RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15803
(1045 letters)
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 535 bits (1380), Expect = e-173
Identities = 220/472 (46%), Positives = 296/472 (62%), Gaps = 42/472 (8%)
Query: 56 FVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILI 115
F NKIST KY+++TF P LFEQF+R++N++FL +ALLQQ+P +SPT R T+++PL +
Sbjct: 1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILSPTYRGTSIVPLAFV 60
Query: 116 MVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVE-QWKDLKVGDIVKVYNNSFFPG 174
++V+ IKE IEDI+R D E+N+R +V+ +VE WKDL+VGDIVKV + P
Sbjct: 61 LIVTAIKEAIEDIRRRRRDKEVNNRLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPA 120
Query: 175 DLMVLSTSENEGMCYIETMNLDGETNLKVRQAPNETSSLTDPSSLAQLKGQIECDHPNRF 234
DL++LS+SE +G+CY+ET NLDGETNLK+RQA ET + D + G+IEC+ PN
Sbjct: 121 DLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNAS 180
Query: 235 IYDFTGNFKERGRTAVPLGPERILLRGSMLRNTAWIIGIVVYTGPDSKLMKNATSAPLKR 294
+Y F GN G PL P+ ILLRG LRNT W+IG+VVYTG D+KLM+NAT AP KR
Sbjct: 181 LYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRNATQAPSKR 240
Query: 295 STVDKITNTQTIMLFVLLLALCFISAAASTIWTLGRNAGDWYLLSRNPS------FHSNL 348
S ++K N I+LF LL LC IS+ + IW WY+ +
Sbjct: 241 SRLEKELNFLIIILFCLLFVLCLISSVGAGIWNDAHGKDLWYIRLDVSERNAAANGFFSF 300
Query: 349 LTFIILYNNLIPISLQVTLEIVRFIQATFINNDMDMYYEPTDTPAAARTSNLNEELGMVK 408
LTF+IL+++LIPISL V+LE+V+ +QA FIN+D+ MY+E TDTPA+ RTSNLNEELG V+
Sbjct: 301 LTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEELGQVE 360
Query: 409 FVFSDKTGTLTRNVMEFKICSVAG-----------NILVPNFNSNNVQEQS--------- 448
++FSDKTGTLT+N+MEFK CS+AG + + S E S
Sbjct: 361 YIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDGIRERLGSYVENENSMLVESKGFT 420
Query: 449 -------RMIARNPSIEPVVREFLTMLAVCHTVCSVAGNILVPNFNSNNVKE 493
++ N + EF LA+CHTV VP FN + +E
Sbjct: 421 FVDPRLVDLLKTNKPNAKRINEFFLALALCHTV--------VPEFNDDGPEE 464
Score = 357 bits (917), Expect = e-106
Identities = 131/252 (51%), Positives = 175/252 (69%), Gaps = 2/252 (0%)
Query: 539 NNNYALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQKAEVVELVTVNTNSVT 598
+ N AL+IDG +L YAL EL K+FL+L L C AVICCRVSP QKA+VV LV +T T
Sbjct: 712 SGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTT 771
Query: 599 LAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDYSIGQFRFLLKLLFVHGSWNYNRMC 658
LAIGDGANDV+MIQ+A VGVGISG EG+QA ASD++IGQFRFL KLL VHG W+Y R+
Sbjct: 772 LAIGDGANDVSMIQEADVGVGISGKEGMQAVMASDFAIGQFRFLTKLLLVHGRWSYKRIS 831
Query: 659 LLILYSFYKNICLYVMELWFAIYSGWSGQVLFERWTIGLYNVLFTAFPPLAIGILDQVCS 718
+ILY FYKN+ +++ W++ Y+G+SGQ L+E W + LYNV FTA P +++G+ DQ S
Sbjct: 832 KMILYFFYKNLIFAIIQFWYSFYNGFSGQTLYEGWYMVLYNVFFTALPVISLGVFDQDVS 891
Query: 719 ARTRLKYPILYS--QTANTFNVKIFWIWIGNALFHSMLMFWIPMLIYGQGTIWANGKDGG 776
A L+YP LY Q F+ K FW W+ + ++ S+++F+ PM Y G ++G
Sbjct: 892 ASLSLRYPQLYREGQKGQGFSTKTFWGWMLDGIYQSLVIFFFPMFAYILGDFVSSGSVDD 951
Query: 777 YLVLGNIVYTVT 788
+ +G IV+T
Sbjct: 952 FSSVGVIVFTAL 963
Score = 304 bits (780), Expect = 2e-87
Identities = 128/249 (51%), Positives = 165/249 (66%), Gaps = 6/249 (2%)
Query: 802 PVVREFLTMLAVCHTVIPEMKD---GVLQYHASSPDEKALILGAKAFGYVFTSKHYKEIE 858
+ EF LA+CHTV+PE D + Y A+SPDE AL+ A+ G+VF + K I
Sbjct: 438 KRINEFFLALALCHTVVPEFNDDGPEEITYQAASPDEAALVKAARDVGFVFFERTPKSIS 497
Query: 859 IT--ALGETQRYVILNVLEFTSDRKRMSVIVRTPQNEIKVFCKGADNMILSRLDSH-SKY 915
+ GET+ Y ILNVLEF SDRKRMSVIVR P IK+ CKGAD +I RL S ++
Sbjct: 498 LLIEMHGETKEYEILNVLEFNSDRKRMSVIVRNPDGRIKLLCKGADTVIFKRLSSGGNQV 557
Query: 916 VDETKTHLEQFASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEMIE 975
+ETK HLE +AS G RTLC ++ EE+Y+ W+ Y A+T++T+REE++ V E IE
Sbjct: 558 NEETKEHLENYASEGLRTLCIAYRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIE 617
Query: 976 TKLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINIGYSSRLVGQDTPL 1035
L LLGA+A+EDKLQE VPETI L +A I +WVLTGDK ETAINIGYS RL+ ++
Sbjct: 618 KDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQ 677
Query: 1036 LDLDGYSLD 1044
+ + SLD
Sbjct: 678 IVITSDSLD 686
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 332 bits (853), Expect = 7e-97
Identities = 164/414 (39%), Positives = 249/414 (60%), Gaps = 27/414 (6%)
Query: 42 DHRVININAPQSC----KFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQI 97
D R++ +N P+ +F GN I TAKYS+ +F P LFEQF R + I+FL IA+L Q+
Sbjct: 69 DARLVYLNDPEKSNERFEFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQL 128
Query: 98 PDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKD 157
P ++ GR +++PL +++V+ +K+ ED +RH +D N+R V+ + ++WKD
Sbjct: 129 PQLAVFGRGASILPLAFVLLVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWKD 188
Query: 158 LKVGDIVKVYNNSFFPGDLMVLSTSENEGMCYIETMNLDGETNLKVRQAPNETSSLTDPS 217
++VG+I+K+ N P D+++LSTS+ G+ Y++T+NLDGE+NLK R A ET L+
Sbjct: 189 IRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQET--LSKIP 246
Query: 218 SLAQLKGQIECDHPNRFIYDFTGNFKERGRTAVPLGPERILLRGSMLRNTAWIIGIVVYT 277
++ G I+C+ PNR IY F N + G+ + LGP I+LRG L+NTAW IG+ VY
Sbjct: 247 EKEKINGLIKCEKPNRNIYGFQANMEVDGKR-LSLGPSNIILRGCELKNTAWAIGVAVYC 305
Query: 278 GPDSKLMKNATSAPLKRSTVDKITNTQTIMLFVLLLALCFISAAASTIWTLGRNAG--DW 335
G ++K M N + AP KRS ++ N + I+L + L+ALC I + + +W L R+ D
Sbjct: 306 GRETKAMLNNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVW-LRRHRDELDT 364
Query: 336 YLLSRNPSFHSN--------------LLTF---IILYNNLIPISLQVTLEIVRFIQATFI 378
R F TF +I++ +IPISL +++E+VR QA F+
Sbjct: 365 IPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFM 424
Query: 379 NNDMDMYYEPTDTPAAARTSNLNEELGMVKFVFSDKTGTLTRNVMEFKICSVAG 432
D MY E +++ R N+NE+LG +K+VFSDKTGTLT N MEF+ S+ G
Sbjct: 425 IRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWG 478
Score = 250 bits (639), Expect = 1e-68
Identities = 113/247 (45%), Positives = 160/247 (64%), Gaps = 4/247 (1%)
