Query psy15804
Match_columns 193
No_of_seqs 150 out of 1141
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:47:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1112|consensus 100.0 4E-56 8.6E-61 405.1 13.4 188 1-192 37-224 (796)
2 PLN02437 ribonucleoside--dipho 100.0 1.5E-47 3.3E-52 370.8 18.2 186 2-191 38-223 (813)
3 PHA02572 nrdA ribonucleoside-d 100.0 1.2E-45 2.5E-50 355.5 16.2 183 2-192 38-229 (753)
4 PRK06539 ribonucleotide-diphos 100.0 1.4E-45 3E-50 357.4 15.5 185 2-192 40-233 (822)
5 PRK07088 ribonucleotide-diphos 100.0 1.6E-44 3.5E-49 347.8 15.4 186 2-192 38-245 (764)
6 PRK12364 ribonucleotide-diphos 100.0 2.9E-44 6.3E-49 349.5 15.8 186 2-192 130-322 (842)
7 PRK09103 ribonucleotide-diphos 100.0 3.4E-44 7.4E-49 345.3 15.2 184 2-192 37-228 (758)
8 PRK09209 ribonucleotide-diphos 100.0 1.2E-43 2.7E-48 341.8 16.3 186 2-192 45-243 (761)
9 PRK07207 ribonucleotide-diphos 100.0 2.8E-43 6.1E-48 345.9 15.8 183 2-192 184-380 (965)
10 PRK12365 ribonucleotide-diphos 100.0 9E-43 2E-47 344.9 16.7 182 2-192 272-463 (1046)
11 PRK08447 ribonucleotide-diphos 100.0 1.1E-42 2.4E-47 335.6 15.5 180 2-192 37-222 (789)
12 COG0209 NrdA Ribonucleotide re 100.0 7.6E-30 1.6E-34 243.4 11.6 178 5-191 3-188 (651)
13 PRK07187 ribonucleotide-diphos 100.0 2.5E-29 5.3E-34 241.6 11.3 145 36-192 25-176 (721)
14 PRK07632 ribonucleotide-diphos 99.9 1.6E-26 3.5E-31 221.5 9.7 143 38-192 28-175 (699)
15 PRK08188 ribonucleotide-diphos 99.9 3.6E-26 7.7E-31 219.5 10.7 143 38-192 35-184 (714)
16 PRK06406 ribonucleotide-diphos 99.9 1.7E-25 3.6E-30 216.4 11.9 149 3-192 44-258 (771)
17 PRK07306 ribonucleotide-diphos 99.9 2.1E-25 4.5E-30 214.6 10.3 142 38-192 29-178 (720)
18 PF00317 Ribonuc_red_lgN: Ribo 99.9 4.2E-25 9E-30 160.0 4.6 72 108-181 2-83 (83)
19 PRK09102 ribonucleotide-diphos 99.9 4.7E-23 1E-27 195.2 6.3 89 97-192 9-97 (601)
20 PRK08665 ribonucleotide-diphos 99.8 6.6E-21 1.4E-25 184.5 7.2 88 103-192 6-103 (752)
21 TIGR02506 NrdE_NrdA ribonucleo 99.8 2.1E-20 4.5E-25 177.8 7.0 79 111-191 1-86 (617)
22 PRK08332 ribonucleotide-diphos 99.8 1.6E-19 3.6E-24 184.7 10.7 83 108-192 114-279 (1740)
23 TIGR02510 NrdE-prime ribonucle 99.8 8.9E-20 1.9E-24 172.1 6.6 83 103-192 12-96 (571)
24 PRK06948 ribonucleotide reduct 99.7 1E-17 2.2E-22 158.9 7.5 81 104-192 7-94 (595)
25 TIGR02504 NrdJ_Z ribonucleosid 99.7 7.3E-18 1.6E-22 159.6 5.7 76 116-192 1-85 (586)
26 PRK06556 vitamin B12-dependent 99.5 8E-14 1.7E-18 137.7 6.5 83 108-192 61-158 (953)
27 PRK08115 ribonucleotide-diphos 99.4 1.2E-13 2.6E-18 135.0 5.7 62 128-191 125-194 (858)
28 cd01679 RNR_I Class I ribonucl 98.8 2.9E-09 6.4E-14 98.7 3.8 42 133-174 1-42 (460)
29 PRK07562 ribonucleotide-diphos 98.5 3E-07 6.4E-12 93.0 6.8 60 131-192 103-205 (1220)
30 PF03477 ATP-cone: ATP cone do 97.0 0.00089 1.9E-08 48.2 4.0 48 2-55 39-90 (90)
31 cd01676 RNR_II_monomer Class I 42.4 37 0.00079 33.5 4.4 74 116-192 4-99 (658)
32 KOG2738|consensus 36.0 44 0.00096 30.2 3.5 42 2-43 134-176 (369)
33 PRK00464 nrdR transcriptional 34.7 54 0.0012 26.4 3.6 28 13-43 101-128 (154)
34 PF08359 TetR_C_4: YsiA-like p 29.7 33 0.00072 25.5 1.5 40 3-43 8-47 (133)
35 TIGR00756 PPR pentatricopeptid 24.1 1.3E+02 0.0027 16.0 3.6 22 146-167 13-34 (35)
36 PF08471 Ribonuc_red_2_N: Clas 21.3 2.2E+02 0.0047 21.2 4.4 52 109-160 17-87 (93)
No 1
>KOG1112|consensus
Probab=100.00 E-value=4e-56 Score=405.14 Aligned_cols=188 Identities=66% Similarity=1.006 Sum_probs=184.9
Q ss_pred ChhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCC
Q psy15804 1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTP 80 (193)
Q Consensus 1 ~~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~ 80 (193)
++|+++|++|+|.||||.||+++++++|++| ++.||||+.+| ||+.+++|||++.+.|+++++++|+++++.+|...|
T Consensus 37 v~vt~kvisG~y~gvTt~eldnlaaEtaA~m-tt~HPdYa~la-aRIavSnlHk~T~k~Fs~vi~~l~~~vn~~tgk~ap 114 (796)
T KOG1112|consen 37 VEVTQKVISGVYEGVTTVELDNLAAETAASM-TTKHPDYAILA-ARIAVSNLHKQTKKVFSEVIEDLHNHVNPHTGKHAP 114 (796)
T ss_pred HHHHHHHHhhhcCCchhHhHHHHHHHHHHHh-hcCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcCC
Confidence 3689999999999999999999999999999 99999999999 999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q psy15804 81 MISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLS 160 (193)
Q Consensus 81 ~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls 160 (193)
++++++++++.+|.++|+++|.|+||+.|+|||+++|+++||+|.+|++.|+||||+||||+++|++|++.|+++|++||
T Consensus 115 misd~~y~Iv~~n~d~lnsaIiYdrDf~y~yFGfkTLerSYLlking~v~ERPQhm~MRVa~gIH~~Die~aietYnLmS 194 (796)
T KOG1112|consen 115 MISDEVYNIVMENKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGEVAERPQHMLMRVALGIHGEDIEAAIETYNLMS 194 (796)
T ss_pred cccHHHHHHHHhhhhhhccceeeccccceeecchhHHHHHHHHHhCCchhcChHhHhHHhhhccchhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 161 EKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 161 ~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
.++|+|||||||| |||+++|||||||++|.
