI 231
+L S+A + + + + A + +Y++
Sbjct: 73 LLPRLALMSSASFTPAQLQSL-WQQGIDNERPLPPAITSYDFTLYSL 118
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 36.7 bits (84), Expect = 0.005
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
R P ++KK K+ K KK K ++KKKK+ K +++
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQ 104
Score = 36.7 bits (84), Expect = 0.007
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 263 TPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ + + ++K + K+ K KK K ++KKKK+ K K K
Sbjct: 51 ALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQ 104
Score = 35.6 bits (81), Expect = 0.013
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ Q ++ K K K ++KKKK+ K K K++ + K E
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLE 111
Score = 34.8 bits (79), Expect = 0.028
Identities = 15/71 (21%), Positives = 28/71 (39%)
Query: 245 LASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
L + V R + + K KK K ++KKKK+ K K K++
Sbjct: 45 LTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQ 104
Query: 305 KETIKKKEEKE 315
+ +K + ++
Sbjct: 105 RMALKLEADRL 115
Score = 34.0 bits (77), Expect = 0.040
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++ LT + + + ++ + + ++KK+ K+ K KK K +E KK+ K
Sbjct: 41 QIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 33.6 bits (76), Expect = 0.063
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+KK+ + K KK K ++KKKK+ K K++ +
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 31.3 bits (70), Expect = 0.31
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 264 PRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
PR K +P + + K ++ KKK+ K K K+++ K E + + K +G
Sbjct: 69 PRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDG 123
Score = 31.3 bits (70), Expect = 0.34
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
Q + + + ++KK+ K+ K KK + +KK+++
Sbjct: 56 QATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 27.5 bits (60), Expect = 5.7
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
++KKKK K K K+++ K + + K E+ +V G
Sbjct: 81 KPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDVIG 127
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 33.5 bits (76), Expect = 0.028
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KNK K K +++ K + K+E + K+E +E
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKEEGQE 34
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 34.7 bits (80), Expect = 0.032
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
N+K+++ +K ++ K K+K +K++ +K+
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.6 bits (77), Expect = 0.069
Identities = 11/37 (29%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K+N+K+++ ++K ++ K K+K E K++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAE--KERLEKQ 340
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 34.9 bits (80), Expect = 0.033
Identities = 7/40 (17%), Positives = 26/40 (65%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
NE +KK ++++++ + + + K++++++ ++K +E
Sbjct: 395 NENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEE 434
Score = 33.3 bits (76), Expect = 0.10
Identities = 7/40 (17%), Positives = 25/40 (62%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ K++N+ +KKK++++++ + + + + +++E K
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKA 428
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 34.8 bits (79), Expect = 0.033
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 260 SDLTPRLKYDRLTRPSQGNEKKKKK-------NKKKKKKKKKKKKKKKKKKKKETIKKKE 312
DL+ LK KK K K+ K K K KK K T +K
Sbjct: 247 DDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKA 306
Query: 313 EKEVN 317
+V+
Sbjct: 307 LAKVD 311
Score = 34.0 bits (77), Expect = 0.050
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 240 HVHKFLASVVGKTEFRPWEVSDLTPRLKY-DRLTRPSQGNEKKKKKNKKKKKKKKKKKKK 298
+ L+ + E + + +LK D + K K+ K KK K
Sbjct: 244 ELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAA 303
Query: 299 KKKKKKKETIKKK 311
+K K + K
Sbjct: 304 QKALAKVDKSGMK 316
Score = 33.6 bits (76), Expect = 0.067
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 5/85 (5%)
Query: 232 EAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKK 291
+ + K + + ++ + + Y + KK K +K
Sbjct: 247 DDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKA 306
Query: 292 KKKKKKKKKKK-----KKKETIKKK 311
K K K K K
Sbjct: 307 LAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 32.5 bits (73), Expect = 0.15
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET--IKKKEEKE 315
+ T+ + + K KKN K +K K K K K +K
Sbjct: 281 EDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKT 329
Score = 31.7 bits (71), Expect = 0.24
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E K+ K K K KK K ++ + K ++
Sbjct: 278 EAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP:
d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 34.8 bits (79), Expect = 0.042
Identities = 12/82 (14%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 153 NKVKVVSV-NETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFG-IIRH 210
N + V+ V + + + ++ G+ + G+ H L + + ++++ + +
Sbjct: 28 NGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEY 87
Query: 211 VQQAGGSLYATVDREGIVYTIE 232
++ GGS A+ + +E
Sbjct: 88 LKMHGGSHNASTAPYRTAFYLE 109
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 34.5 bits (80), Expect = 0.043
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
Y P + K +KKK + K+K+K + KKE
Sbjct: 10 YQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEM 49
Score = 28.4 bits (64), Expect = 3.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ K KKK + K+K+K KKE +
Sbjct: 15 GPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEME 50
Score = 28.0 bits (63), Expect = 5.3
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K KKK + K+K++ K+E E+N
Sbjct: 16 PGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIN 52
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 34.1 bits (78), Expect = 0.056
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
+++ + KKKKKKKKK+ K +T
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 33.0 bits (75), Expect = 0.12
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+ E+ + KKKKKKKKK K
Sbjct: 76 LEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 33.0 bits (75), Expect = 0.14
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
V ++ +L+ L + + + KKKKKKKKK+ K
Sbjct: 63 SVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 32.2 bits (73), Expect = 0.21
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ + KKKKKKKKK+ K + +
Sbjct: 85 DEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 31.8 bits (72), Expect = 0.27
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+L R + ++++ + ++ KKKKKKKK+ K
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.8 bits (72), Expect = 0.28
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
S +K++ ++ + KKKKKKK+ K + +
Sbjct: 73 RSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 29.9 bits (67), Expect = 1.2
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ + KKK+ KKKK K +++ K+ + +++
Sbjct: 24 EEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLE 72
Score = 28.7 bits (64), Expect = 2.7
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
D + R + + + K+ + + KKKK+ KK+ K
Sbjct: 65 DEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 28.3 bits (63), Expect = 3.8
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ KKK++KKKK K ++ K+ V+
Sbjct: 26 GAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDE 66
Score = 28.0 bits (62), Expect = 5.2
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
L +++++ ++ KKK++KKKK K ++E + +G
Sbjct: 12 SHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESG 61
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 33.9 bits (77), Expect = 0.058
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
Y + + N +KK KK+ KKK+ + K +KK+ + +K+
Sbjct: 240 YKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKAS 286
Score = 33.1 bits (75), Expect = 0.10
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 279 EKKKKKNKKKKKKKKKK----KKKKKKKKKKETIKKKEEKE 315
EKK KK KKK+ + K +KK + +KK + + +E+
Sbjct: 254 EKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERA 294
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 34.0 bits (77), Expect = 0.061
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ + K K++ K +K K KK + K E+ +
Sbjct: 339 IVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAI 388
Score = 29.8 bits (66), Expect = 1.2
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ + + K K++ K +K K KK + K
Sbjct: 336 AAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKA 383
Score = 29.8 bits (66), Expect = 1.3
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K +K K KK + K +E I K +++
Sbjct: 360 KANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDA 396
Score = 28.2 bits (62), Expect = 3.6
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +K K KK + K ++ K ++E