Query: 524 ELKHRTALASLLGTTNNNYALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQK 583
+ T +S ++ ALIIDG +L Y L EL + +L C+ V+CCRV+PLQK
Sbjct: 802 GISQNTGGSS--AAASDPVALIIDGTSLVYVLDSELEEQLFQLASKCSVVLCCRVAPLQK 859
Query: 584 AEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDYSIGQFRFLL 643
A +V LV T+ +TLAIGDGANDV+MIQ A VGVGISG EG QA ASD+++GQFRFL+
Sbjct: 860 AGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLV 919
Query: 644 KLLFVHGSWNYNRMCLLILYSFYKNICLYVMELWFAIYSGWSGQVLFERWTIGLYNVLFT 703
LL VHG WNY RM +ILY+FY+N ++ W+ +++ ++ W+ LY+V++T
Sbjct: 920 PLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTCFTLTTAINEWSSVLYSVIYT 979
Query: 704 AFPPLAIGILDQVCSARTRLKYPILY--SQTANTFNVKIFWIWIGNALFHSMLMFWIPML 761
A P + +GILD+ S RT LKYP LY Q +N K+FW+ + + L+ S ++F++P+
Sbjct: 980 ALPTIVVGILDKDLSRRTLLKYPQLYGAGQRQEAYNSKLFWLTMIDTLWQSAVVFFVPLF 1039
Query: 762 IYGQGTI 768
Y TI
Sbjct: 1040 AYWASTI 1046
Score = 206 bits (526), Expect = 2e-54
Identities = 97/235 (41%), Positives = 145/235 (61%), Gaps = 9/235 (3%)
Query: 804 VREFLTMLAVCHTVIPEMKDG-------VLQYHASSPDEKALILGAKAFGYVFTSKHYKE 856
V +F LA C+T++P + D ++ Y SPDE+AL+ A A+G++ +
Sbjct: 532 VHDFFLALAACNTIVPIVVDDTSDPTVKLMDYQGESPDEQALVYAAAAYGFMLIERTSGH 591
Query: 857 IEITALGETQRYVILNVLEFTSDRKRMSVIVRTPQNEIKVFCKGADNMILSRLD--SHSK 914
I I GE QR+ +L + EF SDRKRMSVI+ P +KVF KGAD + S +D +
Sbjct: 592 IVIDIHGERQRFNVLGLHEFDSDRKRMSVILGCPDKTVKVFVKGADTSMFSVIDRSLNMN 651
Query: 915 YVDETKTHLEQFASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEMI 974
+ T+ HL ++S G RTL G+ ++ + +++ W ++ A+T++ R + +V +
Sbjct: 652 VIRATEAHLHTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNV 711
Query: 975 ETKLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINIGYSSRLV 1029
E L +LGASA+EDKLQ+ VPE I +L A I VWVLTGDK+ETAI+IGYSS+L+
Sbjct: 712 ENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLL 766
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 205 bits (523), Expect = 1e-56
Identities = 133/610 (21%), Positives = 219/610 (35%), Gaps = 111/610 (18%)
Query: 106 YTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVK 165
+ + L+ +++V K EDI R L+D +N R V+RNG + KDL GD+V
Sbjct: 1 FILFLVLVFVLLVVKQKLKAEDILRSLSDRLVNTRPATVLRNGWKEIPA-KDLVPGDVVL 59
Query: 166 VYNNSFFPGDLMVLSTSENEGMCYIETMNLDGETNLKVRQAPNETSSLTDPSSLAQLKGQ 225
V + P D ++LS G C+++ NL GE+N ++ A ET G
Sbjct: 60 VKSGETVPADGVLLS-----GSCFVDESNLTGESNPVLKTALKETQ-----------SGT 103
Query: 226 IECDHPNRFIYDFTGNFKERGRTAVPLGPERILLRGSMLRNTAWIIGIVVYTGPDSKLMK 285
I D Y F G V + P IL T I +VV TG +++
Sbjct: 104 ITGDLVFAGTYVFGGTLI------VVVTPTGIL-------TTVGRIAVVVKTGFETR--- 147
Query: 286 NATSAPLKRSTVDKITNTQTIMLFVLLLALCFISAAASTIWTLGRNAGDWYLLSRNPSFH 345
T KR ++ +LF+LLLAL W S
Sbjct: 148 --TPLQSKRDRLENFI----FILFLLLLALAVFLYLFIRGWD-------------PNSIF 188
Query: 346 SNLLTFIILYNNLIPISLQVTLEIVRFIQATFINNDMDMYYEPTDTPAAARTSNLNEELG 405
LL +I+ ++P +L + + + D + + R N EELG
Sbjct: 189 KALLRALIVLVIVVPPALPAAVTVALAVG------DARLAKKG----ILVRNLNALEELG 238
Query: 406 MVKFVFSDKTGTLTRNVMEFKICSVAGNILVPNFNSNNVQEQSRMIARNPSIEPVVREFL 465
V ++ SDKTGTLT+N M + + G +N S +P+ + L
Sbjct: 239 KVDYLCSDKTGTLTKNKMTLQGVYIDGG------KEDNSSSLVACDNNYLSGDPMEKALL 292
Query: 466 TMLAVCHTVCSVAGNILVPNFNSNNVKEQSRMIA-----RNPSIEPVVR---EFLTMLAV 517
+ + GN + + ++ + S V+ EF+
Sbjct: 293 K--SAELVGKADKGNKEYKILDVFPFSSVLKRMSVIVETPDGSDLLFVKGAPEFILERCN 350
Query: 518 -CHTVYIELKHRTALASLLGTTNNNYALIIDGL-ALDYALKHELRKDFLELC-------- 567
Y+EL + + L GL + L+ + K+ +E
Sbjct: 351 NYEEKYLELARQGLRVLAFASKELEDDLEFLGLITFEDPLRPDA-KETIEELKAAGIKVV 409
Query: 568 -LT-------------CNAVICCRVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQK 613
+T + RVSP QK ++VE + + GDG ND ++K
Sbjct: 410 MITGDNVLTAKAIAKELGIDVFARVSPEQKLQIVEALQ-KKGHIVAMTGDGVNDAPALKK 468
Query: 614 AHVGVGISGVEGLQAACASDYSIGQFRF-LLKLLFVHGSWNYNRMCLLILYSFYKNICLY 672
A VG+ + A A+D + + G ++ + I ++ N+ L
Sbjct: 469 ADVGIAMG------AKAAADIVLLDDDLSAIVKAVKEGRKIFSNIKSNIFWAIAYNLILI 522
Query: 673 VMELWFAIYS 682
+ L +
Sbjct: 523 PLALLLIVII 532
Score = 116 bits (293), Expect = 4e-27
Identities = 54/218 (24%), Positives = 73/218 (33%), Gaps = 53/218 (24%)
Query: 813 VCHTVIPEMKDGVLQYHASSPDEKALILGAKAFGYVFTSKHYKEIEITALGETQRYVILN 872
+ Y + P EKAL+ A+ G + Y IL+
Sbjct: 266 GKEDNSSSLVACDNNYLSGDPMEKALLKSAELVGKAD-------------KGNKEYKILD 312
Query: 873 VLEFTSDRKRMSVIVRTPQNEIKVFCKGADNMILSRLDSHSKYVDETKTHLEQFASSGYR 932
V F+S KRMSVIV TP +F KGA IL R + + + A G R
Sbjct: 313 VFPFSSVLKRMSVIVETPDGSDLLFVKGAPEFILER-------CNNYEEKYLELARQGLR 365
Query: 933 TLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEMIETKLHLLGASAVEDKLQE 992
L F ++ ++ L LG ED L+
Sbjct: 366 VLAFASKELEDD---------------------------------LEFLGLITFEDPLRP 392
Query: 993 YVPETIAALIKAKISVWVLTGDKKETAINIGYSSRLVG 1030
ETI L A I V ++TGD TA I +
Sbjct: 393 DAKETIEELKAAGIKVVMITGDNVLTAKAIAKELGIDV 430
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 180 bits (458), Expect = 2e-46
Identities = 82/417 (19%), Positives = 142/417 (34%), Gaps = 73/417 (17%)
Query: 59 NKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIM-V 117
+ + FL + + + + L + D G +I L++++
Sbjct: 58 GPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWVDAGVDAIVILLVVVINA 117
Query: 118 VSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLM 177
+ G + K A +++ V+R+G +L GDIV + P DL
Sbjct: 118 LLGFVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLR 177
Query: 178 VLSTSENEGMCYIETMNLDGETNLKVRQAPNETSSLTDPSSLAQLKGQIECDHPNRFIYD 237
+L +S+ ++ L GE+ +QA P + + ++ D+
Sbjct: 178 LLESSDL----EVDESALTGESLPVEKQA--------LPLTKSDAPLGLDRDN------- 218
Query: 238 FTGNFKERGRTAVPLGPERILLRGSMLRNTAWIIGIVVYTGPDSKLMKNATSAPLKRSTV 297
+L G+ + + GIVV TG +++ K A P K+