T Consensus 195 ~ryfTHAsPTLfn--agt~rPQlsSCFL~tmk 224 (796)
T KOG1112|consen 195 ERYFTHASPTLFN--AGTPRPQLSSCFLLTMK 224 (796)
T ss_pred hhhhccCCchhhh--cCCCCccccceEEEEec
Confidence 9999999999999 99999999999999875
No 2
>PLN02437 ribonucleoside--diphosphate reductase large subunit
Probab=100.00 E-value=1.5e-47 Score=370.84 Aligned_cols=186 Identities=57% Similarity=0.937 Sum_probs=178.5
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM 81 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~ 81 (193)
.++.++..+++|||||+||++++|++|+++ ++.||||+++| |||++.+|||++.++|++.++.+|+++...+|+..|+
T Consensus 38 ~~~~~~~~~~~~~~t~~el~~~~~~~a~~~-~~~~p~y~~~A-arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (813)
T PLN02437 38 LVAQKVCAGVYKGVTTSQLDELAAETAAAM-TTNHPDYAILA-ARIAVSNLHKNTKKSFSETVKDMYNHVNERSGLKAPL 115 (813)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHh-cccCCcHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhh
Confidence 467889999999999999999999999999 88899999999 9999999999999999998899999877777888899
Q ss_pred CChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q psy15804 82 ISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSE 161 (193)
Q Consensus 82 l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~ 161 (193)
+++++++|+.+|+++|++.|+++||+.|+|+|+++|+++||+|++|.++|+||+||||||+++|.++.+++++||++||+
T Consensus 116 ~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~l~~~~~~~a~~~Y~~ls~ 195 (813)
T PLN02437 116 IADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGKVVERPQHMLMRVSVGIHKDDIESAIKTYHLMSQ 195 (813)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcccccCCCHHHHHHHHHhheecCCCCcccCHHHHHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CccccCCccccccccCCCCCCccceeeecc
Q psy15804 162 KYFTHAADVMLRTHAMSRSPRFSSFSLYGV 191 (193)
Q Consensus 162 ~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~ 191 (193)
++|+||||||+| |||+++|||||||+++
T Consensus 196 ~~f~~aTPtL~n--aGt~~~qlsSCFl~~~ 223 (813)
T PLN02437 196 RWFTHASPTLFN--AGTPRPQLSSCFLICM 223 (813)
T ss_pred CCcccCCchhhc--CCCCCCCcceeeecCC
Confidence 999999999999 9999999999999986
No 3
>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=1.2e-45 Score=355.46 Aligned_cols=183 Identities=22% Similarity=0.330 Sum_probs=166.8
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHH-HHHHHHHhhhhccCccCC
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSE-VIEELYNMVNKETGTRTP 80 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~-~~~~~~~~~~~~~~~~~~ 80 (193)
+|+.++.+++++||||+||++++|++|+++|+..||||++|| ||+++.+|||++.++|.. .+.... +.+++.|
T Consensus 38 ~l~~~~~~~~~~~~~~~e~~~~~~~~a~~~~~~~~pdy~~~A-aRl~~~~l~k~~~~~~~~~~~~~~~-----~~~~~~~ 111 (753)
T PHA02572 38 ELEENSKIQLRDGMTTKDIQEILIKSAADLISVEEPDYQYVA-ARLLMFALRKQVYGQFEPPSFIDHI-----SKCVNEG 111 (753)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHhCCccCccHHHHH-HHHHHHHHHHHHhcccchhhHHHHH-----HHHHhcC
Confidence 688999999999999999999999999999778999999999 999999999999987742 223232 2356678
Q ss_pred CCChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc--CCeecCCHHHHHHHHHHHhhhcc-----HHHH
Q psy15804 81 MISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGIHGED-----IDAA 152 (193)
Q Consensus 81 ~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~--~g~~~E~pq~~~mrVA~~~~~~~-----~~~~ 152 (193)
++++++++ |+.+|+++|+++|+|+||+.|+|+|+++|++|||+|+ +|+++|+||+||||||+++|.++ ++++
T Consensus 112 ~~~~~~~~~y~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYllk~~~~~~~~E~pq~~~~rVA~~la~~e~~~~r~~~a 191 (753)
T PHA02572 112 KYDPEILSKYSAEEITYLESFIDHDRDFEFTYAGAMQLKEKYLVQDRSTGEIYETPQFAYMLIAMALHQDEPKEDRLEHV 191 (753)
T ss_pred chhHHHHHHcCHHHHHHHHHhhchhhccCCCHHHHHHHHHhhCCcCCCCCceecCHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999986 8999999999999999999999999999999999996 57899999999999999999854 7899
Q ss_pred HHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 153 IETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 153 ~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
++||++||+++|+||||||+| |||+++|||||||++|+
T Consensus 192 ~~fy~~ls~~~~~paTPtl~n--aGt~~~qlsSCFl~~v~ 229 (753)
T PHA02572 192 IRFYNAVSTRKISLPTPIMAG--VRTPTRQFSSCVVIESG 229 (753)
T ss_pred HHHHHHHHcCCcCCCChhhhc--CCCCCCcccceeeCCCC
Confidence 999999999999999999999 99999999999999875
No 4
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.4e-45 Score=357.37 Aligned_cols=185 Identities=22% Similarity=0.329 Sum_probs=168.6
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHH--HHHHHHHhhh---hccC
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSE--VIEELYNMVN---KETG 76 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~--~~~~~~~~~~---~~~~ 76 (193)
+|+.++..+++|||||+||+++++++|+++ +++||||+++| |||++.+|||++.++|.+ .++.++...+ .+.+
T Consensus 40 ~~~~~~~~~~~~~~tt~el~~~~~~~a~~~-~~~~pdy~~~A-arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (822)
T PRK06539 40 QLASELEITLFDGITTQQLDEAVIQVALQN-VKDDPAFDTVA-ARLLLKKIYKRVLGDYDSPEELQDLHANHFRRTIEKG 117 (822)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHh-hhhCccHHHHH-HHHHHHHHHHHHhccccchhHHHHHhHHHHHHHHHhh
Confidence 578899999999999999999999999999 67999999999 999999999999988864 3455544332 2568
Q ss_pred ccCCCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhh---ccHHHH
Q psy15804 77 TRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHG---EDIDAA 152 (193)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~---~~~~~~ 152 (193)
+..|++++++++ .+|+++|+++|||+||+.|+|+|+++|+++||+|+ +|+++|+||+||||||+++|. ++++++
T Consensus 118 ~~~~~~~~~~~~--~~~~~~l~~~i~~~rD~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a 195 (822)
T PRK06539 118 VAEGLLDSRLGG--LFDLERLAAALDPTRDELLKYIGVVTLNNRYGIRARNGDALEVPQYFWMRIAMGLSLNEDDPTSSA 195 (822)
T ss_pred ccccccCHHHhC--HhHHHHHHhhhChhhhcCCCHHHHHHHHhhccccCCCCCEeecHHHHHHHHHHHHHhhcCCcHHHH
Confidence 899999999887 37999999999999999999999999999999997 789999999999999999996 357899
Q ss_pred HHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 153 IETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 153 ~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
++||++||+++|+||||||+| |||+++|||||||++|+
T Consensus 196 ~~fY~~ls~~~f~~atPtL~N--aGt~~~qlsSCFl~~v~ 233 (822)
T PRK06539 196 LAFYEKMSKLEYLAAGSTLVN--AGTPYPQLSNCFVMEMQ 233 (822)
T ss_pred HHHHHHHHcCCeecCChhhhc--CCCCCCCCceeeeccCC
Confidence 999999999999999999999 99999999999999875
No 5
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.6e-44 Score=347.82 Aligned_cols=186 Identities=24% Similarity=0.274 Sum_probs=166.8
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhc------------CCCCCCCchhchHHHHhchHHHHHHhhhH--HH-HHHH
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFY------------EPLKHPDYAVLWLPELLCPNLHKETKKTW--SE-VIEE 66 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~------------~~~~~pdy~~lA~aRl~~~~l~k~~~~~f--~~-~~~~ 66 (193)
++..++..+++|||||+||++++|++|+++ +++.||||+++| ||+++.+|||++.+.| .. .+..
T Consensus 38 ~~~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~A-arl~~~~l~k~~~~~~~~~~~~~~~ 116 (764)
T PRK07088 38 ELELDSRIQFRDGMTTKEIQKSLIQTAIEKVIQNSKDNNGNNTKKTNPNWQYVA-ARLYVFDLYKEARINRHYNSFGYGD 116 (764)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHhccccccccccccCCccCccHHHHH-HHHHHHHHHHHHHhcccccccchhh
Confidence 467788999999999999999999999999 799999999999 9999999999997643 11 1344
Q ss_pred HHHhhhhccCccCCCCChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHh
Q psy15804 67 LYNMVNKETGTRTPMISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGI 144 (193)
Q Consensus 67 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~ 144 (193)
++..+ +.++..|++++++++ |+.+|+++|+++|+++||+.|+|+|+++|++|||+|+ +|.++|+||+||||||+++
T Consensus 117 ~~~~~--~~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rVA~~l 194 (764)
T PRK07088 117 YYELV--KKLVEEKLYGEYLLQNYSKEEIKELEKYIKPERDFLFNYEGLKLLADRYLVKGFNREILELPQERFMGIAMHL 194 (764)
T ss_pred HHHHH--HHHHhcchhhHHHHHhcCHHHHHHHHHHhhhccccCCCHHHHHHHHHhhCccCCCCCEeeCHHHHHHHHHHHH
Confidence 44332 346778999999886 8999999999999999999999999999999999997 8899999999999999999
Q ss_pred hhc-----cHHHHHHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 145 HGE-----DIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 145 ~~~-----~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
|.. +.++|++||++||+++|+||||||+| |||+++|||||||++|+
T Consensus 195 a~~e~~~~~~~~a~~fy~~ls~~~~~paTPtl~N--aGt~~~qlsSCFl~~v~ 245 (764)
T PRK07088 195 AIPEGKEKRVYYAKKFYDLLSELKATVATPTLSN--AGTPFYQLSSCFISVVD 245 (764)
T ss_pred hhhcccccHHHHHHHHHHHHHcCCeecCCcchhc--CCCCCCCccceeecCcc
Confidence 963 47899999999999999999999999 99999999999999875
No 6
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=2.9e-44 Score=349.54 Aligned_cols=186 Identities=18% Similarity=0.216 Sum_probs=164.6
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHH-HHHHHHHhhhhccCccCC
