RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15804
         (193 letters)



>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
           ribonucleotide reductase, nucleotide analogs, all enzyme
           ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
           cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
           1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
           3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
          Length = 888

 Score =  230 bits (588), Expect = 3e-71
 Identities = 108/192 (56%), Positives = 144/192 (75%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V++T ++I G+Y GVTT++LDNLAAET A+     HPDYA L    +   NLHK+T K +
Sbjct: 37  VKVTQRIISGVYEGVTTIELDNLAAETCAYMTT-VHPDYATL-AARIAISNLHKQTTKQF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFKTLERS
Sbjct: 95  SKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL++ NG+V ERPQH++MRVA+GIHG DI+AA+ETYNL+S KYFTHA+  +   +A +  
Sbjct: 155 YLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLF--NAGTPK 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQMSSCFLVAMK 224


>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase,
           ribonucleotide reductase, allosteric enzyme, binding,
           DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB:
           3hnd_A* 3hne_A* 3hnf_A*
          Length = 792

 Score =  226 bits (578), Expect = 3e-70
 Identities = 117/192 (60%), Positives = 148/192 (77%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
            +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +
Sbjct: 37  AQITMKVIQGLYSGVTTVELDTLAAETAATLTT-KHPDYAIL-AARIAVSNLHKETKKVF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFKTLERS
Sbjct: 95  SDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+  +   +A +  
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLF--NAGTNR 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQLSSCFLLSMK 224


>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA
           replication, allosteric enzyme, nucleotide-binding,
           cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A
           {Homo sapiens}
          Length = 676

 Score =  200 bits (509), Expect = 5e-61
 Identities = 88/145 (60%), Positives = 113/145 (77%), Gaps = 2/145 (1%)

Query: 47  LLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 106
           +   NLHKETKK +S+V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRD
Sbjct: 8   IAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRD 67

Query: 107 FNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTH 166
           F+YN+FGFKTLERSYL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTH
Sbjct: 68  FSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTH 127

Query: 167 AADVMLRTHAMSRSPRFSSFSLYGV 191
           A+  +   +A +  P+ SS  L  +
Sbjct: 128 ASPTLF--NAGTNRPQLSSCFLLSM 150


>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha;
           oxidoreductase, DNA replication, allosteric enzyme,
           nucleotide-binding; HET: NIY; 2.10A {Escherichia coli}
           PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A
           2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A*
           2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
          Length = 761

 Score =  188 bits (479), Expect = 3e-56
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 17/193 (8%)

Query: 2   EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
           ++ L+     Y G+ T  +     + AA       PDY  L    L   +L K+    + 
Sbjct: 40  QVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYL-AARLAIFHLRKKAYGQFE 98

Query: 62  EVIEELYNMVNK--ETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLER 119
                LY+ V K  E G     + + + E   +   ++++ I +DRD  +++   K LE 
Sbjct: 99  --PPALYDHVVKMVEMGKYDNHLLEDYTE---EEFKQMDTFIDHDRDMTFSYAAVKQLEG 153

Query: 120 SYLMKN--NGRVVERPQHMLMRVAVGIHGE-----DIDAAIETYNLLSEKYFTHAADVML 172
            YL++N   G + E  Q + + VA  +         +      Y+ +S    +    +M 
Sbjct: 154 KYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIM- 212

Query: 173 RTHAMSRSPRFSS 185
            +   + + +FSS
Sbjct: 213 -SGVRTPTRQFSS 224


>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded
           alpha/beta barrel, protein-specificity-effector complex,
           DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP:
           a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
          Length = 714

 Score =  131 bits (331), Expect = 8e-36
 Identities = 26/162 (16%), Positives = 47/162 (29%), Gaps = 19/162 (11%)

Query: 23  LAAETAAFYEPLKHPDYAVLWLPELLCPNL--HKETKKTWSEVIEELYNMVNKETGTRTP 80
           +A  T       +  DY  L    L   +   H +  K    +       V   + T   
Sbjct: 1   MATTTPERVMQ-ETMDYHAL-NAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFAS 58

Query: 81  -------MISDKHYEIIM------KNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNN- 126
                  ++ + +Y+  +          RL             F G      SY +K   
Sbjct: 59  QHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFD 118

Query: 127 -GRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHA 167
             R +E  +  +  VA+ +   D   A +  + +    F  A
Sbjct: 119 GKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPA 160


>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel,
           adenosylcobalamin dependent, ribonucle reductase; HET:
           TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A*
           1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A*
           1xjj_A*
          Length = 644

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 17/93 (18%)