Sbjct: 360 KANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDA 396
Score = 27.5 bits (60), Expect = 6.0
Identities = 4/48 (8%), Positives = 14/48 (29%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ + +++ +K K KK + ++ +
Sbjct: 345 KKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKAR 392
Score = 27.5 bits (60), Expect = 6.4
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 264 PRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
P + L + + + K++ KK + K K++ K +K K+ +
Sbjct: 323 PLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQ 374
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 33.6 bits (76), Expect = 0.064
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 280 KKKKKN--KKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
KK ++ +K K +++K + K++K K +K
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAA 50
Score = 30.9 bits (69), Expect = 0.38
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+K K ++K + K++K + K + +
Sbjct: 20 RKAKAEQRKASSAQMKQRKAEWISKAQKYAAE 51
Score = 30.9 bits (69), Expect = 0.40
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+EK +K +++K + K++K + + K E
Sbjct: 16 DEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAE 51
Score = 30.9 bits (69), Expect = 0.44
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
E +KK + +K +K K +++K + +K E
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAE 40
Score = 30.1 bits (67), Expect = 0.84
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+++K + + K++K + K +K E +++
Sbjct: 25 EQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKI 59
Score = 29.7 bits (66), Expect = 0.99
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K + +K + K++K + K ++ + E E
Sbjct: 21 KAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAE 56
Score = 29.0 bits (64), Expect = 1.9
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+++K + K++K + K +K + E+K V
Sbjct: 24 AEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIV 60
Score = 28.6 bits (63), Expect = 2.2
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
++K +K K +++K + K++K + +K
Sbjct: 15 RDEKLRKAKAEQRKASSAQMKQRKAEWISKAQK 47
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding
protein, gene regulation; NMR {Homo sapiens} SCOP:
b.40.4.5
Length = 143
Score = 32.3 bits (73), Expect = 0.081
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
KNK K K +++ K + + +K+E + K++
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
Score = 27.7 bits (61), Expect = 3.2
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K K K K +++ K + + +K++ + KE+ +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE-----LVFKEDGQEYA 35
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 33.3 bits (75), Expect = 0.084
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K++ ++ +KK+K +K K E K +
Sbjct: 15 ILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Score = 32.5 bits (73), Expect = 0.12
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
++++ +KK+K +K K + K + E
Sbjct: 19 RREEVWAAEKKQKVAAEKIKAAENTKVIYARAE 51
Score = 31.3 bits (70), Expect = 0.32
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+KK K +K K + K + E + E +
Sbjct: 25 AAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDK 62
Score = 30.6 bits (68), Expect = 0.53
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
EKK+K +K K + K + ++ + ++KE+
Sbjct: 27 EKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKEL 64
Score = 30.6 bits (68), Expect = 0.54
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
EK K ++++ +KK+K +K K K
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAENTKV 45
Score = 29.0 bits (64), Expect = 1.9
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K+K +K K + K + ++ + ++++ V
Sbjct: 29 KQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQ 66
Score = 28.3 bits (62), Expect = 3.0
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
E+ KK+K +K K + K ++
Sbjct: 20 REEVWAAEKKQKVAAEKIKAAENTKVIYARAEQ 52
Score = 27.1 bits (59), Expect = 7.5
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+K + K + K + ++ + + KE ++
Sbjct: 30 QKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQL 67
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 32.9 bits (74), Expect = 0.10
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 280 KKKKKN--KKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
KK K ++ ++ +K K+K+ I ++
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQ 52
Score = 31.7 bits (71), Expect = 0.26
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+K ++ ++ +K K+K+ + ++E
Sbjct: 19 QQKTAEQVAAERAARKAANKEKRAIILERNAAYQKE 54
Score = 31.3 bits (70), Expect = 0.30
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++ ++ +K K+K+ ++ +K+ E
Sbjct: 23 AEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER 60
Score = 30.6 bits (68), Expect = 0.61
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
E + KK+K ++K ++ ++ +K K+
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAI 43
Score = 29.8 bits (66), Expect = 0.92
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++ K K+K+ ++ +KE +
Sbjct: 28 AERAARKAANKEKRAIILERNAAYQKEYETAERNI 62
Score = 29.8 bits (66), Expect = 1.0
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++K + ++ +K K+K+ E +++
Sbjct: 18 AQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKE 54
Score = 28.2 bits (62), Expect = 3.3
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
++ +K K+K+ ++ ++ + E +
Sbjct: 27 AAERAARKAANKEKRAIILERNAAYQKEYETAERNII 63
Score = 27.5 bits (60), Expect = 5.2
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+K NK+K+ ++ +K+ + + K
Sbjct: 31 AARKAANKEKRAIILERNAAYQKEYETAERNIIQAK 66
Score = 27.5 bits (60), Expect = 5.7
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
+ K + T E+ +K K+K+ ++ +K+ ET ++
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNI 62
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 32.9 bits (75), Expect = 0.12
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
S + K+K+ K KKK K K K+
Sbjct: 345 VTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRG 378
Score = 31.8 bits (72), Expect = 0.30
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
++T ++K+ + K KKK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 31.4 bits (71), Expect = 0.34
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 243 KFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGN-------EKKKKKNKKKKKKKKKK 295
KF+ G+ +F + RL +QG K+K+ + K
Sbjct: 307 KFM---CGEKQFSEERIRSGVKRLS-KSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGS 362
Query: 296 KKKKKKKKKKETIKKK 311
KKK K K+
Sbjct: 363 TKKKAKTGAAGKFKRG 378
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 32.8 bits (74), Expect = 0.14
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+++ K K K K K KK E+ KK ++
Sbjct: 485 ADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQR 519
Score = 32.4 bits (73), Expect = 0.20
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K K K+K KK + KKKK KK++++ K EE+
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPE 39
Score = 30.5 bits (68), Expect = 0.79
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K + K K K KK + KKK + ++++ K
Sbjct: 492 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKL 527
Score = 29.0 bits (64), Expect = 2.4
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ K KK + KKK ++ +++ K + + ++E K++
Sbjct: 502 KDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIA 541
Score = 29.0 bits (64), Expect = 2.7
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 266 LKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK--ETIKKKEEKE 315
K K K K KK + KKK ++ E + K E +
Sbjct: 480 KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQA 531
Score = 29.0 bits (64), Expect = 2.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ K K K K KK + KKK + ++ + EV
Sbjct: 492 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 529
Score = 28.2 bits (62), Expect = 3.8
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
+ + +K K++K K K++ +K K+
Sbjct: 138 QTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 28.2 bits (62), Expect = 4.7
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 263 TPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
P+ + + KK++ ++ K K K K +T K E K+
Sbjct: 462 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKK 514
Score = 27.4 bits (60), Expect = 8.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ K K KK + KKKK KK+++++ +EE+ G
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEG 40
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 31.6 bits (72), Expect = 0.14
Identities = 4/36 (11%), Positives = 19/36 (52%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ K K+++++++ + + ++ +++EE
Sbjct: 100 SPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
Score = 30.4 bits (69), Expect = 0.32
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K ++++++ + + ++EE+E
Sbjct: 101 PMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 30.7 bits (69), Expect = 0.19