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSE-VIEELYNMVNKETGTRTP 80 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~-~~~~~~~~~~~~~~~~~~ 80 (193)
+++.++..+++|||||+||++++|++|+++++..||||+++| |||++.+|||++...+.+ .+..++..+ +.+++.|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~A-arl~~~~l~k~~~~~~~~~~~~~~~~~~--~~~~~~~ 206 (842)
T PRK12364 130 LLAEKFLSFCKPNMSEGESLAALIKAAVELTTQEAPDWEFIA-ARLLMLQFSKKLGKSLEKLGIHSFYDKI--KYLTEEG 206 (842)
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHhccccCCcHHHHH-HHHHHHHHHHHHhhhccccchHHHHHHH--HHHHhcC
Confidence 578999999999999999999999999999777789999999 999999999998643222 122222221 3366778
Q ss_pred CCChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhh----ccHHHHHH
Q psy15804 81 MISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHG----EDIDAAIE 154 (193)
Q Consensus 81 ~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~----~~~~~~~~ 154 (193)
++++++++ |+.+|+++|+++|+++||+.|+|+|+++|+++||+|+ +|+++|+||+||||||+++|. ++++++++
T Consensus 207 ~~~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rvA~~la~~e~~~~~~~~~~ 286 (842)
T PRK12364 207 LYGSYILEHYSREEIEEAAGFIDPERDKLFTYSGLDLLLKRYVIRTHSHEPLESPQEMFLGIALHLAMPEKQDRMGWVKR 286 (842)
T ss_pred chhHHHHHHhcHHHHHHHHHHhccccccCCCHHHHHHHHHhhCCcCCCCCeeeCHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 99999885 8999999999999999999999999999999999997 688999999999999999996 45789999
Q ss_pred HHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 155 TYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 155 ~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
||++||+++|+||||||+| |||+++|||||||++|+
T Consensus 287 fy~~ls~~~~~~aTPtl~N--agt~~~qlsSCFl~~v~ 322 (842)
T PRK12364 287 FYDMLSKLKVTMATPTLSN--ARKPFHQLSSCFIDTVP 322 (842)
T ss_pred HHHHHHcCCcccCCHHHhc--CCCCCCCeeeeEeCCCC
Confidence 9999999999999999999 99999999999998875
No 7
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=3.4e-44 Score=345.32 Aligned_cols=184 Identities=22% Similarity=0.307 Sum_probs=166.2
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM 81 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~ 81 (193)
+|+.++.++++|||||+||++++|++|+++|+..||||+++| |||++.+|||++.++|.+ ..+++.+ +..++.|+
T Consensus 37 ~l~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~pdy~~~A-arl~~~~l~k~~~~~~~~--~~~~~~~--~~l~~~~~ 111 (758)
T PRK09103 37 QVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLA-ARLAIFHLRKKAYGQFEP--PALYDHV--VKMVEMGK 111 (758)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHhCcccCCcHHHHH-HHHHHHHHHHHHHccccc--hhHHHHH--HHHHHcCc
Confidence 578899999999999999999999999999777999999999 999999999999988754 1222221 22455689
Q ss_pred CChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc--CCeecCCHHHHHHHHHHHhhhc-----cHHHHH
Q psy15804 82 ISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGIHGE-----DIDAAI 153 (193)
Q Consensus 82 l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~--~g~~~E~pq~~~mrVA~~~~~~-----~~~~~~ 153 (193)
+++++++ |+.+|+++|+++|+++||+.|+|+|+++|++|||+|+ +|+++|+||+||||||+++|.+ ++++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~i~~~rd~~f~y~~~~~l~~rYllk~~~~~~~~E~pq~~~~rVA~~la~~e~~~~~~~~~~ 191 (758)
T PRK09103 112 YDKHLLEDYTEEEFDQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPKETRLDYVK 191 (758)
T ss_pred hhHHHHHHcCHHHHHHHHHHhchhhccCCCHHHHHHHhhceeccccCCCCcccCHHHHHHHHHHHHhhccCccchHHHHH
Confidence 9999997 9999999999999999999999999999999999985 7889999999999999999964 478999
Q ss_pred HHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 154 ETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 154 ~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
+||++||+++|+||||+|+| ||++++|||||||++|+
T Consensus 192 ~fy~~ls~~~~~~~Tp~l~n--aGt~~~qlsSCFl~~v~ 228 (758)
T PRK09103 192 RFYDAVSTFKISLPTPIMSG--VRTPTRQFSSCVLIECG 228 (758)
T ss_pred HHHHHHHhCCcCCCCchhcC--CCCCCCCeeEEEecCCC
Confidence 99999999999999999999 99999999999999875
No 8
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.2e-43 Score=341.75 Aligned_cols=186 Identities=19% Similarity=0.215 Sum_probs=163.6
Q ss_pred hhhHHHHhccCC--CCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHH-H---HHHHHHHhhhhcc
Q psy15804 2 EITLKVIKGLYP--GVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS-E---VIEELYNMVNKET 75 (193)
Q Consensus 2 ~i~~~~~~~l~d--~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~-~---~~~~~~~~~~~~~ 75 (193)
.++.++..++++ ||||+||+++++++|++++++.||||+++| ||+++.+|||++.+.+. . .+..++..+ +.
T Consensus 45 ~~~~~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~p~y~~~A-arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~--~~ 121 (761)
T PRK09209 45 DYKRRVFNFVERKESVTADDLVDYLIREAEARVDLEEPEWTFFA-ARLYLNRLYKRASRNRFYDASEKYGSFVGLQ--ES 121 (761)
T ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccccCccHHHHH-HHHHHHHHHHHHHhcccccchhhhhhHHHHH--HH
Confidence 467788999965 999999999999999988789999999999 99999999999976421 0 111222111 34
Q ss_pred CccCCCCChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhcc-----
Q psy15804 76 GTRTPMISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGED----- 148 (193)
Q Consensus 76 ~~~~~~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~----- 148 (193)
++..|++++++++ |+.+|+++|+++|+++||+.|+|+|+++|+++||+|+ +|+++|+||+||||||+++|.++
T Consensus 122 ~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~mrVA~~la~~e~~~~r 201 (761)
T PRK09209 122 LAERGIYSNDLLKRYSKEELIEAGKMIDPERDKLFTYIGLYLLADRYLATDSDRNVYELPQERWLTIALYLMQNEPRERR 201 (761)
T ss_pred HHhcCcccHHHHHhcCHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhCCcCCCCCEEECHHHHHHHHHHHHHhhcccccH
Confidence 6677999999886 8999999999999999999999999999999999997 68999999999999999999764
Q ss_pred HHHHHHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 149 IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 149 ~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
++++++||++||+++|+||||||+| |||+++|||||||++|+
T Consensus 202 ~~~~~~fY~~Ls~~~~~~aTPtl~N--aGt~~~qlsSCFl~~v~ 243 (761)
T PRK09209 202 MQLVKEAYWALSNLYMTVATPTLAN--AGKVGGQLSSCFIDTVD 243 (761)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHhc--CCCCCCCeeeeEeCCcc
Confidence 7899999999999999999999999 99999999999998875
No 9
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.8e-43 Score=345.94 Aligned_cols=183 Identities=27% Similarity=0.399 Sum_probs=161.8
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhh--------HHHHHHHHHHhh--
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKT--------WSEVIEELYNMV-- 71 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~--------f~~~~~~~~~~~-- 71 (193)
+++.++.++++||||++|++++++++|+++ ++.||||+++| |||++.+|||++.+. +.+. ...|...
T Consensus 184 ~Lv~kt~r~LydGIttkEL~~aLI~~a~~~-~~~~p~y~~~A-arl~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 260 (965)
T PRK07207 184 PILAETLKNLYDGVPMDEVYKALILAARTL-IEKEPNYSYVT-ARLLLDTLRREALGFLGVPEEVTQAEM-ATRYAEYFP 260 (965)
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHh-cccCCCHHHHH-HHHHHHHHHHHHHhhccccccchhhHH-HHHHHHHHH
Confidence 578899999999999999999999999999 78899999999 999999999998652 1111 1222221
Q ss_pred -hhccCccCCCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhcc--
Q psy15804 72 -NKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGED-- 148 (193)
Q Consensus 72 -~~~~~~~~~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~-- 148 (193)
+.+.|+..|+|++++.+ .++++|+++|+++||+.|+|+|+++|++|||+|.+|.++|+||+||||||+++|..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~---~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~ 337 (965)
T PRK07207 261 AFIKKGIEAELLDPKLAQ---FDLERLGAALDPERDLQFTYLGLQTLYDRYFLHVDGTRIELPQAFFMRVAMGLALNEID 337 (965)
T ss_pred HHHHhccchhhhhHHHHH---hhHHHHHHHhhHHHhCCCCHHHHHHHHHhhcccCCCCeeecHHHHHHHHHHHHHHhccc
Confidence 12568889999998765 489999999999999999999999999999999888999999999999999999754
Q ss_pred -HHHHHHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 149 -IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 149 -~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
.++|++||++||+++|+||||||+| |||+++|||||||++|+
T Consensus 338 ~~~~a~~fy~~ls~~~~~~aTPtl~N--aGt~~~qlsSCfl~~v~ 380 (965)
T PRK07207 338 REARAIEFYNLLSSFDFMSSTPTLFN--SGTLRPQLSSCYLTTVP 380 (965)
T ss_pred cHHHHHHHHHHHHcCCeecCCHHHhc--CCCCCCCeeeeEeCCCc
Confidence 5899999999999999999999999 99999999999999875
No 10
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=9e-43 Score=344.87 Aligned_cols=182 Identities=26% Similarity=0.344 Sum_probs=156.6
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhh------hHHHHHHHHHHhhhhcc
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKK------TWSEVIEELYNMVNKET 75 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~------~f~~~~~~~~~~~~~~~ 75 (193)
.++.++..+++|||||+||++++|++|+++ ++.||||+++| |||++.+|||++.+ .|...+..++.... ..
