BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15804
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48591|RIR1_DROME Ribonucleoside-diphosphate reductase large subunit OS=Drosophila
melanogaster GN=RnrL PE=1 SV=2
Length = 812
Score = 243 bits (619), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 120/188 (63%), Positives = 145/188 (77%), Gaps = 4/188 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
V ITL+VI GLY GVTT +LDNLAAE AA HPDYA+L + NLHKETKK +
Sbjct: 48 VTITLQVINGLYCGVTTQELDNLAAEIAAGL-TCNHPDYAIL-AARIAVSNLHKETKKAF 105
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S+V E+LYN VNKET + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFKTLERS
Sbjct: 106 SDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERS 165
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K NG++ ERPQHMLMRVA+GIHGEDIDAA+ETYNLLSE+YFTHA+ + A +
Sbjct: 166 YLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVETYNLLSERYFTHASPTLFA--AATNR 223
Query: 181 PRFSSFSL 188
P+ SS L
Sbjct: 224 PQLSSCFL 231
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus
GN=Rrm1 PE=1 SV=2
Length = 792
Score = 223 bits (569), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/192 (61%), Positives = 148/192 (77%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
+IT+KVI+GLY GVTTV+LD LAAETAA KHPDYA+L + NLHKETKK +
Sbjct: 37 AQITMKVIQGLYSGVTTVELDTLAAETAATLT-TKHPDYAIL-AARIAVSNLHKETKKVF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S+V+E+LYN +N G +PM++ +I+M N DRLNSAIIYDRDF+YN+FGFKTLERS
Sbjct: 95 SDVMEDLYNYINPHNGRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSEK+FTHA+ + +A +
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSEKWFTHASPTLF--NAGTNR 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQLSSCFLLSMK 224
>sp|P36602|RIR1_SCHPO Ribonucleoside-diphosphate reductase large chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc22 PE=1 SV=2
Length = 811
Score = 223 bits (569), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/188 (62%), Positives = 149/188 (79%), Gaps = 4/188 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
VEIT KVI G+YPGVTT++LDNLAAETAA KHPDYA+L + NLHK+T+K +
Sbjct: 37 VEITQKVISGVYPGVTTIELDNLAAETAATMT-TKHPDYAIL-AARIAVSNLHKQTEKVF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S V+++L++ VN +T PMISDK Y+I+MK+ D L+SAIIYDRDF YNFFGFKTLERS
Sbjct: 95 STVVQQLHDYVNPKTDKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL++ +G+V ERPQHM+MRVAVGIHGEDI+AAIETYNL+S++YFTHA+ + +A +
Sbjct: 155 YLLRIDGKVAERPQHMIMRVAVGIHGEDIEAAIETYNLMSQRYFTHASPTLF--NAGTPR 212
Query: 181 PRFSSFSL 188
P+ SS L
Sbjct: 213 PQLSSCFL 220
>sp|P21524|RIR1_YEAST Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR1 PE=1
SV=2
Length = 888
Score = 222 bits (566), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 108/192 (56%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
V++T ++I G+Y GVTT++LDNLAAET A+ + HPDYA L + NLHK+T K +
Sbjct: 37 VKVTQRIISGVYEGVTTIELDNLAAETCAYMTTV-HPDYATL-AARIAISNLHKQTTKQF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S+V+E+LY VN TG PMISD Y I+M+N D+LNSAI+YDRDF Y++FGFKTLERS
Sbjct: 95 SKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL++ NG+V ERPQH++MRVA+GIHG DI+AA+ETYNL+S KYFTHA+ + +A +
Sbjct: 155 YLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLF--NAGTPK 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQMSSCFLVAMK 224
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens
GN=RRM1 PE=1 SV=1
Length = 792
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/192 (60%), Positives = 148/192 (77%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
+IT+KVI+GLY GVTTV+LD LAAETAA KHPDYA+L + NLHKETKK +
Sbjct: 37 AQITMKVIQGLYSGVTTVELDTLAAETAATLT-TKHPDYAIL-AARIAVSNLHKETKKVF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S+V+E+LYN +N G +PM++ +I++ N DRLNSAIIYDRDF+YN+FGFKTLERS
Sbjct: 95 SDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+ + +A +
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLF--NAGTNR 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQLSSCFLLSMK 224
>sp|P79732|RIR1_DANRE Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio
