Query psy15804
Match_columns 193
No_of_seqs 150 out of 1141
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:47:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hnc_A Ribonucleoside-diphosph 100.0 7.2E-52 2.5E-56 398.5 15.2 186 2-191 38-223 (792)
2 3k8t_A Ribonucleoside-diphosph 100.0 1.6E-51 5.5E-56 398.7 9.6 186 2-191 38-223 (888)
3 2xap_A Ribonucleoside-diphosph 100.0 5.1E-44 1.7E-48 343.9 11.1 184 2-192 40-231 (761)
4 2wgh_A Ribonucleoside-diphosph 100.0 6.9E-38 2.4E-42 298.1 11.9 149 40-191 2-150 (676)
5 1peq_A Ribonucleoside-diphosph 100.0 1.3E-30 4.5E-35 249.3 9.1 156 33-192 10-184 (714)
6 3o0q_A Ribonucleoside-diphosph 99.9 1E-25 3.5E-30 213.4 7.3 94 97-192 3-140 (644)
7 1l1l_A Ribonucleoside triphosp 99.7 1.5E-18 5E-23 166.7 7.1 93 94-192 12-125 (739)
8 3rk6_A Polyadenylate-binding p 22.1 25 0.00085 28.6 0.8 40 12-53 49-88 (234)
9 3fm3_A Methionine aminopeptida 14.6 1.2E+02 0.0042 25.9 3.5 29 3-31 58-86 (358)
10 4fuk_A Methionine aminopeptida 14.3 1.4E+02 0.0047 25.2 3.7 29 3-31 82-110 (337)
No 1
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*
Probab=100.00 E-value=7.2e-52 Score=398.48 Aligned_cols=186 Identities=63% Similarity=1.001 Sum_probs=180.8
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM 81 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~ 81 (193)
+|++++..+++|||||+||++++|++|+++ +++||||++|| |||++.+|||++.++|++.+..+|+++...+|...|+
T Consensus 38 ~i~~~~~~~~~~gitt~el~~~~~~~a~~~-~~~~pdy~~~A-aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~ 115 (792)
T 3hnc_A 38 QITMKVIQGLYSGVTTVELDTLAAETAATL-TTKHPDYAILA-ARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPM 115 (792)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHHHG-GGTCTHHHHHH-HHHHHHHHHHTSCSCHHHHHHHHHSCBCTTTCCBCCS
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHh-hhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 588999999999999999999999999999 78999999999 9999999999999999998999999887778999999
Q ss_pred CChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q psy15804 82 ISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSE 161 (193)
Q Consensus 82 l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~ 161 (193)
+++++++|+++|+++|++.|+|+||+.|+|+|+++|++|||+|.+|+++|+||+||||||+++|.+|+++|++||++||+
T Consensus 116 ~~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~L~~rYllk~~g~~~E~pq~~~~rVA~~l~~~~~~~a~~~y~~ls~ 195 (792)
T 3hnc_A 116 VAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSE 195 (792)
T ss_dssp SCHHHHHHHHHTHHHHHHHCCGGGGGGSCHHHHHHHHHHTSCEETTEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHHHhChhhhcCCChHHHHHHHhccccccCCCeeeCHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCccccccccCCCCCCccceeeecc
Q psy15804 162 KYFTHAADVMLRTHAMSRSPRFSSFSLYGV 191 (193)
Q Consensus 162 ~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~ 191 (193)
++|+||||||+| |||+++|||||||++|
T Consensus 196 ~~f~~aTPtl~N--aGt~~~qlsSCFl~~v 223 (792)
T 3hnc_A 196 RWFTHASPTLFN--AGTNRPQLSSCFLLSM 223 (792)
T ss_dssp TSEEECHHHHHH--TTSSSCCCCCEEEEEC
T ss_pred CCcccCChhhhc--CCCCCCCCCceeccCC
Confidence 999999999999 9999999999999987
No 2
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Probab=100.00 E-value=1.6e-51 Score=398.68 Aligned_cols=186 Identities=58% Similarity=0.960 Sum_probs=129.8
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM 81 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~ 81 (193)