T Consensus 272 ~~~~~~~~~~~~~~~~~e~~~~~~~~a~~~-~~~~p~y~~~A-arl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 348 (1046)
T PRK12365 272 LLADMAFANFYSGIKESEVVLACIMAARAN-IEKEPDYAFVA-AELLLDVVYKEALGKSKYDEDLEEAHKDHFKRYI-LE 348 (1046)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHh-CccCCCHHHHH-HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH-hc
Confidence 467889999999999999999999999999 88899999999 99999999999975 33444444443221 12
Q ss_pred CccCCCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhc----cHHH
Q psy15804 76 GTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGE----DIDA 151 (193)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~----~~~~ 151 (193)
|. .+.+.++ +...|+++|+++|+++||+.|+|+|+++|+++||+|.+|+++|+||++|||||+++|.. +.+|
T Consensus 349 ~~-~~~~~~~---~~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~~Yl~~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~~ 424 (1046)
T PRK12365 349 GD-TYRLNPE---LKHYDLDALAEALDLSRDLQFSYMGVQNLYDRYFNHHEGRRLETPQIFWMRVSMGLALNEGQDKTSW 424 (1046)
T ss_pred Cc-hhhhHHH---hhhhhHHHHHHHHhHHhhCCCCHHHHHHHHHhhCcCCCCCcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 21 1333333 56679999999999999999999999999999999988999999999999999999963 4679
Q ss_pred HHHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 152 AIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 152 ~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
+++||++||+++|+||||||+| |||+++|||||||++|+
T Consensus 425 a~~fy~~ls~~~f~~atPtl~N--aGt~~~qlsSCfl~~v~ 463 (1046)
T PRK12365 425 AITFYNLLSTFRYTPATPTLFN--SGMRHSQLSSCYLSTVQ 463 (1046)
T ss_pred HHHHHHHHHcCCeecCChhhhc--CCCCCCCceeeEeCCCc
Confidence 9999999999999999999999 99999999999999875
No 11
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.1e-42 Score=335.62 Aligned_cols=180 Identities=23% Similarity=0.327 Sum_probs=157.2
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhh--hHHHHHHHHHHhhhhccCccC
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKK--TWSEVIEELYNMVNKETGTRT 79 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~--~f~~~~~~~~~~~~~~~~~~~ 79 (193)
+++.++..+++|||||+||++++|++|++++++.||||+++| ||+++.+|||++.+ .| ..+.... ..|+..
T Consensus 37 ~~~~~~~~~~~~~~t~~el~~~~i~~a~~~~~~~~pdy~~~A-aRl~~~~l~k~~~~~~~~-~~~~~~~-----~~~~~~ 109 (789)
T PRK08447 37 ELEVDAKIQFRDGITTEEIQQTLIKTAVDKIDIDRPNWTFVA-ARLFLYDLYHKVSGFTGY-NHLKEYF-----EKGEKE 109 (789)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHhCCccCccHHHHH-HHHHHHHHHHHhhccccH-HHHHHHH-----HHHhhc
Confidence 477889999999999999999999999999679999999999 99999999999943 23 2222222 224445
Q ss_pred CCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhcc---HHHHHHH
Q psy15804 80 PMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGED---IDAAIET 155 (193)
Q Consensus 80 ~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~---~~~~~~~ 155 (193)
|.+..+++ ...++++|+++|+++||+.|+|+|+++|++|||+|+ +|+++|+||+||||||+++|.++ .+|+++|
T Consensus 110 ~~~~~~~~--~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYllk~~~g~~~E~pq~~~mrVA~~la~~e~~~~~~a~~f 187 (789)
T PRK08447 110 GRILLGLK--EKYDLDDLNAYIKPERDLQFNYLGIKTLYDRYLIKDRNNNPIELPQHMFMAIAMFLAQNELDPQKWAKKF 187 (789)
T ss_pred Cccchhhh--ccccHHHHHHHhCHHHhcCCCHHHHHHHHHhhCccCCCCCEeeCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 66776654 445899999999999999999999999999999997 78899999999999999999854 5799999
Q ss_pred HHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 156 YNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 156 Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
|++||+++|+||||||+| ||++++|||||||++++
T Consensus 188 y~~ls~~~~~~aTPtL~N--agt~~~qlsSCFl~~v~ 222 (789)
T PRK08447 188 YDVISKFEVMLATPTLSN--ARTTRHQLSSCYIGSTP 222 (789)
T ss_pred HHHHHcCCeecCCccccc--cCCCCCCeeeeEeCCCC
Confidence 999999999999999999 99999999999998865
No 12
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=99.96 E-value=7.6e-30 Score=243.40 Aligned_cols=178 Identities=25% Similarity=0.363 Sum_probs=155.1
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCCCCh
Q psy15804 5 LKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISD 84 (193)
Q Consensus 5 ~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 84 (193)
.+...+++++++ +.+.++.++...+...+|+|.+++ +|+.+..+++++.+.+.- ...++..+ ...+.++.++.
T Consensus 3 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~ 75 (651)
T COG0209 3 LRTVIGFYDGIT---IAENLILAALTVIEEDDPDVQRLA-ARLAGSDLRKEAVRQFGR-FDVLDEKV--FALVANGYYDQ 75 (651)
T ss_pred cccccchhcchh---HHHHHhhhhhhhcCccCccHHHHH-HHHHHHHHHHHHhccccc-hhhhhhHH--HHHHhhhhhHH
Confidence 456678899998 888888888888788999999999 999999999999876542 23333322 23566788888
Q ss_pred HHH-HHHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CC-eecCCHHHHHHHHHHHhhhcc-----HHHHHHHH
Q psy15804 85 KHY-EIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NG-RVVERPQHMLMRVAVGIHGED-----IDAAIETY 156 (193)
Q Consensus 85 ~~~-~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g-~~~E~pq~~~mrVA~~~~~~~-----~~~~~~~Y 156 (193)
.++ .+..++++.+.+.++++||..|+|+|+++|++||+++. ++ +++|+||++|||||+++|.++ ++||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~rYl~~~~~~~~~~E~~~~~~~~vA~~la~~e~~~~~~~~a~~~y 155 (651)
T COG0209 76 RLLRLYSREDLDDLNKKILLERDRQFSYAAAKVLYSRYLLKDEDGSEILELPQDLFMRVALLLAQNEAPERRLEWAKEFY 155 (651)
T ss_pred HHHHhhhhhHHHHHHHhhhhcchhhhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHhccCCccchhhHHHHHHH
Confidence 888 58888999999999999999999999999999999997 44 489999999999999999876 56999999
Q ss_pred HHHHhCccccCCccccccccCCCCCCccceeeecc
Q psy15804 157 NLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGV 191 (193)
Q Consensus 157 ~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~ 191 (193)
++||+++|+||||||+| +|++++|||||||+++
T Consensus 156 ~~~~~~~~~patPtl~n--~~~~~~qlssCfv~~~ 188 (651)
T COG0209 156 DLMSSLRFMPATPTLLN--GGTPRGQLSSCFVLPV 188 (651)
T ss_pred HHHhcCeeecCCcceec--CCCCCCceeeeEEecc
Confidence 99999999999999999 9999999999999984
No 13
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.96 E-value=2.5e-29 Score=241.58 Aligned_cols=145 Identities=15% Similarity=0.108 Sum_probs=126.6
Q ss_pred CCCchhchHHHHhchHHHH-HH--hhhHHHHHHHHHHhhhhccCccCCCCChHHHH-HHHHhHHHHHHHhcccccCCCCc
Q psy15804 36 HPDYAVLWLPELLCPNLHK-ET--KKTWSEVIEELYNMVNKETGTRTPMISDKHYE-IIMKNADRLNSAIIYDRDFNYNF 111 (193)
Q Consensus 36 ~pdy~~lA~aRl~~~~l~k-~~--~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y 111 (193)
.-+...+| +|+++..++| ++ +++|.+.+.. .++.|++++++.+ |+.++++++.+.+++.+|..|+|
T Consensus 25 ~~~~d~~A-~~~~~~~~~~~~~~~~~~~~~~~~~---------lv~~~~y~~~~~~~y~~~~l~~~~~~~~~~~~~~~~y 94 (721)
T PRK07187 25 HFDSDKEA-VERYLEEHVEPNQKKFNSLEEKLAY---------LVNNGYYEQEILDAYSFDQIEELFHYAYQYNHRFLSF 94 (721)
T ss_pred cccchHHH-HHHHHHHHhhhccccccCHHHHHHH---------HHHcChhhHHHHhhCCHHHHHHHHhHhhhccccccch
Confidence 45788999 9999999999 57 4455444333 3456789999875 99999999999999889888999
Q ss_pred hhhHhhhhhccccc-CCe-ecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCccccccccCCC-CCCccceee
Q psy15804 112 FGFKTLERSYLMKN-NGR-VVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSR-SPRFSSFSL 188 (193)
Q Consensus 112 ~g~~~l~~~Yl~k~-~g~-~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~-~~~lsSCfl 188 (193)
+|+++|++||++|+ +|+ ++|+||+++|||||++|.++.+.++++|+.|++++|+||||||+| ||++ ++|||||||
T Consensus 95 ~g~~~l~~rYllk~~~~~~~~E~pq~~~~~~Al~l~~~~~~~~~~~y~~~~~~~f~paTPtl~N--aG~~~~~qlsSCFl 172 (721)
T PRK07187 95 MGAMKFYNSYALKTFDGKQYLETFEDRAVMNALFLADGDFTKAFDLLDQILLGRFQPATPTFLN--AGKKRRGEYISCYL 172 (721)
T ss_pred HHHHHHHHhhccccCCCCeeeeCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCcccCCccccc--CCCCCCCCcCceEe
Confidence 99999999999997 455 589999999999999999888899999999999999999999999 9998 699999999
