BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15805
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21524|RIR1_YEAST Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR1 PE=1
SV=2
Length = 888
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 38/44 (86%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
+CFL+AM+EDSIEGI T +C LISK AGGIGL++HNIR+TG+
Sbjct: 217 SCFLVAMKEDSIEGIYDTLKECALISKTAGGIGLHIHNIRSTGS 260
>sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large subunit
OS=Caenorhabditis elegans GN=rnr-1 PE=3 SV=1
Length = 788
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 39/56 (69%), Gaps = 5/56 (8%)
Query: 8 TCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
TC P + +CFLL M EDSI GI T QC LISK+AGGIGLNVH IRATG+
Sbjct: 216 TCRPQMS-----SCFLLTMSEDSILGIYDTLKQCALISKSAGGIGLNVHKIRATGS 266
>sp|P36602|RIR1_SCHPO Ribonucleoside-diphosphate reductase large chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc22 PE=1 SV=2
Length = 811
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
+CFL+ M++DSIEGI T C +ISK AGGIG+N+HNIRATG+
Sbjct: 217 SCFLVTMKDDSIEGIYDTLKMCAMISKTAGGIGINIHNIRATGS 260
>sp|O15909|RIR1_TRYBB Ribonucleoside-diphosphate reductase large subunit OS=Trypanosoma
brucei brucei GN=RNR1 PE=2 SV=1
Length = 838
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 38/44 (86%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
+CFL+AM+EDSI+GI T QC +ISK+AGGIG+++HNIRA G+
Sbjct: 227 SCFLVAMREDSIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGS 270
>sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis
thaliana GN=RNR1 PE=1 SV=1
Length = 816
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 40/47 (85%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
+CFL+ M++DSIEGI T +C +ISK+AGGIG++VHNIRATG+ ++
Sbjct: 217 SCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIR 263
>sp|Q9UW15|RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2
Length = 929
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
+CFL+ M+EDSIEGI T C +ISK AGGIGLN+H IRATG+
Sbjct: 217 SCFLVDMKEDSIEGIYDTLKTCAMISKMAGGIGLNIHRIRATGS 260
>sp|P21672|RIR3_YEAST Ribonucleoside-diphosphate reductase large chain 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR3 PE=1
SV=4
Length = 869
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 38/44 (86%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
+CFL+AM++DSIEGI T +C +ISK AGG+GL+++NIR+TG+
Sbjct: 217 SCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGS 260
>sp|P48591|RIR1_DROME Ribonucleoside-diphosphate reductase large subunit OS=Drosophila
melanogaster GN=RnrL PE=1 SV=2
Length = 812
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 34/46 (73%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDL 65
+CFLL M DSIEGI + QC +ISK+AGGIGLNVH IRA G +
Sbjct: 228 SCFLLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSI 273
>sp|P79732|RIR1_DANRE Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio
GN=rrm1 PE=2 SV=1
Length = 794
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
+CFLLAM++DSIEGI T QC LISK+AGGIG+ V IRATG
Sbjct: 217 SCFLLAMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 259
>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii
GN=RRM1 PE=2 SV=1
Length = 792
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
+CFLL+M++DSIEGI T QC LISK+AGGIG+ V IRATG+
Sbjct: 217 SCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGS 260
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus
GN=Rrm1 PE=1 SV=2
Length = 792
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
+CFLL+M++DSIEGI T QC LISK+AGGIG+ V IRATG+
Sbjct: 217 SCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGS 260
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens
GN=RRM1 PE=1 SV=1
Length = 792
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
+CFLL+M++DSIEGI T QC LISK+AGGIG+ V IRATG+
Sbjct: 217 SCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGS 260
>sp|P32984|RIR1_VAR67 Ribonucleoside-diphosphate reductase large subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=I4L PE=2 SV=1
Length = 771
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 33/42 (78%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
