RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15803
(1045 letters)
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 79.3 bits (196), Expect = 4e-15
Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 25/158 (15%)
Query: 866 QRYVILNVLEFTSDRKRMSVIVRTPQNEIKVFCKGADNMILSRLDSHSKYVDETKTHLEQ 925
++ L F KR ++ KGA IL + + + + +++
Sbjct: 390 AGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAKASNDLSKKVLSIIDK 449
Query: 926 FASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEMIETKLHLLGASA 985
+A G R+L VA + K E +G
Sbjct: 450 YAERGLRSL--AVA------RQVVPEKTK-----------------ESPGAPWEFVGLLP 484
Query: 986 VEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINIG 1023
+ D + ETI + ++V ++TGD+ G
Sbjct: 485 LFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETG 522
Score = 38.8 bits (91), Expect = 0.009
Identities = 63/384 (16%), Positives = 115/384 (29%), Gaps = 111/384 (28%)
Query: 59 NKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDV--SPTGRYTTLIPLILIM 116
NK+ K S + F + A++ + + +I ++
Sbjct: 48 NKLEEKKESKLLKF----LGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLL 103
Query: 117 VVSGIKEIIEDIKRHLADGEIN------HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNS 170
V++ IE+ A V+R+G ++ L GDIV +
Sbjct: 104 VINSTISFIEENN---AGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGD 160
Query: 171 FFPGDLMVLSTSENEGMCYIETMNLDGETNLKVRQAPNETSSLTDPSSLAQLKGQIECDH 230
P D +L LKV Q S+LT SL K H
Sbjct: 161 IIPADARLLEGD-----------------PLKVDQ-----SALTG-ESLPVTK------H 191
Query: 231 PNRFIYDFTGNFKERGRTAVPLGPERILLRGSMLRNTAWIIGIVVYTGPDSKLMKNATSA 290
P + + F+G+ ++G I +V+ TG + K A
Sbjct: 192 PGQEV--FSGSTCKQGE----------------------IEAVVIATGVHTFFGKAAHLV 227
Query: 291 PLKRST------VDKITNTQTIMLFVLLLALCFISAAASTIWTLGRNAGDWYLLSRNPSF 344
+ I N + + ++ + + +
Sbjct: 228 DSTNQVGHFQKVLTAIGNFCICSIAIGMVIEIIV-----------------MYPIQRRKY 270
Query: 345 HSNLLTFIILYNNLIPISLQVTLEIVRFIQATFINNDMDMYYEPTDTPAAAR---TSNLN 401
+ ++L IPI++ L + I + + + + T +
Sbjct: 271 RDGIDNLLVLLIGGIPIAMPTVLSVTMAIGS------HRL---------SQQGAITKRMT 315
Query: 402 --EELGMVKFVFSDKTGTLTRNVM 423
EE+ + + SDKTGTLT N +
Sbjct: 316 AIEEMAGMDVLCSDKTGTLTLNKL 339
Score = 33.8 bits (78), Expect = 0.32
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 576 CRVSPLQKAEVVELVTVNTNSV--TLAIGDGANDVAMIQKAHVGVGISG 622
V P K E+V+ + + V T GDG ND ++KA +G+ ++
Sbjct: 562 AGVFPEHKYEIVKKLQERKHIVGMT---GDGVNDAPALKKADIGIAVAD 607
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein,
P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 75.8 bits (187), Expect = 5e-14
Identities = 41/219 (18%), Positives = 68/219 (31%), Gaps = 56/219 (25%)
Query: 833 PDEKALILGAKAFGYVFTSKHYKEIEITALGETQRYVILNVLEFTSDRKRMSVIVRTPQN 892
+KA + K + A +Y +L F K++ +V +PQ
Sbjct: 421 AIDKAFLKSLKYYPR-------------AKSVLSKYKVLQFHPFDPVSKKVVAVVESPQG 467
Query: 893 EIKVFCKGADNMILSRLDSHSKYVDETKTHL----EQFASSGYRTLCFGVAKIPEEKYKN 948
E KGA +L ++ +E +FA+ G+R+L GVA K
Sbjct: 468 ERITCVKGAPLFVLKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSL--GVA------RKR 519
Query: 949 WSALYKNAATSMTNREERIAEVCEMIETKLHLLGASAVEDKLQEYVPETIAALIKAKISV 1008
E +LG D + +T+ +S+
Sbjct: 520 G-------------------------EGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSI 554
Query: 1009 WVLTGDKKETAINIGYSSRLVGQDTPLLD---LDGYSLD 1044
+LTGD A R +G T + + L
Sbjct: 555 KMLTGDAVGIARETS---RQLGLGTNIYNAERLGLGGGG 590
Score = 44.2 bits (105), Expect = 2e-04
Identities = 63/408 (15%), Positives = 131/408 (32%), Gaps = 128/408 (31%)
Query: 59 NKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVV 118
N++ K + F F A+L + + ++++
Sbjct: 103 NQMKEEKENHFLKF----LGFFVGPIQFVMEGAAVLAAG-----LEDWVDFGVICGLLLL 153
Query: 119 SGI---------KEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNN 169
+ + I++++K+ LA V+R+G + + ++ GDI++V
Sbjct: 154 NAVVGFVQEFQAGSIVDELKKTLA------LKAVVLRDGTLKEIEAPEVVPGDILQVEEG 207
Query: 170 SFFPGDLMVLSTSENEGMCYIETMNLDGETNLKVRQAPNETSSLTDPSSLAQLKGQIECD 229
+ P D +++ + L+V Q S+LT SLA ++
Sbjct: 208 TIIPADGRIVT----------------DDAFLQVDQ-----SALTG-ESLA-----VDKH 240
Query: 230 HPNRFIYDFTGNFKERGRTAVPLGPERILLRGSMLRNTAWIIGIVVYTGPDS------KL 283
++ F +AV RG ++ TG ++ L
Sbjct: 241 KGDQV---FAS-------SAV--------KRGEA-------FVVITATGDNTFVGRAAAL 275
Query: 284 MKNATSA--PLKRSTVDKITNTQTIMLFVLLLALCFISAAASTIWTLGRNAGDWYLLSRN 341
+ A+ ++ I +L +L++ I +W R+
Sbjct: 276 VNAASGGSGHFTEV-LNGIGT----ILLILVIFTLLI------VWVSS--------FYRS 316
Query: 342 PSFHSNLLTFIILYNNLIPISLQVTLEIVRFIQATFINNDMDMYYEPTDTPAAAR---TS 398
L + + +P+ L + + A + A +
Sbjct: 317 NPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGA------AYL---------AKKKAIVQ 361
Query: 399 NLN--EELGMVKFVFSDKTGTLTRNVMEFKICSVAGNILVPNFNSNNV 444
L+ E L V+ + SDKTGTLT+N + S+ V + ++
Sbjct: 362 KLSAIESLAGVEILCSDKTGTLTKNKL-----SLHDPYTVAGVDPEDL 404
Score = 34.6 bits (80), Expect = 0.22