Q ss_pred eccC
Q psy15804 189 YGVR 192 (193)
Q Consensus 189 ~~~~ 192 (193)
++|+
T Consensus 173 ~~v~ 176 (721)
T PRK07187 173 LRVE 176 (721)
T ss_pred ccCC
Confidence 9875
No 14
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.93 E-value=1.6e-26 Score=221.54 Aligned_cols=143 Identities=13% Similarity=0.021 Sum_probs=111.9
Q ss_pred CchhchHHHHhchHHHHHHhh--hHHHHHHHHHHhhhhccCccCCCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhH
Q psy15804 38 DYAVLWLPELLCPNLHKETKK--TWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 115 (193)
Q Consensus 38 dy~~lA~aRl~~~~l~k~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~ 115 (193)
+-+.-| .+.++..+.+++.. +|.+.+.. .++.|++++++-.|..++++++.+.++..++.-|+|+|++
T Consensus 28 ~~d~~a-~~~~~~~~~~~~~~f~~~~~~~~~---------l~~~~~y~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~g~~ 97 (699)
T PRK07632 28 EKDQEA-LVVYLEEIKDNTIFFDTEIERLRY---------LVDNDFYFNVFDIYSEEDLIEVTDYAYSIKFNFASYMSAS 97 (699)
T ss_pred hhHHHH-HHHHHHHhhhccEeecCHHHHHHH---------HHhccHHHHHHHhCCHHHHHHHHhHHhhccccccchhHHH
Confidence 445667 67776666555532 23222222 3445677777633666776676666666666666899999
Q ss_pred hhhhhcccccCC--eecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCccccccccCCC-CCCccceeeeccC
Q psy15804 116 TLERSYLMKNNG--RVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSR-SPRFSSFSLYGVR 192 (193)
Q Consensus 116 ~l~~~Yl~k~~g--~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~-~~~lsSCfl~~~~ 192 (193)
+|+++|++|+++ .++|+||+||||||+++|.+|.++|++||++||+++|+||||||+| ||++ ++|||||||++|+
T Consensus 98 ~~~~~Y~lk~~~~~~~~E~~q~~~~~vAl~l~~~~~~~a~~~y~~ls~~~f~paTPtl~N--aG~~~~~qlsSCFl~~v~ 175 (699)
T PRK07632 98 KFYKDYALKTNDKKQYLEDYEDHVAIVALYLANGDKAKAKQFISAMVEQRYQPATPTFLN--AGRARRGELVSCFLLEVD 175 (699)
T ss_pred HHHhhhccccCCCCeEEeCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCeecCCCcccC--CCCCCCCCeeeEEeCCCC
Confidence 999999999733 4899999999999999999999999999999999999999999999 9997 6999999999875
No 15
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.93 E-value=3.6e-26 Score=219.52 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=119.4
Q ss_pred CchhchHHHHhch-HHHHHHhh--hHHHHHHHHHHhhhhccCccCCCCChHHHH-HHHHhHHHHHHHhcccccCCCCchh
Q psy15804 38 DYAVLWLPELLCP-NLHKETKK--TWSEVIEELYNMVNKETGTRTPMISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFG 113 (193)
Q Consensus 38 dy~~lA~aRl~~~-~l~k~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g 113 (193)
+-+.-| .|.++. ++.+++.. +|.+.+. ..++.|++++++.+ |+.+++++|.+.|+++||..|+|+|
T Consensus 35 ~~d~~a-~~~~~~~~~~~~~~~f~~~~~~~~---------~l~~~~~y~~~~~~~y~~~~i~~l~~~i~~~~~~~~~y~g 104 (714)
T PRK08188 35 DKDRQA-ARQYFLQHVNQNTVFFHSLQEKLD---------YLVEEGYYEEEVLDQYSRNFVKTLFDHAYAKKFRFQTFLG 104 (714)
T ss_pred hhhHHH-HHHHHHHhccccccccccHHHHHH---------HHHHccchhHHHHHhcCHHHHHHHHHHhhhccccccCcHh
Confidence 445566 565553 35555432 2222222 24556789999875 9999999999999999999999999
Q ss_pred hHhhhhhccccc-CCe-ecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCccccccccCCC-CCCccceeeec
Q psy15804 114 FKTLERSYLMKN-NGR-VVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSR-SPRFSSFSLYG 190 (193)
Q Consensus 114 ~~~l~~~Yl~k~-~g~-~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~-~~~lsSCfl~~ 190 (193)
+.+|+++|++|+ +|+ .+|+||+++||||+++|.+|.++|++||++|++++|+||||||+| ||++ ++|||||||++
T Consensus 105 a~~~~~~Y~lk~~~~~~~~E~~~~r~~~vA~~la~~~~~~a~~~y~~l~~~~f~paTPtl~N--aG~~~~g~lsSCFl~~ 182 (714)
T PRK08188 105 AFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAQGDETLARQLVDEIISGRFQPATPTFLN--CGKKQRGELVSCFLLR 182 (714)
T ss_pred HHHHHHhhceecCCCCEEecCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCEecCCcceec--CCCCCCCcceeEEecC
Confidence 999999999997 665 589999999999999999998999999999999999999999999 9998 89999999998
Q ss_pred cC
Q psy15804 191 VR 192 (193)
Q Consensus 191 ~~ 192 (193)
|+
T Consensus 183 v~ 184 (714)
T PRK08188 183 IE 184 (714)
T ss_pred CC
Confidence 75
No 16
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.93 E-value=1.7e-25 Score=216.38 Aligned_cols=149 Identities=20% Similarity=0.289 Sum_probs=117.3
Q ss_pred hhHHHHhccCC--CCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCC
Q psy15804 3 ITLKVIKGLYP--GVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTP 80 (193)
Q Consensus 3 i~~~~~~~l~d--~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~ 80 (193)
++.+|...+.+ .++++|||+.+.++.... ....|++..+| ..-. +|+....
T Consensus 44 l~~~V~~~l~~~~~~sVeeIQDiVE~~L~~~-g~~~~~~~~vA-KaYI---~YR~~r~---------------------- 96 (771)
T PRK06406 44 LTDKVVERLKKYERPTVEQIQDIVEKVLMTK-KINGKDFTDVA-KSYI---LYREKRR---------------------- 96 (771)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhC-CCcccchHHHH-HHHH---HHHHHHH----------------------
Confidence 34445444444 489999999998888887 77889998888 2211 1111100
Q ss_pred CCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhcc-----------
Q psy15804 81 MISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGED----------- 148 (193)
Q Consensus 81 ~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~----------- 148 (193)
...+....|+++||..|+++|+++|.+|||+|+ +|+++|+||+||||||+++|..|
T Consensus 97 ------------~~r~~k~~~~~~~~~~~~~~a~~vl~~RYl~kd~~g~~~E~p~~~f~rvA~~va~~e~~~~~~~~~~~ 164 (771)
T PRK06406 97 ------------KIREEKELIGVKDDLKLTLNAIKVLEARYLLKDEDGKIIETPRQMFRRVARHIAIVEALYDDEVYDKT 164 (771)
T ss_pred ------------hccccccccCcccccccCHHHHHHHHHHHhccCCCCCEecCHHHHHHHHHHHHcchhhcccchhcccc
Confidence 000122446778899999999999999999998 88999999999999999998643
Q ss_pred ----------------------------------------------------HHHHHHHHHHHHhCccccCCcccccccc
Q psy15804 149 ----------------------------------------------------IDAAIETYNLLSEKYFTHAADVMLRTHA 176 (193)
Q Consensus 149 ----------------------------------------------------~~~~~~~Y~~ls~~~~~~aTPtL~N~~a 176 (193)
.+|+++||++|++++|+||||||+| |
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fy~~ms~~~f~pasP~l~N--a 242 (771)
T PRK06406 165 GKQKENAEVIGKLSVTQEDMLKRAFRYLKEEGIMKGDFEEFLDFLKTKWDSIEEYINKFEEVMSNLKFVPNSPTLMN--A 242 (771)
T ss_pred cccccccccccchhhhhhhhhhhhhhhhhhhccccccchhhhhhhccchhhHHHHHHHHHHHHHcCCEecCCHHHhc--C
Confidence 3478999999999999999999999 9
Q ss_pred CCCCCCccceeeeccC
Q psy15804 177 MSRSPRFSSFSLYGVR 192 (193)
Q Consensus 177 Gt~~~~lsSCfl~~~~ 192 (193)
|++++|||||||++|+
T Consensus 243 G~~~~qlssCFvl~v~ 258 (771)
T PRK06406 243 GTKLGQLSACFVLPVP 258 (771)
T ss_pred CCCCCCeeeEEeCCCC
Confidence 9999999999999875
No 17
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.92 E-value=2.1e-25 Score=214.60 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=117.6
Q ss_pred CchhchHHHHhchH-HHHHHhh--hHHHHHHHHHHhhhhccCccCCCCChHHHH-HHHHhHHHHHHHhcccccCCC-Cch
Q psy15804 38 DYAVLWLPELLCPN-LHKETKK--TWSEVIEELYNMVNKETGTRTPMISDKHYE-IIMKNADRLNSAIIYDRDFNY-NFF 112 (193)
Q Consensus 38 dy~~lA~aRl~~~~-l~k~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f-~y~ 112 (193)
+...-| .+.++.. +.+++.. +|.+.+. ..++.|++++++.+ |+.+++++|.+.|++ +|+.| +|+
T Consensus 29 ~~d~~a-~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~y~~~~~~~y~~~~i~~l~~~i~~-~~~~f~~~~ 97 (720)
T PRK07306 29 HKDKEA-LDAFFKENVEPNTMQFDSIKEKIN---------YLIENDYIESAFIKKYRPEFIEKLYQFLKA-QNFRFKSFM 97 (720)
T ss_pred hhhHHH-HHHHHHHhccccccccCCHHHHHH---------HHHhcChhHHHHHhhCCHHHHHHHHHHHhh-ccCcCcCHH
Confidence 345567 6666533 5555432 2322222 24556789999875 999999999999997 89898 999
Q ss_pred hhHhhhhhccccc-CCee-cCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCccccccccCCC-CCCccceeee
Q psy15804 113 GFKTLERSYLMKN-NGRV-VERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSR-SPRFSSFSLY 189 (193)
Q Consensus 113 g~~~l~~~Yl~k~-~g~~-~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~-~~~lsSCfl~ 189 (193)
