RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15801
(318 letters)
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 219
Score = 59.6 bits (143), Expect = 4e-11
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 144 PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFT 203
D++ N + + S+ +P +RI + KAG+RYE +NLG +H+LR A+ L+T+ +
Sbjct: 6 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGAS 65
Query: 204 HFGIIRHVQQAGGSLYATVDREGIVYTIE 232
F I R ++ GG L T RE + YT+E
Sbjct: 66 SFKITRGIEAVGGKLSVTSTRENMAYTVE 94
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 202
Score = 58.2 bits (139), Expect = 9e-11
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 155 VKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQA 214
+ V + + + I+ ++V G+RY T D G+ H+L +T + ++R +
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELL 58
Query: 215 GGSLYATVDRE 225
GG+ +T+DRE
Sbjct: 59 GGTFKSTLDRE 69
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 232
Score = 57.8 bits (138), Expect = 2e-10
Identities = 30/121 (24%), Positives = 49/121 (40%)
Query: 137 ATKALFSPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAG 196
A P+ Q N ++V S + P + V AG+RYE+ N G + + A
Sbjct: 4 AQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAF 63
Query: 197 LSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRP 256
T+ + + V+ G L A RE Y I+A+ K++ + LA +V
Sbjct: 64 KGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLED 123
Query: 257 W 257
Sbjct: 124 S 124
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 220
Score = 57.4 bits (137), Expect = 2e-10
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 143 SPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEF 202
+ + + + N +KV + N + + + AG+R+E + G TH+L A STE
Sbjct: 3 TDNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV 62
Query: 203 THFGIIRHVQQAGGSLYATVDREGIVY 229
+ ++ GG+ T RE ++Y
Sbjct: 63 EGRAMAETLELLGGNYQCTSSRENLMY 89
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 50.8 bits (120), Expect = 4e-08
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 153 NKVKVVSV-NETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHV 211
N + V + N ++ A + V F +GA E P N G+++ L F
Sbjct: 8 NGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSN-------LWKNIFLSKENSAVA 60
Query: 212 QQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWE 258
+ G +L + + R+ Y + ++ FL + +
Sbjct: 61 AKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLS 107
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 222
Score = 50.9 bits (120), Expect = 4e-08
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 144 PDIQSGTSYNKVKVVSV-NETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEF 202
P ++ N + + + + A + + AG+R E N G H L A T+
Sbjct: 1 PGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNR 60
Query: 203 THFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWE 258
GI ++ G L A RE VY ++++++I L+ ++ K+
Sbjct: 61 PQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSA 116
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 39.9 bits (92), Expect = 1e-04
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%)
Query: 1 ASAKEALAFAVLKYALGAGPA-KTGKN------QRSTNSKGLSRTPGRE----------- 42
+ EA AF+VL++ LGAGP K G N Q
Sbjct: 29 IGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG 88
Query: 43 ---SLDESHHFSPPQALQASIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVV 99
+ +A + + + + D+ K LK S E+ + +D V
Sbjct: 89 FYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVG 148
Query: 100 RQAVTTGVVKSLPDLLAEVEAVSSSDVS--AKRSFAAQPAT 138
QA+ G +L +++AV+ +DV AK+ + + +
Sbjct: 149 SQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSM 189
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 217
Score = 37.9 bits (87), Expect = 9e-04
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 54 QALQASIDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTGVVKSLPD 113
+ ++ I DA++ R KA LK L S + + V+ + RQ VTTG S +
Sbjct: 109 NEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEE 168
Query: 114 LLAEVEAVSSSDVS--AKRSFAAQPATKALFSPDIQSGTSYNKVK 156
+ +V+ ++ D+ A +P + + + + ++
Sbjct: 169 VFEQVDKITKDDIIMWANYRLQNKPVSMVALGN-TSTVPNVSYIE 212
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 34.8 bits (80), Expect = 0.004
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KNK K K +++ K + + +K+E + K++ +E
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQE 33
Score = 29.8 bits (67), Expect = 0.18
