BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15804
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 223 bits (567), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 108/192 (56%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
V++T ++I G+Y GVTT++LDNLAAET A+ + HPDYA L + NLHK+T K +
Sbjct: 37 VKVTQRIISGVYEGVTTIELDNLAAETCAYMTTV-HPDYATL-AARIAISNLHKQTTKQF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S+V+E+LY VN TG PMISD Y I+M+N D+LNSAI+YDRDF Y++FGFKTLERS
Sbjct: 95 SKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL++ NG+V ERPQH++MRVA+GIHG DI+AA+ETYNL+S KYFTHA+ + +A +
Sbjct: 155 YLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLF--NAGTPK 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQMSSCFLVAMK 224
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 223 bits (567), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 108/192 (56%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
V++T ++I G+Y GVTT++LDNLAAET A+ + HPDYA L + NLHK+T K +
Sbjct: 37 VKVTQRIISGVYEGVTTIELDNLAAETCAYMTTV-HPDYATL-AARIAISNLHKQTTKQF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S+V+E+LY VN TG PMISD Y I+M+N D+LNSAI+YDRDF Y++FGFKTLERS
Sbjct: 95 SKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL++ NG+V ERPQH++MRVA+GIHG DI+AA+ETYNL+S KYFTHA+ + +A +
Sbjct: 155 YLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLF--NAGTPK 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQMSSCFLVAMK 224
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 222 bits (566), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 108/192 (56%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
V++T ++I G+Y GVTT++LDNLAAET A+ + HPDYA L + NLHK+T K +
Sbjct: 37 VKVTQRIISGVYEGVTTIELDNLAAETCAYMTTV-HPDYATL-AARIAISNLHKQTTKQF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S+V+E+LY VN TG PMISD Y I+M+N D+LNSAI+YDRDF Y++FGFKTLERS
Sbjct: 95 SKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL++ NG+V ERPQH++MRVA+GIHG DI+AA+ETYNL+S KYFTHA+ + +A +
Sbjct: 155 YLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLF--NAGTPK 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQMSSCFLVAMK 224
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/192 (60%), Positives = 148/192 (77%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
+IT+KVI+GLY GVTTV+LD LAAETAA KHPDYA+L + NLHKETKK +
Sbjct: 37 AQITMKVIQGLYSGVTTVELDTLAAETAATLT-TKHPDYAIL-AARIAVSNLHKETKKVF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S+V+E+LYN +N G +PM++ +I++ N DRLNSAIIYDRDF+YN+FGFKTLERS
Sbjct: 95 SDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+ + +A +
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLF--NAGTNR 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQLSSCFLLSMK 224
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 113/142 (79%), Gaps = 2/142 (1%)
Query: 51 NLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 110
NLHKETKK +S+V+E+LYN +N G +PM++ +I++ N DRLNSAIIYDRDF+YN
Sbjct: 12 NLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYN 71
Query: 111 FFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADV 170
+FGFKTLERSYL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+
Sbjct: 72 YFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPT 131
Query: 171 MLRTHAMSRSPRFSSFSLYGVR 192
+ +A + P+ SS L ++
Sbjct: 132 LF--NAGTNRPQLSSCFLLSMK 151
>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
Length = 761
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
Length = 761
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
Length = 761
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
Length = 761
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|3UUS|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|A Chain A, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|B Chain B, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|C Chain C, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|D Chain D, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 761
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
Length = 761
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
Length = 761
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
Length = 761
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
Length = 761
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>pdb|1JUB|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JUB|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1OVD|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
pdb|1OVD|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
Length = 311
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 24 AAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS-----EVIEELYNMVNKETGTR 78
AAE A + ++ D++ + L CPN+ E + + ++++E++ K G +
Sbjct: 105 AAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVK 164
Query: 79 TPMISD-KHYEII 90
P D H++I+