|+.+|+++|++|+ +|+. +|+||+++|++|++++.++.+++++||++||+++|+||||||+| ||++ ++|||||||+
T Consensus 98 ga~~~~~rY~lk~~~g~~~~E~~~~Rv~~~A~~la~~~~~~a~~~y~~ls~~~f~paTPtl~N--aG~~~~~~lsSCFl~ 175 (720)
T PRK07306 98 AAYKFYNQYALKTNDGEYYLENFEDRVLFNALYFADGDEDLAKDLADEMIHQRYQPATPSFLN--AGRARRGELVSCFLI 175 (720)
T ss_pred HHHHHHHHhCccCCCCCEeccCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCeecCCCCeec--CCCCCCCCeeeEEeC
Confidence 9999999999997 6665 89999999999999999889999999999999999999999999 9997 5999999999
Q ss_pred ccC
Q psy15804 190 GVR 192 (193)
Q Consensus 190 ~~~ 192 (193)
+|+
T Consensus 176 ~v~ 178 (720)
T PRK07306 176 QVT 178 (720)
T ss_pred CCC
Confidence 874
No 18
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=99.91 E-value=4.2e-25 Score=160.01 Aligned_cols=72 Identities=33% Similarity=0.534 Sum_probs=63.6
Q ss_pred CCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhh---------ccHHHHHHHHHHHHhCccccCCccccccccC
Q psy15804 108 NYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHG---------EDIDAAIETYNLLSEKYFTHAADVMLRTHAM 177 (193)
Q Consensus 108 ~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~---------~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aG 177 (193)
.|+|+|+++|+++|++|+ +|+++|+||++|||||+++|. .+.+++.+||++||+++|+||||||+| ||
T Consensus 2 ~~~~~a~~~l~~rYl~k~~~g~~~Etpq~~~~RVA~~la~~e~~y~~~~~~~~~~~~fy~~l~~~~f~patP~l~n--aG 79 (83)
T PF00317_consen 2 LLSYNAAKVLYDRYLLKDEDGKVIETPQEMFMRVAMALASAEPKYDDAEDRMEWAEEFYDLLSNQKFIPATPTLSN--AG 79 (83)
T ss_dssp GSSHHHHHHHHHHTS-BETTSCB--SHHHHHHHHHHHHHTCCGG-THCCTHHHHHHHHHHHHHTTSEEE-HHHHHH--TT
T ss_pred CCCHHHHHHHHHhhCccCCCcCEeeCHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHcCCeecCCHHHhc--CC
Confidence 689999999999999998 689999999999999999997 458899999999999999999999999 99
Q ss_pred CCCC
Q psy15804 178 SRSP 181 (193)
Q Consensus 178 t~~~ 181 (193)
|++|
T Consensus 80 t~~g 83 (83)
T PF00317_consen 80 TKRG 83 (83)
T ss_dssp SSS-
T ss_pred CCCC
Confidence 9975
No 19
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.87 E-value=4.7e-23 Score=195.24 Aligned_cols=89 Identities=26% Similarity=0.253 Sum_probs=84.4
Q ss_pred HHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCcccccccc
Q psy15804 97 LNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHA 176 (193)
Q Consensus 97 l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~a 176 (193)
.+..||++||..|+++|.++|.+||++|+ |+||++|||||+++|..+.+++++||++||+++|+||||||+| +
T Consensus 9 ~~~~i~~~rd~~~~~~~~~~l~~rYl~~~-----Es~~~~~~RvA~~la~~~~~~~~~fy~~Ls~~~~~patP~l~n--a 81 (601)
T PRK09102 9 FQINIDRSRDAWLTEFGKATLRDRYLLEG-----ESYQDLFARIAEAYADIDPEHAQRFYDYMSRGWFMPATPVLSN--G 81 (601)
T ss_pred ccceecchhhcccCHHHHHHHHHhhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCEEcCCHHHhc--C
Confidence 45679999999999999999999999996 9999999999999998778999999999999999999999999 9
Q ss_pred CCCCCCccceeeeccC
Q psy15804 177 MSRSPRFSSFSLYGVR 192 (193)
Q Consensus 177 Gt~~~~lsSCfl~~~~ 192 (193)
|++++|+|||||++++
T Consensus 82 G~~~~~lssCfl~~v~ 97 (601)
T PRK09102 82 GTDRGLPISCFLNYVE 97 (601)
T ss_pred CCCCCCeeeEEeCCCC
Confidence 9999999999998875
No 20
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.83 E-value=6.6e-21 Score=184.50 Aligned_cols=88 Identities=24% Similarity=0.317 Sum_probs=81.3
Q ss_pred ccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhcc---------HHHHHHHHHHHHhCccccCCcccc
Q psy15804 103 YDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGED---------IDAAIETYNLLSEKYFTHAADVML 172 (193)
Q Consensus 103 ~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~---------~~~~~~~Y~~ls~~~~~~aTPtL~ 172 (193)
..+|..|+++|.++|.++|++|+ +|+++|+||++|||||+++|..+ .+++++||++|++++|+||||||+
T Consensus 6 ~~~~~~~~~~a~~vl~~rYl~k~~~g~~~Es~~~~~~RVA~~la~~e~~~~~~~~~~~~~~~fy~~m~~~~f~pasP~l~ 85 (752)
T PRK08665 6 DLPDMKLTDNALTVLEKRYLKKDEDGKPIETPEDMFRRVARTIAAAELIYDSKADVEALADRFYDLMTSLEFLPNSPTLM 85 (752)
T ss_pred ccccCCcCHHHHHHHHHhhCccCCCCCcccCHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHcCCeecCChHHh
Confidence 45788999999999999999997 78899999999999999999743 368999999999999999999999
Q ss_pred ccccCCCCCCccceeeeccC
Q psy15804 173 RTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 173 N~~aGt~~~~lsSCfl~~~~ 192 (193)
| ||++++|||||||++|+
T Consensus 86 n--aG~~~~qlssCFv~~v~ 103 (752)
T PRK08665 86 N--AGRELGQLSACFVLPVG 103 (752)
T ss_pred c--CCCCCCcccceeecCCC
Confidence 9 99999999999999875
No 21
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.
Probab=99.81 E-value=2.1e-20 Score=177.79 Aligned_cols=79 Identities=34% Similarity=0.535 Sum_probs=73.5
Q ss_pred chhhHhhhhhccccc--CCeecCCHHHHHHHHHHHhhhc-----cHHHHHHHHHHHHhCccccCCccccccccCCCCCCc
Q psy15804 111 FFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGIHGE-----DIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRF 183 (193)
Q Consensus 111 y~g~~~l~~~Yl~k~--~g~~~E~pq~~~mrVA~~~~~~-----~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~l 183 (193)
|+|+++|+++|++|+ +|+++|+||++|||||++++.. +.+|+++||++|++++|+||||||+| |||+++||
T Consensus 1 ~~g~~~l~~~Y~lk~~~~~~~~E~p~~~~~rvA~~~a~~e~~~~~~~~~~~fy~~l~~~~~~patp~l~n--aGt~~~~l 78 (617)
T TIGR02506 1 YMGLKELYNRYLLRNAATGAIYESPQEAYMRVAMGLASLEPKDTRLADAIRFYDLLSRLKISPATPTLFN--AGTPRGQL 78 (617)
T ss_pred CchHHHHHHhhceecCCCCCcccCHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHcCCeecCChhhhc--CCCCCCCC
Confidence 789999999999996 4578999999999999999864 46799999999999999999999999 99999999
Q ss_pred cceeeecc
Q psy15804 184 SSFSLYGV 191 (193)
Q Consensus 184 sSCfl~~~ 191 (193)
|||||+++
T Consensus 79 ssCfv~~~ 86 (617)
T TIGR02506 79 SSCFLLDV 86 (617)
T ss_pred cceEecCC
Confidence 99999987
No 22
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.80 E-value=1.6e-19 Score=184.69 Aligned_cols=83 Identities=19% Similarity=0.343 Sum_probs=74.4
Q ss_pred CCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhcc--------------------------------------
Q psy15804 108 NYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGED-------------------------------------- 148 (193)
Q Consensus 108 ~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~-------------------------------------- 148 (193)
.|+-+++++|..|||+|+ +|+++|+|.+||.|||..++..|
T Consensus 114 ~~~~na~~vl~~ryl~~~~~g~i~e~p~~~f~rva~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1740)
T PRK08332 114 RFSINALRVLASRYLKKDENGNIIESPRELFERVAILAVIPDLLYDERVFDKNGNYSQDLKRVEYYLENFEEFDGKYSIG 193 (1740)
T ss_pred ccCHHHHHHHHhhhhccCCCCCcccCHHHHHHHHHHHhcchhhhccchhcccccccccchhhhhhhhhhhhhhhhccccc
Confidence 399999999999999998 89999999999999999976421
Q ss_pred --------------------------------------------HHHHHHHHHHHHhCccccCCccccccccCCCCCCcc
Q psy15804 149 --------------------------------------------IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFS 184 (193)
Q Consensus 149 --------------------------------------------~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~ls 184 (193)
.+.+.+||++||+++|+||||||+| |||+++|||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ls~~~~~~~TPtl~n--agt~~~qls 271 (1740)
T PRK08332 194 KYKLNKYHFERMVNLYRELAEKGKMKVSIDEFLKMLERGEFDKYEKEIEEYFRLMTNQIFMPNTPALIN--SGRPLGMLS 271 (1740)
T ss_pred ccchhhhhHHHHHHHHHHhhhcccccccHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCcccCCCCceec--CCCCCCCcc
Confidence 0223399999999999999999999 999999999
Q ss_pred ceeeeccC
Q psy15804 185 SFSLYGVR 192 (193)
Q Consensus 185 SCfl~~~~ 192 (193)
||||++|+
T Consensus 272 sCfv~~v~ 279 (1740)
T PRK08332 272 ACFVVPIE 279 (1740)
T ss_pred eEEEecCC
Confidence 99999975
No 23
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain. This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.