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K K K K +++ K + + +K++ + KE+ +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE-----LVFKEDGQEYA 35
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 218
Score = 34.8 bits (79), Expect = 0.008
Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 26/181 (14%)
Query: 1 ASAKEALAFAVLKYALGAGPAKTG-------KNQRSTNSKGLSRTPGRESLDESHH---- 49
++ + G+ A K + L SL
Sbjct: 31 VNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWG 90
Query: 50 ----FSPPQALQASIDVVR------GAGIKDADIARGKALLKRHLADSFETLDSTVD--S 97
+ I + D ++ R K+LLK L +E+ + D
Sbjct: 91 FSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANL 150
Query: 98 VVRQAVTTGVVKSLPDLLAEVEAVSSSDVS--AKRSFAAQPATKALFSPDIQSGTSYNKV 155
+ + + G SL + +++A++ DV A + Q A I+ Y ++
Sbjct: 151 LGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQ-IEGLLDYMRI 209
Query: 156 K 156
+
Sbjct: 210 R 210
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 32.3 bits (73), Expect = 0.055
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ K K+ + +K K+ + IK E K
Sbjct: 220 IRSKFEWHTLSKEYETQKVPKENAENYLIKISENK 254
Score = 32.3 bits (73), Expect = 0.062
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ +K K+ + K + K K + + E +
Sbjct: 234 ETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYS 271
Score = 32.3 bits (73), Expect = 0.067
Identities = 4/39 (10%), Positives = 14/39 (35%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ K + K+ + +K K+ + + + +
Sbjct: 220 IRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAK 258
Score = 30.4 bits (68), Expect = 0.23
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K + + K+ + +K K+ + I + +
Sbjct: 220 IRSKFEWHTLSKEYETQKVPKENAENYLIKISENKND 256
Score = 30.0 bits (67), Expect = 0.30
Identities = 5/43 (11%), Positives = 12/43 (27%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
E + + +K K+ + K E + +
Sbjct: 222 SKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLN 264
Score = 28.5 bits (63), Expect = 0.96
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ + K + K+ + +K KE + K
Sbjct: 216 RDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISEN 253
Score = 28.1 bits (62), Expect = 1.3
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 279 EKKKKKNKKKKK---KKKKKKKKKKKKKKKETIKKKEEKE 315
K + + K K+ + +K K+ + E
Sbjct: 213 MKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISE 252
Score = 27.7 bits (61), Expect = 1.7
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 274 PSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ E K + + K + K+ ET K +E N
Sbjct: 202 EACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAEN 245
Score = 26.9 bits (59), Expect = 3.0
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK-ETIKKKEEKEVNG 318
+ N + K+ K + + K + T+ K+ E +
Sbjct: 188 AKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVP 239
Score = 26.5 bits (58), Expect = 3.7
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
GN+ K + K ++ K + E K K+
Sbjct: 97 GNDMDFGGYSTKAENKIQEVFKGAHGEISEHKIKNFRKK 135
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 31.9 bits (72), Expect = 0.088
Identities = 8/68 (11%), Positives = 22/68 (32%)
Query: 244 FLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
F ++ KT F E+ + + + +K++ K K+ +
Sbjct: 174 FTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRT 233
Query: 304 KKETIKKK 311
++ +
Sbjct: 234 IEKITPIE 241
Score = 26.1 bits (57), Expect = 5.4
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+ + +K++ K K+ ++
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKITP 239
Score = 25.4 bits (55), Expect = 8.9
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K + +K++ K + EK
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKITP 239
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 31.6 bits (71), Expect = 0.12
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K+ K+ ++ +K K + K K E KK ++ +
Sbjct: 255 NKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCS 293
Score = 31.2 bits (70), Expect = 0.16
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
KKK+ K+ K+ ++ +K K K + +
Sbjct: 248 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEV 283
Score = 30.8 bits (69), Expect = 0.20
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
N++ K+ + +K K + K K + +KK EK
Sbjct: 255 NKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEK 291
Score = 29.6 bits (66), Expect = 0.45
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
KKK++ K+ K+ ++ +K K E K E +
Sbjct: 248 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLK 286