+|+.++..+++|||||+||++++|++|+++ +++||||++|| |||++.+|||++.++|++.+..+|+++..++|++.|+
T Consensus 38 ~i~~~~~~~~~~gitt~el~~~~i~~a~~~-~~~~Pdy~~~A-aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~g~~~~l 115 (888)
T 3k8t_A 38 KVTQRIISGVYEGVTTIELDNLAAETCAYM-TTVHPDYATLA-ARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPM 115 (888)
T ss_dssp ------------------------------------------------------CCCCHHHHHHHHHTCEETTTTEECCS
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHh-cccCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhcccccc
Confidence 578899999999999999999999999999 78999999999 9999999999999999998899998776678999999
Q ss_pred CChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q psy15804 82 ISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSE 161 (193)
Q Consensus 82 l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~ 161 (193)
+++++++++++|+++|++.|+|+||+.|+|+|+++|++|||+|++|+++|+||+||||||+++|.+|+++|++||++||+
T Consensus 116 i~~~~~~~~~~~~~~L~~~i~~~RD~~f~y~g~~~L~~rYllk~~g~~~E~pq~~~mRVA~~la~~~~~~a~~fY~~ms~ 195 (888)
T 3k8t_A 116 ISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSL 195 (888)
T ss_dssp SCHHHHHHHHHTHHHHHTTCCGGGGGGSCHHHHHHHHHHTSCEETTEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHhChhcccCCChHHHHHHHhccccccCCCEeeCHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCccccccccCCCCCCccceeeecc
Q psy15804 162 KYFTHAADVMLRTHAMSRSPRFSSFSLYGV 191 (193)
Q Consensus 162 ~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~ 191 (193)
++|+||||||+| |||+++|||||||+++
T Consensus 196 ~~f~paTPtL~N--AGt~~~qlsSCFll~~ 223 (888)
T 3k8t_A 196 KYFTHASPTLFN--AGTPKPQMSSCFLVAM 223 (888)
T ss_dssp TSEEECHHHHHH--TTSSSCCCCCEEEEEC
T ss_pred CCcccCChhhhc--CCCCCCCCCceeccCC
Confidence 999999999999 9999999999999986
No 3
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Probab=100.00 E-value=5.1e-44 Score=343.89 Aligned_cols=184 Identities=21% Similarity=0.303 Sum_probs=167.5
Q ss_pred hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804 2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM 81 (193)
Q Consensus 2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~ 81 (193)
+|+.++..+++|||||+||++++|++|+.+++++||||+++| |||++.+|||++.+.|.+ ..++.++ +.+++.|+
T Consensus 40 ~~~~~~~~~~~~~~tt~ei~~~~~~~a~~~~~~~~p~~~~~A-arl~~~~l~k~~~~~~~~--~~~~~~~--~~~~~~~~ 114 (761)
T 2xap_A 40 QVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLA-ARLAIFHLRKKAYGQFEP--PALYDHV--VKMVEMGK 114 (761)
T ss_dssp HHHHHHHTTCCTTEEHHHHHHHHHHHHHHTCCSSSTTHHHHH-HHHHHHHHHHHHHSSSSC--CCHHHHH--HHHHHTTS
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHhcCccCcCHHHHH-HHHHHHHHHHHHhcccCh--HHHHHHH--HHHHhcch
Confidence 578899999999999999999999999988799999999999 999999999999886643 2333332 23566789
Q ss_pred CChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc--CCeecCCHHHHHHHHHHHhhhcc-----HHHHH
Q psy15804 82 ISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGIHGED-----IDAAI 153 (193)
Q Consensus 82 l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~--~g~~~E~pq~~~mrVA~~~~~~~-----~~~~~ 153 (193)
+++++.+ |+.+++++|++.|+++||+.|+|+|+++|+++|++|+ +|+++|+||+||||||+++|.++ .++++
T Consensus 115 ~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~~~g~~~l~~rYllk~~~~g~~~E~pq~~~~RVA~~la~~e~~~~~~~~a~ 194 (761)