CFLL M +DSIEGI T +C LISK AGGIGL++ NIRA+G
Sbjct: 218 CFLLNMMDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASG 259
>sp|Q54Q71|RIR1_DICDI Ribonucleoside-diphosphate reductase large subunit OS=Dictyostelium
discoideum GN=rnrA PE=3 SV=1
Length = 870
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRA 60
+CFL+ M+EDSI+GI T QC LISK+AGGIG+ VH IRA
Sbjct: 235 SCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRA 275
>sp|P12848|RIR1_VACCW Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Western Reserve) GN=VACWR073 PE=1 SV=1
Length = 771
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
+CFLL M +DSIEGI T +C LISK AGGIGL++ NIRA+G+
Sbjct: 217 SCFLLNMIDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGS 260
>sp|P20503|RIR1_VACCC Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Copenhagen) GN=I4L PE=2 SV=1
Length = 771
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 33/42 (78%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
CFLL M +DSIEGI T +C LISK AGGIGL++ NIRA+G
Sbjct: 218 CFLLNMIDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASG 259
>sp|Q76RD8|RIR1_VACCA Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Ankara) GN=MVA065L PE=2 SV=1
Length = 771
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 33/42 (78%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
CFLL M +DSIEGI T +C LISK AGGIGL++ NIRA+G
Sbjct: 218 CFLLNMIDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASG 259
>sp|P50647|RIR1_PLAFG Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate FCR-3 / Gambia) GN=RNR1 PE=3 SV=1
Length = 804
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRA 60
+CFLL+M+ DSIEGI T QC LISK AGGIG+ V +IR
Sbjct: 216 SCFLLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDIRG 256
>sp|P50648|RIR1_PLAF4 Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate Dd2) GN=RNR1 PE=2 SV=1
Length = 806
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRA 60
+CFLL+M+ DSIEGI T QC LISK AGGIG+ V +IR
Sbjct: 215 SCFLLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDIRG 255
>sp|O61065|RIR1_CRYPV Ribonucleoside-diphosphate reductase large chain OS=Cryptosporidium
parvum GN=RNR1 PE=3 SV=2
Length = 803
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
+CFLL + EDSI GI T T+C ISK AGG+G+ V NIR TG+ ++
Sbjct: 215 SCFLLRIPEDSINGIFDTLTKCANISKTAGGLGVAVSNIRGTGSYIR 261
>sp|Q8SR37|RIR1_ENCCU Ribonucleoside-diphosphate reductase large chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU10_0920 PE=3 SV=1
Length = 768
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
+CFL+ +EDSIEG+ Q +I+K +GGIGLN+H IR+ G+ L+
Sbjct: 211 SCFLITPREDSIEGVYHMINQAAIITKYSGGIGLNLHGIRSKGSSLR 257
>sp|P74240|RIR1_SYNY3 Ribonucleoside-diphosphate reductase subunit alpha OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=nrdA PE=3 SV=1
Length = 767
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
+CF++AM ED++E I T ISK GG+G+NV IRATG+
Sbjct: 243 SCFIVAM-EDNLESIFGEITNAARISKNGGGVGVNVSRIRATGS 285
>sp|Q7T6Y8|RIR1_MIMIV Ribonucleoside-diphosphate reductase large subunit OS=Acanthamoeba
polyphaga mimivirus GN=RNR1 PE=3 SV=2
Length = 881
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
CFLL + DS+E I + +C LISK AGGIG+++ NIR G
Sbjct: 287 CFLLGIG-DSLEEISECWKECALISKHAGGIGIHMTNIRVEG 327
>sp|O66503|RIR1_AQUAE Ribonucleoside-diphosphate reductase subunit alpha OS=Aquifex
aeolicus (strain VF5) GN=nrdA PE=3 SV=1
Length = 801
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKIS 69
+CF+L + +D + I + G+ISK AGG+G+ + IRATG ++K
Sbjct: 234 SCFVLTVDDDLFD-IFDNVKKAGMISKFAGGLGVYLGKIRATGAPIRKFK 282
>sp|Q82KE2|NRDJ_STRAW Vitamin B12-dependent ribonucleotide reductase OS=Streptomyces
avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /
NCIMB 12804 / NRRL 8165 / MA-4680) GN=nrdJ PE=3 SV=1
Length = 964
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRAT 61
CF+LA+ +DS+E IL + + G+I K G GLN+ IR++
Sbjct: 159 CFILAV-DDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS 198
>sp|O69981|NRDJ_STRCO Vitamin B12-dependent ribonucleotide reductase OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=nrdJ
PE=2 SV=1
Length = 967
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRAT 61
CF+L++ +DS+E IL + + G+I K G GLN+ IR++