Score = 28.9 bits (64), Expect = 0.89
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
++KK++ NK+ K+ ++ +K K + K E
Sbjct: 248 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEV 283
Score = 28.1 bits (62), Expect = 1.4
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K+ +KKK++ K+ K+ ++ +K E K +
Sbjct: 244 KEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIK 280
Score = 26.9 bits (59), Expect = 3.1
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 279 EKKKKKNKKKKK---KKKKKKKKKKKKKKKETIKKKEEKEVNG 318
K+ KKK+ K+ K+ ++ +K + + + +
Sbjct: 241 NSYKEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEV 283
Score = 26.6 bits (58), Expect = 4.4
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ K+ + +K K + K K + K E+
Sbjct: 256 KQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLN 296
Score = 26.2 bits (57), Expect = 5.8
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 14/55 (25%)
Query: 278 NEKKKKKNKKKKKKKKKKKKK--------------KKKKKKKETIKKKEEKEVNG 318
+K K K + K+K + KKK++ K+ ++ G
Sbjct: 213 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKG 267
Score = 25.8 bits (56), Expect = 6.9
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 266 LKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
LK + +P + + K+K N K+ KKK++ K+ K+ + +K ++
Sbjct: 222 LKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKMY 273
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 31.5 bits (71), Expect = 0.12
Identities = 7/25 (28%), Positives = 18/25 (72%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKK 302
N+K+++ +K ++ K K+K +K++
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEKER 331
Score = 31.5 bits (71), Expect = 0.12
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K+ +K+++ ++K ++ + K+K EKE
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 31.1 bits (70), Expect = 0.17
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ K+N+K+++ ++K ++ K K+K E
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAE 328
Score = 28.8 bits (64), Expect = 0.87
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K+ +K+++ ++K ++ K K ++E+
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 31.2 bits (71), Expect = 0.13
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
+ + +K K++K K K++ +K K+
Sbjct: 112 QTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 30.8 bits (70), Expect = 0.18
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E +K+ +K++K K K++ +K K+ + +E+
Sbjct: 114 EARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKER 149
Score = 29.7 bits (67), Expect = 0.37
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKE 306
K + +K+ K++K K K++ +K
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLL 135
Score = 28.9 bits (65), Expect = 0.66
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K + + +K+ K++K K KE +K ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 28.9 bits (65), Expect = 0.67
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 284 KNKKKKKKKKKKKKKKKKKKKKETIKKK 311
K + + +K+ K++K K K++ E + K+
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 28.9 bits (65), Expect = 0.75
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEE 313
K + + +K+ K++K K K+E K +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 28.5 bits (64), Expect = 0.87
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ + + K+ K++K K K++ +K KE
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 27.8 bits (62), Expect = 1.4
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKK 310
K + +K+ K++K K K++ ++ +K+
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 27.0 bits (60), Expect = 2.7
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K + + +K+ K++K K + +K KE
Sbjct: 103 TQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 30.8 bits (70), Expect = 0.16
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
+K++KK ++KK+ + +++K ++
Sbjct: 104 QKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 30.8 bits (70), Expect = 0.16
Identities = 8/36 (22%), Positives = 22/36 (61%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E+KK+ ++KK+ + +++K ++ K + + E+
Sbjct: 106 EQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQ 141
Score = 30.1 bits (68), Expect = 0.30
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ +K +KK+ ++KK+ + +++K E
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
Score = 28.9 bits (65), Expect = 0.57
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ +K++KK+ ++KK+ + +K EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.9 bits (65), Expect = 0.69