Sbjct: 165 LPPYFDLVHFDIM 177
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 38 DYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGT--RTPMISDKHYEIIMKNA- 94
+ A+L EL C ++ KE ++ +++++E +N NK + + P ++ + ++MK A
Sbjct: 422 ESALLKCIELCCGSV-KEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAP 480
Query: 95 ----DRLNSAIIYDRD 106
DR +S +I+ ++
Sbjct: 481 ERILDRCSSILIHGKE 496
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 38 DYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGT--RTPMISDKHYEIIMKNA- 94
+ A+L EL C ++ KE ++ +++++E +N NK + + P ++ + ++MK A
Sbjct: 428 ESALLKCIELCCGSV-KEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAP 486
Query: 95 ----DRLNSAIIYDRD 106
DR +S +I+ ++
Sbjct: 487 ERILDRCSSILIHGKE 502
>pdb|3KLS|X Chain X, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|Y Chain Y, Structure Of Complement C5 In Complex With Ssl7
pdb|3PRX|X Chain X, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|Y Chain Y, Structure Of Complement C5 In Complex With Cvf And Ssl7
Length = 231
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 144 IHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYG 190
++GED+DA+I+++ + E+ D +R ++ + S YG
Sbjct: 141 VNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGTSKYG 187
>pdb|1V1P|A Chain A, The Structure Ssl From Staphylococcus Aureus From An
Orthorhombic Crystal Form
Length = 211
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 144 IHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYG 190
++GED+DA+I+++ + E+ D +R ++ + S YG
Sbjct: 121 VNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGTSKYG 167
>pdb|1V1O|A Chain A, Staphylococcal Superantigen-Like Protein 7
pdb|1V1O|B Chain B, Staphylococcal Superantigen-Like Protein 7
pdb|1V1P|B Chain B, The Structure Ssl From Staphylococcus Aureus From An
Orthorhombic Crystal Form
Length = 213
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 144 IHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYG 190
++GED+DA+I+++ + E+ D +R ++ + S YG
Sbjct: 123 VNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGTSKYG 169
>pdb|1JRB|A Chain A, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRB|B Chain B, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 24 AAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS-----EVIEELYNMVNKETGTR 78
AAE A + ++ D++ + L CPN+ + + + ++++E++ K G +
Sbjct: 105 AAENIAMLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFFTKPLGVK 164
Query: 79 TPMISD-KHYEII 90
P D H++I+
Sbjct: 165 LPPYFDLVHFDIM 177
>pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1JUE|A Chain A, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|1JUE|B Chain B, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|2BSL|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BSL|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BX7|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
pdb|2BX7|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
Length = 311
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 24 AAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS-----EVIEELYNMVNKETGTR 78
AAE A + ++ D++ + L CPN+ + + + ++++E++ K G +
Sbjct: 105 AAENIAMLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFFTKPLGVK 164
Query: 79 TPMISD-KHYEII 90
P D H++I+
Sbjct: 165 LPPYFDLVHFDIM 177
>pdb|1JQV|A Chain A, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQV|B Chain B, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 24 AAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS-----EVIEELYNMVNKETGTR 78
AAE A + ++ D++ + L CPN+ + + + ++++E++ K G +
Sbjct: 105 AAENIAMLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFFTKPLGVK 164
Query: 79 TPMISD-KHYEII 90
P D H++I+
Sbjct: 165 LPPYFDLVHFDIM 177
>pdb|1JRC|A Chain A, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRC|B Chain B, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 24 AAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS-----EVIEELYNMVNKETGTR 78
AAE A + ++ D++ + L CPN+ + + + ++++E++ K G +
Sbjct: 105 AAENIAMLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFFTKPLGVK 164
Query: 79 TPMISD-KHYEII 90
P D H++I+
Sbjct: 165 LPPYFDLVHFDIM 177
>pdb|1JQX|A Chain A, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQX|B Chain B, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 24 AAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS-----EVIEELYNMVNKETGTR 78
AAE A + ++ D++ + L CPN+ + + + ++++E++ K G +
Sbjct: 105 AAENIAMLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFFTKPLGVK 164
Query: 79 TPMISD-KHYEII 90
P D H++I+
Sbjct: 165 LPPYFDLVHFDIM 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,805,824
Number of Sequences: 62578
Number of extensions: 234760
Number of successful extensions: 950
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 920
Number of HSP's gapped (non-prelim): 34
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)