BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15803
(1045 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 575 CC--RVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGISGVEGLQAACAS 632
CC RV P K+++VE + + + +T GDG ND ++KA +G+ + G A AS
Sbjct: 673 CCFARVEPTHKSKIVEYLQ-SFDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTAS 730
Query: 633 DYSIGQFRFLLKLLFV-HGSWNYNRMCLLILYSFYKNI 669
+ + F + V G YN M I Y N+
Sbjct: 731 EMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNV 768
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 575 CC--RVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGISGVEGLQAACAS 632
CC RV P K+++VE + + + +T GDG ND ++KA +G+ + G A AS
Sbjct: 674 CCFARVEPSHKSKIVEYLQ-SYDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTAS 731
Query: 633 DYSIGQFRFLLKLLFV-HGSWNYNRMCLLILYSFYKN----ICLYV 673
+ + F + V G YN M I Y N +C+++
Sbjct: 732 EMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFL 777
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 575 CC--RVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGISGVEGLQAACAS 632
CC RV P K+++VE + + + +T GDG ND ++KA +G+ + G A AS
Sbjct: 675 CCFARVEPSHKSKIVEYLQ-SYDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTAS 732
Query: 633 DYSIGQFRFLLKLLFV-HGSWNYNRMCLLILYSFYKN----ICLYV 673
+ + F + V G YN M I Y N +C+++
Sbjct: 733 EMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFL 778
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 575 CC--RVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGISGVEGLQAACAS 632
CC RV P K+++VE + + + +T GDG ND ++KA +G+ + G A AS
Sbjct: 674 CCFARVEPSHKSKIVEYLQ-SYDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTAS 731
Query: 633 DYSIGQFRFLLKLLFV-HGSWNYNRMCLLILYSFYKN----ICLYV 673
+ + F + V G YN M I Y N +C+++
Sbjct: 732 EMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFL 777
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 543 ALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQKAEVVELVTVNTNSVTLAIG 602
A +I+G+ L EL +E T ++ R SP QK +VE ++ G
Sbjct: 672 ACVINGMQLKDMDPSEL----VEALRTHPEMVFARTSPQQKLVIVESCQ-RLGAIVAVTG 726
Query: 603 DGANDVAMIQKAHVGVGISGVEGLQAA 629
DG ND ++KA +GV + G+ G AA
Sbjct: 727 DGVNDSPALKKADIGVAM-GIAGSDAA 752
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 867 RYVILNVLEFTSDRKRMSVIVRTPQNEIKVFCKGADNMILSRLDSHSKYVDET----KTH 922
+Y +L F K++ +V +PQ E KGA +L ++ +E K
Sbjct: 442 KYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEVDQAYKNK 501
Query: 923 LEQFASSGYRTLCFGVAK 940
+ +FA+ G+R+L GVA+
Sbjct: 502 VAEFATRGFRSL--GVAR 517
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 576 CRVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDY- 634
V P K VVE++ V + GDG ND ++KA G+ + G A A+D
Sbjct: 608 AEVFPQHKYNVVEILQQRGYLVAMT-GDGVNDAPSLKKADTGIAVEGSSD-AARSAADIV 665
Query: 635 ----SIGQFRFLLKLLFVHGSWNYNRMCLLILYSFYKNICLYV-MELWFAI 680
+G LK ++RM ++Y +I L + + LW AI
Sbjct: 666 FLAPGLGAIIDALKT----SRQIFHRMYAYVVYRIALSIHLEIFLGLWIAI 712
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 573 VICCRVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGV--GISGVE 624
++ R SP QK +VE ++ GDG ND ++KA +GV GISG +
Sbjct: 693 IVFARTSPQQKLIIVEGCQ-RQGAIVAVTGDGVNDSPALKKADIGVAMGISGSD 745
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 144 VIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLSTSENEGMCYIETMNLDGETNLKV 203
VIRNG +++ VGD+V+V P DL ++S + C ++ +L GE+ +
Sbjct: 146 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGESEPQT 201
Query: 204 R 204
R
Sbjct: 202 R 202
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 573 VICCRVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGV--GISG 622
++ R SP QK +VE ++ GDG ND +KA +GV GI+G
Sbjct: 663 IVFARTSPQQKLIIVEGCQ-RQGAIVAVTGDGVNDSPASKKADIGVAMGIAG 713
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 144 VIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLSTSENEGMCYIETMNLDGETNLKV 203
VIRNG +++ VGD+V+V P DL ++S + C ++ +L GE+ +
Sbjct: 140 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGESEPQT 195
Query: 204 R 204
R
Sbjct: 196 R 196
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 573 VICCRVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGV--GISG 622
++ R SP QK +VE ++ GDG ND +KA +GV GI+G
Sbjct: 657 IVFARTSPQQKLIIVEGCQ-RQGAIVAVTGDGVNDSPASKKADIGVAMGIAG 707
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 986 VEDKLQEYVPETIAALIKAKISVWVLTGDKKETA 1019