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 286 KKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+ +K++KK+ ++KK+ + E K +E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.5 bits (64), Expect = 0.91
Identities = 5/28 (17%), Positives = 20/28 (71%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
+ +K++ K+ ++KK+ + +++K +++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.1 bits (63), Expect = 1.3
Identities = 5/28 (17%), Positives = 18/28 (64%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+ K++KK+ ++KK+ + ++++ +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 27.0 bits (60), Expect = 3.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 290 KKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +K++KK+ ++KK+ ++E+ E
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
Score = 26.6 bits (59), Expect = 3.5
Identities = 6/27 (22%), Positives = 20/27 (74%)
Query: 289 KKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +K++KK+ ++KK+ +++++ +E
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEE 128
Score = 26.6 bits (59), Expect = 4.0
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 288 KKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +K++KK+ ++KK+ ++K E++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase
{Clostridium thermocellum [TaxId: 1515]}
Length = 164
Score = 30.0 bits (67), Expect = 0.23
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K N K +K KK+ + K I K+E
Sbjct: 8 TKSWNIKNAQKFKKENESKYNTTI---ITNKDELTFE 41
Score = 28.1 bits (62), Expect = 0.87
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+ +K K+ + K K + E +K
Sbjct: 13 IKNAQKFKKENESKYNTTIITNKDELTFEKVKL 45
Score = 27.0 bits (59), Expect = 2.2
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIK 309
+K KK+N+ K K + +K + I
Sbjct: 17 QKFKKENESKYNTTIITNKDELTFEKVKLIN 47
Score = 27.0 bits (59), Expect = 2.2
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 282 KKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
K +K KK+ + K K E +K
Sbjct: 13 IKNAQKFKKENESKYNTTIITNKDELTFEK 42
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 30.0 bits (67), Expect = 0.38
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK--KEEKEVN 317
+ + K KK +K + + +K+ KE
Sbjct: 231 KKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEAT 274
Score = 28.4 bits (63), Expect = 0.93
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ KK +K + K++ KE + E + +
Sbjct: 244 SVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDN 284
Score = 28.4 bits (63), Expect = 1.1
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 278 NEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
KKK+ + K KK +K + T ++E+NG
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNG 269
Score = 27.7 bits (61), Expect = 1.8
Identities = 5/33 (15%), Positives = 8/33 (24%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKK 311
E K++ K +K K
Sbjct: 188 ELPKEQGKLNEKCASKLYYNNMAICMLPLCHDA 220
Score = 27.3 bits (60), Expect = 2.7
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
+ + +KKK+ K KK + I +
Sbjct: 222 KSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAY 260
Score = 27.3 bits (60), Expect = 2.7
Identities = 3/48 (6%), Positives = 13/48 (27%)
Query: 267 KYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
K+ + + + + K++ K+ + +
Sbjct: 241 KFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNH 288
Score = 26.9 bits (59), Expect = 3.0
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
KK +K + K++ + E E+N
Sbjct: 243 SSVKKTQKIGTENIATAYDILKQELNGFKEATFENEIN 280
Score = 26.5 bits (58), Expect = 4.0
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 5/43 (11%)
Query: 278 NEKKKKKNKKKKKKKK-----KKKKKKKKKKKKETIKKKEEKE 315
+ KK + + K++ K+ E K +
Sbjct: 243 SSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNL 285
Score = 26.1 bits (57), Expect = 5.4
Identities = 10/84 (11%), Positives = 23/84 (27%)
Query: 232 EAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKKKKK 291
++ I F K +F D+T +++ + + K++ K
Sbjct: 136 NESKEHIWRAMMFSLRSRLKEKFVWICKKDVTLKVEPQIYRWIREWGRDYMSELPKEQGK 195
Query: 292 KKKKKKKKKKKKKKETIKKKEEKE 315
+K K +
Sbjct: 196 LNEKCASKLYYNNMAICMLPLCHD 219
Score = 25.8 bits (56), Expect = 6.9
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
N K + +KKK+ + + K
Sbjct: 207 NNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSV 245
Score = 25.4 bits (55), Expect = 9.6