T 2xap_A 115 YDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVK 194 (761)
T ss_dssp SCTHHHHHSCHHHHHHHHHHCCGGGGGGCCHHHHHHHHHHTSCBCTTTCCBCCCHHHHHHHHHHHHTTTSCTTTHHHHHH
T ss_pred hhHHHHhhccHHHHHHHHhhhcccccCCCCHHHHHHHHhccCCccCCCCceecCHHHHHHHHHHHHhccCccccHHHHHH
Confidence 9999885 9999999999999999999999999999999999995 68999999999999999999876 78999
Q ss_pred HHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804 154 ETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR 192 (193)
Q Consensus 154 ~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~ 192 (193)
+||++||+++|+||||||+| |||+++|||||||++|+
T Consensus 195 ~fy~~ls~~~~~patPtl~n--aGt~~~qlssCFl~~v~ 231 (761)
T 2xap_A 195 RFYDAVSTFKISLPTPIMSG--VRTPTRQFSSCVLIECG 231 (761)
T ss_dssp HHHHHHHTTSEECCHHHHHH--TTSSCCCCCCEEEEECC
T ss_pred HHHHHHHcCCcCCCchhhhc--CCCCCCCcceEEEecCC
Confidence 99999999999999999999 99999999999999875
No 4
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.9e-38 Score=298.06 Aligned_cols=149 Identities=60% Similarity=0.988 Sum_probs=143.2
Q ss_pred hhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhh
Q psy15804 40 AVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLER 119 (193)
Q Consensus 40 ~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~ 119 (193)
++|| |||++.+|||++.++|++.+..++.++.+++|.+.+++++++++++++++++|+++|+|+||+.|+|+|+++|++
T Consensus 2 ~~~a-arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~i~~~rd~~f~~~g~~~l~~ 80 (676)
T 2wgh_A 2 AILA-ARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLER 80 (676)
T ss_dssp --CH-HHHHHHHHHHTSCSCHHHHHHHHHHCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHTCCGGGGGGSCHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcccchhhhCHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHh
Confidence 5799 999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred hcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCccccccccCCCCCCccceeeecc
Q psy15804 120 SYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGV 191 (193)
Q Consensus 120 ~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~ 191 (193)
+|++|.+|+++|+||+||||||+++|.+|.+++++||++||+++|+||||||+| |||+++|||||||++|
T Consensus 81 ~Yllk~~g~~~E~pq~~~~RVA~~la~~~~~~a~~~y~~ls~~~f~patPtl~n--aGt~~~qlssCfl~~v 150 (676)
T 2wgh_A 81 SYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFN--AGTNRPQLSSCFLLSM 150 (676)
T ss_dssp HTSCEETTEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHH--TTSSSCCCCCEEEEEC
T ss_pred hcccccCCCccCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhCCcccCchHHhc--CCCCCCCCCCeEeecC
Confidence 999998899999999999999999999999999999999999999999999999 9999999999999988
No 5
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Probab=99.96 E-value=1.3e-30 Score=249.34 Aligned_cols=156 Identities=18% Similarity=0.139 Sum_probs=135.1
Q ss_pred CCCCCCchhchHHHHhchH--HHHHHhhhHHHHHHHHHHhhhhcc------------CccCCCCChHHH-HHHHHhHHHH
Q psy15804 33 PLKHPDYAVLWLPELLCPN--LHKETKKTWSEVIEELYNMVNKET------------GTRTPMISDKHY-EIIMKNADRL 97 (193)
Q Consensus 33 ~~~~pdy~~lA~aRl~~~~--l~k~~~~~f~~~~~~~~~~~~~~~------------~~~~~~l~~~~~-~~~~~~~~~l 97 (193)
...+|||..|| ||+.+.+ .++++.++|+.....+++++++++ +++.|+|++++. .|..++++++
T Consensus 10 ~~~~~~y~~l~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~~~~~y~~~~l~~~ 88 (714)
T 1peq_A 10 MQETMDYHALN-AMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRL 88 (714)