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 576 CRVSPLQKAEVVELVTVNTNSV--TLAIGDGANDVAMIQKAHVGVGISG 622
V P K VVE++ V T GDG ND ++KA G+ + G
Sbjct: 608 AEVFPQHKYNVVEILQQRGYLVAMT---GDGVNDAPSLKKADTGIAVEG 653
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 75.8 bits (187), Expect = 6e-14
Identities = 50/251 (19%), Positives = 76/251 (30%), Gaps = 41/251 (16%)
Query: 797 NPSIEPVVREFLTMLAVCH--TVIPEMKDGVLQYHAS-SPDEKALI-LGAKA---FGYVF 849
+ E T+ A+C+ ++ G Y E AL L K V
Sbjct: 404 RSGQFDGLVELATICALCNDSSLDFNETKG--VYEKVGEATETALTTLVEKMNVFNTEVR 461
Query: 850 TSKHYKEIEITALGETQRYVILNVLEFTSDRKRMSVIVRTPQNEI-----KVFCKGADNM 904
+ Q LEF+ DRK MSV ++ K+F KGA
Sbjct: 462 NLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEG 521
Query: 905 ILSR------------LDSHSKYVDETKTHLEQFASSGYRTLCFGVAKIPEEKYKNWSAL 952
++ R + K + R L +A
Sbjct: 522 VIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCL--ALA------------- 566
Query: 953 YKNAATSMTNREERIAEVCEMIETKLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLT 1012
++ + ET L +G + D ++ V +I A I V ++T
Sbjct: 567 TRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMIT 626
Query: 1013 GDKKETAINIG 1023
GD K TAI I
Sbjct: 627 GDNKGTAIAIC 637
Score = 35.3 bits (82), Expect = 0.12
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 402 EELGMVKFVFSDKTGTLTRNVM 423
E LG + SDKTGTLT N M
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQM 362
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 63.0 bits (154), Expect = 1e-11
Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 34/128 (26%)
Query: 833 PDEKALILGAKAFGYVFTSKHYKEI-EITALGETQRYVILNVLEFTSDRKRMSVIVRTPQ 891
+ A++ G + +++I EI F +R+RMSV+V
Sbjct: 35 LLDTAVLEGTDEESARSLASRWQKIDEI---------------PFDFERRRMSVVVAENT 79
Query: 892 NEIKVFCKGADNMILSRLDSHSKYV----------DETKTHL----EQFASSGYRTLCFG 937
++ CKGA IL+ V D + + G R +
Sbjct: 80 EHHQLVCKGALQEILNV----CSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQGLRVVAVA 135
Query: 938 VAKIPEEK 945
+P +
Sbjct: 136 TKYLPARE 143
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
Length = 1034
Score = 63.4 bits (155), Expect = 3e-10
Identities = 40/206 (19%), Positives = 61/206 (29%), Gaps = 43/206 (20%)
Query: 833 PDEKALILGAKAFGYVFTSKHYKEIEITALGETQRYVILNVLEFTSDRKRMSVIVRTP-- 890
E AL+ F+ G +R+ + + F S K I
Sbjct: 461 ASETALL--------KFSELTLGNAM----GYRERFPKVCEIPFNSTNKFQLSIHTLEDP 508
Query: 891 -QNEIKVFCKGADNMILSR------------LDSHSKYVDETKTHLEQFASSGYRTLCFG 937
+ KGA +L R LD + + +T G R L F
Sbjct: 509 RDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWR--EAFQTAYLSLGGLGERVLGFC 566
Query: 938 VAKIPEEKYKNWSALYKNAATSMTNREERIAEVCEMIETKLHLLGASAVEDKLQEYVPET 997
+ E+ Y A E + L G ++ D + VP+
Sbjct: 567 QLYLSEKDYPPGYAFD--------------VEAMNFPTSGLSFAGLVSMIDPPRATVPDA 612
Query: 998 IAALIKAKISVWVLTGDKKETAINIG 1023
+ A I V ++TGD TA I
Sbjct: 613 VLKCRTAGIRVIMVTGDHPITAKAIA 638
Score = 36.9 bits (86), Expect = 0.047
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 412 SDKTGTLTRNVM 423
SDKTGTLT+N M
Sbjct: 385 SDKTGTLTQNRM 396
Score = 31.1 bits (71), Expect = 2.3
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 21/108 (19%)
Query: 524 ELKHRTALASLLGTTNNNYALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQK 583
++ R + + A +I+G+ L + + +E T ++ R SP QK
Sbjct: 653 DIAARLRVPVDQVNRKDARACVINGMQLK-DMDPS---ELVEALRTHPEMVFARTSPQQK 708
Query: 584 AEVVEL-------VTVNTNSVTLAIGDGANDVAMIQKAHVGV--GISG 622
+VE V +VT GDG ND ++KA +GV GI+G
Sbjct: 709 LVIVESCQRLGAIV-----AVT---GDGVNDSPALKKADIGVAMGIAG 748
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 61.1 bits (149), Expect = 2e-09
Identities = 38/173 (21%), Positives = 56/173 (32%), Gaps = 31/173 (17%)
Query: 866 QRYVILNVLEFTSDRKRMSVIVRTPQ---NEIKVFCKGADNMILSR------------LD 910
R + + F S K I + + + KGA IL R L
Sbjct: 477 DRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLK 536
Query: 911 SHSKYVDETKTHLEQFASSGYRTLCFGVAKIPEEKYKNWSALYKNAATSMTNREERIAEV 970
K + + + G R L F +PE+KY A+
Sbjct: 537 EDMK--EAFQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFD--------------ADE 580
Query: 971 CEMIETKLHLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINIG 1023
T L +G A+ D + VP+ + A I V ++TGD TA I
Sbjct: 581 PNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA 633
Score = 36.8 bits (86), Expect = 0.047
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 412 SDKTGTLTRNVM 423
SDKTGTLT+N M
Sbjct: 380 SDKTGTLTQNRM 391
Score = 31.1 bits (71), Expect = 2.3
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 21/108 (19%)
Query: 524 ELKHRTALASLLGTTNNNYALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQK 583
++ R + + A ++ G L L ++ ++ R SP QK
Sbjct: 648 DIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLD----DILHYHTEIVFARTSPQQK 703
Query: 584 AEVVEL-------VTVNTNSVTLAIGDGANDVAMIQKAHVGV--GISG 622
+VE V +VT GDG ND ++KA +GV GISG
Sbjct: 704 LIIVEGCQRQGAIV-----AVT---GDGVNDSPALKKADIGVAMGISG 743