Sbjct: 219 -------------------MLFSGTTVVSG-RAKGIVVATGFETEFGKIARLLPTKKEVK 258
Query: 298 DKITNTQTIMLFVLLLALCFISAAASTIWTLGRNAGDWYLLSRNPSFHSNLLTFIILYNN 357
+ + L LL L + A + L R LT + L
Sbjct: 259 TPL-QRKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLES---------FLTALALAVA 308
Query: 358 LIPISLQVTLEIVRFIQATFINNDMDMYYEPTDTPAAARTSNLNEELGMVKFVFSDKTGT 417
+P L + I + A + D + R+ N E LG V + SDKTGT
Sbjct: 309 AVPEGLPAVVTIALALGAQRMAKDNAIV----------RSLNAIETLGSVDVICSDKTGT 358
Query: 418 LTRNVMEFKICSVAGNILVPNFNSNNVQEQSRMIARNPSIEPVVREFLTMLAVCHTV 474
LT+N M K + N + S P + FL A+C++V
Sbjct: 359 LTQNKMTVKKIYI-----------NGGGKDIDDKDLKDS--PALLRFLLAAALCNSV 402
Score = 165 bits (420), Expect = 9e-42
Identities = 77/268 (28%), Positives = 114/268 (42%), Gaps = 41/268 (15%)
Query: 784 VYTVTEQSRMIARNPSIEPVVREFLTMLAVCHTVIPEMKDGVLQYHASSPDEKALILGAK 843
+Y + ++ P + FL A+C++V PE Y A P E AL+ A+
Sbjct: 369 IYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNGW---YQAGDPTEGALVEFAE 425
Query: 844 AFGYVFTSKHYKEIEITALGETQRYVILNVLEFTSDRKRMSVIVRTPQNEIKVFCKGADN 903
G+ G Y IL + F S+RKRMSVIV+T + + +F KGA
Sbjct: 426 KLGFSLDLS----------GLEVEYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPE 475
Query: 904 MILSRLDS-------HSKYVDETKTHLEQFASSGYRTLCFGVAKIPEEKYKNWSALYKNA 956
+IL R S + + + +++ AS G R L YK K+
Sbjct: 476 VILERCKSIGELEPLTEEGLRTLEEAVKELASEGLRVLAVA--------YKKLDRAEKD- 526
Query: 957 ATSMTNREERIAEVCEMIETKLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKK 1016
+ + IE+ L LG + +ED +E V E I L +A I VW++TGD
Sbjct: 527 ------------DEVDEIESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHV 574
Query: 1017 ETAINIGYSSRLVGQDTPLLDLDGYSLD 1044
ETAI I + + L +DG LD
Sbjct: 575 ETAIAIAKECGIEAEAESALVIDGAELD 602
Score = 158 bits (402), Expect = 1e-39
Identities = 69/248 (27%), Positives = 104/248 (41%), Gaps = 16/248 (6%)
Query: 543 ALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQKAEVVELVTVNTNSVTLAIG 602
AL+IDG LD EL + EL + RVSP QKA +VE + + V G
Sbjct: 593 ALVIDGAELDALSDEELAELVEELS------VFARVSPEQKARIVEAL-QKSGHVVAMTG 645
Query: 603 DGANDVAMIQKAHVGVGISGVEGLQAA-CASD-YSIGQFRFLLKLLFVHGSWNYNRMCLL 660
DG ND ++ A VG+ + G EG AA A+D + + L V G Y +
Sbjct: 646 DGVNDAPALKAADVGIAMGG-EGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKF 704
Query: 661 ILYSFYKNICLYVMELWFAIYSGWSGQVLFERWTIGLYNVLFTAFPPLAIGILDQVCSAR 720
ILY KN+ + L +++++ + + + N+L + P LA+G+ D
Sbjct: 705 ILYLLSKNVGEVLTLLIYSLFNLF--FLPLTPLQLLWINLLTDSLPALALGVED---PES 759
Query: 721 TRLKYPILYSQTANTFNVKIFWIWIGNALFHSMLMFWIPMLIYGQGTIWANGKDGGYLVL 780
+K P FN KIFW +I S ++F + L+Y G I + L
Sbjct: 760 DVMKRP-PRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQAL 818
Query: 781 GNIVYTVT 788
Sbjct: 819 LQTTAFTV 826
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade but
the substrate of their pumping activity has yet to be
determined. This clade has been designated type V in.
Length = 1054
Score = 77.0 bits (190), Expect = 4e-14
Identities = 53/231 (22%), Positives = 85/231 (36%), Gaps = 37/231 (16%)
Query: 802 PVVREFLTMLAVCHTVIPEMK-DGVLQYHASSPDEKALILGAKAFGYVFTSKHYKEIE-- 858
LA CH++ K +G L P +K + +A G+
Sbjct: 488 LKPSITHKALATCHSL---TKLEGKL---VGDPLDKKM---FEATGWTLEEDDESAEPTS 538
Query: 859 ----ITALGETQRYVILNVLEFTSDRKRMSVIVRTPQNEIK--VFCKGADNMILSRLDSH 912
+ Q I+ +F+S +RMSVIV T +E F KGA I S
Sbjct: 539 ILAVVRTDDPPQELSIIRRFQFSSALQRMSVIVSTN-DERSPDAFVKGAPETIQSLCSPE 597
Query: 913 SKYVDETKTHLEQFASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCE 972
+ D + L+ + GYR L ++P+ +R+
Sbjct: 598 TVPSDYQEV-LKSYTREGYRVLALAYKELPK---LTLQKAQD------LSRDA------- 640
Query: 973 MIETKLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINIG 1023
+E+ L LG E+ L+ E I L +A I ++TGD TA+++
Sbjct: 641 -VESNLTFLGFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVA 690
Score = 58.9 bits (143), Expect = 1e-08
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 540 NNYALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQKAEVVELVTVNTNSVTL 599
+ Y L + G A L+ + L L + R++P QK +VEL+ +
Sbjct: 750 SRYHLAMSGKAF-AVLQAHSPELLLRLLSHTT--VFARMAPDQKETLVELLQ-KLDYTVG 805
Query: 600 AIGDGANDVAMIQKAHVGVGISGVEGLQAACASDY 634
GDGAND +++A VG+ +S E A+ A+ +
Sbjct: 806 MCGDGANDCGALKQADVGISLSEAE---ASVAAPF 837
Score = 42.4 bits (100), Expect = 0.002
Identities = 77/385 (20%), Positives = 137/385 (35%), Gaps = 76/385 (19%)
Query: 106 YTTLIPLILI-MVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIV 164
Y+ I + + + +I + ++R L D +SV VIRNG +W + ++V
Sbjct: 195 YSLCIVFMSSTSISLSVYQIRKQMQR-LRDMVHKPQSVIVIRNG-----KWVTIASDELV 248
Query: 165 KVYNNSFFPGDLMVLSTSENEGMCYIETMNLDGETNLKVRQAPNETSSLTDPSSLAQLKG 224
PGD++ + E E +++ L G + NE S LT S+ LK
Sbjct: 249 --------PGDIVSIPRPE-EKTMPCDSVLLSGSCIV------NE-SMLTG-ESVPVLKF 291
Query: 225 QIEC---DHPNRFIYDFTGNFKERGRTAVPLGPERILLRGSMLRNTAWIIGIVVYTGPDS 281
I D + F+Y+ + G T + L+ + IVV TG +
Sbjct: 292 PIPDNGDDDEDLFLYETSKKHVLFGGTKI--------LQIRPYPGDTGCLAIVVRTGFST 343
Query: 282 ---KLMKNATSAPLKRSTVDKITNTQTIMLFVLLLALCFISAAASTIWTLGRNAGDWYLL 338
+L+++ P R + F+L LA+ + TI L+
Sbjct: 344 SKGQLVRSILY-PKPRVFK----FYKDSFKFILFLAVLALIGFIYTI---------IELI 389
Query: 339 SRNPSFHSNLLTFIILYNNLIPISLQVTLEI-VRFIQATFINNDMDMYYEPTDTPAAART 397
+L + + ++P +L L I + A + P A
Sbjct: 390 KDGRPLGKIILRSLDIITIVVPPALPAELSIGINNSLARLKKKGI-FCTSPFRINFA--- 445
Query: 398 SNLNEELGMVKFVFSDKTGTLTRNVMEFKICSVAGNILVPNFNSNNVQEQSRMIARNPSI 457
G + DKTGTLT + ++ + N ++ + + PSI
Sbjct: 446 -------GKIDVCCFDKTGTLTEDGLDLRGVQGLSG------NQEFLKIVTEDSSLKPSI 492
Query: 458 EPVVREFLTMLAVCHTVCSVAGNIL 482
LA CH++ + G ++
Sbjct: 493 ------THKALATCHSLTKLEGKLV 511
>gnl|CDD|222006 pfam13246, Hydrolase_like2, Putative hydrolase of sodium-potassium
ATPase alpha subunit. This is a putative hydrolase of
the sodium-potassium ATPase alpha subunit.