GN=rrm1 PE=2 SV=1
Length = 794
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/192 (63%), Positives = 147/192 (76%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
+IT+KVI+GLY GVTTV+LD LAAETAA KHPDYA+L + NLHKETKK +
Sbjct: 37 TQITMKVIQGLYSGVTTVELDTLAAETAATST-TKHPDYAIL-AARIAVSNLHKETKKVF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
SEV+E+LYN VN +PMIS + +I++ N DRLNSAIIYDRDF+YNFFGFKTLERS
Sbjct: 95 SEVMEDLYNYVNPLNSRHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K NG+V ERPQHMLMRV+VGIH EDI AAIETYNLLSEK+FTHA+ + +A +
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIAAAIETYNLLSEKWFTHASPTLF--NAGTNR 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQLSSCFLLAMK 224
>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii
GN=RRM1 PE=2 SV=1
Length = 792
Score = 220 bits (560), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 116/192 (60%), Positives = 147/192 (76%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
+IT+KVI+GLY GVTTV+LD LAAETAA KHPDYA+L + NLHKE KK +
Sbjct: 37 AQITMKVIQGLYSGVTTVELDTLAAETAATLT-TKHPDYAIL-AARIAVSNLHKEAKKVF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S+V+E+LYN +N G +PM++ +I++ N DRLNSAIIYDRDF+YN+FGFKTLERS
Sbjct: 95 SDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+ + +A +
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLF--NAGTNR 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQLSSCFLLSMK 224
>sp|Q9UW15|RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2
Length = 929
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/192 (57%), Positives = 140/192 (72%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
V IT KVI G+Y GVTT QLD+LAAETAA Y + HPDYA+L + NLHK+TKK W
Sbjct: 37 VAITQKVISGVYGGVTTAQLDDLAAETAA-YMTVTHPDYAIL-AARIAVSNLHKQTKKQW 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S VI ELYN VN TG +PMI+ YE +M++ D +SAI+YDRDFNY +FGFKTLERS
Sbjct: 95 SLVISELYNYVNPRTGKHSPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K +G++ ERPQHM+MRVAVGI G+D++ IETYNL+S K FTHA+ + +A +
Sbjct: 155 YLLKLDGQIAERPQHMIMRVAVGIWGDDVERVIETYNLMSLKTFTHASPTLF--NAGTPQ 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQLSSCFLVDMK 224
>sp|P21672|RIR3_YEAST Ribonucleoside-diphosphate reductase large chain 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR3 PE=1
SV=4
Length = 869
Score = 214 bits (546), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/192 (54%), Positives = 143/192 (74%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
V++T ++I G+Y GVTTV+LDNLAAET A+ + HPDYA L + NLHK+T K +
Sbjct: 37 VKVTQRIISGVYSGVTTVELDNLAAETCAYMTTV-HPDYATL-AARIAISNLHKQTTKQF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
S+VIE+L++ +N TG PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFKTLERS
Sbjct: 95 SKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL++ NG V ERPQH++MRVA+GIHG DI++ ++TYNL+S +YFTHA+ + +A +
Sbjct: 155 YLLRLNGEVAERPQHLVMRVALGIHGSDIESVLKTYNLMSLRYFTHASPTLF--NAGTPH 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQMSSCFLIAMK 224
>sp|P20503|RIR1_VACCC Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Copenhagen) GN=I4L PE=2 SV=1
Length = 771
Score = 213 bits (543), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/188 (58%), Positives = 140/188 (74%), Gaps = 3/188 (1%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
++I +KVI+G+Y GVTTV+LD LAAE AA +HPDYA+L + NLHKETKK +
Sbjct: 37 IKIAMKVIQGIYNGVTTVELDTLAAEIAATCTT-QHPDYAIL-AARIAVSNLHKETKKLF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
SEV+E+L+N VN + G +P+IS +I+ K D+LNS IIY+RDF+YN+FGFKTLE+S
Sbjct: 95 SEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K N ++VERPQHMLMRVAVGIH DID+AIETYNLLSEK+FTHA+ + SR
Sbjct: 155 YLLKINNKIVERPQHMLMRVAVGIHQWDIDSAIETYNLLSEKWFTHASPTLFNA-GTSRH 213
Query: 181 PRFSSFSL 188
S F L
Sbjct: 214 QMSSCFLL 221
>sp|Q76RD8|RIR1_VACCA Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Ankara) GN=MVA065L PE=2 SV=1
Length = 771
Score = 213 bits (543), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/188 (58%), Positives = 140/188 (74%), Gaps = 3/188 (1%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