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 2e-07
Identities = 73/481 (15%), Positives = 128/481 (26%), Gaps = 148/481 (30%)
Query: 638 QFRFLLKLL----------FVHGSWNYNRMCLLILYSFYKNICLYVMELWFAIYSGWSGQ 687
L L FV N Y F +M S
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRIN-------YKF-------LMSPIKTEQRQPSMM 108
Query: 688 -VLFERWTIGLYNVLFTAFPPLAIGILDQVCSARTRL------KYPILY----------- 729
++ LYN F + L R L K ++
Sbjct: 109 TRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 730 SQTANT------FNVKIFWIWIGNALFHSMLMFWIPMLIYGQGTIWANGKDGGYLVLGNI 783
+ + KIFW+ + N ++ + L+Y W + D + I
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 784 VYTVTEQSRMIARNPSIEPVVREFLTMLAVCHTVIPEMKDGVLQYHASSPDEKALILGAK 843
E R++ + + L V V + KA
Sbjct: 228 HSIQAELRRLLKS--------KPYENCLLVL--------LNVQ-------NAKAW----N 260
Query: 844 AFGY----VFTSKHYKEI--EITALGETQRYVILNVLEFTSDRKR--MSVIVRTPQNEI- 894
AF + T++ +K++ ++A T + + + T D + + + ++
Sbjct: 261 AFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 895 KVFCKG---ADNMI-------LSRLDSHSKYVDETKTH------LEQFASSGYRTL--CF 936
+ ++I L+ D + K+V+ K L + YR +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 937 GV----AKIPEEKYKN-WSALYKNAATSMTNREERIAEVCEMIETKLHLLGASAVEDKLQ 991
V A IP W + I ++ KLH S VE + +
Sbjct: 379 SVFPPSAHIPTILLSLIW--------------FDVIKSDVMVVVNKLH--KYSLVEKQPK 422
Query: 992 EYVPETIAALIKAKISVWVLTGDKKETAINIGYS-SRLVGQ----------DTPLLDLDG 1040
E IS+ + + K N +V D LD
Sbjct: 423 ES-----------TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 1041 Y 1041
Y
Sbjct: 472 Y 472
Score = 47.5 bits (112), Expect = 2e-05
Identities = 89/663 (13%), Positives = 177/663 (26%), Gaps = 213/663 (32%)
Query: 280 DSKLMKNATSAPLKRSTVDKITNTQTIMLFVLLLALCFISAAASTIWTLGRNAGDWYLLS 339
D K +++ + L + +D I ++ + L L +S + + + +L
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ---KFVEE--VLR 88
Query: 340 RNPSFHSNLLTFIILYNNLIPISLQVTLEIVRFI-QATFINNDMDMYYEPTDTPAAARTS 398
N F L + + Q ++ +I Q + ND ++ +
Sbjct: 89 INYKF---------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYL 138
Query: 399 NLNEEL------------GMVKFVFSDKTGTLTRNVM-EFKI-CSVAGNILVPNF--NSN 442
L + L G++ KT + +V +K+ C + I F N
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGS---GKT-WVALDVCLSYKVQCKMDFKI----FWLNLK 190
Query: 443 NVQEQSRMIARNPSIEPVVREFLTML-AVCHTVCSVAGNILVPNFNSNNVKEQSRMIARN 501
N L ML + + + PN+ S + S + R
Sbjct: 191 NCNS--------------PETVLEMLQKLLYQ--------IDPNWTSRS-DHSSNIKLRI 227
Query: 502 PSIEPVVREFLTMLAVCHTVYIELKHRTALASLLGTTNNNYALIIDGLALDYALKHELRK 561
SI+ +R L + L L++ +
Sbjct: 228 HSIQAELRRLLK----------SKPYENCL------------LVLL----NVQNAKAW-N 260
Query: 562 DFLELCLTCNAVICCRVSPLQKAEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGIS 621
F + C++ L+T VT + + + +
Sbjct: 261 AFN---------LSCKI----------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 622 GVEGLQAACASDYSIGQFR--------FLLKLL--FVH---GSWNY------------NR 656
V+ L D L ++ + +W+
Sbjct: 302 EVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 657 MCLLILYS-----FYK---------NICLYVME-LWFAIYSGWSGQV--------LFERW 693
L +L + +I ++ +WF + V L E+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 694 ----TIGLYNVLFTAFPPLAIGILDQVCSARTRL------KYPILYSQTANTFNVK---- 739
TI + ++ L L Y I + ++
Sbjct: 421 PKESTISIPSIYLE---------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 740 -IFWIWIGNALFH--------SMLMF--------WIPMLIYGQGTIWANGKDGGYLVLGN 782
+ IG H M +F ++ I T W + N
Sbjct: 472 YFYS-HIG---HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS-----ILN 522
Query: 783 IVYTVTEQSRMIARN-PSIEPVVREFLTMLAVC--HTVIPEMKDGVLQYHASSPDEKALI 839
+ + I N P E +V L L + + + D +L+ A +++A+
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD-LLRI-ALMAEDEAIF 580
Query: 840 LGA 842
A
Sbjct: 581 EEA 583
Score = 47.2 bits (111), Expect = 3e-05
Identities = 80/598 (13%), Positives = 167/598 (27%), Gaps = 219/598 (36%)
Query: 34 VDCITGKADHR---VININAPQ-----SCKFV----GNKISTAKYSLVTFFPCFLFEQFR 81
+D TG+ ++ ++++ CK V + +S + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-------HIIMSKD 59
Query: 82 RYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH----LADGEI 137
S LF LL + +++ +E++ R L I
Sbjct: 60 AVSGTLRLFWTLLSK-----QE---------------EMVQKFVEEVLRINYKFLMS-PI 98
Query: 138 NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNS--FFPGD-------------LMVLSTS 182
+Y+EQ +D ++YN++ F + L+ L +
Sbjct: 99 KTEQRQPSMMTRMYIEQ-RD-------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 183 EN---EGM--CYIETMNLDGETNLKVRQAPNETSSLTDPSSLAQLKGQI------ECDHP 231
+N +G+ G+T + + ++ +I C+ P
Sbjct: 151 KNVLIDGVLGS--------GKTWVAL-------DVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 232 -------NRFIYDFTGNFKERGRTAVPLGPERILLRGSMLRNTAWIIGIVVYTGPDSKLM 284
+ +Y N+ R I LR ++ +L+
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSR-----SDHSSNIKLRIHSIQAE------------LRRLL 238