Length = 91
Score = 61.5 bits (150), Expect = 1e-11
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 812 AVCHT--VIPEMKDGVLQYHASSPDEKALILGAKAFGYVFTSKHYKEIEITALGETQRYV 869
A+C+ + + P E AL++ A+ G +E+ RY
Sbjct: 1 ALCNDAKFGENEEKNGGEIIGD-PTESALLVFAEKLGI-----DVEELR-------ARYP 47
Query: 870 ILNVLEFTSDRKRMSVIVRTPQNEIK-VFCKGADNMILSR 908
+ + F S+RKRMS + + ++ +F KGA IL R
Sbjct: 48 RVAEIPFNSERKRMSTVHKLEDDDGYRLFVKGAPERILER 87
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type IIA
SERCA calcium pump. A separate analysis divides Type IIA
into sub-types (SERCA and PMR1) which are modelled by
TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 68.6 bits (168), Expect = 1e-11
Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 46/231 (19%)
Query: 804 VREFLTMLAVCHTVIPEMKD-GVLQYHASSPDEKALILGAKAFGYVFTSKHYKEIEITAL 862
VR L ++ E+ D G + S E AL+ + Y+E+
Sbjct: 419 VRNILVEGISLNSSSEEVVDRGGKRAFIGSKTECALLDFGLLLL-----RDYQEVR---- 469
Query: 863 GETQRYVILNVLEFTSDRKRMSVIVRTPQNEIKVFCKGADNMIL----SRLDSHSKYV-- 916
++ + F S+RK MSV+V+ + + F KGA ++L RLDS+ +
Sbjct: 470 ---AEEKVVKIYPFNSERKFMSVVVKHSGGKYREFRKGASEIVLKPCRKRLDSNGEATPI 526
Query: 917 -----DETKTHLEQFASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVC 971
D +E AS RT+C A E
Sbjct: 527 SDDDKDRCADVIEPLASDALRTICL-------------------AYRDFAPEEFPRK--- 564
Query: 972 EMIETKLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINI 1022
+ L L+G ++D L+ V E + +A I+V ++TGD +TA I
Sbjct: 565 DYPNKGLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAI 615
Score = 34.0 bits (78), Expect = 0.46
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 402 EELGMVKFVFSDKTGTLTRNVMEFKICSVAGNILVPNFNSNNVQEQSRMI-----ARNPS 456
E +G + SDKTGTLT+NVM + NV + R I + N S
Sbjct: 373 ETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNILVEGISLNSS 432
Query: 457 IEPVV 461
E VV
Sbjct: 433 SEEVV 437
Score = 31.7 bits (72), Expect = 2.6
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 94 LQQIP---DVSPTGRY---TTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRN 147
L + + TG L+ +IL+++V+ + + ++++ + E + + + VIR
Sbjct: 115 LPEPGEGKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRG 174
Query: 148 GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLSTSENEGMCYIETMNLDGETN 200
G D+ VGDIV + P D + +S I+ ++ GE++
Sbjct: 175 GQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLS----LEIDESSITGESD 223
Score = 31.3 bits (71), Expect = 3.3
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 571 NAVICCRVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVG--VGISGVEGLQA 628
+ R SPL K +V ++ + V GDG ND ++ A VG +GISG E A
Sbjct: 648 KLRVLARSSPLDKQLLVLMLK-DMGEVVAVTGDGTNDAPALKLADVGFSMGISGTE--VA 704
Query: 629 ACASD 633
ASD
Sbjct: 705 KEASD 709
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for translocating
calcium ions across the endoplasmic reticulum membrane of
eukaryotes , and is of particular importance in the
sarcoplasmic reticulum of skeletal and cardiac muscle in
vertebrates. These pumps transfer Ca2+ from the cytoplasm
to the lumen of the endoplasmic reticulum. In humans and
mice, at least, there are multiple isoforms of the SERCA
pump with overlapping but not redundant functions.
Defects in SERCA isoforms are associated with diseases in
humans. The calcium P-type ATPases have been
characterized as Type IIA based on a phylogenetic
analysis which distinguishes this group from the Type IIB
PMCA calcium pump modelled by TIGR01517. A separate
analysis divides Type IIA into sub-types, SERCA and PMR1
the latter of which is modelled by TIGR01522 [Transport
and binding proteins, Cations and iron carrying
compounds].
Length = 917
Score = 61.0 bits (148), Expect = 3e-09
Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 32/187 (17%)
Query: 874 LEFTSDRKRMSVIVRTPQNEIKVFCKGADNMILSRLDSHSKYVDETK------------T 921
LEF+ DRK MSV+ P K+F KGA +L R +H D +
Sbjct: 426 LEFSRDRKSMSVLC-KPSTGNKLFVKGAPEGVLERC-THILNGDGRAVPLTDKMKNTILS 483
Query: 922 HLEQFASS-GYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEMIETKLHL 980
+++ ++ R L IP+ + + + IE+ L
Sbjct: 484 VIKEMGTTKALRCLALAFKDIPDPR-----EEDLLSDPANFEA----------IESDLTF 528
Query: 981 LGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINIGYSSRLVGQDTPLLD--L 1038
+G + D + V + I A I V ++TGD KETA I + D +
Sbjct: 529 IGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSF 588
Query: 1039 DGYSLDT 1045
G D
Sbjct: 589 TGREFDE 595
Score = 40.9 bits (96), Expect = 0.004
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 571 NAVICCRVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGI-SGVEGLQAA 629
+AV+ RV P K+E+VEL+ + GDG ND ++KA +G+ + SG E A
Sbjct: 607 SAVLFSRVEPSHKSELVELLQ-EQGEIVAMTGDGVNDAPALKKADIGIAMGSGTE--VAK 663
Query: 630 CASDYSIGQFRFLLKLLFVH-GSWNYNRMCLLILYSFYKNI 669
ASD + F + V G YN M I Y NI
Sbjct: 664 EASDMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNI 704
Score = 30.9 bits (70), Expect = 4.8
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 402 EELGMVKFVFSDKTGTLTRNVM 423
E LG + SDKTGTLT N M
Sbjct: 284 ETLGCTTVICSDKTGTLTTNQM 305
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is modelled
by TIGR01116.