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEVNG 318
+ +KKK+ K ++KK ++
Sbjct: 218 HDACKSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTEN 255
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.4 bits (60), Expect = 0.79
Identities = 7/45 (15%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 267 KYDRLTRPSQGN-EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKK 310
+ R + + K+ K+K ++ ++K+++E ++K
Sbjct: 59 QECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELEK 103
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli
[TaxId: 562]}
Length = 100
Score = 27.1 bits (60), Expect = 0.99
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKE 312
K+ K ++ K+ K K+ + K I
Sbjct: 2 KQSMKAREVKRVALADKYFAKRAELKAIISDVN 34
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 556
Score = 28.8 bits (63), Expect = 0.99
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 8/101 (7%)
Query: 210 HVQQAGGSLYATVDREGIVYTIEAVRKEIGHV-----HKFLASVVGKTEFRPWEVSDLTP 264
V+ G++ + + V + A IGHV ++ V+ F P S
Sbjct: 30 SVKVLDGAVVYEIPMQKYVLMVTAS---IGHVVDLITNRGFHGVLVNGRFVPVYASIKRC 86
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
R + T + K +N + + + +K +
Sbjct: 87 RDCGYQFTEDRESCPKCGSENVDNSRSRIEALRKLAHDAEF 127
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 28.2 bits (62), Expect = 1.1
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 285 NKKKKKKKKKKKKKKKKKKKKE 306
K K++ + + + + +KE
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 27.4 bits (60), Expect = 2.0
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 283 KKNKKKKKKKKKKKKKKKKKKK 304
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 26.3 bits (57), Expect = 4.7
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKK 301
K K+ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 25.5 bits (55), Expect = 8.4
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKK 302
K K + + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 26.7 bits (59), Expect = 1.1
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 277 GNEKKKKKNKKKKKKKKKKKKKKKKKKKKE 306
GN +K + K +K K K + + +
Sbjct: 12 GNAQKSAMARAKNLEKAKAAGKGSQLEANK 41
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 27.7 bits (61), Expect = 1.4
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 276 QGNEKKKKKNK---KKKKKKKKKKKKKKKKKKKETIKKKEEKEVN 317
K + K KKK + + KE I ++ N
Sbjct: 126 LSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQKILFEN 170
Score = 26.2 bits (57), Expect = 4.8
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 275 SQGNEKKKKKNKKKKKKKKKKKKKKKKKKKK 305
S + + K KKK + + K+
Sbjct: 129 SPKSTYSYWASVLNTKASFSKKKSRVQMVKE 159
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 27.2 bits (60), Expect = 1.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ K+N++ ++ ++K K +E K KE KE
Sbjct: 102 MESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15
{Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 26.4 bits (58), Expect = 1.5
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 269 DRLTRPSQGNEKKKKKNKKKKKKKKKKKK 297
R+ + N +K+++ +K +++ + K
Sbjct: 55 SRVLKYVDTNLQKQRELQKANQEQYAEGK 83
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 27.2 bits (60), Expect = 2.0
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 229 YTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDRLTRPSQGNEKKKKKNKKK 288
++A+ K I L + LT + D + Q E+ + +
Sbjct: 74 NALKAIEKAIRDSDLGLNPSNKGDALYI-NIPPLTEERRKDLVRAVRQYAEEGRVAIRNI 132
Query: 289 KKK-KKKKKKKKKKKKKKETIKKKEEKEV 316
+++ K KK K+ E K+ E E+
Sbjct: 133 RREALDKLKKLAKELHLSEDETKRAEAEI 161
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.9 bits (57), Expect = 2.2
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 287 KKKKKKKKKKKKKKKKKKKETI 308
+K KKK ET
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQ 23
Score = 25.5 bits (56), Expect = 3.1
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 290 KKKKKKKKKKKKKKKKETIKK 310
+K KKK T++
Sbjct: 2 SSGSSGRKPPPKKKMTGTLET 22
Score = 25.5 bits (56), Expect = 3.3
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 281 KKKKNKKKKKKKKKKKKK 298
+ +K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.7 bits (54), Expect = 5.3
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 286 KKKKKKKKKKKKKKKKKK 303
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.9 bits (52), Expect = 9.8
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 284 KNKKKKKKKKKKKKKKKK 301
+ +K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1ffgb_ d.58.24.1 (B:) CheY-binding domain of CheA {Escherichia