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K+ K K KK KKK + K +++ +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQH 38
Score = 29.2 bits (65), Expect = 0.58
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
P + K K KK KKK KK K+
Sbjct: 2 PPKQQLSKAAKAAAALAGGKKSKKKWSKKSMKD 34
Score = 29.2 bits (65), Expect = 0.62
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K++ K KK KKK K+++K + + V
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAV 40
Score = 28.8 bits (64), Expect = 0.80
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
K++ K K KK KKK K+
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.9 bits (59), Expect = 4.5
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
K KK KKK KK K +
Sbjct: 10 AAKAAAALAGGKKSKKKWSKKSMKDR 35
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 30.9 bits (69), Expect = 0.20
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKET 307
P++ KK +KK K +KK KK+KK +KE+
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKES 37
Score = 28.6 bits (63), Expect = 1.4
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
E K KK KK K +KK KK +KE
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 28.6 bits (63), Expect = 1.5
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ K KK KK K +KK K+ K ++E
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 27.1 bits (59), Expect = 4.7
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
P K KK K +KK KK+KK
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKS 33
Score = 26.3 bits (57), Expect = 8.2
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ KK KK K +KK + +KK KE
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 31.9 bits (72), Expect = 0.23
Identities = 15/74 (20%), Positives = 28/74 (37%)
Query: 245 LASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
L + +G +P + + + +K KK +KKK K K+ + K +
Sbjct: 44 LVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103
Query: 305 KETIKKKEEKEVNG 318
+ +VNG
Sbjct: 104 DCIFPVMLDGKVNG 117
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 32.2 bits (74), Expect = 0.24
Identities = 14/46 (30%), Positives = 17/46 (36%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
R E + K+ K KK K K K T K+ K NG
Sbjct: 432 RKYIPGEPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNG 477
Score = 29.5 bits (67), Expect = 1.7
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
K KK K K K KK K K +
Sbjct: 450 KNTTSVKKAKGKNPKNTTSVKKAKGKNGSR 479
Score = 28.4 bits (64), Expect = 3.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
N +K+ K+ K K+ K +K+K K+ EKE
Sbjct: 57 NSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKE 94
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 30.4 bits (68), Expect = 0.26
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
P + K K+KKKK K K+KE
Sbjct: 3 PKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKE 35
Score = 30.0 bits (67), Expect = 0.30
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
KK K K K+KKKK + K++EK N
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN 39
Score = 29.2 bits (65), Expect = 0.66
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
KK K K K K+KKKK K+KE
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKE 35
Score = 29.2 bits (65), Expect = 0.73
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
K K K K K+KKKK K K+K
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.7 bits (61), Expect = 2.3
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
+ ++ +K K K+KKKK K K
Sbjct: 2 APKKDKAPPPSSKPAKSGGGKQKKKKWSKGK 32
Score = 27.3 bits (60), Expect = 2.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
+ K K+KKKK K K+K+K
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+ K K K+KKKK K K+K+K
Sbjct: 7 KAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 31.8 bits (72), Expect = 0.29
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
R Q + + ++ K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 30.7 bits (69), Expect = 0.61
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+ + E + + + K K+ +K
Sbjct: 1 MASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 30.7 bits (69), Expect = 0.67
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKK 300
R P + + K K+ +K
Sbjct: 6 RYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.5 bits (66), Expect = 1.4
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKK 301
R + Q + + N K K+ +K
Sbjct: 5 RRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.5 bits (66), Expect = 1.4
Identities = 3/34 (8%), Positives = 10/34 (29%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+ + + + + K K+ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.2 bits (65), Expect = 2.2
Identities = 4/34 (11%), Positives = 14/34 (41%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETI 308
++ ++ + ++ + K K+ +K I
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
Score = 27.2 bits (60), Expect = 7.4
Identities = 2/35 (5%), Positives = 12/35 (34%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+ ++ ++ + + + K K+ +
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 30.0 bits (68), Expect = 0.33
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 271 LTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
L + K+ +K++ KK K +
Sbjct: 79 LKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 30.0 bits (68), Expect = 0.36
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K+ + + K+ +K++ K E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.8 bits (65), Expect = 0.77
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
E + + K+ +K++ KK K
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKG 108
Score = 28.8 bits (65), Expect = 0.94
Identities = 4/32 (12%), Positives = 14/32 (43%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
++ + + K+ +K++ KK + +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.5 bits (64), Expect = 1.1
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + + K+ +K KK + E
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 28.5 bits (64), Expect = 1.3
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
E + K +K++ KK K +
Sbjct: 84 PEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.7 bits (62), Expect = 2.4
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 266 LKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
L + + + K+ +K++ KK K +
Sbjct: 73 LWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.9 bits (60), Expect = 3.6
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+ + + K+ ++ KK +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGG 109
Score = 26.9 bits (60), Expect = 3.7
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
K+ + + K+ +K++ + K E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 31.0 bits (69), Expect = 0.37
Identities = 6/44 (13%), Positives = 21/44 (47%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++K ++ K+ ++++ + + + K+ K+E + N
Sbjct: 136 TQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDN 179
Score = 28.3 bits (62), Expect = 3.0
Identities = 3/36 (8%), Positives = 18/36 (50%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++ +K+K ++ K+ ++++ + + ++
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPA 170
Score = 27.9 bits (61), Expect = 3.7
Identities = 5/37 (13%), Positives = 18/37 (48%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E + K+K ++ K+ ++++ + + K++
Sbjct: 134 ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPA 170
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 31.4 bits (70), Expect = 0.39
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ +K ++K KK KK KK KK T K +K+
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKP 407
Score = 31.0 bits (69), Expect = 0.54
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
KK KK KK KK KK KK KK ++
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 31.0 bits (69), Expect = 0.59
Identities = 13/36 (36%), Positives = 13/36 (36%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
KK K KK KK KK E EEK
Sbjct: 382 GVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 29.5 bits (65), Expect = 1.7
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 272 TRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ EK K ++KK KK KK KK K K+
Sbjct: 357 ALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKK 400
Score = 29.5 bits (65), Expect = 1.8
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K + P + +KK K KK KK KK K+ K+ E
Sbjct: 359 EAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAE 409
Score = 29.5 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+K KK KK KK KK KK KK EK
Sbjct: 370 KKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 29.1 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
KK KK KK KK KK ++ +E+K
Sbjct: 384 KKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 28.7 bits (63), Expect = 2.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+L+ D+ + ++K KK ++KK KK KK KK + KK