++I +KVI+G+Y GVTTV+LD LAAE AA +HPDYA+L + NLHKETKK +
Sbjct: 37 IKIAMKVIQGIYNGVTTVELDTLAAEIAATCTT-QHPDYAIL-AARIAVSNLHKETKKLF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
SEV+E+L+N VN + G +P+IS +I+ K D+LNS IIY+RDF+YN+FGFKTLE+S
Sbjct: 95 SEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K N ++VERPQHMLMRVAVGIH DID+AIETYNLLSEK+FTHA+ + SR
Sbjct: 155 YLLKINNKIVERPQHMLMRVAVGIHQWDIDSAIETYNLLSEKWFTHASPTLFNA-GTSRH 213
Query: 181 PRFSSFSL 188
S F L
Sbjct: 214 QMSSCFLL 221
>sp|P12848|RIR1_VACCW Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Western Reserve) GN=VACWR073 PE=1 SV=1
Length = 771
Score = 213 bits (543), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/188 (58%), Positives = 140/188 (74%), Gaps = 3/188 (1%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
++I +KVI+G+Y GVTTV+LD LAAE AA +HPDYA+L + NLHKETKK +
Sbjct: 37 IKIAMKVIQGIYNGVTTVELDTLAAEIAATCTT-QHPDYAIL-AARIAVSNLHKETKKLF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
SEV+E+L+N VN + G +P+IS +I+ K D+LNS IIY+RDF+YN+FGFKTLE+S
Sbjct: 95 SEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K N ++VERPQHMLMRVAVGIH DID+AIETYNLLSEK+FTHA+ + SR
Sbjct: 155 YLLKINNKIVERPQHMLMRVAVGIHQWDIDSAIETYNLLSEKWFTHASPTLFNA-GTSRH 213
Query: 181 PRFSSFSL 188
S F L
Sbjct: 214 QMSSCFLL 221
>sp|P32984|RIR1_VAR67 Ribonucleoside-diphosphate reductase large subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=I4L PE=2 SV=1
Length = 771
Score = 209 bits (533), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 107/188 (56%), Positives = 139/188 (73%), Gaps = 3/188 (1%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
++I +KVI+G+Y GVTTV+LD L AE AA +HPDYA+L + NLHKETKK +
Sbjct: 37 IKIAMKVIQGIYNGVTTVELDTLTAEIAATCTT-QHPDYAIL-AARIAVSNLHKETKKLF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
SEV+++L+N VN + G +P+IS +++ K D+LNS IIY+RDF+YN+FGFKTLE+S
Sbjct: 95 SEVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K N ++VERPQHMLMRVAVGIH DID+AIETYNLLSEK+FTHA+ + SR
Sbjct: 155 YLLKINNKIVERPQHMLMRVAVGIHQWDIDSAIETYNLLSEKWFTHASPTLFNA-GTSRH 213
Query: 181 PRFSSFSL 188
S F L
Sbjct: 214 QMSSCFLL 221
>sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large subunit
OS=Caenorhabditis elegans GN=rnr-1 PE=3 SV=1
Length = 788
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 138/188 (73%), Gaps = 4/188 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
V + +KVI GLY GVTTV+LDNLAAETAA +HP+YA+L + NLHK+T K +
Sbjct: 43 VAVAIKVISGLYKGVTTVELDNLAAETAASMT-TQHPEYALL-AARIAVSNLHKKTNKVF 100
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
SEV++ L+ + TG PMISD+ + II KNAD+LNSAI+YDRD++Y +FGFKTLERS
Sbjct: 101 SEVMKTLHEFHHPHTGKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERS 160
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K N +VERPQ MLMRV++GIHG+DI +AIETYNL+SE+Y THA+ + +
Sbjct: 161 YLLKINKEIVERPQQMLMRVSIGIHGDDITSAIETYNLMSERYMTHASPTLFNSGTC--R 218
Query: 181 PRFSSFSL 188
P+ SS L
Sbjct: 219 PQMSSCFL 226
>sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis
thaliana GN=RNR1 PE=1 SV=1
Length = 816
Score = 206 bits (525), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 140/192 (72%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
V + KV G+Y GVTT QLD LAAETAA HPDYA L + NLHK TKK++
Sbjct: 37 VLVAQKVCAGVYKGVTTSQLDELAAETAAAMT-CNHPDYASL-AARIAVSNLHKNTKKSF 94
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
SE I++++ VN +G ++P+I+D +EIIM+NA RL+S IIYDRDF Y++FGFKTLERS
Sbjct: 95 SETIKDMFYHVNDRSGLKSPLIADDVFEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL+K G VVERPQHMLMRVAVGIH +DID+ I+TY+L+S+++FTHA+ + +A +
Sbjct: 155 YLLKVQGTVVERPQHMLMRVAVGIHKDDIDSVIQTYHLMSQRWFTHASPTLF--NAGTPR 212
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 213 PQLSSCFLVCMK 224
>sp|Q54Q71|RIR1_DICDI Ribonucleoside-diphosphate reductase large subunit OS=Dictyostelium
discoideum GN=rnrA PE=3 SV=1
Length = 870
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 138/192 (71%), Gaps = 4/192 (2%)
Query: 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
+E+ KV+ G++PGV T +LDNLAAETAA Y +HPDY +L + NLHK+T K++