Query: 285 KNATSAPLKRS--TVDKITNTQTIMLF-----VLLLALCFISAAASTIWTLGRNAGDWYL 337
K S P + + + N + F +LL T R
Sbjct: 239 K---SKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-------------T--RFKQVTDF 280
Query: 338 LSRNPSFHSNLLTFIILYNNLIPISLQVTLEIVRFIQATFINNDMDMYYEPTDTPAAART 397
LS + H I L ++ + ++ ++ +++ P D P T
Sbjct: 281 LSAATTTH------ISLDHHSMTLTPDEVKSLL----LKYLDCR------PQDLPREVLT 324
Query: 398 SN-LNEELGMVKFVFSDKTGTLTRNVMEFKICSVAGNILVPNFNSNNVQEQSRMIARNPS 456
+N L ++ D T N+ N + + +I S
Sbjct: 325 TNPR--RLSIIAESIRDGLATWD------------------NWKHVNCDKLTTIIES--S 362
Query: 457 IE----PVVREFLTMLAVCHTVCSVAGNILVPNFNSN-NVKEQSRMIARNPSIEPVVREF 511
+ R+ L+V F + ++ + I+ V
Sbjct: 363 LNVLEPAEYRKMFDRLSV---------------FPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 512 LTMLAVCHTVYIELKHRTALASLLGTTNNNYALIIDGLALDYALKHE----LRKDFLE 565
+ L H+ SL+ + I + L+ +K E L + ++
Sbjct: 408 VNKL-----------HK---YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Score = 35.2 bits (80), Expect = 0.14
Identities = 27/244 (11%), Positives = 62/244 (25%), Gaps = 83/244 (34%)
Query: 848 VFTSKHYKEIEITALGETQRYVILNVLE---------FTSDR---------KRMSVIVRT 889
+ + + I ++ + + L F + + R
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 890 PQNEIKVFCKGADNMILSRLDSHSKY-------VDETKTHLEQFASSGYRTLC------- 935
P +++ + D + + +KY + + L + + +
Sbjct: 105 PSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 936 ------------------FGV-------AKIPEEKYKNWSALYKNAATSMTNREERIAEV 970
F + PE + L + T+R + + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 971 ---CEMIETKL-HLLGASAVEDKLQEYV-----------PETIAAL-IKAKISVWVLTGD 1014
I+ +L LL K + Y + A + KI + T
Sbjct: 224 KLRIHSIQAELRRLL-------KSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLTTRF 274
Query: 1015 KKET 1018
K+ T
Sbjct: 275 KQVT 278
Score = 31.7 bits (71), Expect = 1.8
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 15/91 (16%)
Query: 55 KFVGNKISTAKYSLVTFFPCF-LFEQFRRYSNIFF----LFIALLQQIPDVSPT------ 103
+F+ KI + +Q + Y + L+ I D P
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 104 -GRYTTLIPLILIMVVSGIKEIIEDIKRHLA 133
+YT L+ + L+ I E+ + +
Sbjct: 561 CSKYTDLLRIALMAEDEA---IFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 2e-07
Identities = 40/265 (15%), Positives = 71/265 (26%), Gaps = 112/265 (42%)
Query: 274 VVYTGPDSKLMKNATSAPLKRSTVDKITNTQTIMLFVLLLALCFISAAASTIWTLGRNAG 333
+ L +AT TQ L + AA ++ G
Sbjct: 1717 YTFRSEKGLL--SATQ------------FTQ-----PALTL---MEKAAFEDL---KSKG 1751
Query: 334 DWYLLSRNPSF--HSNLLTFIIL--YNNLIP----ISLQVTLEIVR----FIQATFINND 381
L+ + +F HS L Y L +S++ +E+V +Q
Sbjct: 1752 ---LIPADATFAGHS-------LGEYAALASLADVMSIESLVEVVFYRGMTMQV------ 1795
Query: 382 MDMYYEPTDTPAAARTSNLNEELGMVKFVFSDKTGTLTRNVMEF---KICSVAGNILVP- 437
A R GM+ + ++ +++ ++ G ++
Sbjct: 1796 -----------AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 438 NFNSNNVQEQSRMIARNPSIEPVVREFLTMLAVCHTVCS-------VAGNILVPNFNSNN 490
N+N N Q V + N+L N
Sbjct: 1845 NYNVENQQ---------------------------YVAAGDLRALDTVTNVL------NF 1871
Query: 491 VKEQSRMIAR---NPSIEPVVREFL 512
+K Q I + S+E V L
Sbjct: 1872 IKLQKIDIIELQKSLSLEE-VEGHL 1895
Score = 51.2 bits (122), Expect = 2e-06
Identities = 84/578 (14%), Positives = 144/578 (24%), Gaps = 210/578 (36%)
Query: 201 LKVRQAPNETSSLTD-PSSLAQLKG--------QIECDHPNRF-------IYDFTGNFKE 244
K+ P E + D P++ A+L G +E +F + +F +
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL- 96
Query: 245 RGR----TAVPLGPE---RILLRGSMLRN--TA-WIIGIVVYTGPDSKLMKNA------- 287
G A L E ++ +++N TA + +S L +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 288 ----------------------TSAPLKRSTVDKITNTQTIMLFVLLLALCFISAAASTI 325
T L + T L L + A +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET--------LSELIRTTLDAEKV 208
Query: 326 WTLGRNAGDWYLL---SRNPSFHSNLLTFIILYNNLIPISLQVTLEIVRFIQAT-FINND 381
+T G N +W L S P LL+ IPIS I +
Sbjct: 209 FTQGLNILEW--LENPSNTPD-KDYLLS--------IPISCP-------LIGVIQLAH-- 248
Query: 382 MDMYYEPTDTPAAARTSNLN-EELGMVKFVFSDKTGTLTRNVMEFKICSVAGNILV---- 436
Y A+ EL S G + ++
Sbjct: 249 ---YV------VTAKLLGFTPGEL------RSYLKGATG----------HSQGLVTAVAI 283
Query: 437 ------PNFNSNNVQE---------QSRMIARNPSIEP-VVREFLT--------MLAVC- 471
+F + + + N S+ P ++ + L ML++
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 472 -----------HTVCSVAGN--ILVPNFNS--NNV-----------------------KE 493
T + + + N N V +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 494 QSR--MIARNPSIEPVVREFLTMLAVCHTVYIELKHRTALASLLGTTNNNYALIIDGLAL 551
QSR R FL + + H+ + A + N + + +
Sbjct: 404 QSRIPFSERKLKF---SNRFLPVASPFHSHLLV----PASDLINKDLVKN-NVSFNAKDI 455
Query: 552 DYALKH-----ELRKDFLELCLTCNAVICCRVSPLQKAEVVELVTVNTNSVT--LAIGDG 604
+ +LR L ++ V C P V+ T T L G G
Sbjct: 456 QIPVYDTFDGSDLRV--LSGSISERIVDCIIRLP------VKWETTTQFKATHILDFGPG 507
Query: 605 AND--VAMIQKAHVGVGISGVEG--LQAACASDYSIGQ 638
+ + G G+ + L DY Q
Sbjct: 508 GASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 47.4 bits (112), Expect = 3e-05