Sbjct: 348 KLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 28.3 bits (62), Expect = 3.3
Identities = 13/45 (28%), Positives = 16/45 (35%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+ KK KK KK KK +KK T +KK
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 31.5 bits (72), Expect = 0.42
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
Q + K + K+K + + K+ K KKK KK
Sbjct: 731 FQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHH 771
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 31.0 bits (69), Expect = 0.42
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + K K+ +KK K +K ++K +K +
Sbjct: 45 RNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYH 80
Score = 29.8 bits (66), Expect = 1.0
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ +KK K +K ++K +K K ++ +
Sbjct: 53 KRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRT 89
Score = 29.5 bits (65), Expect = 1.5
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K K+ KK K +K ++K +K + K+ +
Sbjct: 51 KVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYR 88
Score = 29.1 bits (64), Expect = 1.7
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
E KKK + + K K+ +KK K ++K
Sbjct: 38 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKL 71
Score = 29.1 bits (64), Expect = 1.7
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+KK K +K ++K +K K + ++ E+
Sbjct: 55 LRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEI 91
Score = 28.7 bits (63), Expect = 2.3
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ K K +KK K +K ++K ++ +E
Sbjct: 47 FAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEY 83
Score = 28.3 bits (62), Expect = 3.4
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
N + K + +KK K +K ++K E K ++
Sbjct: 46 NFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEY 83
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 30.8 bits (69), Expect = 0.46
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 256 PWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
W+ +T L+ R + KKK+ + +K+ +K +KK K +
Sbjct: 146 GWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEV 195
Score = 30.0 bits (67), Expect = 0.80
Identities = 19/82 (23%), Positives = 35/82 (42%)
Query: 235 RKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKK 294
+K+ V L V K + + L + + + EK+K+K K +KKK+
Sbjct: 114 KKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQ 173
Query: 295 KKKKKKKKKKKETIKKKEEKEV 316
+ +K+ +K K + EV
Sbjct: 174 LMRLRKQAEKNVEKKIDKYTEV 195
Score = 29.2 bits (65), Expect = 1.2
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ K+K+K K +KKK+ + ++ +K EK+++
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKID 190
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 30.2 bits (68), Expect = 0.47
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K KK K ++ K K K +IK+K +K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 29.5 bits (66), Expect = 0.88
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
K K K ++ K K K + KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 27.1 bits (60), Expect = 5.6
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
P +K K ++ K K K K+K K
Sbjct: 3 PKAAVKKADGKTQQALKVAKAVKSGSIKRKSK 34
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 30.9 bits (69), Expect = 0.49
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 258 EVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKK----KKKKKKKKETIKKKEE 313
E + + + K+ + + + +K+ + KK K ++T E
Sbjct: 295 EFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTE 354
Query: 314 KEVN 317
+ V
Sbjct: 355 QLVA 358
Score = 29.4 bits (65), Expect = 1.5
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
R+ +K+N + KK K + ++ + +K +
Sbjct: 318 KRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPEN 364
Score = 29.4 bits (65), Expect = 1.5
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 236 KEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKK 295
E+ L + K EF V D + + + + ++ +K+
Sbjct: 279 VELARRGNTLLQCLEK-EFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDG 337
Query: 296 KKKKKKKKKKETIKKKEEKE 315
+ KK K + + E+
Sbjct: 338 VESKKAKIEDTSNVGTEQLV 357
Score = 29.4 bits (65), Expect = 1.6
Identities = 8/51 (15%), Positives = 17/51 (33%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
R+K + E + +K+ + KK K + ++ E
Sbjct: 309 RMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAE 359
Score = 28.2 bits (62), Expect = 3.7
Identities = 10/80 (12%), Positives = 25/80 (31%)
Query: 238 IGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKK 297
+ + K + + + + K R Q +K+ + + KK K +
Sbjct: 289 LQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDT 348
Query: 298 KKKKKKKKETIKKKEEKEVN 317
++ K E + +
Sbjct: 349 SNVGTEQLVAEKIPENETTH 368
Score = 27.1 bits (59), Expect = 7.8
Identities = 5/51 (9%), Positives = 17/51 (33%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
R++ + + + E KK K + ++ ++ + +
Sbjct: 319 RIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENETTHH 369
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 31.0 bits (70), Expect = 0.50
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 278 NEKKKKKNKKKKK-KKKKKKKKKKKKKKKETIKKKEEKEVN 317
KKK+ + K+ K +KK+ E K K E +
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECS 271
Score = 27.9 bits (62), Expect = 4.4
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ KKK+ + + K+ +KKE E
Sbjct: 224 KNYSNFILIKKKEYQSLNSQYDMNYKETKAEKKESPE 260
Score = 27.1 bits (60), Expect = 8.4
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 279 EKKKKKNKKKKKKKKKKKK------KKKKKKKKETIKKKEEKEVN 317
+ + K+ K +KK K K + + + + E
Sbjct: 238 QSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETR 282
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 30.8 bits (69), Expect = 0.57
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 5/42 (11%)
Query: 279 EKKKKKNKKKKKKKKKKK-----KKKKKKKKKETIKKKEEKE 315
K KK K+ KK +K ++ + +
Sbjct: 254 AKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGAD 295
Score = 29.6 bits (66), Expect = 1.4
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
K K+ K+ KK +++K ++ ++
Sbjct: 252 TMAKSTKKEPATHKRYNLKKLTYEQRKASLVER 284
Score = 28.9 bits (64), Expect = 2.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K KK+ K+ KK T ++++
Sbjct: 253 MAKSTKKEPATHKRYNLKKLTYEQRKAS 280
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 30.6 bits (68), Expect = 0.58
Identities = 9/54 (16%), Positives = 25/54 (46%)
Query: 261 DLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
++T L Y+ +K +N+ K + +K+ + ++ +E I + + +
Sbjct: 289 EVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQ 342
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 29.7 bits (66), Expect = 0.58
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKK 304
P + + K KK K +K K KKKK+K+K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 28.9 bits (64), Expect = 1.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
K + K KK K +K K KK+ K+KE
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 28.9 bits (64), Expect = 1.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKK 305
K K KK K +K K KKKK+
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKR 29
Score = 28.5 bits (63), Expect = 1.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+ K KK K +K K KKKK+K
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRK 30
Score = 26.2 bits (57), Expect = 9.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKK 305
K K K +K K KKKK+K+
Sbjct: 6 SGKAAKKAGKAQKNITKTDKKKKRKR 31
Score = 26.2 bits (57), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K KK K +K K + KK++ KE
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 30.9 bits (69), Expect = 0.62
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K KK KK+K +++KKK+ +E K++E +
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNK 854
Score = 30.2 bits (67), Expect = 1.1
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K + KK KK+K +++KKK+ +++ +++ K+
Sbjct: 820 RAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKK 855
Score = 27.5 bits (60), Expect = 6.9
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 274 PSQGNEKKKKKNK---------KKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K+ K + K + KK KK+K ++E K+ EEKE
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKE 849
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 29.7 bits (65), Expect = 0.64
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
DR+ ++ N KK+ + K
Sbjct: 97 DRIRAYNEENIAMKKRLANEAGSTGSAPATGGVXKPH 133
Score = 27.8 bits (60), Expect = 2.8
Identities = 2/37 (5%), Positives = 8/37 (21%)
Query: 266 LKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKK 302
Y+ + + + K + +
Sbjct: 100 RAYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 30.2 bits (67), Expect = 0.74
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKE 312
K K KK KK+ + + +KE
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 28.6 bits (63), Expect = 2.4