Sbjct: 160 CFILSV-DDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS 199
>sp|O54196|NRDJ_STRC2 Vitamin B12-dependent ribonucleotide reductase OS=Streptomyces
clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 /
NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602)
GN=nrdJ PE=2 SV=2
Length = 961
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRAT 61
CF+L++ +DS+E IL + + G+I K G GLN+ IR++
Sbjct: 160 CFILSV-DDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS 199
>sp|P78027|RIR1_MYCPN Ribonucleoside-diphosphate reductase subunit alpha OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=nrdE PE=3 SV=1
Length = 721
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 18 YFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKIS 69
+ +C+LL + ED++E I T +SK GG+ L + NIR +G +KKI
Sbjct: 173 FVSCYLLRI-EDNMESIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIE 223
>sp|O53767|NRDZ_MYCTU Ribonucleoside-diphosphate reductase NrdZ OS=Mycobacterium
tuberculosis GN=nrdZ PE=2 SV=1
Length = 692
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
CF+L + EDS++ I AT Q + +A GG G ++R G+
Sbjct: 193 CFVLPI-EDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGD 234
>sp|P55982|RIR1_HELPY Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=nrdA PE=3 SV=1
Length = 788
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 29 DSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
D+IEGI ++ + L+SK GGIG + +R+ G
Sbjct: 223 DNIEGIFDSYKEMALLSKYGGGIGWDFSLVRSIG 256
>sp|Q9ZLF9|RIR1_HELPJ Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain J99) GN=nrdA PE=3 SV=1
Length = 788
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 29 DSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
D+IEGI ++ + L+SK GGIG + +R+ G
Sbjct: 223 DNIEGIFDSYKEMALLSKYGGGIGWDFSLVRSIG 256
>sp|P47473|RIR1_MYCGE Ribonucleoside-diphosphate reductase subunit alpha OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=nrdE PE=3 SV=1
Length = 721
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 18 YFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
+ +C+LL + ED++E I T +SK GG+ L + N+R G +KKI
Sbjct: 173 FVSCYLLRI-EDNMESIGRAITTTLQLSKRDGGVALLLSNLREAGAPIKKI 222
>sp|Q9PL93|RIR1_CHLMU Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=nrdA PE=3 SV=1
Length = 1047
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
+C+L +Q+D + I + ++SK AGGIG + IRATG
Sbjct: 457 SCYLSTVQDDLV-NIYKVISDNAMLSKWAGGIGNDWTAIRATG 498
>sp|Q9Z6S5|RIR1_CHLPN Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
pneumoniae GN=nrdA PE=3 SV=1
Length = 1044
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
+C+L +++D + I + L+SK AGGIG + ++RATG +K
Sbjct: 455 SCYLSTVKDD-LSHIYKVISDNALLSKWAGGIGNDWTDVRATGAVIK 500
>sp|P0CH00|RIR1B_MYCS2 Ribonucleoside-diphosphate reductase subunit alpha 2
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=nrdE2 PE=1 SV=1
Length = 722
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKIS 69
+CFLL + ED++E I + +SK GG+ L + NIR G +K I
Sbjct: 185 SCFLLRI-EDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIE 233
>sp|P0CG99|RIR1A_MYCS2 Ribonucleoside-diphosphate reductase subunit alpha 1
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=nrdE1 PE=1 SV=1
Length = 722
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKIS 69
+CFLL + ED++E I + +SK GG+ L + NIR G +K I
Sbjct: 185 SCFLLRI-EDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIE 233
>sp|Q9CBQ0|RIR1_MYCLE Ribonucleoside-diphosphate reductase subunit alpha OS=Mycobacterium
leprae (strain TN) GN=nrdE PE=3 SV=2
Length = 721
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKIS 69
+CFLL + ED++E I + +SK GG+ L + NIR G +K I
Sbjct: 184 SCFLLRI-EDNMESIGRSVNSALQLSKRGGGVALLLSNIREHGAPIKNIE 232
>sp|P0A5W8|RIR1_MYCTU Ribonucleoside-diphosphate reductase subunit alpha OS=Mycobacterium
tuberculosis GN=nrdE PE=1 SV=1
Length = 725
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKIS 69
+CFLL + ED++E I + +SK GG+ L + NIR G +K I
Sbjct: 188 SCFLLRV-EDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIE 236
>sp|P0A5W9|RIR1_MYCBO Ribonucleoside-diphosphate reductase subunit alpha OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=nrdE PE=1
SV=1
Length = 725