Identities = 108/663 (16%), Positives = 192/663 (28%), Gaps = 270/663 (40%)
Query: 429 SVAGNILVPN---FNSNNVQEQSRMIARNPSI------EPV-----VREFLTMLAVCHTV 474
S+ +LVP F ++ +QEQ I P+ EP V +FL ++
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS----- 69
Query: 475 CSVAGNILVPNFNSNNVKEQSRMIARNPSIEPVVREFLTMLAVCHTVYIELK--HRTALA 532
++ E S++ + + + EF Y+E H A
Sbjct: 70 ---------------SLVEPSKVGQFDQVLNLCLTEF-------ENCYLEGNDIH-ALAA 106
Query: 533 SLLGTTNNNYALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQKAEVVELVT- 591
LL + EL K+++ + P K L
Sbjct: 107 KLLQENDT-----------TLVKTKELIKNYITARIMAK-------RPFDKKSNSALFRA 148
Query: 592 VNTNSVTL-AI--GDGANDV-----------------AMIQKAHVGVGISGVEGLQAACA 631
V + L AI G G D +I+ + E L
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA--------ETLSELIR 200
Query: 632 SDYSIGQFRFLLKLLFVHG----SW----------NYNRMCLL-ILYSFYKNICL----- 671
+ + F G W +Y LL I S I +
Sbjct: 201 TTLDAEKV-------FTQGLNILEWLENPSNTPDKDY----LLSIPISC-PLIGVIQLAH 248
Query: 672 YVMELWFAIYSGWSGQVLFE--RWTIGLYNVLFTAFPPLAIGILDQVCSARTRLKYPILY 729
YV+ A G++ L + G L TA +AI +
Sbjct: 249 YVV---TAKLLGFTPGELRSYLKGATGHSQGLVTA---VAI-------AE---------- 285
Query: 730 SQTANTF--NVKIFWIWIGNALFHSMLMFWIPMLIYGQGTIWANGKDGGYLVLGNIVYTV 787
+ + +F +V+ A+ ++F+I G
Sbjct: 286 TDSWESFFVSVR-------KAI---TVLFFI-----------------GV---------- 308
Query: 788 TEQSRMIARNPSIEP-VVREFLT--------MLAVCHTVIPEMKDGVLQYHASSPDEK-- 836
+ N S+ P ++ + L ML++ + +++D V + ++ P K
Sbjct: 309 --RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 837 --ALILGAKAF---G-----YVFTSKHYKEIEITALGETQRYVILNVLEFTSDRK-RMSV 885
+L+ GAK G Y + ++ + + G Q + F S+RK + S
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGL-NLTLRKAKAPS-GLDQSRI-----PF-SERKLKFSN 418
Query: 886 I---VRTPQNEIKVFCKGADNMILSRLDSHSKYVDETKTHLEQFASSGYRTLCFGVA--K 940
V +P F HS + + + + F +
Sbjct: 419 RFLPVASP------F--------------HSHLLVPASDLINKDLVK--NNVSFNAKDIQ 456
Query: 941 IPEEKYKNWSALYKNAATSMTNREERIAEVCEMIETK------------LHLL-----GA 983
IP + S L + + S++ R + + I H+L GA
Sbjct: 457 IPVYDTFDGSDL-RVLSGSISER------IVDCIIRLPVKWETTTQFKATHILDFGPGGA 509
Query: 984 SAV 986
S +
Sbjct: 510 SGL 512
Score = 33.9 bits (77), Expect = 0.36
Identities = 52/330 (15%), Positives = 99/330 (30%), Gaps = 114/330 (34%)
Query: 56 FVGNKISTAKYSLVTFFPCFLFEQFRRYSNIF---FLFIALLQQIPDVSPTGRYTTLI-- 110
VG+ I + +L L +F + L+ P +P Y I
Sbjct: 183 LVGDLIKFSAETLSE-----LIRTTLDAEKVFTQGLNILEWLEN-PSNTPDKDYLLSIPI 236
Query: 111 --PLI---------LIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQ---WK 156
PLI + + G +++ +L G H S ++ + + + W+
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTP--GELRSYLK-GATGH-SQGLV--TAVAIAETDSWE 290
Query: 157 DLKVGDIVKVYNNSFFPGDLMVLSTSENEGMCYIE-TMNLDGETNLKVRQAPNETSSLTD 215
+ K FF G + E + ++ D N NE
Sbjct: 291 SF-FVSVRKAITVLFFIG----VRCYEAYPNTSLPPSILEDSLEN-------NEGV---- 334
Query: 216 PSSLAQLKG----QIECDHPNRFIYDFTGNFKERGRTAVPL--GPERILLRGSMLRNTAW 269
PS + + Q++ ++ + + + L G +N
Sbjct: 335 PSPMLSISNLTQEQVQ-----DYVNKTNSHLPAGKQVEISLVNGA----------KN--- 376
Query: 270 IIGIVVYTGP-------DSKLMKNATSAPLKRSTVDKITNTQTIMLFVLLLALCF--ISA 320
+VV +GP + L K + L +S +I ++ + F F +++
Sbjct: 377 ---LVV-SGPPQSLYGLNLTLRKAKAPSGLDQS---RIPFSERKLKFSN----RFLPVAS 425
Query: 321 AASTIWTLGRNAGDWYLLSRNPSFHSNLLT 350
P FHS+LL
Sbjct: 426 ---------------------P-FHSHLLV 433
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 50.7 bits (122), Expect = 5e-07
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 583 KAEVVELVTVNTN-SVTLAIGDGANDVAMIQKAHVGVGISGVEGLQA-ACASDYSIGQFR 640
K +V++L+ + + IGDGA D+ A +G G Q + + I F
Sbjct: 158 KGKVIKLLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFV 217
Query: 641 FLLKLL 646
LL L
Sbjct: 218 ELLGEL 223
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 49.5 bits (119), Expect = 1e-06
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDYSIGQFRFLLKLL 646
T+A+GDGAND++M +KA + + L+ R +LK +
Sbjct: 162 TVAVGDGANDISMFKKAGLKIAFCAKPILKEKADICIEKRDLREILKYI 210
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 49.4 bits (118), Expect = 3e-06
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDYSIGQFRFLLKLLFVHG 650
T+A+GDGAND+ M+ A +GV ++A ++ +F L ++ +
Sbjct: 264 TVAVGDGANDLVMMAAAGLGVAYHAKPKVEAKA--QTAV-RFAGLGGVVCILS 313
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 49.0 bits (117), Expect = 4e-06
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDYSIGQFRFLLKLLFV 648
+A GDGAND+ M++ A G+ ++ + I + LLF+
Sbjct: 265 IIACGDGANDLPMLEHAGTGIAWKAKPVVREKI--HHQI-NYHGFELLLFL 312
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 49.0 bits (117), Expect = 6e-06
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDYSIGQFRFLLKLLFVHG 650
T+A+GDGAND+ M+ A +G+ + L+ D S+ +L +LF+ G
Sbjct: 342 TVAVGDGANDIDMLAAAGLGIAFNAKPALREVA--DASL-SHPYLDTVLFLLG 391