Length = 884
Score = 53.7 bits (129), Expect = 5e-07
Identities = 45/224 (20%), Positives = 79/224 (35%), Gaps = 42/224 (18%)
Query: 802 PVVREFLTMLAVCHTVIPEMKDGVLQYHASSPDEKALILGAKAFGYVFTSKHYKEIEITA 861
V L +C+ + L +P + ALI FG + Y +
Sbjct: 379 VAVSRILEAGNLCNNAKFRNEADTL---LGNPTDVALIELLMKFGLDDLRETYIRVA--- 432
Query: 862 LGETQRYVILNVLEFTSDRKRMSVIVRTPQNEIK-VFCKGADNMILSRLDSHSKYVDETK 920
+ F+S+RK M+V Q+ + F KGA +L + K + K
Sbjct: 433 -----------EVPFSSERKWMAVKCVHRQDRSEMCFMKGAYEQVLKYCTYYQK--KDGK 479
Query: 921 THLEQFASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEMIET-KLH 979
T + +++ + A M + R+ E +L
Sbjct: 480 TL-----------------TLTQQQRDV----IQEEAAEMASAGLRVIAFASGPEKGQLT 518
Query: 980 LLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINIG 1023
LG + D + V E + LI + + ++TGD +ETA++I
Sbjct: 519 FLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIA 562
Score = 34.0 bits (78), Expect = 0.45
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 402 EELGMVKFVFSDKTGTLTRNVMEF-KICSVAGNILVPNFNSNNVQEQSRMIARNPSI--E 458
E LG V + SDKTGTLT+N M KI + G + N S N + +
Sbjct: 319 ETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYT 378
Query: 459 PVVREFLTMLAVCH 472
V L +C+
Sbjct: 379 VAVSRILEAGNLCN 392
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 48.3 bits (116), Expect = 5e-06
Identities = 40/263 (15%), Positives = 84/263 (31%), Gaps = 69/263 (26%)
Query: 112 LILIMVVSGIKEIIEDIKRHLADGEIN----HRSVDVIRNGMIYVEQWKDLKVGDIVKVY 167
++L+++++ + E ++ + A + + VIR+G +L VGDIV +
Sbjct: 2 ILLLVLINALLEAYQEYRARKALKALKKLLPPTAATVIRDGKEEEIPADELVVGDIVLLK 61
Query: 168 NNSFFPGDLMVLSTSENEGMCYIETMNLDGETNLKVRQAPNETSSLTDPSSLAQLKGQIE 227
P D ++ EG ++ L GE+
Sbjct: 62 PGDRVPADGRII-----EGSLEVDESALTGES---------------------------- 88
Query: 228 CDHPNRFIYDFTGNFKERGRTAVPLGPERILLRGSMLRNTAWIIGIVVYTGPDSKLMKNA 287
V + G+++ + + IV TG D++L K A
Sbjct: 89 --------------------LPVEKSRGDTVFAGTVVLS-GELKVIVTATGEDTELGKIA 127
Query: 288 TSAPLKRSTVDKITNTQTIMLFVLLLALCFISAAASTIWTLGRNAGDWYLLSRNPSFHSN 347
T Q ++ + + + + A A ++ + R F
Sbjct: 128 RLV---EEAKSAKTPLQRLLDKLAKILVPIVLALAILVFLIW--------FFRGGDFLEA 176
Query: 348 LLTFIILYNNLIPISLQVTLEIV 370
LL + + P +L + + +
Sbjct: 177 LLRALAVLVAACPEALPLAVPLA 199
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species and
best described in Salmonella typhimurium, which contains
two isoforms. These transporters are active in low
external Mg2+ concentrations and pump the ion into the
cytoplasm. The magnesium ATPases have been classified as
type IIIB by a phylogenetic analysis [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 867
Score = 43.3 bits (102), Expect = 8e-04
Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 32/158 (20%)
Query: 867 RYVILNVLEFTSDRKRMSVIVRTPQNEIKVFCKGADNMILS-----RLDSHSKYVDETKT 921
R+ ++ + F DR+R+SV+V ++ CKGA +L+ R + E++
Sbjct: 405 RWKKVDEIPFDFDRRRLSVVVENRAEVTRLICKGAVEEMLTVCTHKRFGGAVVTLSESEK 464
Query: 922 HL-----EQFASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEMIET 976
+ G R + + + + + E
Sbjct: 465 SELQDMTAEMNRQGIRVIAVATKTLK-------------VGEADFTKTD---------EE 502
Query: 977 KLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGD 1014
+L + G D +E E IAAL K I+V VLTGD
Sbjct: 503 QLIIEGFLGFLDPPKESTKEAIAALFKNGINVKVLTGD 540
Score = 36.8 bits (85), Expect = 0.071
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 24/106 (22%)
Query: 517 VCHTVYIELKHRTALASLLGTTNNNYALIIDGLALDYALKHELRKDFLELCLTCNAVICC 576
+C V I+ A LLG I+ L+ D L ELRK I
Sbjct: 548 ICQEVGID-----ANDFLLGAD-------IEELS-DEELARELRK----------YHIFA 584
Query: 577 RVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGISG 622
R++P+QK+ ++ L+ ++V +GDG ND ++KA VG+ +
Sbjct: 585 RLTPMQKSRIIGLLKKAGHTVGF-LGDGINDAPALRKADVGISVDT 629
>gnl|CDD|182988 PRK11133, serB, phosphoserine phosphatase; Provisional.
Length = 322
Score = 41.1 bits (97), Expect = 0.002
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
T+AIGDGAND+ MI+ A +G+
Sbjct: 267 TVAIGDGANDLPMIKAAGLGI 287
>gnl|CDD|232927 TIGR00338, serB, phosphoserine phosphatase SerB. Phosphoserine
phosphatase catalyzes the reaction 3-phospho-serine +
H2O = L-serine + phosphate. It catalyzes the last of
three steps in the biosynthesis of serine from
D-3-phosphoglycerate. Note that this enzyme acts on free
phosphoserine, not on phosphoserine residues of
phosphoproteins [Amino acid biosynthesis, Serine
family].
Length = 219
Score = 40.0 bits (94), Expect = 0.003
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQ 627
T+A+GDGAND++MI+ A +G+ + LQ
Sbjct: 171 TVAVGDGANDLSMIKAAGLGIAFNAKPKLQ 200
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 41.5 bits (97), Expect = 0.003
Identities = 41/160 (25%), Positives = 57/160 (35%), Gaps = 26/160 (16%)
Query: 876 FTSDRKRMSVIVRTPQNEI-KVFCKGADNMILSRLDSHSKYVDETKTHLEQ--------- 925
F S+ KRM+ I E ++ KGA I+ S + + LE
Sbjct: 533 FDSEIKRMASIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIAN 592
Query: 926 ---FASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEMIETKLHLLG 982
A+ G R L F +K N KN NR E+ L LG
Sbjct: 593 MESLAAEGLRVLAFASKSF--DKADNNDDQLKNET---LNR--------ATAESDLEFLG 639
Query: 983 ASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINI 1022
+ D + + +A I+V +LTGD ETA I
Sbjct: 640 LIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAI 679
Score = 31.1 bits (70), Expect = 4.5
Identities = 67/329 (20%), Positives = 113/329 (34%), Gaps = 58/329 (17%)
Query: 144 VIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST---SENEGMCYIETMNLDGETN 200
VIRNG DL GDI + P DL ++ T +E + E++ + + +
Sbjct: 122 VIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVIKDAH 181
Query: 201 LKVRQAPNETSSLTDPSSLAQLKGQIECDHPNRFIYDFTGNFKERGRTAVPLG------- 253
+ E + + D +LA + T E G A L
Sbjct: 182 ATFGK--EEDTPIGDRINLAFSSSAVTKGRAKGICIA-TALNSEIGAIAAGLQGDGGLFQ 238
Query: 254 -PERILLRGSMLRNTAWIIGIVVYTGPDSKLMKNATSAPLKRSTVDKITNTQTIMLFVLL 312
PE+ N + TG + PL R K++ I+ + +
Sbjct: 239 RPEKDDPNKRRKLNKWILKVTKKVTG---AFLGLNVGTPLHR----KLSKLAVILFCIAI 291
Query: 313 LALCFISAAASTIWTLGRNAGDWYLLSRNPSFHSNLLTFIILYNNLIPISLQVTLEIVRF 372
+ + AA + + + + ++ I L ++IP SL L I
Sbjct: 292 IFAIIVMAAHK------------FDVDKEVAIYA-----ICLAISIIPESLIAVLSITMA 334
Query: 373 I-QATFINNDMDMYYEPTDTPAAARTSNLNEELGMVKFVFSDKTGTLTRNVMEFKICSVA 431
+ A ++ R + E LG V + SDKTGT+T+ M +A
Sbjct: 335 MGAANMSKRNV-----------IVRKLDALEALGAVNDICSDKTGTITQGKM------IA 377
Query: 432 GNILVPNFNSNNVQEQSRMIARNPSIEPV 460
I +P F + ++ A NP+ V
Sbjct: 378 RQIWIPRFGTISIDNSDD--AFNPNEGNV 404
Score = 30.4 bits (68), Expect = 6.8
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 544 LIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQKAEVVELVTVNTNSVTLAIGD 603
+++ G D AL E D LCL + R +P K +++E + + GD
Sbjct: 701 MVMTGSQFD-ALSDEEVDDLKALCL-----VIARCAPQTKVKMIEALHRRKAFCAMT-GD 753
Query: 604 GANDVAMIQKAHVGV--GISG 622
G ND ++ A+VG+ GI+G
Sbjct: 754 GVNDSPSLKMANVGIAMGING 774
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase primarily
responsible for translocating copper ions accross
biological membranes. These transporters are found in
prokaryotes and eukaryotes. This model encompasses those
species which pump copper ions out of cells or organelles
(efflux pumps such as CopA of Escherichia coli ) as well
as those which pump the ion into cells or organelles
either for the purpose of supporting life in extremely
low-copper environments (for example CopA of Enterococcus
hirae ) or for the specific delivery of copper to a
biological complex for which it is a necessary component
(for example FixI of Bradyrhizobium japonicum, or CtaA
and PacS of Synechocystis). The substrate specificity of
these transporters may, to a varying degree, include
silver ions (for example, CopA from Archaeoglobus
fulgidus). Copper transporters from this family are well
known as the genes which are mutated in two human
disorders of copper metabolism, Wilson's and Menkes'
diseases. The sequences contributing to the seed of this
model are all experimentally characterized. The copper
P-type ATPases have been characterized as Type IB based
on a phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases as
IB1 (and the cadmium-ATPases as IB2). Several sequences
which have not been characterized experimentally fall
just below the cutoffs for both of these models. A
sequence from Enterococcus faecalis scores very high
against this model, but yet is annotated as an "H+/K+
exchanging ATPase". BLAST of this sequence does not hit
anything else annotated in this way. This error may come
from the characterization paper published in 1987.
