RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15804
         (193 letters)



>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 212

 Score =  107 bits (268), Expect = 5e-30
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 11/173 (6%)

Query: 2   EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
           ++ L+     Y G+ T  +     + AA       PDY  L    L   +L K+    + 
Sbjct: 31  QVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYL-AARLAIFHLRKKAYGQFE 89

Query: 62  EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
                 + +   E G      +    +   +   ++++ I +DRD  +++   K LE  Y
Sbjct: 90  PPALYDHVVKMVEMG---KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKY 146

Query: 122 LMKN--NGRVVERPQHMLMRVAVGIHGE-----DIDAAIETYNLLSEKYFTHA 167
           L++N   G + E  Q + + VA  +         +      Y+ +S    +  
Sbjct: 147 LVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLP 199


>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase,
           N-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 162

 Score = 83.0 bits (205), Expect = 4e-21
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 7/119 (5%)

Query: 51  NLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 110
              +    T++   E L  +V +  G     +  ++         RL             
Sbjct: 35  THVRPHSVTFASQHERLGTLVRE--GYYDDAVLARYD---RAFVLRLFEHAHASGFRFQT 89

Query: 111 FFGFKTLERSYLMKNN--GRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHA 167
           F G      SY +K     R +E  +  +  VA+ +   D   A +  + +    F  A
Sbjct: 90  FLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPA 148


>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 25.2 bits (55), Expect = 3.3
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 137 LMRVAVGIHGEDIDAAIETYNLLSEK 162
           L +  + +     + A++ YN L  +
Sbjct: 84  LKKHGIDVRVLQTEQAVKEYNALVAQ 109


>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 218

 Score = 25.0 bits (53), Expect = 6.5
 Identities = 7/55 (12%), Positives = 13/55 (23%)

Query: 6  KVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
          K IK   PG+  ++L     +              +           +K      
Sbjct: 19 KAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAAHYTPYKGDTTVL 73


>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 436

 Score = 25.2 bits (54), Expect = 7.2
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 20  LDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRT 79
           L+ L   T A        D    +  E L  +L  +   +     E     +N  +   T
Sbjct: 303 LNELGKLTEAIQCKTVDADEEQDFDKEFLSLDLAAKFVTST----ESAIQHINTHSSRHT 358

Query: 80  PMISDKHYEIIMKNADRLNSAIIY 103
             I  ++     K    ++S+ +Y
Sbjct: 359 DAIVTENKANAEKFMKGVDSSGVY 382


>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 194

 Score = 24.5 bits (52), Expect = 7.8
 Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 5/106 (4%)

Query: 57  KKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD-----FNYNF 111
           K T  E I + Y   +  TG                 ++ +    +   +          
Sbjct: 21  KGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAM 80

Query: 112 FGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYN 157
                  + +L+    R V++ +    ++        +DA  ET  
Sbjct: 81  VAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMT 126


>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein
           BH05650 {Bartonella henselae [TaxId: 38323]}
          Length = 118

 Score = 24.0 bits (52), Expect = 9.0
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 137 LMRVAVGIHGEDIDAAIETYNLL 159
           L    +        AA+ T+N+L
Sbjct: 81  LWEKRISSDTMSTGAAVRTFNVL 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,257
Number of extensions: 33476
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 14
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)