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKE 306
K K KK KK+ +KE
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 27.9 bits (61), Expect = 4.4
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKK 305
K KK KK+ +K+
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 27.1 bits (59), Expect = 8.7
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKK 303
G K KK KK+ +K+
Sbjct: 4 GKNPGLKAGGGKKGAKKRTIDPLSRKE 30
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 29.6 bits (66), Expect = 0.80
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
K +K ++K K ++ K+K K K+ETI+K +E
Sbjct: 110 KLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE 145
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 29.4 bits (65), Expect = 0.82
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 273 RPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+P+ G +K K+ K + KK KKK K K K+
Sbjct: 4 QPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKD 37
Score = 27.8 bits (61), Expect = 2.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++ KK K+ K + KK KKK T K ++K +
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKVNH 41
Score = 27.4 bits (60), Expect = 4.1
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+KK K+ K + KK KKK K K K V
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKVNHAV 43
Score = 26.7 bits (58), Expect = 6.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
G + + K K+ K + KK KKK K K++
Sbjct: 2 GKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 30.3 bits (68), Expect = 0.89
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K+ K+ ++ +K K + K K E KK ++ +
Sbjct: 537 NKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCS 575
Score = 28.8 bits (64), Expect = 2.4
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+K K + K+ K ++ K +K+V
Sbjct: 418 DLSNRKLVGKINTNSNYVHRNKQNDKLFRDEWWKVIKKDV 457
Score = 27.6 bits (61), Expect = 5.7
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KKK+ K+ K+ ++ +K K K + +
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEV 565
Score = 27.2 bits (60), Expect = 8.3
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ +K K + K+ ++E
Sbjct: 417 NDLSNRKLVGKINTNSNYVHRNKQNDKLFRDE 448
Score = 27.2 bits (60), Expect = 8.9
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+Y + + + K+ K + KK +K ++ K++ +
Sbjct: 542 QYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSD 590
Score = 27.2 bits (60), Expect = 9.2
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E+ + K K K + +K+ + K +
Sbjct: 190 ERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDW 225
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.1 bits (68), Expect = 0.96
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+++ KK+KK+ + KKK + + + EV
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVT 512
Score = 28.9 bits (65), Expect = 2.2
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
++ KK+KK+ + KKK + T++ + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQ 507
Score = 28.5 bits (64), Expect = 3.3
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K ++ KK+KK+ + KKK + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQ 507
Score = 27.4 bits (61), Expect = 7.6
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K +++ KK+KK+ + KKK E +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN 508
Score = 27.0 bits (60), Expect = 9.7
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
P + KK+K + + KKK + + + + ++ + E
Sbjct: 475 PIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDALE 516
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 30.2 bits (68), Expect = 0.96
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ K+ ++K + KK+ K + + ++ +
Sbjct: 629 DTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSS 664
Score = 29.0 bits (65), Expect = 2.6
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K K+ ++K + KK+ + E +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRG 660
Score = 28.3 bits (63), Expect = 3.8
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+ ++K + KK+ K + +
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEG 662
Score = 28.3 bits (63), Expect = 4.3
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+ ++K + KK+ K + E
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGE 661
Score = 27.9 bits (62), Expect = 6.0
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K+ K+ ++K + KK+ + +E G
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEG 662
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 29.5 bits (66), Expect = 1.1
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
EK++ + K KK K+ +KK+ +K ++K
Sbjct: 156 EEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDK 192
Score = 27.6 bits (61), Expect = 4.9
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+K ++ ++ + K KK K+ +K+ + K +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIK 190
Score = 27.6 bits (61), Expect = 5.1
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
EK ++K + + K KK K+ +KKE +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAI 189
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 29.5 bits (66), Expect = 1.1
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K+K + + KK+ KK ++
Sbjct: 157 EAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 29.1 bits (65), Expect = 1.4
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
E K+K + + KK+ KK + K++
Sbjct: 157 EAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLA 195
Score = 26.8 bits (59), Expect = 7.2
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
KY+ + + K KK+ KK E+ K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 26.5 bits (58), Expect = 9.5
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K + K K + KK+ KK E
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESD 189
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 28.6 bits (63), Expect = 1.1
Identities = 5/31 (16%), Positives = 17/31 (54%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKK 299
R+ + N +K+++ +K +++ + K +
Sbjct: 72 SRVLKYVDTNLQKQRELQKANQEQYAEGKMR 102
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 29.7 bits (66), Expect = 1.1
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
EKK K + + KK ++ K K+++ + K
Sbjct: 257 EKKFTKEQYAAESKKYRQTKLSKEERAARVAAK 289
Score = 29.3 bits (65), Expect = 1.4
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K +KK K++ + KK ++ K + +++ +
Sbjct: 253 FKPTEKKFTKEQYAAESKKYRQTKLSKEERAAR 285
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 29.4 bits (67), Expect = 1.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKE 306
K+KK +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHH 180
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 29.3 bits (65), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E+ + K+ KK K+ KK K T ++K V
Sbjct: 106 EQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIV 143
Score = 27.7 bits (61), Expect = 3.3
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
R E KK K KK K K K++ +K +
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
Score = 27.3 bits (60), Expect = 4.2
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K +++ + K+ KK K+ KK K +
Sbjct: 101 RKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAA 137
Score = 26.9 bits (59), Expect = 5.8
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+ R + + K+N+K + +K ++++ + K+ + K+ +K
Sbjct: 77 KFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKT 125
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.1 bits (68), Expect = 1.2
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
N++ K +K + + +K + + E+E
Sbjct: 941 NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978
Score = 27.4 bits (61), Expect = 8.8
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+R + G E K + ++K ++ K+ K +K I E E
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 29.6 bits (66), Expect = 1.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKK 310
KK KK K KK K + ++K
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDD 141
Score = 29.2 bits (65), Expect = 1.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
KK++KK K KK K + ++K E
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSPMP 148
Score = 26.9 bits (59), Expect = 7.3
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
Y L R + KK+ K K KK K + ++K
Sbjct: 102 YSNLLRANMDGLKKRDKKNKSKKSKPAQGGEQKLIS 137
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling,
chromo domain, transcription factor, transcription
regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A
3e9f_A*
Length = 130
Score = 28.5 bits (62), Expect = 1.3
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
DR+ ++ N KK+ + K+ KK +
Sbjct: 95 DRIRAYNEENIAMKKRLANEAKEAKKSLLEHHHHH 129
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 27.8 bits (61), Expect = 1.3
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 286 KKKKKKKKKKKKKKKKK 302
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.8 bits (61), Expect = 1.3