Sbjct: 55 IEVAQKVVSGVFPGVKTTELDNLAAETAA-YMSTRHPDYGIL-AARISVSNLHKQTSKSF 112
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
E +++ Y +N ++ P++S + YEI+MK+ +RL S I Y RDF+Y+FFGFKTLERS
Sbjct: 113 VETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERS 172
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
YL + NG++VERPQHMLMRV++GIHGED+++AI TY LSEK FTHA + +A + S
Sbjct: 173 YLHRINGKIVERPQHMLMRVSIGIHGEDLESAINTYKRLSEKLFTHATPTLF--NAGTPS 230
Query: 181 PRFSSFSLYGVR 192
P+ SS L ++
Sbjct: 231 PQMSSCFLVQMK 242
>sp|P50648|RIR1_PLAF4 Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate Dd2) GN=RNR1 PE=2 SV=1
Length = 806
Score = 170 bits (430), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 126/190 (66%), Gaps = 5/190 (2%)
Query: 3 ITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSE 62
+T VI G+Y G+ T +LD LAA+T A Y HPD+++L + NLHK T +E
Sbjct: 38 VTQGVINGMYSGIKTCELDELAAQTCA-YMATTHPDFSIL-AARITTDNLHKNTSDDVAE 95
Query: 63 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYL 122
V E LY + G +IS + Y+ I+ + DRLN I Y RDFNY++FGFKTLERSYL
Sbjct: 96 VAEALYTYKDVR-GRPASLISKEVYDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSYL 154
Query: 123 MKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPR 182
++ N +++ERPQH+LMRV++GIH +DID A+ETY+L+S+KYFTHA + ++ + P+
Sbjct: 155 LRINNKIIERPQHLLMRVSIGIHIDDIDKALETYHLMSQKYFTHATPTLF--NSGTPRPQ 212
Query: 183 FSSFSLYGVR 192
SS L ++
Sbjct: 213 MSSCFLLSMK 222
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 39 YAVLWLPEL-------------LCPNLHKETKKTWSEVIEELYNMVNKET-GTRTPMISD 84
YAV W+P+L +CPN +TW E E+LY +E G +T + D
Sbjct: 328 YAV-WVPDLFMKRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYEEENMGKKTVLAQD 386
Query: 85 KHYEII 90
+ I+
Sbjct: 387 LWFAIL 392
>sp|O61065|RIR1_CRYPV Ribonucleoside-diphosphate reductase large chain OS=Cryptosporidium
parvum GN=RNR1 PE=3 SV=2
Length = 803
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 121/190 (63%), Gaps = 7/190 (3%)
Query: 3 ITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSE 62
+T VI GLY G+ T +LD LA++T A Y H D++ L + NLHK T +
Sbjct: 38 VTQAVINGLYSGIKTSELDELASQTCA-YMAATHNDFSKL-AARISTSNLHKNTSSDIGD 95
Query: 63 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYL 122
V +LYN + + G P+IS Y+ IM+N +R+NS I + +DF Y++F FKTLERSYL
Sbjct: 96 VASQLYNFKDNQ-GCPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYL 154
Query: 123 MKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPR 182
+K + +VVERPQH+LMRV+ GIH DI+AA+ETY LLS+KYFTHA + S +PR
Sbjct: 155 LKIDNKVVERPQHLLMRVSCGIHCGDIEAALETYELLSQKYFTHATPTLFN----SGTPR 210
Query: 183 FSSFSLYGVR 192
S + +R
Sbjct: 211 PQMSSCFLLR 220
>sp|P50647|RIR1_PLAFG Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate FCR-3 / Gambia) GN=RNR1 PE=3 SV=1
Length = 804
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 122/190 (64%), Gaps = 5/190 (2%)
Query: 3 ITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSE 62
+T VI G+Y + T +LD LAA+T A Y HPD+++L + NLHK T +E
Sbjct: 39 VTQGVINGMYSSIKTCELDELAAQTCA-YMATTHPDFSIL-AARITTDNLHKNTSDDVAE 96
Query: 63 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYL 122
V E LY + G +IS + Y+ I+ + RLN I Y FNY++FGFKTLERSYL
Sbjct: 97 VAEALYTYKDGR-GRPASLISKEVYDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYL 155
Query: 123 MKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPR 182
++ N +++ERPQH+LMRV++GIH +DID A+ETY+L+S+KYFTHA + ++ + P+
Sbjct: 156 LRINNKIIERPQHLLMRVSIGIHIDDIDKALETYHLMSQKYFTHATPTLF--NSGTPRPQ 213
Query: 183 FSSFSLYGVR 192
SS L ++
Sbjct: 214 MSSCFLLSMK 223
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 39 YAVLWLPEL-------------LCPNLHKETKKTWSEVIEELYNMVNKET-GTRTPMISD 84
YAV W+P+L +CPN +TW E E+LY +E G +T + D
Sbjct: 329 YAV-WVPDLFMKRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYEEENMGKKTVLAQD 387
Query: 85 KHYEII 90
+ I+
Sbjct: 388 LWFAIL 393
>sp|O15909|RIR1_TRYBB Ribonucleoside-diphosphate reductase large subunit OS=Trypanosoma
brucei brucei GN=RNR1 PE=2 SV=1
Length = 838
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 118/189 (62%), Gaps = 9/189 (4%)
Query: 9 KGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELY 68