T ss_dssp SCCCCCHHHHH-HGGGCCCTTSCCCTHHHHHHHHHHHHHTHHHHBCCCSCHHHHHHHHHHTTSBCHHHHTTSCHHHHHHH
T ss_pred ccCCCCHHHHH-HHHcccccCCcccccchHHHHHHHHHHhhhhhccCCCCHHHHHHHHHhcCcccHHHHHhcCHHHHHHH
Confidence 45679999999 9999998 889998889888788888665432 556888988876 3666677776
Q ss_pred HHHhcccccCCC-CchhhHhhhhhccccc-CCe-ecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCcccccc
Q psy15804 98 NSAIIYDRDFNY-NFFGFKTLERSYLMKN-NGR-VVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRT 174 (193)
Q Consensus 98 ~~~i~~~rD~~f-~y~g~~~l~~~Yl~k~-~g~-~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~ 174 (193)
.+.++ +||+.| +|+|+++|+++|++|+ +|+ ++|+||+|+||||++++.++.+++++||++|++++|+||||||+|
T Consensus 89 ~~~~~-~~~~~f~~y~g~~~l~~~Y~lk~~~g~~~~E~~~~~~~rvA~~la~~~~~~a~~~y~~ls~~~f~patPtl~N- 166 (714)
T 1peq_A 89 FEHAH-ASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLN- 166 (714)
T ss_dssp HHHHH-HSCCCCSSHHHHHHHHHHTSCBCTTSSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHH-
T ss_pred Hhhhh-hcCCCCCchHHHHHHHHHcccccCCCCEEeCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccCChhhhc-
Confidence 66665 688888 8999999999999997 554 889999999999999999889999999999999999999999999
Q ss_pred ccCCC-CCCccceeeeccC
Q psy15804 175 HAMSR-SPRFSSFSLYGVR 192 (193)
Q Consensus 175 ~aGt~-~~~lsSCfl~~~~ 192 (193)
||++ ++|||||||++|+
T Consensus 167 -aGt~~~~qlssCFl~~v~ 184 (714)
T 1peq_A 167 -CGKQQRGELVSCFLLRIE 184 (714)
T ss_dssp -TTBSSCCCSCCCEEECCC
T ss_pred -CCCCCCCCccceecCCCC
Confidence 9998 4899999999875
No 6
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*
Probab=99.92 E-value=1e-25 Score=213.36 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=88.1
Q ss_pred HHHHhcccccCCCCchhhHhhhhhccccc-CCeecC-CHHHHHHHHHHHhhhcc---------------HHHHHHHHHHH
Q psy15804 97 LNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVE-RPQHMLMRVAVGIHGED---------------IDAAIETYNLL 159 (193)
Q Consensus 97 l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E-~pq~~~mrVA~~~~~~~---------------~~~~~~~Y~~l 159 (193)
+..+||++||..|+|+|+++|.+||++|+ +|+++| +||+||||||+++|..+ .+++++||++|
T Consensus 3 ~~~~~~~~~d~~~s~~a~~~l~~rYllk~~~g~~~E~spq~~~~RVA~~la~~e~~~~~~~~~~~~~~~~~~~~~fy~~l 82 (644)
T 3o0q_A 3 LSDLISRWIDVEPSKNAQIILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRVL 82 (644)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTSCBCTTSCBSCCSHHHHHHHHHHHHHGGGGGCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcCCCCCCHHHHHHHHHhhCccCCCCCCccCCHHHHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHH
Confidence 45689999999999999999999999996 899999 99999999999999876 35899999999
Q ss_pred HhCccccCCccccccccCC---------C------------------CCCccceeeeccC
Q psy15804 160 SEKYFTHAADVMLRTHAMS---------R------------------SPRFSSFSLYGVR 192 (193)
Q Consensus 160 s~~~~~~aTPtL~N~~aGt---------~------------------~~~lsSCfl~~~~ 192 (193)
|+++|+||||||+| ||| + ++|||||||++|+
T Consensus 83 s~~~f~patPtl~N--aGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qlssCFl~~v~ 140 (644)
T 3o0q_A 83 KARLFIPNSPTLFN--AGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVG 140 (644)
T ss_dssp HTTSEEECHHHHHH--TTTTSCHHHHSSCGGGCCHHHHHHHHHHCCTTCCCCCEEECCCC
T ss_pred HhCCEecCChHhhc--CCCCcccccccCChhhccccchhhhccccccCCCccceEecCCC
Confidence 99999999999999 999 8 8999999999885
No 7
>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4