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 287 KKKKKKKKKKKKKKKKK 303
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.8 bits (61), Expect = 1.3
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 288 KKKKKKKKKKKKKKKKK 304
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.8 bits (61), Expect = 1.3
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 289 KKKKKKKKKKKKKKKKK 305
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
Score = 27.4 bits (60), Expect = 1.8
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 281 KKKKNKKKKKKKKKKKK 297
K+ N++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 29.1 bits (65), Expect = 1.4
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
+K++KK ++KK+ + +++K ++
Sbjct: 104 QKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 27.6 bits (61), Expect = 5.4
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKK 311
+ +K++KK+ ++KK+ + ++E ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 27.2 bits (60), Expect = 6.9
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ +K++KK+ ++KK+ + +K EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 27.2 bits (60), Expect = 6.9
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ +K +KK+ ++KK+ + +++K E
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD,
WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Length = 195
Score = 29.0 bits (64), Expect = 1.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+KNK K +K KKK+ K + KE + +E
Sbjct: 157 GGSKEKNKTKPEKAKKKEGDPKPRASKEDNRAGSRRE 193
Score = 26.7 bits (58), Expect = 8.0
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+G K K+K K K +K KKK+ + KE+
Sbjct: 148 EGQMYPGKGGGSKEKNKTKPEKAKKKEGDPKPRASKEDNRAG 189
>1eay_C CHEA; signal transduction complex, kinase, response regulator,
chemotaxis; 2.00A {Escherichia coli} SCOP: d.58.24.1
Length = 74
Score = 27.5 bits (61), Expect = 1.4
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 200 EEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAV 234
EE H + V + SL A + + I AV
Sbjct: 23 EELGHLTTLTDVVKGADSLSAILPGDIAEDDITAV 57
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human
papillomavirus type 16} SCOP: b.121.6.1
Length = 505
Score = 29.8 bits (67), Expect = 1.4
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 16/59 (27%)
Query: 257 WEVSDLTPRLKYD---------------RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKK 300
WEV +L + D +P K+K K+KK+K
Sbjct: 447 WEV-NLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 29.9 bits (67), Expect = 1.4
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK--KEEKE 315
K K + + + + KKKK+ + KE K+
Sbjct: 670 HVLKNKEEYEICNVDDNCRSQNNKKKKDIVTILLKELKD 708
Score = 27.6 bits (61), Expect = 6.4
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K ++ K+ K + +K K+T +KE
Sbjct: 388 VKKLEEFYKQNLKYSMEIQKWKKTKNNYYDKE 419
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 28.4 bits (64), Expect = 1.5
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETI 308
K K ++ + +K +K + +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPKGV 31
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 29.3 bits (65), Expect = 1.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
KK +K K+ KK K ++K+ +K K
Sbjct: 263 STKKNDKPKRDHKKFYPTKLTAAQRKDRVKTK 294
Score = 28.5 bits (63), Expect = 2.7
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
P + KK K+ KK K ++K K +
Sbjct: 258 PERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQL 297
Score = 27.7 bits (61), Expect = 4.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K KK K K+ KK K T +++++
Sbjct: 262 KSTKKNDKPKRDHKKFYPTKLTAAQRKDR 290
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 28.4 bits (63), Expect = 1.7
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
RL + EK + K+ K+K K+ K K + KK +
Sbjct: 88 RLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWAS 134
Score = 28.0 bits (62), Expect = 2.7
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K+K K+ K K +KK +++ K+ +
Sbjct: 108 LKRKIKRTSGKAITKLLSEKKGDTWASVQSKKSDHLKN 145
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 29.4 bits (65), Expect = 1.7
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
P++ K + K K + KKK + + I + ++
Sbjct: 519 PAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHED 560
Score = 28.3 bits (62), Expect = 3.8
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 269 DRLTRPSQGNEKKKKKNKK-----KKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + K++ K + KKK + +E + E
Sbjct: 510 QHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDG 561
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 29.7 bits (67), Expect = 1.8
Identities = 3/36 (8%), Positives = 16/36 (44%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+++K + + +++ + ++++EE
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREEL 767
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 28.5 bits (63), Expect = 1.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
E+K K NK+KKK +K +K +K K K +++ G
Sbjct: 106 EEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKG 145
Score = 28.5 bits (63), Expect = 2.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
K ++ K K K+KKK +K +K +K + +
Sbjct: 101 RKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKF 138
Score = 28.2 bits (62), Expect = 2.6
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K +R + EKKK + +K +K K + K K+ K +K
Sbjct: 100 VRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQK 149
Score = 27.4 bits (60), Expect = 4.7
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K R + + K++++ K + +K +++K K K+K+ +K K
Sbjct: 77 KAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEK 127
Score = 27.0 bits (59), Expect = 5.0
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K K KKK +K +K +K K + + K++ +
Sbjct: 107 EKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAK 144
Score = 26.2 bits (57), Expect = 9.3
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ K+K K +K +K +K K + + K++ +
Sbjct: 110 KANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAF 147
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 28.7 bits (65), Expect = 1.8
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
K++ + + + + +K+ + KE +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.5 bits (62), Expect = 4.9
Identities = 5/37 (13%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
+RL + K++ + + + + +K+ + K+
Sbjct: 157 ERLPK-----PKREAFLEANRAELVRFQKEARALLKE 188
Score = 27.2 bits (61), Expect = 5.5
Identities = 3/38 (7%), Positives = 13/38 (34%), Gaps = 7/38 (18%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKK 302
+ K + + + + +K+ + K+ +
Sbjct: 161 KPKREAFL-------EANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 8.5
Identities = 2/29 (6%), Positives = 14/29 (48%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
K++ + + + + +K+ + + + +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 8.6
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K++ + + + + +K+ KE +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 28.5 bits (64), Expect = 1.9
Identities = 4/32 (12%), Positives = 8/32 (25%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
G K K + + K + +
Sbjct: 78 YAGIAFWATGEWKAKNEFTQAYAKLMNQYRGI 109
Score = 26.5 bits (59), Expect = 7.0
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIK 309
+ K K + + K + +
Sbjct: 85 ATGEWKAKNEFTQAYAKLMNQYRGIYS 111
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 29.0 bits (65), Expect = 2.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + +K +KKKKKK K + + + EE E
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 29.0 bits (65), Expect = 2.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + K + +K +KKKKKK K E E E
Sbjct: 358 DAELKALLQSSASRKTQKKKKKKASKTAENATSGETLE 395
Score = 29.0 bits (65), Expect = 2.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+K +KKKKKK K + +E + +
Sbjct: 370 SRKTQKKKKKKASKTAENATSGETLEENEAGD 401
Score = 29.0 bits (65), Expect = 2.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K ++ +K +KKKKKK K + T + E+ G
Sbjct: 362 KALLQSSASRKTQKKKKKKASKTAENATSGETLEENEAG 400
Score = 28.2 bits (63), Expect = 3.4
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
E K +K +KKKKKK K + + +E
Sbjct: 360 ELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENEA 399
Score = 27.8 bits (62), Expect = 5.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K +KKKKKK K + ET+++ E +
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 29.3 bits (66), Expect = 2.1
Identities = 9/92 (9%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 231 IEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKK 290
+ +R I + + + + ++K + ++ PS E + +
Sbjct: 108 WKQIRSII--MRENFIPTIVNFSAEEISDAIRE-KMKKNYMSNPSYNYEIVNRASLAAGP 164
Query: 291 KKKKKKKKKKK-------KKKKETIKKKEEKE 315
K + + + ++K E+
Sbjct: 165 MVKWAIAQLNYADMLKRVEPLRNELQKLEDDA 196
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 28.2 bits (62), Expect = 2.1