+G+ G++T LD L AETAA Y KHPDY +L L LHK T ++ + L+
Sbjct: 50 EGVREGMSTSMLDELLAETAA-YCVTKHPDYGLL-AGRLAVTALHKTTTESVLDSFRVLH 107
Query: 69 NMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMK-NNG 127
V++ T P+IS++ ++I K++ L I Y+RDF++ +FG+KTLERSYL++ + G
Sbjct: 108 EHVSQATKRHAPLISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVHKG 167
Query: 128 R----VVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRF 183
R VVERPQ M +RVA+GIHGED++ ETY+ +S+ +FTHA + +A + P+
Sbjct: 168 RGVMEVVERPQQMFLRVALGIHGEDLERVKETYDYMSQGFFTHATPTLF--NAGTPFPQM 225
Query: 184 SSFSLYGVR 192
SS L +R
Sbjct: 226 SSCFLVAMR 234
>sp|Q7T6Y8|RIR1_MIMIV Ribonucleoside-diphosphate reductase large subunit OS=Acanthamoeba
polyphaga mimivirus GN=RNR1 PE=3 SV=2
Length = 881
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 109/195 (55%), Gaps = 17/195 (8%)
Query: 6 KVIKGLYPGVTTVQ----LDNLAAETAA--FYEPLKHPDYAVLWLPELLCPNLHKETKKT 59
K+ K ++P + ++ +DN TA+ + +P AV W+ L NLH T
Sbjct: 106 KMTKNIFPKLKSINTIKDIDNQIISTASEMVTDHYDYPKIAV-WI---LMTNLHDNTSDD 161
Query: 60 WSEVIEELYNMVNK-ETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLE 118
+ E E+LYN NK E+ P+IS+ Y I K+ +N I YDRD+N FGF+TLE
Sbjct: 162 FLETAEKLYN--NKSESNKNAPIISENIYNFIKKHIKEINRVIRYDRDYNLTIFGFRTLE 219
Query: 119 RSYLMKNNGRVVERPQHMLMRVAVGIH--GEDIDAAIETYNLLSEKYFTHAADVMLRTHA 176
+SYL + N ++VERPQH+ MRVA+ +H D+D ETY LS+ YFTHA + +A
Sbjct: 220 KSYLKRINKKIVERPQHLFMRVAITLHYRKNDLDRIFETYKYLSKGYFTHATPTLF--NA 277
Query: 177 MSRSPRFSSFSLYGV 191
+ + SS L G+
Sbjct: 278 GTTHEQLSSCFLLGI 292
>sp|Q8SR37|RIR1_ENCCU Ribonucleoside-diphosphate reductase large chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU10_0920 PE=3 SV=1
Length = 768
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 12/187 (6%)
Query: 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
E+ +++ G +T + + +ETAA KHP+Y + ++ +H+ T ++
Sbjct: 40 ELVERIVSGWCEDMTRKETIDYCSETAASM-ITKHPEYGQI-SSRIIVSYIHEITMDSFV 97
Query: 62 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
E I+ + K G M+S++ Y II+++ + + I Y+ DF +++FG TL +SY
Sbjct: 98 EKIK----YIQKHRG----MVSEEMYGIILEHGETIEGMINYENDFLFSYFGILTLMKSY 149
Query: 122 LMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
L+K ++ERPQ M MRVA+ IH D + E YNLLS YFTHA + ++ ++P
Sbjct: 150 LIKVGEEIIERPQDMFMRVALQIHKTDFEKVREVYNLLSGHYFTHATPTLY--NSCLKNP 207
Query: 182 RFSSFSL 188
+ +S L
Sbjct: 208 QLASCFL 214
>sp|P0C8H9|RIR1_ASFWA Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-055 PE=3 SV=1
Length = 778
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 15/161 (9%)
Query: 36 HPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNAD 95
H DY+ L L LH+ T ++S+ V + +S + +++ K
Sbjct: 48 HYDYSTL-AARLSVYQLHQSTASSFSKA-------VRLQAAQSCSRLSPQFVDVVYKYKA 99
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGE----DID 150
+S I Y+RD+ + G +T++ SYL+KN +G ++ERPQ MRVA+ I+G +I
Sbjct: 100 IFDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGKVVNIK 159
Query: 151 AAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGV 191
+ TY+LLS+ THA+ M +A ++ P+ SS L V
Sbjct: 160 MILLTYDLLSQHIITHASPTMF--NAGTKKPQLSSCFLLNV 198
>sp|P42491|RIR1_ASFB7 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-045 PE=3 SV=1
Length = 778
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 36 HPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNAD 95
H DY+ L L LH+ T ++S+ V + +S + +++ K
Sbjct: 48 HYDYSTL-AARLSVYQLHQSTASSFSKA-------VRLQAAQSCSRLSPQFVDVVYKYKA 99
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGE----DID 150
+S I Y+RD+ + G +T++ SYL+KN +G ++ERPQ MRVA+ I+G +I
Sbjct: 100 IFDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGKVVNIK 159
Query: 151 AAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGV 191
+ TY+LLS THA+ M +A ++ P+ SS L V
Sbjct: 160 MILLTYDLLSRHVITHASPTMF--NAGTKKPQLSSCFLLNV 198
>sp|P0C8H8|RIR1_ASFP4 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-057 PE=3 SV=1
Length = 778
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 36 HPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNAD 95
H DY+ L L LH+ T ++S+ V + +S + +++ K
Sbjct: 48 HYDYSTL-AARLSVYQLHQSTASSFSKA-------VRLQAAQSCSRLSPQFVDVVYKYKA 99