Accession GP|7415611 from Saccharomyces cerevisiae
appears to be mis-annotated as a cadmium resistance
protein. Accession OMNI|NTL01HS00542 from Halobacterium
which scores above trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 39.6 bits (93), Expect = 0.010
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 979 HLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETA 1019
L G A+ D+L+ E I AL + I +LTGD ++TA
Sbjct: 404 ELAGVLALADQLKPEAKEVIQALKRRGIEPVMLTGDNRKTA 444
Score = 33.0 bits (76), Expect = 1.0
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 578 VSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGISG 622
V P KA +++ + V +GDG ND + +A VG+ I
Sbjct: 460 VLPDDKAALIKKL-QEKGKVVAMVGDGINDAPALAQADVGIAIGA 503
>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
metabolism].
Length = 212
Score = 38.0 bits (89), Expect = 0.011
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDYSIGQFRFLLKLLFVHG 650
T+A GD AND+ M++ A + + ++ L+A L +L++ G
Sbjct: 163 TVAYGDSANDLPMLEAAGLPIAVNPKPKLRALADVRIW---PIDLRAVLYLLG 212
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA; Provisional.
Length = 902
Score = 39.3 bits (92), Expect = 0.012
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 36/167 (21%)
Query: 860 TALGETQRYVILNVLEFTSDRKRMSVIVRTPQNEIKVFCKGADNMILS---RLDSHSKYV 916
+A R+ ++ + F +R+RMSV+V ++ CKGA IL+ ++ + + V
Sbjct: 433 SARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLICKGALEEILNVCSQVRHNGEIV 492
Query: 917 DETKTHLEQ-------FASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREE--RI 967
L + G R VA A + RE +
Sbjct: 493 PLDDIMLRRIKRVTDTLNRQGLRV----VAV---------------ATKYLPAREGDYQR 533
Query: 968 AEVCEMIETKLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGD 1014
A+ ++I L G A D +E + AL + ++V +LTGD
Sbjct: 534 ADESDLI-----LEGYIAFLDPPKETTAPALKALKASGVTVKILTGD 575
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 38.1 bits (89), Expect = 0.027
Identities = 43/179 (24%), Positives = 66/179 (36%), Gaps = 38/179 (21%)
Query: 867 RYVILNVLEFTSDRKRMSVIVRTPQN-EIKVFCKGADNMILSRLDSHSKYVDETKTHLEQ 925
Y +L + F KR V P+ + KGA +IL D+ + ++ + +++
Sbjct: 352 GYKVLEFVPFDPVDKRTEATVEDPETGKRFKVTKGAPQVILDLCDNKKEIEEKVEEKVDE 411
Query: 926 FASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEMIETKLHLLGASA 985
AS GYR L GVA+ EE W H LG
Sbjct: 412 LASRGYRAL--GVARTDEE--GRW-----------------------------HFLGLLP 438
Query: 986 VEDKLQEYVPETIAALIKAKISVWVLTGDK----KETAINIGYSSRLVGQDTPLLDLDG 1040
+ D + ETI + V ++TGD KETA +G + + D L +
Sbjct: 439 LFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDNR 497
Score = 38.1 bits (89), Expect = 0.031
Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 32/159 (20%)
Query: 272 GIVVYTGPDSKLMKNATSAPLKRSTVDKITNTQT----IMLFVLLLALCFISAAASTIWT 327
+V TG ++ K A L +ST + Q I LF+++L + +
Sbjct: 171 AVVTATGMNTFFGKAAA---LVQSTETGSGHLQKILSKIGLFLIVLIGVLV---LIELVV 224
Query: 328 LGRNAGDWYLLSRNPSFHSNLLTFIILYNNLIPISLQVTLEIVRFIQATFINNDMDMYYE 387
L R SF L ++L IPI++ L + + A +
Sbjct: 225 L--------FFGRGESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKK------ 270
Query: 388 PTDTPAAARTSNLN--EELGMVKFVFSDKTGTLTRNVME 424
A + L EEL + + SDKTGTLT N +
Sbjct: 271 ------KAIVTRLTAIEELAGMDILCSDKTGTLTLNKLS 303
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 37.6 bits (88), Expect = 0.041
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 979 HLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETA 1019
L+G A+ D+L+ E IAAL I V +LTGD + TA
Sbjct: 527 KLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTA 567
Score = 30.3 bits (69), Expect = 6.6
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 578 VSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGISG 622
+ P KAE+V + +GDG ND + A VG+ +
Sbjct: 583 LLPEDKAEIVRELQ-AEGRKVAMVGDGINDAPALAAADVGIAMGS 626
Score = 30.3 bits (69), Expect = 6.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 402 EELGMVKFVFSDKTGTLTRNVME 424
E L V V DKTGTLT E
Sbjct: 400 ERLAKVDTVVFDKTGTLTEGKPE 422
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 37.3 bits (87), Expect = 0.051
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 37/192 (19%)
Query: 866 QRYVILNVLEFTSDRKRMSVIVRTPQNEIKVFCKGA-DNM--ILSRLDSHSKYV---DET 919
Y ++ L F R+R+SV+V Q + + CKGA + M + + + +
Sbjct: 437 AGYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKGAVEEMLAVATHVRDGDTVRPLDEAR 496
Query: 920 KTHL----EQFASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEM-I 974
+ L E + + G+R L +IP + + A+ ++ I
Sbjct: 497 RERLLALAEAYNADGFRVLLVATREIPG---------------GESRAQYSTADERDLVI 541
Query: 975 ETKLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINIGYSSRLVGQD-- 1032
L L D +E IAAL + ++V VLTGD I R VG +
Sbjct: 542 RGFLTFL------DPPKESAAPAIAALRENGVAVKVLTGDNPIVTAKI---CREVGLEPG 592
Query: 1033 TPLLDLDGYSLD 1044
PLL + ++D
Sbjct: 593 EPLLGTEIEAMD 604
Score = 36.2 bits (84), Expect = 0.12
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 574 ICCRVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGV 618
+ +++PLQK+ V++ + N ++V +GDG ND ++ A VG+
Sbjct: 617 VFAKLTPLQKSRVLKALQANGHTVGF-LGDGINDAPALRDADVGI 660
>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of
haloacid dehalogenase superfamily. This subfamily of
sequences falls within the Class-IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase superfamily of
aspartate-nucleophile hydrolases. The use of the name
"Cof" as an identifier here is arbitrary and refers to
the E. coli Cof protein. This subfamily is notable for
the large number of recent paralogs in many species.
Listeria, for instance, has 12, Clostridium, Lactococcus
and Streptococcus pneumoniae have 8 each, Enterococcus
and Salmonella have 7 each, and Bacillus subtilus,
Mycoplasma, Staphylococcus and E. coli have 6 each. This
high degree of gene duplication is limited to the gamma
proteobacteria and low-GC gram positive lineages. The
profusion of genes in this subfamily is not coupled with
a high degree of divergence, so it is impossible to
determine an accurate phylogeny at the equivalog level.
Considering the relationship of this subfamily to the
other known members of the HAD-IIB subfamily
(TIGR01484), sucrose and trehalose phosphatases and
phosphomannomutase, it seems a reasonable hypothesis
that these enzymes act on phosphorylated sugars.
Possibly the diversification of genes in this subfamily
represents the diverse sugars and polysaccharides that
various bacteria find in their biological niches. The
members of this subfamily are restricted almost
exclusively to bacteria (one sequences from S. pombe
scores above trusted, while another is between trusted
and noise). It is notable that no archaea are found in
this group, the closest relations to the archaea found
here being two Deinococcus sequences [Unknown function,
Enzymes of unknown specificity].