coli [TaxId: 562]}
Length = 68
Score = 25.4 bits (56), Expect = 2.5
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 197 LSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAV 234
L EE H + V + SL A + + I AV
Sbjct: 16 LLEEELGHLTTLTDVVKGADSLSAILPGDIAEDDITAV 53
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 25.6 bits (56), Expect = 2.7
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 265 RLKYDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKK 302
+ KY L R + + + KKKK+K++K
Sbjct: 49 QAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 25.2 bits (55), Expect = 4.2
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKK 304
+ + + KKKK+K++K
Sbjct: 61 QLHMQLYPGWSARDNYGKKKKRKREK 86
>d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli
[TaxId: 562]}
Length = 130
Score = 25.9 bits (56), Expect = 3.7
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 102 AVTTGVVKSLPDLLAEVEAV 121
T V L E++ +
Sbjct: 105 NWTAVGVTWLAGFDFEIKVI 124
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 26.7 bits (58), Expect = 4.4
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
+ E K K +++ K+ KK + K
Sbjct: 154 RDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSK 192
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 25.7 bits (56), Expect = 5.0
Identities = 5/35 (14%), Positives = 19/35 (54%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
+ +++ ++K + +K+ + + E K+E ++
Sbjct: 103 RNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK 137
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 183
Score = 26.1 bits (57), Expect = 5.2
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 276 QGNEKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEKEV 316
+G E K ++K ++ + +K+ + E + EK++
Sbjct: 119 KGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDL 159
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 25.2 bits (55), Expect = 6.0
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 281 KKKKNKKKKKKKKKKKKKKKKKK 303
K+ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 24.8 bits (54), Expect = 7.4
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKK 301
++ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 24.4 bits (53), Expect = 9.2
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 287 KKKKKKKKKKKKKKKKKKKETIKKKEEKE 315
K+ + + K+ E++E
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 24.8 bits (54), Expect = 6.5
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 279 EKKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEEK 314
E+++++ K K + + KE I K +
Sbjct: 61 EEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKS 96
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 25.0 bits (54), Expect = 6.9
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 268 YDRLTRPSQGNEKKKKKNKKKKKKKKKKKKKKKKKK 303
++ L + + + K KKK + K
Sbjct: 79 WEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAK 114
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 25.8 bits (56), Expect = 7.1
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 280 KKKKKNKKKKKKKKKKKKKKKKKKKKETIKKKEE 313
+K + K K + ++ K E K K E
Sbjct: 1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNE 34
>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId:
9606]}
Length = 92
Score = 24.4 bits (53), Expect = 7.7
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 184 NLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREG 226
L L S G S + + + + V ++G
Sbjct: 49 RLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQG 91
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
halodurans [TaxId: 86665]}
Length = 132
Score = 24.9 bits (54), Expect = 8.8
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 290 KKKKKKKKKKKKKKKKETIKKKEEKE 315
K KK K + ++ K +E E
Sbjct: 80 KDKKAKSTLVRNEETALIWKLVDEAE 105
>d2g3ra2 b.34.9.1 (A:1538-1603) p53-binding protein 1, 53BP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 23.8 bits (51), Expect = 9.9
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 197 LSTEEFTHFGIIRHVQQAGGSLYATVDREG 226
LS +E+ G+++ ++ G LY ++++EG
Sbjct: 10 LSEDEYFSAGVVKGHRKESGELYYSIEKEG 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.126 0.340
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,073,558
Number of extensions: 51259
Number of successful extensions: 1161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 792
Number of HSP's successfully gapped: 219
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.4 bits)