Probab=99.79 E-value=8.9e-20 Score=172.11 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=76.2
Q ss_pred ccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhc--cHHHHHHHHHHHHhCccccCCccccccccCCCC
Q psy15804 103 YDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGE--DIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180 (193)
Q Consensus 103 ~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~--~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~ 180 (193)
++++.-|+|+|.++|.++|++|+ |+||++|||||+++|.. +.+|+++||++|++++|+||||||+| ||+++
T Consensus 12 ~~~~~~~~~~~~~~l~~rYl~~~-----es~~~~~~RVA~~la~~~~~~~~~~~fy~~Ls~~~f~patP~l~N--aGt~~ 84 (571)
T TIGR02510 12 GEIPEFANAHGRLMFKKGYLLKG-----ESVEEAFKEIAQRAAAHDIREEAEEKFFDLLARGKLALATPIFAN--TGLDR 84 (571)
T ss_pred ccchhhhhHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHhccccchHHHHHHHHHHHcCCeecCChhhhc--CCCCC
Confidence 45666689999999999999995 99999999999999974 46899999999999999999999999 99999
Q ss_pred CCccceeeeccC
Q psy15804 181 PRFSSFSLYGVR 192 (193)
Q Consensus 181 ~~lsSCfl~~~~ 192 (193)
+|+|||||.+|+
T Consensus 85 ~~lsSCFv~~v~ 96 (571)
T TIGR02510 85 GLPISCAGSYVE 96 (571)
T ss_pred CCeeeEEeCCCC
Confidence 999999998875
No 24
>PRK06948 ribonucleotide reductase-like protein; Provisional
Probab=99.71 E-value=1e-17 Score=158.88 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=71.6
Q ss_pred cccCCCCchhhHhhhhhcccccCCeecC-CHHHHHHHHHHHhhhc-----cHHHHHHHHHHHHhCccccCCccccccccC
Q psy15804 104 DRDFNYNFFGFKTLERSYLMKNNGRVVE-RPQHMLMRVAVGIHGE-----DIDAAIETYNLLSEKYFTHAADVMLRTHAM 177 (193)
Q Consensus 104 ~rD~~f~y~g~~~l~~~Yl~k~~g~~~E-~pq~~~mrVA~~~~~~-----~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aG 177 (193)
-++..++-++.++|.+|||+|+ | +||++|||||+++|.. +.+|+++||++||+++ +||||||+| ||
T Consensus 7 ~~~~~~~~~~~~~l~~rYl~~~-----e~~p~~~~~RVA~~la~~e~~~~~~~~~~~fy~~ls~~~-~patp~l~N--aG 78 (595)
T PRK06948 7 IGDMDEQPICDAVFADRYALPG-----ETSRAQVFARVARALALAEPPDTRAGAARRFYRNLLNGA-IGAGRIMAN--AG 78 (595)
T ss_pred CCCCCCCHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcCC-cccChhhhc--CC
Confidence 3567889999999999999985 5 6999999999999974 4679999999999965 799999999 99
Q ss_pred CCC-CCccceeeeccC
Q psy15804 178 SRS-PRFSSFSLYGVR 192 (193)
Q Consensus 178 t~~-~~lsSCfl~~~~ 192 (193)
+++ +|||||||++|+
T Consensus 79 ~~~~~~lssCfv~~v~ 94 (595)
T PRK06948 79 AAPDQTMVNCFVHPIR 94 (595)
T ss_pred CCCCCceeeeEEcccc
Confidence 998 689999998764
No 25
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.
Probab=99.71 E-value=7.3e-18 Score=159.62 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=68.1
Q ss_pred hhhhhccccc-CCeecCCHHHHHHHHHHHhhhccH--------HHHHHHHHHHHhCccccCCccccccccCCCCCCccce
Q psy15804 116 TLERSYLMKN-NGRVVERPQHMLMRVAVGIHGEDI--------DAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSF 186 (193)
Q Consensus 116 ~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~~--------~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSC 186 (193)
+|.+||++|+ +|.++|+||++|+|||++++..+. +++++||++|++++|+||||||+|. +|++++|||||
T Consensus 1 ~l~~rY~~k~~~g~~~E~~~~~~~RvA~~la~~~~~~~~~~~~~~~~~fy~~l~~~~~~patp~l~n~-~g~~~~~lssC 79 (586)
T TIGR02504 1 VLAARYLLKDEDGGIIESPEDLFRRVARALAAAEDKYNSPVWKQWYERFYDLMVNLGFMPNSPTLMNA-GGTRLGQLSAC 79 (586)
T ss_pred ChhhhhceecCCCCccCCHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHcCeEEccchhhhcc-cCCCCCcceee
Confidence 3789999997 788899999999999999997654 6999999999999999999999994 46778999999
Q ss_pred eeeccC
Q psy15804 187 SLYGVR 192 (193)
Q Consensus 187 fl~~~~ 192 (193)
||++|+
T Consensus 80 fv~~v~ 85 (586)
T TIGR02504 80 FVLPVE 85 (586)
T ss_pred ECCCCC
Confidence 999875
No 26
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated
Probab=99.45 E-value=8e-14 Score=137.71 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=70.7
Q ss_pred CCCchhhHhhhhhcccccCCeec--CCHHHHHHHHHHHhhhcc------------HHHHHHHHHHHHhCccccCCccccc
Q psy15804 108 NYNFFGFKTLERSYLMKNNGRVV--ERPQHMLMRVAVGIHGED------------IDAAIETYNLLSEKYFTHAADVMLR 173 (193)
Q Consensus 108 ~f~y~g~~~l~~~Yl~k~~g~~~--E~pq~~~mrVA~~~~~~~------------~~~~~~~Y~~ls~~~~~~aTPtL~N 173 (193)
.++-++..+|..||+.+..|.+. |+|.++|.|||-+++..+ ..+..+||++|++++|+||||||+|
T Consensus 61 ~~s~~a~~vl~~rY~~~~~g~~~~e~S~~q~f~RVA~~~a~~~~~~~~~~~~~~~~~f~~ef~~~L~~~~f~pnSP~l~N 140 (953)
T PRK06556 61 FWSVNATNIVASKYFRGAVGTPERENSLKQLIDRVVKTYTDAGREHGYFATEEDAEIFEHELTWLLLHQKFSFNSPVWFN 140 (953)
T ss_pred cccHHHHHHHHhhhhccCCCCCcccCCHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHcCcEecCChHhhc
Confidence 34778889999999888667654 699999999999998532 1266789999999999999999999
Q ss_pred cccCCC-CCCccceeeeccC
Q psy15804 174 THAMSR-SPRFSSFSLYGVR 192 (193)
Q Consensus 174 ~~aGt~-~~~lsSCfl~~~~ 192 (193)
+|++ ++|||||||++|+
T Consensus 141 --aG~~~~~qlssCFvl~v~ 158 (953)
T PRK06556 141 --VGTESPQQVSACFILSVD 158 (953)
T ss_pred --CCCCCCCceeeEEeCCCC
Confidence 9997 5799999999875
No 27
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.43 E-value=1.2e-13 Score=134.96 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=57.0
Q ss_pred eecCC-HHHHHHHHHHHhhhcc------HHHHHHHHHHHHhCccccCCccccccccCCCCC-Cccceeeecc
Q psy15804 128 RVVER-PQHMLMRVAVGIHGED------IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP-RFSSFSLYGV 191 (193)
Q Consensus 128 ~~~E~-pq~~~mrVA~~~~~~~------~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~-~lsSCfl~~~ 191 (193)
+++|. |+++|.|||+++|..+ .+|+++||++|++++|+||||||+| ||++.+ |||||||+++
T Consensus 125 ~~~e~~~~~~~~RVA~~la~~E~~~~~~~~~~~~fY~~Ls~~~f~PatPtL~N--AGt~~~~~lssCFVl~~ 194 (858)
T PRK08115 125 KPLEIFYEQIAKRNATGLAAVEKTEEKRKESFEKFYQELVNMNFVPAGRVLYG--AGSKTDVTYFNCYVMPF 194 (858)
T ss_pred CcccCCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHcCCeecCChHhhc--CCCCCCCceeeEEecCC
Confidence 67897 9999999999999653 6799999999999999999999999 999987 8999999885
No 28
>cd01679 RNR_I Class I ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (
Probab=98.81 E-value=2.9e-09 Score=98.72 Aligned_cols=42 Identities=43% Similarity=0.664 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCcccccc
Q psy15804 133 PQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRT 174 (193)
Q Consensus 133 pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~ 174 (193)
||++|||||+++|..+.+|+++||++||+++|+||||||+|.