Query: 96  RLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERP-QHMLMRVAVGI--------- 144
           +L+  I    D   +      L   Y MK+ +G  +E   + +  RVA  +         
Sbjct: 2   KLSDLISRWIDVEPSKNAQIILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPS 61

Query: 145 --HGEDIDAAIET----YNLLSEKYFTHAADVM 171
               E +D   E     + +L  + F   +  +
Sbjct: 62  YKKNEKLDRIKEWEDIFFRVLKARLFIPNSPTL 94


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 33/214 (15%), Positives = 59/214 (27%), Gaps = 53/214 (24%)

Query: 2   EITLKVIKGLY-----PGVT---------TVQLDNLAAETAAFYEPLKHPDYAVLWL--- 44
           +  LK+ + L        V          T     +A +    Y+     D+ + WL   
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 45  ----PELLCP---NLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHY-EIIMKNADR 96
               PE +      L  +    W+   +   N        +  + S +     ++K+   
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-------IKLRIHSIQAELRRLLKSKPY 243

Query: 97  LNSAIIYD--------RDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGED 148
            N  ++            FN      K L    L     +V +             H   
Sbjct: 244 ENCLLVLLNVQNAKAWNAFN---LSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 149 IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPR 182
                E  +LL  KY        L    ++ +PR
Sbjct: 297 TLTPDEVKSLLL-KYLDCRPQ-DLPREVLTTNPR 328



 Score = 36.8 bits (84), Expect = 0.003
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 27/136 (19%)

Query: 37  PDYAVLWLPELLCPNLHKETKKTWS-EVIEELYNMVNKETGTRT--PMISDKHYEII--- 90
             +   ++    C ++    K   S E I+ +    +  +GT      +  K  E++   
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 91  MKNADRLNSAIIYDRDFNYNFFGFKTLERSYL-----MKNNGRV-----VERPQHML--- 137
           ++   R+N   +              + R Y+     + N+ +V     V R Q  L   
Sbjct: 83  VEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 138 -----MRVA--VGIHG 146
                +R A  V I G
Sbjct: 142 QALLELRPAKNVLIDG 157



 Score = 27.5 bits (60), Expect = 3.6
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 15/64 (23%)

Query: 28  AAFYEPLKHPDYAVLWLPELLCPNLHKETK------KTWSEVIEELYN---MVNKETGTR 78
             F E +   +Y   +L       +  E +      + + E  + LYN   +  K   +R
Sbjct: 80  QKFVEEVLRINYK--FLMS----PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 79  TPMI 82
               
Sbjct: 134 LQPY 137


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.9 bits (77), Expect = 0.028
 Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 76/215 (35%)

Query: 3   ITLKVIKGLYP--------GVTTVQLDNLAA------ET-AAFYEPLKHPDYAVLWL--- 44
           +T K++ G  P        G T      + A      ++  +F+  ++    A+  L   
Sbjct: 251 VTAKLL-GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK---AITVLFFI 306

Query: 45  --------PEL-LCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNAD 95
                   P   L P++ +++ +             N E G  +PM+S     I     +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLE-------------NNE-GVPSPMLS-----ISNLTQE 347

Query: 96  RLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGR---VVERPQHMLMRVAVGIHGEDIDAA 152
           ++   +      N +    K +E S L+  NG    VV  P   L  + + +      + 
Sbjct: 348 QVQDYV---NKTNSHLPAGKQVEIS-LV--NGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401

Query: 153 IETYNLLSEKYFTHAADVMLRTHAMSRSPRFS-SF 186
           ++                  R     R  +FS  F
Sbjct: 402 LDQS----------------RIPFSERKLKFSNRF 420



 Score = 30.4 bits (68), Expect = 0.46
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 18/84 (21%)

Query: 114 FKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLR 173
               E  YL  N+  +     H L   A  +  E+    ++T  L+  K +  A  +  R
Sbjct: 88  LTEFENCYLEGND--I-----HAL---AAKLLQENDTTLVKTKELI--KNYITARIMAKR 135

Query: 174 ------THAMSRSPRFSSFSLYGV 191
                   A+ R+    +  L  +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAI 159


>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc
           metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A
           {Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A*
           2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A*
           2x95_A* 1j36_A* 1j37_A* 1j38_A
          Length = 598

 Score = 28.3 bits (62), Expect = 1.7
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 18  VQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGT 77
           V+L+  AA+             A  WL E       ++ +  +++ I  LY  ++     
Sbjct: 169 VELNTKAAKL------NNFTSGAEAWLDEYEDDTFEQQLEDIFAD-IRPLYQQIHGYVRF 221