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGE----DID 150
+S I Y RD+ + G +T++ SYL+KN +G ++ERPQ MRVA+ I+G +I
Sbjct: 100 IFDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGKVVNIK 159
Query: 151 AAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGV 191
+ TY+LLS THA+ M +A ++ P+ SS L V
Sbjct: 160 MILLTYDLLSRHIITHASPTMF--NAGTKKPQLSSCFLLNV 198
>sp|P26685|RIR1_ASFM2 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-053 PE=3 SV=1
Length = 779
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 36 HPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNAD 95
H DY+ L L LH+ T ++S+ V+ + +S +++ K
Sbjct: 49 HYDYSTL-AARLSVYLLHQSTASSFSKA-------VSLQAAQSCSRLSSHFVDVVYKYKA 100
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGE----DID 150
+S I Y RD+ + G +T++ SYL+KN +G ++ERPQ MRVA+ IHG ++
Sbjct: 101 IFDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIHGMGRVVNMK 160
Query: 151 AAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGV 191
+ TY+LLS THA+ M +A ++ P+ SS L V
Sbjct: 161 MILLTYDLLSRHVITHASPTMF--NAGTKKPQLSSCFLLNV 199
>sp|P0C8H7|RIR1_ASFK5 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-057
PE=3 SV=1
Length = 779
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 36 HPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNAD 95
H DY+ L L LH+ T ++SE V+ + +S + +++ K
Sbjct: 49 HYDYSTL-AARLSVYLLHQSTASSFSEA-------VSLQAAQSCSRLSPQFVDVVYKYKA 100
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGE----DID 150
+S I Y RD+ G +T++ SYL+KN +G ++ERPQ MRVA+ I+G ++
Sbjct: 101 IFDSYIDYSRDYKLTLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGRVVNMK 160
Query: 151 AAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGV 191
+ TY+LLS THA+ M +A ++ P+ SS L V
Sbjct: 161 MILLTYDLLSRHVITHASPTMF--NAGTKKPQLSSCFLLNV 199
>sp|Q6R7H4|RIR1_OSHVF Ribonucleoside-diphosphate reductase large subunit OS=Ostreid
herpesvirus 1 (isolate France) PE=3 SV=1
Length = 835
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 12/163 (7%)
Query: 36 HPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM------ISDKHYEI 89
HPDYA L + T KT+++ + + V + G R+PM +SD+ +
Sbjct: 81 HPDYAFL-AGRVSAYMTQINTPKTFTDAVYGIQMAVGETNGFRSPMKPVKGGLSDEIVDF 139
Query: 90 IMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDI 149
+ ++ RL+ I RD+++N+ G L +K N ++ ERPQ++ MRVA+ +
Sbjct: 140 VNEHGARLDGMIDDVRDYSHNYMGITGLLNGVAIKVNKKLYERPQYVFMRVAMAMTDLSS 199
Query: 150 DAAIE----TYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSL 188
+ A+E TY L+S + + A+ V+ S S S F L
Sbjct: 200 ETALEDIWQTYMLISGQCLSMASPVLF-NGGTSSSNTASCFLL 241
>sp|Q9PL93|RIR1_CHLMU Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=nrdA PE=3 SV=1
Length = 1047
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 3 ITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKET--KKTW 60
+T Y G+ ++ LA AA K PDYA + ELL ++KE +
Sbjct: 274 LTDMAFSNFYSGIKESEV-VLACIMAARANIEKEPDYAFV-AAELLLDVVYKEALDRSRG 331
Query: 61 SEVIEELYNMVNKETGTRTPMISDKH-YEIIMKNA---DRLNSAIIYDRDFNYNFFGFKT 116
E +E++Y ++ R M D + +KN D L +A+ RD +++ G +
Sbjct: 332 DEDLEQVY----RDHFKRYIMEGDSYRLNPELKNLFDLDALANAMDLSRDLQFSYMGIQN 387
Query: 117 LERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDA---AIETYNLLSEKYFTHAADVMLR 173
L Y ++GR +E PQ MRVA+G+ ++ D AI YNLLS +T A +
Sbjct: 388 LYDRYFNHDDGRRLETPQIFWMRVAMGLALKEQDKTYWAITFYNLLSTFRYTPATPTLFN 447
Query: 174 THAMSRSPRFSSFSLYGVR 192
+ R + SS L V+
Sbjct: 448 SGM--RHSQLSSCYLSTVQ 464
>sp|P55982|RIR1_HELPY Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=nrdA PE=3 SV=1
Length = 788
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 97 LNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGI---HGEDIDAA 152
LNS I +RDF +N+ G KTL YL+K+ N +E PQHM M +A+ + E A
Sbjct: 125 LNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKIA 184
Query: 153 IETYNLLSE 161
+E Y +LS+
Sbjct: 185 LEFYEVLSK 193
>sp|Q9ZLF9|RIR1_HELPJ Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain J99) GN=nrdA PE=3 SV=1
Length = 788
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 97 LNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGEDID---AA 152