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ S + +K ++ K+KK +KK+ +K + K K+
Sbjct: 96 KNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKK 141
Score = 27.4 bits (60), Expect = 3.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
++ K KK +KK+ +K + K + KK E K+
Sbjct: 111 VRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKT 147
Score = 27.1 bits (59), Expect = 5.0
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ + E K+KK +KK+ +K + K K + + K+ K+
Sbjct: 99 DASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
Score = 27.1 bits (59), Expect = 5.2
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ +KK +KK+ +K + K K KK ET K K+ G
Sbjct: 107 AEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKG 155
Score = 27.1 bits (59), Expect = 5.9
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+K KK + +K ++ K+KK + KK+ +++
Sbjct: 94 RRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRK 130
Score = 26.3 bits (57), Expect = 8.8
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+K KK+ +K + K K KK + K+ G
Sbjct: 117 KKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGG 156
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 26.9 bits (60), Expect = 2.6
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K K KK+ +++ +K K K ++ + V
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEFDLRDYRNVE 38
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 28.7 bits (65), Expect = 2.6
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ + K+KK + K+ + + +++K+
Sbjct: 201 LTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVK 237
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 28.4 bits (63), Expect = 2.8
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
Y R + K+K K ++K+ K + K +K +E + + E
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
Score = 28.0 bits (62), Expect = 3.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
EK+K+K K ++K+ K + K +K K + E+
Sbjct: 162 EEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
Score = 26.9 bits (59), Expect = 7.4
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++ + K+K+K K ++K+ K + +K E+++
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLG 195
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 28.1 bits (62), Expect = 2.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
++ K + KK K +KK KK + K ++T K +
Sbjct: 110 AALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRG 149
Score = 27.3 bits (60), Expect = 4.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
E ++ K++ KK K +KK KK + K + +
Sbjct: 109 EAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGA 145
Score = 27.3 bits (60), Expect = 5.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +++ KK K +KK KK + K +K + K ++ K
Sbjct: 113 REIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKG 152
Score = 27.3 bits (60), Expect = 5.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
++ ++ K++ KK K +KK KK + K ++ +
Sbjct: 104 RDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQ 140
Score = 26.6 bits (58), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ K++ KK K +KK KK + K +K ++ ++ G
Sbjct: 114 EIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKG 152
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 28.4 bits (63), Expect = 2.9
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 279 EKKKK-----KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+KK+ K K + K K K+ E I + N
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFN 339
Score = 27.7 bits (61), Expect = 5.9
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 284 KNKKK--KKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KK+ K+K K + K K + +K+ + ++
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISA 332
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 28.3 bits (63), Expect = 3.0
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+++ +++ ++KK ++ +E K K E
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEAS 307
Score = 26.8 bits (59), Expect = 9.8
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+++ ++ ++KK ++ ++E K E
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEASS 308
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 28.3 bits (63), Expect = 3.0
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 278 NEKKK--KKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
N++K + K K K E + +K
Sbjct: 250 NKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLIEK 285
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 100
Score = 27.1 bits (61), Expect = 3.1
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+K ++KK++ ++K ++ K+ I+K
Sbjct: 3 RKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVTSLS 38
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 28.5 bits (63), Expect = 3.1
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
+++KK ++ K++KK K+K+ + +
Sbjct: 114 QREKKLSRTKEEKKAIKEKQDAEAEP 139
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 28.0 bits (62), Expect = 3.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
+K++ K +++ +KKK +KK KK+ + +E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 28.2 bits (62), Expect = 3.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 289 KKKKKKKKKKKKKKKKKETIKKKE 312
K K+ K KK +KK+ + +KE
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKE 28
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 27.9 bits (63), Expect = 3.4
Identities = 4/36 (11%), Positives = 18/36 (50%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+++ + +KK ++K E ++ +++++
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRKA 186
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane
targeting, GTPase, GAP, longin domain, SEDL, transport
protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4
PDB: 2go5_1
Length = 185
Score = 27.8 bits (61), Expect = 3.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
+ +K KK + + + +K K+K K K+ KKE
Sbjct: 147 KFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 184
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4
tail, DNA backbone recognitio methyllysine recognition,
H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB:
3oa6_A* 3ob9_A*
Length = 110
Score = 27.1 bits (59), Expect = 3.5
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKK 300
D + R + N + ++K +K + + +KK
Sbjct: 79 DHVLRDTDENRRLQRKLARKAVARLRSTGRKK 110
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 28.3 bits (63), Expect = 3.5
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
KK + + K + K K K K++ +
Sbjct: 232 LTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNK 271
Score = 27.1 bits (60), Expect = 6.8
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K KK + + + K + K + K+ +
Sbjct: 225 VNYKNYILTKKTEYEIQTNKYDNEFKNKNSNDKDAPD 261
>3vuv_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.11A {Plasmodium falciparum}
Length = 339
Score = 28.3 bits (63), Expect = 3.5
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 278 NEKKK--KKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
N++K + K K K E + +K
Sbjct: 284 NKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLIEK 319
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding
3-helical bundle FO turn helix motif, HTH motif; HET:
UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9
a.121.1.1
Length = 199
Score = 27.8 bits (62), Expect = 3.6
Identities = 13/140 (9%), Positives = 36/140 (25%), Gaps = 24/140 (17%)
Query: 4 KEALAFAVLKYALGAGPAKTGKNQRSTNSKGLSRTPGRESLDESHHFSPPQALQASIDVV 63
+ L A +Y + + P + ++
Sbjct: 52 RFTLDMACAQYLFNVVISLQ------------------LQAISTFPTDPEGVWTSFNQLL 93
Query: 64 RGAGIKD---ADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVK---SLPDLLAE 117
G+ A L ++ T + +++ A G+V + +
Sbjct: 94 FDRGLGSLVPALAPESLDDLPDEVSALRRTTEKNTTTLINLAKQHGLVHHDIAPGTYIVG 153
Query: 118 VEAVSSSDVSAKRSFAAQPA 137
+ +S ++A + +
Sbjct: 154 LITISRPPITALATISENSH 173
>3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 144
Score = 27.3 bits (60), Expect = 3.8
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+K+ + + K + KK K ++K
Sbjct: 110 RKRFAGLSEIMEIPVLKGEIIMPTKKSKGPKGKKK 144
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA
binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Length = 1308
Score = 28.3 bits (62), Expect = 3.9
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 13/73 (17%)
Query: 243 KFLASVVGKTEFRPWEV--------SDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKK 294
K+ V + P V S LTP Y ++ + K K +K+K
Sbjct: 1179 KYYLQVCQSSRGIPNTVEKLVKLSGSHLTPVC-YSFISYV----QNKSSDAPKCSEKEKA 1233
Query: 295 KKKKKKKKKKKET 307
K +ET
Sbjct: 1234 AVSTTMAKVLRET 1246
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase
subunit A', DNA-directed...; transcription, fusion
protein, chimera protein, multiprotein; 3.30A
{Pyrococcus furiosus}
Length = 436
Score = 28.1 bits (63), Expect = 4.2
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
R+K + + +N++ + + K+ KK K++