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 47.2 bits (113), Expect = 8e-06
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASDYSIGQFRFLLKLLFV 648
TL +GDGAND++M + AH+ + + E L+ + I L + +
Sbjct: 161 TLVVGDGANDLSMFKHAHIKIAFNAKEVLKQHA--THCI-NEPDLALIKPL 208
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 45.3 bits (108), Expect = 3e-05
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 524 ELKHRTALASLLGTTNNNYALIIDGLALDYALKHELRKDFLELCLTCNAVICCRVSPLQK 583
L+ R + L T ++ L L H+L + + + + Q
Sbjct: 80 WLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHKL--EIDDSDRVVGYQLRQKDPKRQS 137
Query: 584 AEVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGV 618
+ +A GD ND M+ +AH G+
Sbjct: 138 VIAFKS----LYYRVIAAGDSYNDTTMLSEAHAGI 168
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.9 bits (92), Expect = 0.001
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 986 VEDKLQEYVPETIAAL-IKAKI 1006
++ L+ Y ++ AL IKA +
Sbjct: 25 LQASLKLYADDSAPALAIKATM 46
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S
genomics, national institute of allergy and infectious
DISE (niaid); 1.70A {Francisella tularensis subsp}
Length = 219
Score = 40.7 bits (96), Expect = 0.001
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 598 TLAIGDGANDVAMIQKAHVGVGISGVEGL---QAACASDYSIGQFRFLLKLL 646
+AIGDG D + +K + I+ +E + + S Y L L+
Sbjct: 167 VIAIGDGYTDYQLYEKGYATKFIAYMEHIEREKVINLSKYVARNVAELASLI 218
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 40.5 bits (95), Expect = 0.002
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 22/139 (15%)
Query: 487 NSNNVKEQSRMIARNPSIEPVVREFLTMLAVCHTVYIELKHRTALASLLGTTNNNYALII 546
S+ +E + + + I REF+ + E + + S +
Sbjct: 61 PSSLKEEITSFVLEDAKIREGFREFVAFIN-------EHEIPFYVIS------GGMDFFV 107
Query: 547 DGLA-----LD--YALKHELRKDFLELCLTCNAVICCRVSPLQ-KAEVVELVTVNTNSVT 598
L D Y D++ + + C K V+ + N
Sbjct: 108 YPLLEGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPSVIHEL-SEPNQYI 166
Query: 599 LAIGDGANDVAMIQKAHVG 617
+ IGD DV + + +
Sbjct: 167 IMIGDSVTDVEAAKLSDLC 185
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 38.6 bits (91), Expect = 0.005
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+GDG ND+ + V
Sbjct: 172 VAHVGDGENDLDAFKVVGYKV 192
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 38.7 bits (91), Expect = 0.006
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
L IGD ND+ M Q
Sbjct: 172 ILVIGDSNNDMPMFQLPVRKA 192
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 38.7 bits (91), Expect = 0.006
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+ +GD ND+ MI+ A +GV
Sbjct: 216 VMTLGDQGNDLTMIKYAGLGV 236
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 38.7 bits (91), Expect = 0.007
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+AIGDG ND++MI+ A +GV
Sbjct: 216 VIAIGDGYNDLSMIKFAGMGV 236
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 38.8 bits (91), Expect = 0.007
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
L +GD ND+AM+
Sbjct: 243 VLVVGDAENDIAMLSNFKYSF 263
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 38.7 bits (91), Expect = 0.007
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+AIGD ND+AMI+ A VGV
Sbjct: 217 IMAIGDQENDIAMIEYAGVGV 237
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine
triphosph archaeal proteins, cation transport proteins;
10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 39.0 bits (92), Expect = 0.007
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 979 HLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETA 1019
+ G AV D L+E + L + I V ++TGD +A
Sbjct: 447 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSA 487
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 38.3 bits (90), Expect = 0.008
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+A GDG ND+ M++ A +GV
Sbjct: 213 IMACGDGGNDIPMLKAAGIGV 233
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 38.3 bits (90), Expect = 0.008
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
T+ GDG ND+ M Q + V +
Sbjct: 219 TICFGDGQNDIVMFQASDVTI 239
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 39.1 bits (92), Expect = 0.009
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 979 HLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETA 1019
+ VED ++ PETI L ++ I + +LTGD K TA
Sbjct: 544 KTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTA 584
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 38.2 bits (90), Expect = 0.010
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 980 LLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETA 1019
+ G A+ D+++ E I+ L I +LTGD + A
Sbjct: 135 VSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVA 174
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 37.9 bits (89), Expect = 0.011
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
T++ GDG ND++M++ A +GV
Sbjct: 206 TMSFGDGGNDISMLRHAAIGV 226