LNS I +RDF +N+ G KTL YL+K+ N +E PQHM M +A+ + + + A
Sbjct: 125 LNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQELNKIA 184
Query: 153 IETYNLLSE 161
+E Y +LS+
Sbjct: 185 LEFYEVLSK 193
>sp|O84834|RIR1_CHLTR Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=nrdA PE=3 SV=2
Length = 1047
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 11 LYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKET--KKTWSEVIEELY 68
Y G+ ++ LA AA K PDYA + ELL ++KE K ++E +E+ +
Sbjct: 282 FYSGIKESEV-VLACIMAARANIEKEPDYAFV-AAELLLDVVYKEALGKSKYAEDLEQAH 339
Query: 69 NMVNK----ETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMK 124
K E T KH + + D L A+ RD +++ G + L Y
Sbjct: 340 RDHFKRYIAEGDTYRLNAELKH----LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNH 395
Query: 125 NNGRVVERPQHMLMRVAVGIHGEDIDA---AIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
+ G +E PQ MRVA+G+ + D AI YNLLS +T A + + R
Sbjct: 396 HEGCRLETPQIFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGM--RHS 453
Query: 182 RFSSFSLYGVR 192
+ SS L V+
Sbjct: 454 QLSSCYLSTVQ 464
>sp|Q9Z6S5|RIR1_CHLPN Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
pneumoniae GN=nrdA PE=3 SV=1
Length = 1044
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 23/194 (11%)
Query: 11 LYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEV--IEELY 68
LY G+ ++ A AA + PDYA + ELL +L++ET S+ + E++
Sbjct: 280 LYSGIKEDEV-TTACIMAARANIEREPDYAFI-AAELLTSSLYEETLGCSSQDPNLSEIH 337
Query: 69 N------MVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYL 122
++N E P + D Y++ D L+ + RD +++ G + L Y
Sbjct: 338 KKHFKEYILNGEEYRLNPQLKD--YDL-----DALSEVLDLSRDQQFSYMGVQNLYDRYF 390
Query: 123 MKNNGRVVERPQHMLMRVAVGI---HGEDID-AAIETYNLLSEKYFTHAADVMLRTHAMS 178
+ GR +E Q MRV++G+ GE + AI YNLLS +T A + +
Sbjct: 391 NLHEGRRLETAQIFWMRVSMGLALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGM-- 448
Query: 179 RSPRFSSFSLYGVR 192
R + SS L V+
Sbjct: 449 RHSQLSSCYLSTVK 462
>sp|O66503|RIR1_AQUAE Ribonucleoside-diphosphate reductase subunit alpha OS=Aquifex
aeolicus (strain VF5) GN=nrdA PE=3 SV=1
Length = 801
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 23/191 (12%)
Query: 14 GVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEE------L 67
G+TT ++ L +TAA + PD+ LL +L+K+ + +
Sbjct: 49 GITTKEIQQLLIKTAAEKVSAERPDWTYT-AARLLLYDLYKDVAHLRGYSLRDDLGKYKP 107
Query: 68 YNMVNKETGTRTPMISDKHYEIIMKNA-----DRLNSAIIYDRDFNYNFFGFKTLERSYL 122
YN N + + + + E +++N ++L + I +RD + + G K L YL
Sbjct: 108 YNRKNFYSFVKEYVEKGIYGEYLLENYSEEDFNKLANYIKPERDLYFTYTGIKILYDRYL 167
Query: 123 MKNN-GRVVERPQHMLMRVAVGIH-----GEDIDAAIETYNLLSEKYFTHAADVMLRTHA 176
+++ GRV+E PQ M M +A+ + E + A + Y++LSE H V T
Sbjct: 168 VRDEEGRVIELPQEMYMLIAMTLAVPEKPEERLKWAKKFYDVLSE----HKVTVATPTLM 223
Query: 177 MSRSPRFSSFS 187
+R P F+ S
Sbjct: 224 NARRP-FTQLS 233
>sp|P32282|RIR1_BPT4 Ribonucleoside-diphosphate reductase subunit alpha
OS=Enterobacteria phage T4 GN=NRDA PE=3 SV=1
Length = 754
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 97 LNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGIHGED----ID 150
L S I ++RD + + G L+ YL+K+ G++ E PQ M + + +H ++ +
Sbjct: 129 LESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAFMTIGMALHQDEPVDRLK 188
Query: 151 AAIETYNLLSEKYFTHAADVMLRTHAMSRSP--RFSS 185
I Y +S + + +M A R+P +FSS
Sbjct: 189 HVIRFYEAVSTRQISLPTPIM----AGCRTPTRQFSS 221
>sp|O67899|PPSA_AQUAE Phosphoenolpyruvate synthase OS=Aquifex aeolicus (strain VF5)
GN=ppsA PE=3 SV=1
Length = 856
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 148 DIDAAIETY-NLLSEKYFTHAADVMLRTHAMSRSPRFSSFS 187
D++ AI+ Y N LSEKY THA DV +R+ A + +SF+
Sbjct: 103 DLEEAIKDYYNKLSEKYKTHAVDVAVRSSATAEDLPDASFA 143
>sp|P57276|RIR1_BUCAI Ribonucleoside-diphosphate reductase subunit alpha OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=nrdA PE=3 SV=1
Length = 761
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
Query: 11 LYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNM 70
Y +TT+ + + AA PDY + L +L K+ + +LY+
Sbjct: 49 FYNNITTINIHETIIKAAADLISQDTPDYQYM-AARLAIFHLRKKAYGQFEP--PKLYDH 105