Sbjct: 166 RIKLTDEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKERM 206
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 28.2 bits (62), Expect = 4.3
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
D + EK K+ +K K + K+ K+ + + E+N
Sbjct: 276 DIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMN 324
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural genomics;
NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 26.1 bits (57), Expect = 4.7
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 287 KKKKKKKKKKKKKKKKKKKETI 308
+K KKK ET
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQ 23
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 26.8 bits (59), Expect = 4.9
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 270 RLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
RL R + +K +++K+KK + KK K+ + +
Sbjct: 90 RLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRNAD 135
Score = 26.5 bits (58), Expect = 7.4
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKK---KKKKKKKKKKKKK 305
RL L + ++++K KK + KK K+ KK ++
Sbjct: 90 RLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Length = 142
Score = 26.9 bits (60), Expect = 5.0
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIK 309
K KK + K + +K ++
Sbjct: 50 TSKPAGFMKKLRAAKLAAPENEKPAPVR 77
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 27.6 bits (62), Expect = 5.4
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+ K++K + ++++++KK K K+ K + E+
Sbjct: 227 EEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
Score = 27.6 bits (62), Expect = 5.9
Identities = 6/37 (16%), Positives = 20/37 (54%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K + + ++++ K++K+ + +++EEK+
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKK 252
Score = 26.8 bits (60), Expect = 8.2
Identities = 8/39 (20%), Positives = 22/39 (56%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K++K++ + ++++++KK K KK + + +N
Sbjct: 231 AKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELMN 269
Score = 26.8 bits (60), Expect = 8.4
Identities = 8/38 (21%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
E+ ++ + K++K+ + ++++E KK + K+V
Sbjct: 222 EEPMEEEEAAKEEKEDSDDEAAVEEEEE-EKKPKTKKV 258
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 26.5 bits (58), Expect = 5.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
R+ R E K K K K K KKKK+ +KK
Sbjct: 89 SRIIRAFLTEEVKIVKRKMISKPKTDKKKKRSQKK 123
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 27.8 bits (62), Expect = 5.9
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
G+ + + +K KK +K
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMQKPIKKDPNRYHGEKMT 38
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 27.6 bits (61), Expect = 5.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 288 KKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KK K KKK K ++ + KE +K+ E
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLP 29
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 27.0 bits (59), Expect = 6.2
Identities = 3/35 (8%), Positives = 17/35 (48%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K +++K ++ + ++ K + ++ ++
Sbjct: 143 IQAKADAQREKALNEEAEARRLKNRAARDRRAQRV 177
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 26.5 bits (58), Expect = 6.3
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 250 GKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
++ + + ++ S+ KK K +++ K +K K +K +
Sbjct: 35 KSSKGDFLIRTKKDGKQVWEA---ASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVG 91
Query: 310 KKEEKE 315
K E
Sbjct: 92 VKAALE 97
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i
Length = 121
Score = 26.6 bits (58), Expect = 6.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
+R+ R E+K K K++ + KK +KK KK
Sbjct: 87 ERIIRAFLIEEQKIVKKVVKEQTEAAKKSEKKAKK 121
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 6.8
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 7/23 (30%)
Query: 43 SL----DESHHFSPPQALQASID 61
SL D+S +P A++A+++
Sbjct: 28 SLKLYADDS---APALAIKATME 47
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 27.2 bits (60), Expect = 6.8
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 279 EKKKK-----KNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+KK NK K +K + + +K++ ++
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDE 276
Score = 26.8 bits (59), Expect = 9.9
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ K K +K + + E EV
Sbjct: 243 DVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVA 281
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 26.9 bits (60), Expect = 7.0
Identities = 3/24 (12%), Positives = 13/24 (54%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKK 310
+ ++K+ +++K ++ +I
Sbjct: 180 QPPRRKEVPRRRKNHRRSGCSIAS 203
Score = 26.9 bits (60), Expect = 8.5
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 18/69 (26%)
Query: 232 EAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPR-LK--YDRLTRPSQGNEKKKKKNKKK 288
E +RK+IG ++ E S T + +K +D + + ++K +
Sbjct: 145 EELRKQIGAA-AYI------------ECSSKTQQNVKAVFDTAIK--VVLQPPRRKEVPR 189
Query: 289 KKKKKKKKK 297
++K ++
Sbjct: 190 RRKNHRRSG 198
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 26.1 bits (57), Expect = 7.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKK 305
++K K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 26.1 bits (57), Expect = 7.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKK 304
++K+ + KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 25.7 bits (56), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKK 301
K+K+ KK K+K+ KKKK+ +
Sbjct: 81 ERKRKESPKKNKEKRMKKKKRLNR 104
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 27.5 bits (60), Expect = 7.3
Identities = 7/51 (13%), Positives = 19/51 (37%)
Query: 264 PRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
P + + + +K + + K +K+K K+ + ++ K
Sbjct: 323 PLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAK 373
Score = 27.1 bits (59), Expect = 7.8
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
P G +K + + K +K+K K+ K + + K
Sbjct: 335 PYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVK 375
Score = 27.1 bits (59), Expect = 8.7
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+K + + K +K+K K+ + +E +V
Sbjct: 338 GTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKV 374
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 26.9 bits (59), Expect = 8.1
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
K K K +K + K + +K +
Sbjct: 28 IKAKHGGALPKAEKPAAIAEPKFYPADDVKPR 59
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 26.4 bits (58), Expect = 8.4
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
++ K+K + K++K+++K +K K+
Sbjct: 144 KEIKEKYPRPPKRRKEERKGRKPWKE 169
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 26.3 bits (58), Expect = 8.5
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKK 302
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 26.8 bits (60), Expect = 8.6
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKE 306
+K + ++ + +K+K K
Sbjct: 234 QKVGLRAARRTGLVRGGQKEKMAMKA 259
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 26.2 bits (57), Expect = 8.7
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKK 303
++ N+ + KK+ K
Sbjct: 17 VHRRNNRWAENNYKKRLLGTAFKS 40
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 26.7 bits (58), Expect = 8.9
Identities = 2/29 (6%), Positives = 12/29 (41%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ + ++ + + K ++ K+ +
Sbjct: 242 AQGRTLRDVGELTRSSTKTRRSIKRPELG 270
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 26.7 bits (60), Expect = 9.1
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKE 306
KKK + K + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHH 185
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 26.7 bits (59), Expect = 9.2
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 283 KKNKKKKKKKKKKKKKKKKKK 303
+N+ + K KK++ +K
Sbjct: 258 GENRVSIRAAGGKMKKERSRK 278
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 26.2 bits (58), Expect = 9.7
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
++ K +++ +KK + T K
Sbjct: 127 HPAAASVVAREMKIVTERRAEKKADSRVTYSK 158
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 26.5 bits (59), Expect = 9.8
Identities = 5/22 (22%), Positives = 15/22 (68%)
Query: 286 KKKKKKKKKKKKKKKKKKKKET 307
+ ++ K+K +++ +K+KE+
Sbjct: 171 RLRRDSKEKNERRLAYQKRKES 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.126 0.340
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,651,244
Number of extensions: 294689
Number of successful extensions: 5344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3635
Number of HSP's successfully gapped: 765
Length of query: 318
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 224
Effective length of database: 4,077,219
Effective search space: 913297056
Effective search space used: 913297056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.5 bits)