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKIS 69
+CFLL + ED++E I + +SK GG+ L + NIR G +K I
Sbjct: 188 SCFLLRV-EDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIE 236
>sp|O84834|RIR1_CHLTR Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=nrdA PE=3 SV=2
Length = 1047
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
+C+L +Q D++ I ++SK AGGIG + IRATG +K
Sbjct: 457 SCYLSTVQ-DNLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIK 502
>sp|Q08698|RIR3_SALTY Ribonucleoside-diphosphate reductase 2 subunit alpha OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=nrdE PE=1 SV=2
Length = 714
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKIS 69
+CFLL + ED++E I +SK GG+ + N+R G +K+I
Sbjct: 177 SCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIE 225
>sp|P39452|RIR3_ECOLI Ribonucleoside-diphosphate reductase 2 subunit alpha OS=Escherichia
coli (strain K12) GN=nrdE PE=3 SV=3
Length = 714
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
+CFLL + ED++E I +SK GG+ + N+R G +K+I
Sbjct: 177 SCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRI 224
>sp|O64173|NRDEB_BPSPB Ribonucleoside-diphosphate reductase nrdEB subunit alpha
OS=Bacillus phage SPbeta GN=bnrdE PE=3 SV=1
Length = 1084
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
+CFLL + DS+ I +SK GG+ LN++ +RA G +K +
Sbjct: 168 SCFLLEVG-DSLNDISRAIDISMQLSKLGGGVALNLNKLRAKGEAIKDV 215
>sp|O31875|NRDEB_BACSU Ribonucleoside-diphosphate reductase NrdEB subunit alpha
OS=Bacillus subtilis (strain 168) GN=nrdEB PE=3 SV=2
Length = 1084
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
+CFLL + DS+ I +SK GG+ LN++ +RA G +K +
Sbjct: 168 SCFLLEVG-DSLNDISRAIDISMQLSKLGGGVALNLNKLRAKGEAIKDV 215
>sp|P50620|RIR1_BACSU Ribonucleoside-diphosphate reductase subunit alpha OS=Bacillus
subtilis (strain 168) GN=nrdE PE=3 SV=1
Length = 700
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
+CFLL + DS+ I +SK GG+ LN+ +RA G +K +
Sbjct: 169 SCFLLEVN-DSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDV 216
>sp|Q6R7H4|RIR1_OSHVF Ribonucleoside-diphosphate reductase large subunit OS=Ostreid
herpesvirus 1 (isolate France) PE=3 SV=1
Length = 835
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPS 80
CFLL M D++ I Q + GGIG+N +RATG+ KI + S
Sbjct: 238 CFLLDMG-DNMVSITKKVAQTMTLIAKNGGIGINFSKLRATGS---KIGMAGKSSGIGGK 293
Query: 81 LNPFIR 86
LN F R
Sbjct: 294 LNLFDR 299
>sp|Q9SS67|PER28_ARATH Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=2 SV=1
Length = 321
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 30 SIEGILATFTQCGL-ISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNP 83
S+EG+L+ F G+ + + +G + I + GN + +++ F+ DPS++P
Sbjct: 164 SVEGMLSFFGNKGMNVFDSVALLGAHTVGIASCGNFVDRVTNFQGTGLPDPSMDP 218
>sp|Q9VN12|NCKXH_DROME Probable sodium/potassium/calcium exchanger CG1090 OS=Drosophila
melanogaster GN=CG1090 PE=2 SV=3
Length = 642
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 48 AGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIRECGIYVSAPVSTYLLNPILFL 107
+GG ++ A GND K + + ++DP L P E G+ A VS Y++ PI FL
Sbjct: 403 SGGQVVSTQATSAGGNDYYKSTDKQREPRRDPLLRPM--EGGL--PALVSWYVVYPIHFL 458
>sp|Q3V089|RBM44_MOUSE RNA-binding protein 44 OS=Mus musculus GN=Rbm44 PE=1 SV=1
Length = 1013
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 26 MQEDSIEGILATFTQC--GLISKAAGGIGLNVHNIRATGNDLKKISKFEE--------PS 75
+ EDS + + +C ++K L+V ++ + D K FE+ PS
Sbjct: 173 VDEDSQQEYHSAELECISAHLAKTVSRSSLDVSELKTSSYDFKCGGNFEDNHGKLESGPS 232
Query: 76 KKDPSLNPFIRECGIYVSAPVSTYLL 101
SLN F +EC + VS S+ +L
Sbjct: 233 PSLESLNGFAQECSLQVSTSQSSDML 258
>sp|O83972|RIR1_TREPA Ribonucleoside-diphosphate reductase subunit alpha OS=Treponema
pallidum (strain Nichols) GN=nrdA PE=3 SV=1
Length = 845
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 29 DSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
DS++GI + +SK GG+GL +RA G
Sbjct: 326 DSLDGIYRSIDNFSQVSKFGGGMGLYFGKVRAVG 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,754,855
Number of Sequences: 539616
Number of extensions: 2229919
Number of successful extensions: 4297
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4260
Number of HSP's gapped (non-prelim): 58
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)