Query: 71 VNKETGTRTPMISDKHYEIIMKNAD-----RLNSAIIYDRDFNYNFFGFKTLERSYLMKN 125
V K +K+ E ++KN ++NS I + RD N+++ K LE YL++N
Sbjct: 106 VKKMVDL------EKYDENLLKNYSYKEFLQMNSFIDHWRDMNFSYAAVKQLEGKYLIQN 159
Query: 126 --NGRVVERPQHMLMRVAVGIHGE 147
NG++ E Q + + ++ + +
Sbjct: 160 RVNGKIYESAQFLYILISACLFSQ 183
>sp|P37426|RIR1_SALTY Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=nrdA PE=3 SV=1
Length = 761
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
+++S I++DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>sp|P44469|PBP2_HAEIN Penicillin-binding protein 2 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=mrdA PE=3 SV=1
Length = 651
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 23 LAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMI 82
+ A A EP + P LL P+++ W +YN+VN GT
Sbjct: 492 MKAIEGAVLEPYEDP---------LLYPDINTPKVAAWEAAKRGMYNVVNAANGTGRKAF 542
Query: 83 SDKHYEIIMKNA 94
+D +Y + K+
Sbjct: 543 ADANYRVAGKSG 554
>sp|Q8K9W3|RIR1_BUCAP Ribonucleoside-diphosphate reductase subunit alpha OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=nrdA PE=3 SV=1
Length = 763
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 97 LNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
+NS + + RD N+++ K LE YL++N G++ E Q + + ++ +
Sbjct: 131 MNSFVDHRRDMNFSYAAVKQLEAKYLLQNRVTGQIYESAQFLYILISACL 180
>sp|P00452|RIR1_ECOLI Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Escherichia
coli (strain K12) GN=nrdA PE=1 SV=2
Length = 761
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 RLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGI 144
++++ I +DRD +++ K LE YL++N G + E Q + + VA +
Sbjct: 130 QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 180
>sp|Q93Z24|BGA17_ARATH Beta-galactosidase 17 OS=Arabidopsis thaliana GN=BGAL17 PE=2 SV=1
Length = 697
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 94 ADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQ-HMLMRVAVGIHGEDIDAA 152
AD + SA + FGF E SY+ K +G + P+ H +V V +D+D
Sbjct: 434 ADVITSANPISMESVGQMFGFLLYESSYIAKKSGNTLRIPKVHDRAQVFVSCLSQDVDVG 493
Query: 153 IETYNLLSEKY 163
+ Y +E++
Sbjct: 494 VLRYIGTTERW 504
>sp|Q5WEG7|FPG_BACSK Formamidopyrimidine-DNA glycosylase OS=Bacillus clausii (strain
KSM-K16) GN=mutM PE=3 SV=3
Length = 276
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 16 TTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIE 65
T V L N+ + A F+ + HP+ L + NLHKE K+T E IE
Sbjct: 168 TVVGLGNIYVDEALFHAGI-HPERTASSLSKEEYHNLHKEIKRTLKEAIE 216
>sp|O31430|SKFH_BACSU Thioredoxin-like protein SkfH OS=Bacillus subtilis (strain 168)
GN=skfH PE=2 SV=2
Length = 141
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 39 YAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMI-SDKHYEIIMKNA-DR 96
Y +L+ + CPN H+ T K V++++ +M K G P I +K E+++ A DR
Sbjct: 31 YLLLYFWSMSCPNCHQLTDK----VLQDIKDMNVKVIGVHVPYIEEEKSMEVVLTYALDR 86
Query: 97 -LNSAIIYDRDF 107
L I+ D+++
Sbjct: 87 GLAIPIVLDQNY 98
>sp|Q3BAH3|YCF2_PHAAO Protein ycf2 OS=Phalaenopsis aphrodite subsp. formosana GN=ycf2-A
PE=3 SV=1
Length = 2290
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLER- 119
S +E+Y+++ K I DK E + N+D ++ +R+F F T +R
Sbjct: 1480 SRTSKEIYSLIRKRKNVNGDWIDDK-IEFWVANSDSIDDE---EREFLVQFSALTTEKRI 1535
Query: 120 ----------SYLMKNNG--RVVERPQHMLMRVAVGIHGEDI 149
+L KN+ +++E+P + +R V IH +D+
Sbjct: 1536 DQILLSLTHSDHLSKNDSGYQMIEQPGSISLRYLVDIHQKDL 1577
>sp|Q67N41|GLYA_SYMTH Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=glyA PE=3 SV=1
Length = 412
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
E ++ K ++PG+ L ++ A A ++ L PDY C + K K
Sbjct: 241 EFAKEIDKAVFPGMQGGPLMHIIAAKAVAFKQLSDPDY------RAYCGQVVKNAKALAQ 294
Query: 62 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRL 97
++E Y +V T ++ + I ++A+ L
Sbjct: 295 ALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHL 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,141,888
Number of Sequences: 539616
Number of extensions: 2909484
Number of successful extensions: 7738
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7639
Number of HSP's gapped (non-prelim): 71
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)