Length = 256
Score = 35.3 bits (82), Expect = 0.11
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+A GDG ND+ M++ A GV
Sbjct: 207 VIAFGDGMNDIEMLEAAGYGV 227
>gnl|CDD|233434 TIGR01484, HAD-SF-IIB, HAD-superfamily hydrolase, subfamily IIB.
This subfamily falls within the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
The Class II subfamilies are characterized by a domain
that is located between the second and third conserved
catalytic motifs of the superfamily domain. The IIB
subfamily is distinguished from the IIA subfamily
(TIGR01460) by homology and the predicted secondary
structure of this domain by PSI-PRED. The IIB
subfamily's Class II domain has the following predicted
structure: Helix-Sheet-Sheet-(Helix or
Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB
subfamily consists of Trehalose-6-phosphatase
(TIGR00685), plant and cyanobacterial
Sucrose-phosphatase and a closely related group of
bacterial and archaeal sequences, eukaryotic
phosphomannomutase (pfam03332), a large subfamily
("Cof-like hydrolases", TIGR00099) containing many
closely related bacterial sequences, a hypothetical
equivalog containing the E. coli YedP protein, as well
as two small clusters containing OMNI|TC0379 and
OMNI|SA2196 whose relationship to the other groups is
unclear [Unknown function, Enzymes of unknown
specificity].
Length = 204
Score = 35.0 bits (81), Expect = 0.11
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 5/95 (5%)
Query: 529 TALASLLGTTNNNYALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQKAEVVE 588
A+A L + K LE + + + K ++
Sbjct: 112 IAVAIHYVGAELGQELDSK--MRERLEKIGRNDLELEAIYVGKTDLEVLPAGVDKGSALQ 169
Query: 589 LV--TVN-TNSVTLAIGDGANDVAMIQKAHVGVGI 620
+ +N LA GD ND M + A + V +
Sbjct: 170 ALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVAV 204
>gnl|CDD|219777 pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This
family contains haloacid dehalogenase-like hydrolase
enzymes.
Length = 254
Score = 34.5 bits (80), Expect = 0.18
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGIS---GVEGLQAAC 630
+A GDG ND+ M++ G+G++ ++AA
Sbjct: 205 VIAFGDGENDIEMLE--LAGLGVAMGNASPEVKAAA 238
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 35.3 bits (82), Expect = 0.19
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 979 HLLGASAVEDKLQEYVPETIAALIKA-KISVWVLTGDKKETA 1019
LLG A+ D+L+ E IAAL +A I + +LTGD + A
Sbjct: 374 ELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAA 415
>gnl|CDD|234684 PRK00192, PRK00192, mannosyl-3-phosphoglycerate phosphatase;
Reviewed.
Length = 273
Score = 34.5 bits (80), Expect = 0.25
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 597 VTLAIGDGANDVAMIQKAHVGVGISGVEG 625
T+A+GD ND+ M++ A + V + G +G
Sbjct: 209 ETIALGDSPNDLPMLEAADIAVVVPGPDG 237
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 34.0 bits (79), Expect = 0.27
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 546 IDGLALDYALKHEL------RKDFLE-LCLTCNAVICCRVSPLQ-----KAEVVELVTVN 593
ID LAL Y K + +K+ LE + A I + L AE+VE +
Sbjct: 102 IDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIG 161
Query: 594 TNSVTLAIGDGANDVAMI 611
+T G A I
Sbjct: 162 EEKLTFIEGCKGGKAATI 179
>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General
function prediction only].
Length = 264
Score = 33.5 bits (77), Expect = 0.45
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+A GD ND+ M++ A +GV
Sbjct: 208 VIAFGDSTNDIEMLEVAGLGV 228
>gnl|CDD|215479 PLN02887, PLN02887, hydrolase family protein.
Length = 580
Score = 33.7 bits (77), Expect = 0.53
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 599 LAIGDGANDVAMIQKAHVGVGIS-GVEGLQA 628
+AIGDG ND+ M+Q A +GV +S G E +A
Sbjct: 527 MAIGDGENDIEMLQLASLGVALSNGAEKTKA 557
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of Pseudomonas sp.
(S)-2-haloacid dehalogenase 1. The rest of the fold is
composed of the core alpha/beta domain. Those members
with the characteristic DxD triad at the N-terminus are
probably phosphatidylglycerolphosphate (PGP)
phosphatases involved in cardiolipin biosynthesis in the
mitochondria.
Length = 187
Score = 32.6 bits (74), Expect = 0.56
Identities = 36/213 (16%), Positives = 60/213 (28%), Gaps = 30/213 (14%)
Query: 407 VKFVFSDKTGTLTRNVM----EFKICSVAGNILVPNFNSNNVQEQSRMIARNPSIEPVVR 462
+K V D GTLT + A + V + E R + ++
Sbjct: 1 IKAVVFDLDGTLTDGEPVVPEAEALLEAAAALGVAIVIA--AGENLTKEGREELVRRLLL 58
Query: 463 EFLTMLAVCHTVCSVAGNILVPNFNSNNVKEQSRMIARNPSIEPVVREFLTMLAVCHTVY 522
L + + ++ +IA + P RE L L
Sbjct: 59 RALAGEELLEELLRAGATVVA-----VLDLVVLGLIALTDPLYPGAREALKELK------ 107
Query: 523 IELKHRTALASLLGTTNNNYALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQ 582
E + A+ T +N + + D L V + P
Sbjct: 108 -EAGIKLAIL-----TGDNRLTA------NAIARLLGLFDALVSADLYGLVGVGKPDPKI 155
Query: 583 KAEVVELVTVNTNSVTLAIGDGANDVAMIQKAH 615
+E + V L +GDG ND+ + A
Sbjct: 156 FELALEELGVKP-EEVLMVGDGVNDIPAAKAAG 187
Score = 31.1 bits (70), Expect = 2.3
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 938 VAKIPEEKYKNWSALYKNAATSMTNREERIAEVCE------MIETKLHLLGASAVEDKLQ 991
V E K E + E + L +LG A+ D L
Sbjct: 37 VIAAGENLTKEGREELVRRLLLRALAGEELLEELLRAGATVVAVLDLVVLGLIALTDPLY 96
Query: 992 EYVPETIAALIKAKISVWVLTGDKKETAINI 1022
E + L +A I + +LTGD + TA I
Sbjct: 97 PGAREALKELKEAGIKLAILTGDNRLTANAI 127
>gnl|CDD|100066 cd02637, R3H_PARN, R3H domain of Poly(A)-specific ribonuclease
(PARN). PARN is a poly(A)-specific 3' exonuclease from
the RNase D family that, in Xenopus, deadenylates a
specific class of maternal mRNAs which results in their
translational repression. The name of the R3H domain
comes from the characteristic spacing of the most
conserved arginine and histidine residues. The function
of the domain is predicted to bind ssDNA or ssRNA.
Length = 65
Score = 30.0 bits (68), Expect = 0.81
Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 967 IAEVCEMIET-------KLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETA 1019
I EV E IE L L + + KL E I V L +KKE
Sbjct: 1 IDEVIERIEAFLESEEDDLELEPCNGFQRKLIYQTLEQK---YPKGIHVETLETEKKERL 57
Query: 1020 INIG 1023
I I
Sbjct: 58 IVIE 61
>gnl|CDD|223620 COG0546, Gph, Predicted phosphatases [General function prediction
only].
Length = 220
Score = 32.4 bits (74), Expect = 0.82
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 598 TLAIGDGANDVAMIQKA---HVGV--GISGVEGLQAACASDYSIGQFRFLLKLLFVH 649
L +GD ND+ + A VGV G + E L A A D I LL LL
Sbjct: 165 ALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGA-DVVIDSLAELLALLAES 220
>gnl|CDD|182509 PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.
Length = 270
Score = 32.7 bits (75), Expect = 0.90
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 599 LAIGDGANDVAMIQKAHVGVGI-SGVEGLQAA 629
+AIGD ND+AMI+ A VGV + + + ++
Sbjct: 216 MAIGDQENDIAMIEYAGVGVAMGNAIPSVKEV 247
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 32.6 bits (75), Expect = 1.1
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 546 IDGLALDYALKHEL------RKDFLE-LCLTCNAVICCRVSPLQ-----KAEVVELVTVN 593
ID LAL + K+ + +K+ LE L A + + L+ A VE +
Sbjct: 253 IDDLALHFLAKNGILALRRVKKEDLERLAKATGATVVSSLDDLEPDELGSAGKVEEREIG 312
Query: 594 TNSVTLAIGDGAN 606
+ T I +
Sbjct: 313 EDKTTF-IEGCLS 324
>gnl|CDD|237437 PRK13582, thrH, phosphoserine phosphatase; Provisional.