VED ++ PETI L ++ I + +LTGD K TA
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTA 584
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 33.1 bits (74), Expect = 0.94, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 578 VSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGI 620
V P +KAE V+ V VT +GDG ND + +A VG+ I
Sbjct: 190 VLPHEKAEKVK--EVQQKYVTAMVGDGVNDAPALAQADVGIAI 230
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 33.1 bits (74), Expect = 0.94, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 578 VSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGI 620
V P +KAE V+ V VT +GDG ND + +A VG+ I
Sbjct: 190 VLPHEKAEKVK--EVQQKYVTAMVGDGVNDAPALAQADVGIAI 230
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDY 634
T++ GDG ND++M++ A +GV + G A+DY
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM-GQAKEDVKAAADY 241
>pdb|4EZE|A Chain A, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
pdb|4EZE|B Chain B, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
Length = 317
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 12/76 (15%)
Query: 551 LDYALKH--ELRKDFLELCLTCNAVICCRVSPLQKAEVVEL---VTVNTNSVTLAIGDGA 605
LDYA + E+R + LT N + + +K +V+L + + T ++ +A GDGA
Sbjct: 218 LDYAFSNTVEIRDN----VLTDNITLPIMNAANKKQTLVDLAARLNIATENI-IACGDGA 272
Query: 606 NDVAMIQKAHVGVGIS 621
ND+ M++ H G GI+
Sbjct: 273 NDLPMLE--HAGTGIA 286
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 14/118 (11%)
Query: 506 PVVREFLTMLAVCHTVYIELKHRTALASLLGTTNNNYALIIDGLALDYALKHELRKDFLE 565
P++ E ++A H + A+AS T ++Y + + L+LDYA + L + +
Sbjct: 178 PLMPELPELVATLHA----FGWKVAIASGGFTYFSDY--LKEQLSLDYAQSNTL--EIVS 229
Query: 566 LCLTCNAVICCRVSPLQKAEVVELVTVNTNSV----TLAIGDGANDVAMIQKAHVGVG 619
LT V+ VS KA+++ L V T+A+GDGAND+ M+ A +GV
Sbjct: 230 GKLTGQ-VLGEVVSAQTKADIL-LTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLGVA 285
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDY 634
T++ GDG ND++M++ A +GV + G A+DY
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM-GQAKEDVKAAADY 241
>pdb|3M1Y|A Chain A, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|B Chain B, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|C Chain C, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|D Chain D, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
Length = 217
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQ 627
TL +GDGAND++ + AH+ + + E L+
Sbjct: 161 TLVVGDGANDLSXFKHAHIKIAFNAKEVLK 190
>pdb|1RKQ|A Chain A, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
pdb|1RKQ|B Chain B, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
Length = 282
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 599 LAIGDGANDVAMIQKAHVGVGIS 621
+AIGD ND+AMI+ A VGV +
Sbjct: 218 MAIGDQENDIAMIEYAGVGVAVD 240
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 598 TLAIGDGANDVAMIQKA 614
T+A+GDGAND++M +KA
Sbjct: 162 TVAVGDGANDISMFKKA 178
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 598 TLAIGDGANDVAMIQKA 614
T+A+GDGAND++M +KA
Sbjct: 162 TVAVGDGANDISMFKKA 178
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 594 TNSVTLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDY 634
T +AIGDG ND++MI+ A +GV + + A+DY
Sbjct: 212 TREEVIAIGDGYNDLSMIKFAGMGVAMGNAQE-PVKKAADY 251
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDYSIGQFRFLLKLLFVHG 650
T+A+GDGAND+ M+ A +G+ + L+ + S +L +LF+ G
Sbjct: 342 TVAVGDGANDIDMLAAAGLGIAFNAKPALREVADASLS---HPYLDTVLFLLG 391
>pdb|2M0N|A Chain A, Solution Structure Of A Duf3349 Annotated Protein From
Mycobacterium Abscessus, Mab_3403c. Seattle Structural
Genomics Center For Infectious Disease Target
Myaba.17112.A.A2
Length = 112
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 205 QAPNETSSLTDPSSLAQLKGQIECDHPNRFIYDFT 239
Q + LTDP S AQ+ G + D +FI D T
Sbjct: 45 QVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVT 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,243,772
Number of Sequences: 62578
Number of extensions: 1253519
Number of successful extensions: 2653
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2609
Number of HSP's gapped (non-prelim): 77
length of query: 1045
length of database: 14,973,337
effective HSP length: 109
effective length of query: 936
effective length of database: 8,152,335
effective search space: 7630585560
effective search space used: 7630585560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)