Probab=99.74 E-value=1.5e-18 Score=166.71 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=81.5
Q ss_pred HHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhc---------------cHHHHHHHHH
Q psy15804 94 ADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGE---------------DIDAAIETYN 157 (193)
Q Consensus 94 ~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~---------------~~~~~~~~Y~ 157 (193)
+++++..|.+.+|. +|..+++++|+.|. +|+++|+||++|||||++++.. ..++|++||+
T Consensus 12 ~~~~~~~~~p~~~~----~g~~~~~r~Y~~~~~~g~~~E~~~e~~~RVa~g~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 87 (739)
T 1l1l_A 12 IDRVKASVKPHWGK----LGWVTYKRTYARWLPEKGRSENWDETVKRVVEGNINLDPRLQDSPSLELKQSLTEEAERLYK 87 (739)
T ss_dssp HHHHHHHCCCCCCT----THHHHHHTTTCCEETTTTEECCHHHHHHHHHHHHHTTCGGGGSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcCCCCcCh----hHHHHHHhhcccCCCCCCeecCHHHHHHHHHHHHHhhhhhcccccccccchhhHHHHHHHHH
Confidence 45788888887776 79999999999987 7888899999999999987742 1379999999
Q ss_pred HHHhCccccCCccccccccCCC----C-CCccceeeeccC
Q psy15804 158 LLSEKYFTHAADVMLRTHAMSR----S-PRFSSFSLYGVR 192 (193)
Q Consensus 158 ~ls~~~~~~aTPtL~N~~aGt~----~-~~lsSCfl~~~~ 192 (193)
+|++++|+||||||+| |||+ + +||+|||+++|+
T Consensus 88 ~m~~~~~~pa~ptL~n--aGt~~~~~~~~~l~sCf~~~v~ 125 (739)
T 1l1l_A 88 LIYGLGATPSGRNLWI--SGTDYQRRTGDSLNNCWFVAIR 125 (739)
T ss_dssp HHHTTSEEECHHHHHH--TTSHHHHTSTTTTCCEEEEECS
T ss_pred HHHhCCeeccChHHhh--cCCCccccCCCceeeeEEeecc
Confidence 9999999999999999 9998 3 389999998875
No 8
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=22.10 E-value=25 Score=28.63 Aligned_cols=40 Identities=18% Similarity=-0.016 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHH
Q psy15804 12 YPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLH 53 (193)
Q Consensus 12 ~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~ 53 (193)
..++++.+....+++.--+. +..+|.|..+. ||+.-.-..
T Consensus 49 ~~~~~~~~~L~~vi~lIfek-Ai~ep~fs~~Y-A~LC~~l~~ 88 (234)
T 3rk6_A 49 NGCVTTDDALQELVELIYQQ-ATSIPNFSYMG-ARLCNYLSH 88 (234)
T ss_dssp HHHCCSHHHHHHHHHHHHHH-HHSSTTCHHHH-HHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHH-HHhCcccHHHH-HHHHHHHHH
Confidence 34566777777888887777 77899999999 998765443
No 9
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A*
Probab=14.61 E-value=1.2e+02 Score=25.88 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=22.2
Q ss_pred hhHHHHhccCCCCCHHHHHHHHHHHHhhc
Q psy15804 3 ITLKVIKGLYPGVTTVQLDNLAAETAAFY 31 (193)
Q Consensus 3 i~~~~~~~l~d~itt~el~~~~~~~a~~~ 31 (193)
+...+...+.+|||+.||++.+-+.....
T Consensus 58 v~~~~~~~ikpG~t~~el~~~~e~~i~~~ 86 (358)
T 3fm3_A 58 ARYRVQSIVRPGITLLEIVRSIEDSTRTL 86 (358)
T ss_dssp HHHHHHHHCCTTCBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 45667788999999999998876655443
No 10
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei}
Probab=14.34 E-value=1.4e+02 Score=25.15 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=23.5
Q ss_pred hhHHHHhccCCCCCHHHHHHHHHHHHhhc
Q psy15804 3 ITLKVIKGLYPGVTTVQLDNLAAETAAFY 31 (193)
Q Consensus 3 i~~~~~~~l~d~itt~el~~~~~~~a~~~ 31 (193)
....+...+.+|||+.||+..+.+...+.
T Consensus 82 a~~~~~~~ikpG~te~el~~~~~~~~~~~ 110 (337)
T 4fuk_A 82 VLDIATAAAKPGITTDELDRIVHEATVER 110 (337)
T ss_dssp HHHHHHHHCCTTCBHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 44667788999999999998887777665
Done!