Length = 205
Score = 31.8 bits (73), Expect = 1.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 595 NSVTLAIGDGANDVAMIQKAHVGV 618
+A GD ND M+ +A G+
Sbjct: 144 GYRVIAAGDSYNDTTMLGEADAGI 167
>gnl|CDD|226572 COG4087, COG4087, Soluble P-type ATPase [General function
prediction only].
Length = 152
Score = 31.4 bits (71), Expect = 1.3
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 595 NSVTLAIGDGANDVAMIQKAHVGVGISGVEGL--QAACASDYSIGQFRFLLKLL 646
+ +G+GAND+ +++A +G+ EG+ + +D + + +L LL
Sbjct: 93 YEKVVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEILDLL 146
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 32.6 bits (75), Expect = 1.4
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 157 DLKVGDIVKVYNNSFFPGDLMVLSTSENEGMCYIETMNLDGETNLKVRQAPNETSSLT 214
+LK GDIV V P D V+ EG+ ++ + GE+ +R++ + SS+T
Sbjct: 122 ELKKGDIVLVEAGEIIPSDGEVI-----EGVASVDESAITGESAPVIRESGGDFSSVT 174
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 30.8 bits (70), Expect = 1.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 596 SVTLAIGDGANDVAMIQKA 614
L +GD ND+ M + A
Sbjct: 114 EEVLMVGDSLNDIEMAKAA 132
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 32.1 bits (73), Expect = 1.8
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 577 RVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGV--GISG 622
R SP QK +VE ++ GDG ND ++KA +GV GI+G
Sbjct: 666 RTSPQQKLIIVEGCQ-RQGAIVAVTGDGVNDSPALKKADIGVAMGIAG 712
Score = 30.9 bits (70), Expect = 5.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 402 EELGMVKFVFSDKTGTLTRNVM 423
E LG + SDKTGTLT+N M
Sbjct: 339 ETLGSTSTICSDKTGTLTQNRM 360
>gnl|CDD|164765 MTH00222, ATP9, ATP synthase F0 subunit 9; Provisional.
Length = 77
Score = 29.4 bits (66), Expect = 1.9
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 311 LLLALCFISAAASTIWTLGRNAGDWYLL-------SRNPSFHSNLLTFIIL 354
+L A F+ A A+TI G AG + +RNPS L T+ IL
Sbjct: 4 ILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAIL 54
>gnl|CDD|172498 PRK13997, PRK13997, potassium-transporting ATPase subunit C;
Provisional.
Length = 193
Score = 31.1 bits (70), Expect = 2.3
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 793 MIARNPSIEPVVREFLTMLAVCHTVIPEMKDGVLQY----HASSP---DEKALILGAKAF 845
M + + P++R T L +C V P + G+ Q +A ++K ++G+K
Sbjct: 1 MAKKQSILSPIIRITFTFLVLCGLVYPLIVTGIAQAVMKDNADGSLIYNDKNEVIGSKLI 60
Query: 846 GYVFTSKHY 854
G FT Y
Sbjct: 61 GQNFTDPRY 69
>gnl|CDD|187657 cd08954, KR_1_FAS_SDR_x, beta-ketoacyl reductase (KR) domain of
fatty acid synthase (FAS), subgroup 1, complex (x) SDRs.
NADP-dependent KR domain of the multidomain type I FAS,
a complex SDR family. This subfamily also includes
proteins identified as polyketide synthase (PKS), a
protein with related modular protein architecture and
similar function. It includes the KR domains of
mammalian and chicken FAS, and Dictyostelium discoideum
putative polyketide synthases (PKSs). These KR domains
contain two subdomains, each of which is related to SDR
Rossmann fold domains. However, while the C-terminal
subdomain has an active site similar to the other SDRs
and a NADP-binding capability, the N-terminal SDR-like
subdomain is truncated and lacks these functions,
serving a supportive structural role. In some instances,
such as porcine FAS, an enoyl reductase (a Rossman fold
NAD-binding domain of the medium-chain
dehydrogenase/reductase, MDR family) module is inserted
between the sub-domains. Fatty acid synthesis occurs via
the stepwise elongation of a chain (which is attached to
acyl carrier protein, ACP) with 2-carbon units.
Eukaryotic systems consists of large, multifunctional
synthases (type I) while bacterial, type II systems, use
single function proteins. Fungal fatty acid synthesis
uses a dodecamer of 6 alpha and 6 beta subunits. In
mammalian type FAS cycles, ketoacyl synthase forms
acetoacetyl-ACP which is reduced by the NADP-dependent
beta-ketoacyl reductase (KR), forming
beta-hydroxyacyl-ACP, which is in turn dehydrated by
dehydratase to a beta-enoyl intermediate, which is
reduced by NADP-dependent beta-enoyl reductase (ER);
this KR and ER are members of the SDR family. This KR
subfamily has an active site tetrad with a similar 3D
orientation compared to archetypical SDRs, but the
active site Lys and Asn residue positions are swapped.
The characteristic NADP-binding is typical of the
multidomain complex SDRs, with a GGXGXXG NADP binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
prostaglandin dehydrogenase (PGDH) numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107,
PGDH numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type KRs have
a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 452
Score = 31.3 bits (71), Expect = 2.8
Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 8/133 (6%)
Query: 43 HRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQI-PDVS 101
++++ S K G K S L +F F ++ +L+ + S
Sbjct: 64 NQLLKSTQEVSIKLSGVKKSFYGSVLCRIQSPTDKSEFLPVEEQTFEYVEILKSLLATAS 123
Query: 102 PTGRYTTLIPLILIMVVSGIKEIIEDIKRHLA----DGEINHRSVDVIRNGMIYVEQWKD 157
T V+ ++ E+ + L +N + +IRNG +Y E+
Sbjct: 124 CKPVLLTADGCESSGVIGAVRYFREEPQLKLIRCLFVSNLNSQKEPIIRNGKVYYER--- 180
Query: 158 LKVGDIVKVYNNS 170
+K +K S
Sbjct: 181 VKKNSNIKNVYKS 193
>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan putative glycerol kinases (GK), which may be
coded by the GK-like gene, GK5. Sequence comparison
shows members of this group are homologs of bacterial
GKs, and they retain all functionally important
residues. However, GK-like proteins in this family do
not have detectable GK activity. The reason remains
unclear. It has been suggested tha the conserved
catalytic residues might facilitate them performing a
distinct function. GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 504
Score = 31.1 bits (71), Expect = 3.1
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 95 QQIPDVSPTGRYTTLIPLIL-IMVVSGIKEIIEDIKRHLAD----GEINHRSVDVI---R 146
+I + P Y + P L +V IKE ++D G R +
Sbjct: 29 DKIELLYPEPGYVEIDPDKLWTQIVGVIKEAVKDANLTAKQIAGLGISTQRGSFLTWNKS 88
Query: 147 NGMIYVE--QWKDLKVGDIVKVYNNSF 171
G Y WKDL+ ++VK +NNS
Sbjct: 89 TGKPYHNFITWKDLRADELVKEWNNSL 115
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 31.1 bits (71), Expect = 3.5
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 402 EELGMVKFVFSDKTGTLTRNVMEFKICSVA 431
E L +K V DKTGTLT K+ V
Sbjct: 241 EALAKIKTVAFDKTGTLTTG--RPKVVDVV 268
Score = 30.0 bits (68), Expect = 7.7
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 980 LLGASAVEDKLQEYVPETIAALIKAKIS-VWVLTGDKKETAINIGYSSRLVGQD 1032
LG + D+ + E IA L I V +LTGD++ A + R +G D
Sbjct: 353 YLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVA---RELGID 403
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 30.0 bits (68), Expect = 9.1
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 16/44 (36%)
Query: 391 TPAAARTSNLN---------------EELGMVKFVFSDKTGTLT 419
TPAA TS L E+LG V V DKTGTLT
Sbjct: 406 TPAAI-TSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLT 448
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.406
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 53,233,105
Number of extensions: 5349996
Number of successful extensions: 4999
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4938
Number of HSP's successfully gapped: 95
Length of query: 1045
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 938
Effective length of database: 6,191,724
Effective search space: 5807837112
Effective search space used: 5807837112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.3 bits)