Query: 78  R 78
           R
Sbjct: 222 R 222


>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2,
           structural GENOMIC,NYSGXRC., structural genomics; 2.06A
           {Clostridium acetobutylicum} PDB: 2qh0_A
          Length = 133

 Score = 27.0 bits (60), Expect = 2.2
 Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 135 HMLMRVA-VGIHGEDIDAAIETYNLL 159
           HM ++V  +G   ++ID+A++ +  L
Sbjct: 3   HMSLKVHHIGYAVKNIDSALKKFKRL 28


>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
           hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
           c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
           2l3h_A 2l77_A 2l79_A
          Length = 354

 Score = 27.8 bits (61), Expect = 2.7
 Identities = 12/105 (11%), Positives = 32/105 (30%)

Query: 7   VIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEE 66
            +  L+P       + +          +   +  +L+LP   CP   +   +T      +
Sbjct: 87  NLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQ 146

Query: 67  LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 111
                 K+       +S  H + +     ++   +  +   N+  
Sbjct: 147 KRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTL 191


>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor,
           enalaprilat, zinc dependant peptidase, anti-hypertensive
           drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB:
           1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A*
           2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
          Length = 589

 Score = 27.9 bits (61), Expect = 2.8
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 18  VQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYN 69
           V+L N AA          + D    W      P+L ++ ++ + E ++ LY 
Sbjct: 165 VELINQAARL------NGYVDAGDSWRSMYETPSLEQDLERLFQE-LQPLYL 209


>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription
           regulation; 1.78A {Mycobacterium tuberculosis}
          Length = 110

 Score = 26.0 bits (58), Expect = 3.8
 Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 114 FKTLERSYLMKNNGRVVERPQ 134
           F  L   Y + N G V+ +P+
Sbjct: 40  FTLLR--YFVINAGTVLSKPK 58


>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
           allosteric regulation hydrolase, membrane; 3.02A {Homo
           sapiens}
          Length = 691

 Score = 26.9 bits (59), Expect = 5.0
 Identities = 4/33 (12%), Positives = 13/33 (39%)

Query: 154 ETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSF 186
           + Y       + HA  V    + + ++   +++
Sbjct: 435 KGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNY 467


>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic
           phosphodiesterase 8A...; phosphodiesterase 8A PDE8A
           inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A*
          Length = 338

 Score = 26.7 bits (59), Expect = 5.4
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 164 FTHAADVMLRTHAMSRSPRFSSF 186
            TH+ADV+  T       R    
Sbjct: 77  STHSADVLHATAYFLSKERIKET 99


>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
          center for infectious DI protease, hydrolase; 2.15A
          {Mycobacterium abscessus}
          Length = 286

 Score = 26.4 bits (59), Expect = 5.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 13 PGVTTVQLDNLAAE 26
           GV+T++LD +A  
Sbjct: 63 AGVSTLELDQVAES 76


>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein;
           1.50A {Streptococcus pyogenes}
          Length = 96

 Score = 25.1 bits (56), Expect = 6.5
 Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 2/21 (9%)

Query: 114 FKTLERSYLMKNNGRVVERPQ 134
           +  L    LM N  RV+ R +
Sbjct: 28  YDLLN--ILMTNMNRVMTREE 46


>2hqn_A Putative transcriptional regulator; phosporylation-independent
           response regulator, signaling Pro; NMR {Helicobacter
           pylori}
          Length = 109

 Score = 25.2 bits (56), Expect = 7.6
 Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 114 FKTLERSYLMKNNGRVVERPQ 134
           F+ L   +L ++  ++V + Q
Sbjct: 35  FEVLT--HLARHRDQIVSKEQ 53


>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
          1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
          1qxw_A* 1qxz_A*
          Length = 252

 Score = 25.9 bits (58), Expect = 8.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 13 PGVTTVQLDNLAAE 26
          PG+TT +LDN+A E
Sbjct: 32 PGITTKELDNIAKE 45


>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure
           initiative, glyoxalas PSI-biology, lyase; 1.94A
           {Bacillus halodurans}
          Length = 161

 Score = 25.6 bits (56), Expect = 8.9
 Identities = 4/24 (16%), Positives = 8/24 (33%), Gaps = 1/24 (4%)

Query: 134 QHMLMRVA-VGIHGEDIDAAIETY 156
                ++  +GI    I   +  Y
Sbjct: 3   AEKSNKLDHIGIAVTSIKDVLPFY 26


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0819    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,041,432
Number of extensions: 179515
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 42
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)