T Consensus 1 pq~~~~rvA~~la~~~~~~~~~fy~~l~~~~~~patp~l~na 42 (460)
T cd01679 1 PQDRLMRVALGLASGDLEWAKEFYDLLSKQRFTPATPTLFNA 42 (460)
T ss_pred ChHHHHHHHHHHhcCCHHHHHHHHHHHHcCCeecCCHHhhcC
Confidence 899999999999998999999999999999999999999985
No 29
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=98.45 E-value=3e-07 Score=92.98 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=52.0
Q ss_pred CC-HHHHHHHHHHHhhh--------ccHHHHHHHHH----HHHhCccccCCccccccccCC-------------------
Q psy15804 131 ER-PQHMLMRVAVGIHG--------EDIDAAIETYN----LLSEKYFTHAADVMLRTHAMS------------------- 178 (193)
Q Consensus 131 E~-pq~~~mrVA~~~~~--------~~~~~~~~~Y~----~ls~~~~~~aTPtL~N~~aGt------------------- 178 (193)
|+ -.++|-|+|-++.. +..+++..||+ +|.+|++.|+||++|| .|.
T Consensus 103 e~s~~q~~~r~~~~~~~~g~~~gyf~~~~da~~f~de~~~~l~~q~~apnSP~wfN--~Gl~~~yg~~~~~~~~~~~d~~ 180 (1220)
T PRK07562 103 ETSAKQVFDRLAGCWTYWGWKGGYFDSEEDARAFYDELRYMLATQMVAPNSPQWFN--TGLHWAYGIDGPGQGHFYVDPK 180 (1220)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHHHHHHHHHhcCcCCCCcceee--ccccccccccCccccccccccc
Confidence 64 58999999988763 23578999999 9999999999999999 997
Q ss_pred -----------CCCCccceeeeccC
Q psy15804 179 -----------RSPRFSSFSLYGVR 192 (193)
Q Consensus 179 -----------~~~~lsSCfl~~~~ 192 (193)
.++|+|||||++|+
T Consensus 181 ~~~~~~~~~~y~~pQlsSCFI~~V~ 205 (1220)
T PRK07562 181 TGKLTKSKSAYEHPQPHACFIQSVE 205 (1220)
T ss_pred cccccccccccCCCCcceEEecccC
Confidence 68999999999875
No 30
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=97.02 E-value=0.00089 Score=48.18 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=43.0
Q ss_pred hhhHHHHhccCC----CCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHH
Q psy15804 2 EITLKVIKGLYP----GVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKE 55 (193)
Q Consensus 2 ~i~~~~~~~l~d----~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~ 55 (193)
+|+.+|...|++ +|||+||++++.+++. .+|.|..++ +++...++||+
T Consensus 39 ~i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~-----~~~~~~~a~-~yi~yr~~r~e 90 (90)
T PF03477_consen 39 EIASEVENKLYDSGKEEISTEEIQDIVENALM-----EEGFYDVAR-AYILYRNIRKE 90 (90)
T ss_dssp HHHHHHHTC-ST----TEEHHHHHHHHHHHHH-----TSTTHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCeeHHHHHHHHHHHHH-----cCChHHHHH-HHHHHHHHHcC
Confidence 578999999999 9999999999999988 668999999 99999998875
No 31
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man
Probab=42.41 E-value=37 Score=33.51 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=54.6
Q ss_pred hhhhhcccc-cCCeecCCHHHHHHHHHHHhhh--c-------------cHHHHHHHHHHHHhCccccCCccccccccCCC
Q psy15804 116 TLERSYLMK-NNGRVVERPQHMLMRVAVGIHG--E-------------DIDAAIETYNLLSEKYFTHAADVMLRTHAMSR 179 (193)
Q Consensus 116 ~l~~~Yl~k-~~g~~~E~pq~~~mrVA~~~~~--~-------------~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~ 179 (193)
+++++|.-. .+|.. |+=++..-||--+... . ..+.+.++|+++.++++.|+..+|-- +||+
T Consensus 4 v~~RTYsR~~~~g~r-E~W~etv~Rvv~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~k~lPsGR~Lw~--~Gt~ 80 (658)
T cd01676 4 TYYRTYSRPKEEGQN-ENWDQTVERVVEGTFELWERHLGNPLRWLNEKAEEEAEELRSLIFELKALPPGRGLWL--GGTD 80 (658)
T ss_pred eEEEeccccCCCCCc-cChHHHHHHHHhcchhhchhhccccchhhhhhhhHHHHHHHHHHHhcccCCCccchhh--cCch
Confidence 445667633 35644 9999999997666432 1 14678899999999999999999988 9975
Q ss_pred ------CCCccceeeeccC
Q psy15804 180 ------SPRFSSFSLYGVR 192 (193)
Q Consensus 180 ------~~~lsSCfl~~~~ 192 (193)
...+-+|-...++
T Consensus 81 ~~~~~~~~~~~NC~f~~~~ 99 (658)
T cd01676 81 YSRQRRFASLNNCAFVSTE 99 (658)
T ss_pred hhhcccccccccceeeccc
Confidence 2367888877654
No 32
>KOG2738|consensus
Probab=35.99 E-value=44 Score=30.24 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=30.4
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCC-Cchhch
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHP-DYAVLW 43 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~p-dy~~lA 43 (193)
++...+-.-+.+||||+|||.++=+.+.+.=..-.| .|..+-
T Consensus 134 evLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FP 176 (369)
T KOG2738|consen 134 EVLDYAATLVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFP 176 (369)
T ss_pred HHHHHHhhhcCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCc
Confidence 344556667899999999999999998887333333 565555
No 33
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=34.71 E-value=54 Score=26.37 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCchhch
Q psy15804 13 PGVTTVQLDNLAAETAAFYEPLKHPDYAVLW 43 (193)
Q Consensus 13 d~itt~el~~~~~~~a~~~~~~~~pdy~~lA 43 (193)
++|+++||++.+.++.... .+-.|..+|
T Consensus 101 ~~IsveEIqDiVE~~L~~~---~~~ay~rfa 128 (154)
T PRK00464 101 REVPSKEIGELVMEELKKL---DEVAYVRFA 128 (154)
T ss_pred CCCCHHHHHHHHHHHHHhc---CCEEEEEhh
Confidence 5899999999999988777 555666666
No 34
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=29.70 E-value=33 Score=25.50 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=29.6
Q ss_pred hhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhch
Q psy15804 3 ITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLW 43 (193)
Q Consensus 3 i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA 43 (193)
+..++...+.+..+..|=...+++..... ...+|+...+.
T Consensus 8 ~~~~i~~~~~~~~~~~ekL~~~i~~~~~~-~~~~~~~~~v~ 47 (133)
T PF08359_consen 8 FLERIEEAIADESSPEEKLRALIEAHLDF-LEENPDLAIVL 47 (133)
T ss_dssp HHHHHHHHHCC--SHHHHHHHHHHHHHHH-HHT-HHHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHH-HHhCCChhhhh
Confidence 45667777788888999888899998888 77899877666
No 35
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=24.15 E-value=1.3e+02 Score=16.01 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=18.1
Q ss_pred hccHHHHHHHHHHHHhCccccC
Q psy15804 146 GEDIDAAIETYNLLSEKYFTHA 167 (193)
Q Consensus 146 ~~~~~~~~~~Y~~ls~~~~~~a 167 (193)
.++.+.|.++|+.|....+.|.
T Consensus 13 ~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 13 AGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CCCHHHHHHHHHHHHHcCCCCC
Confidence 4578899999999998887764
No 36
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=21.29 E-value=2.2e+02 Score=21.19 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=36.9
Q ss_pred CCchhhHhhhhhcccccC--Ce--------ecCC-HHHHHHHHHHHhhh--------ccHHHHHHHHHHHH
Q psy15804 109 YNFFGFKTLERSYLMKNN--GR--------VVER-PQHMLMRVAVGIHG--------EDIDAAIETYNLLS 160 (193)
Q Consensus 109 f~y~g~~~l~~~Yl~k~~--g~--------~~E~-pq~~~mrVA~~~~~--------~~~~~~~~~Y~~ls 160 (193)
++=.+..++..+|+-|.. .. -.|+ -.+++-|||-+++. ...+.|.-||+-|.
T Consensus 17 WSq~AtdI~AqKYFRk~Gvp~~~~~~~~~~g~E~S~rQv~~Rla~tw~~wG~~~GYF~t~eDA~~FydEl~ 87 (93)
T PF08471_consen 17 WSQVATDILAQKYFRKAGVPARDPDEEARFGGETSVRQVFDRLAGTWTYWGWKGGYFATEEDAEAFYDELT 87 (93)
T ss_pred HHHHHHHHHHHHHhhhcCCCcccccccccccccchHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 455677788888888731 11 2264 68999999998864 23578999998875
Done!