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 37.9 bits (89), Expect = 0.011
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
A GDG ND+ M+ GV
Sbjct: 202 VYAFGDGLNDIEMLSFVGTGV 222
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine
triphosph archaeal proteins, cation transport proteins;
10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 38.7 bits (91), Expect = 0.012
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 980 LLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETAINIG 1023
+ G AV D L+E + L + I V ++TGD +A I
Sbjct: 526 VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS 569
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural
genomics, BSGC structure funded by NIH structure
initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.108.1.10
Length = 268
Score = 37.5 bits (88), Expect = 0.013
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+ GD ND+ M ++A + V
Sbjct: 209 IVVFGDNENDLFMFEEAGLRV 229
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus} PDB:
2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 37.4 bits (88), Expect = 0.014
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 980 LLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETA 1019
+ + + D + + + + L + + +L+GDK++
Sbjct: 127 PIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKV 166
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 36.9 bits (85), Expect = 0.021
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 595 NSVTLAIGDGANDVAMIQKAHVGV 618
+ +GD ND+ + + + V
Sbjct: 194 ARFAVGLGDSLNDLPLFRAVDLAV 217
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 37.0 bits (85), Expect = 0.024
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 593 NTNSVTLAIGDGANDVAMIQKAHVGV 618
TL +GDG ND +++ V
Sbjct: 206 GKRPTTLGLGDGPNDAPLLEVMDYAV 231
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 36.7 bits (84), Expect = 0.025
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 585 EVVELVTVNTNSVTLAIGDGANDVAMIQKAHVGVGISGVEGLQAACASD 633
+++ + A+GD ND M + + ++ +A S
Sbjct: 186 ILLDFYKRLGQIESYAVGDSYNDFPMFEVVDKVFIVGSLKHKKAQNVSS 234
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 36.4 bits (85), Expect = 0.030
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
TL GD ND+ + + + GV
Sbjct: 181 TLVCGDSGNDIGLFETSARGV 201
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 36.4 bits (85), Expect = 0.038
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+A GDG ND M+ A G
Sbjct: 228 CIAFGDGMNDAEMLSMAGKGC 248
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 36.3 bits (85), Expect = 0.039
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 979 HLLGASAVEDKLQEYVPETIAALIKAKISVWVLTGDKKETA 1019
+ G AV D L+E + L + I V ++TGD +A
Sbjct: 153 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSA 193
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 36.1 bits (84), Expect = 0.044
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+A GDG ND+ M++ A
Sbjct: 247 LMAFGDGGNDIEMLKLAKYSY 267
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
{Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
2hf2_A
Length = 271
Score = 36.0 bits (84), Expect = 0.046
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+AIGD ND M++ A
Sbjct: 210 VVAIGDSGNDAEMLKMARYSF 230
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 36.0 bits (84), Expect = 0.048
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+AIG +D+ MI+ A +GV
Sbjct: 221 VVAIGHQYDDLPMIELAGLGV 241
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 36.1 bits (84), Expect = 0.049
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
T A+GD ND +M++ A GV
Sbjct: 235 TAAVGDSLNDKSMLEAAGKGV 255
>3dao_A Putative phosphatse; structural genomics, joint center for S
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Length = 283
Score = 36.0 bits (84), Expect = 0.049
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
GD ND+ M+Q A +
Sbjct: 230 VCCFGDNLNDIEMLQNAGISY 250
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 35.9 bits (83), Expect = 0.055
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 598 TLAIGDGANDVAMIQKAHVGV 618
+A GD NDV M+Q G
Sbjct: 230 AIAFGDSGNDVRMLQTVGNGY 250
>2ida_A Hypothetical protein; zinc binding protein, structural genomics,
PSI-2, protein structure initiative; NMR
{Rhodopseudomonas palustris} SCOP: g.44.1.5
Length = 102
Score = 31.1 bits (70), Expect = 0.41
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 564 LELCLTCNAVICCRVSPLQKA 584
L +C TC V CC SP + A
Sbjct: 34 LRICRTCGHVGCCDDSPHKHA 54
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase
regulator; NMR {Homo sapiens}
Length = 149
Score = 31.6 bits (71), Expect = 0.63
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 4/57 (7%)
Query: 80 FRRYSNIFFLFIALLQQIPDVS----PTGRYTTLIPLILIMVVSGIKEIIEDIKRHL 132
R + L L + P + + R + ++ G + L
Sbjct: 44 RRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVGRTSRGLARLQLL 100
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.9 bits (72), Expect = 0.66
Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 31/90 (34%)
Query: 382 MDMYYEPTDTPAAARTSNLNEEL-------GMVKFVFSDKTGTLTRNVMEFKICSVAGNI 434
M M E D A R NLN L K V G + +C++ G +
Sbjct: 1 M-MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDV--------VCALCGLV 51
Query: 435 LVPNFNSNNVQEQSRMIARNPSIEPVVREF 464
L +++ E R F
Sbjct: 52 L-----------SDKLVDTRS--EW--RTF 66
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices
fold, chroloplast, TRAN isoprenoid biosynthetic process;
2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Length = 348
Score = 32.3 bits (74), Expect = 0.81
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 902 DNMILSRLDSHSKYVDETKTHLEQFASSGYR---TLCFGVAKI--PEEKYKNWSALYKNA 956
N + + + + + + G + T+ +A
Sbjct: 22 SNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIV 81
Query: 957 ATSMTNREERIAEVCEMIET 976
+ + R+ IAE+ EMI
Sbjct: 82 TSELRVRQRGIAEITEMIHV 101
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu
initiative, PSI, midwest center for structural genomics;
1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24
Length = 332
Score = 31.7 bits (71), Expect = 1.2
Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 42/223 (18%)
Query: 437 PNFNSNNVQEQSRMIARNPSIEPVVREFLTMLA-VCHTVCSVAGNIL---VPNFNSNNVK 492
P ++ E + N + E+ LA AG L P + VK
Sbjct: 31 PWILTDFALELCMAVFNNARFFSNLSEYDDYLAYEVRREGYEAGYTLKLLTPFLAAAGVK 90
Query: 493 EQS--RMIARNPSIEPVVREFLTMLAVCHTVYI----ELKHRTALASLLGTTNNNYA--L 544
+ R+ + P + + L T + ++ AS++G + +
Sbjct: 91 NRDVERIAELSAKFVPDAEKAMATLQERWTPVVISTSYTQYLRRTASMIGVRGELHGTEV 150
Query: 545 IIDGLALDYALKHELRKDFLELC-----------------------LTCNAVICCRVSPL 581
D A+ LR++ L + + V
Sbjct: 151 DFD----SIAVPEGLREELLSIIDVIASLSGEELFRKLDELFSRSEVRKIVESVKAVGAG 206
Query: 582 QKAEVVE-LVTVNTNSVTLAIGDGANDVAMIQ--KAHVGVGIS 621
+KA+++ + +GD +D M + + GV I+
Sbjct: 207 EKAKIMRGYCESKGIDFPVVVGDSISDYKMFEAARGLGGVAIA 249
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 29.6 bits (67), Expect = 4.0
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 598 TLAIGDGANDVAMIQKAH---VGV--GISGVEGLQAACASDYSIGQFRFLLKLL 646
+ IGD +D+ ++ + V G +E L F ++L
Sbjct: 173 IVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKP-GTLFKNFAETDEVL 225
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein,
structural genomics, PSI- 2, protein structure
initiative; 3.00A {Corynebacterium diphtheriae}
Length = 583
Score = 30.3 bits (68), Expect = 4.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 770 ANGKDGGYLVLG------NIV---YTVTEQSRMIARNPSIEPVVREF 807
AN GG L++G I+ + + I + P V
Sbjct: 76 ANTPGGGALIVGIEDKTGRIIGTELDIDWLRQGIFTRIDVAPDVVAK 122
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain,
NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo
sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Length = 141
Score = 28.5 bits (63), Expect = 5.9
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 80 FRRYSNIFFLFIALLQQIPDVS-PTGRYTTLIPLILIMVVSGIKEIIEDIKRHL 132
+RR++ I+ L + P + +IP + + E+ + L
Sbjct: 41 YRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTL 94
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 29.6 bits (66), Expect = 6.0
Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 16/132 (12%)
Query: 639 FRFLLKLLFVHGSWNYNRMCLLILYSFYKNICLYVMELWFAIYSGWSGQVLFER-WTIGL 697
L+ LLF W + + + + Y+ WF + + R W I L
Sbjct: 386 QGLLVDLLF----WALVVLVGGSMIGQWLGVNGYLGNEWFLLGHQGWEYIELGRIWQIIL 441
Query: 698 YNVLFTAFPPLAIGILDQVCSARTRLKYPILYSQTANTFNVKIFWIWIGNALFHSMLMFW 757
+ + R + S ++ +F+ I F+ F
Sbjct: 442 VVGMLLW----LFIVF------RGVKRGLKRESDKGGLIHL-LFYSAIAVPFFYIFAFFI 490
Query: 758 IPMLIYGQGTIW 769
P + W
Sbjct: 491 QPDTNFTMADFW 502
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase,
oligomycin, membr protein-antibiotic complex; HET: FME
EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J*
2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Length = 76
Score = 26.6 bits (59), Expect = 9.3
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 311 LLLALCFISAAASTIWTLGRNAGDWYLLS-------RNPSFHSNLLTFIIL 354
L+LA +I A STI LG G + + RNPS + IL
Sbjct: 3 LVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAIL 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.406
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,810,699
Number of extensions: 977567
Number of successful extensions: 1955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1923
Number of HSP's successfully gapped: 80
Length of query: 1045
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 942
Effective length of database: 3,825,930
Effective search space: 3604026060
Effective search space used: 3604026060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.8 bits)