Query psy15805
Match_columns 150
No_of_seqs 126 out of 685
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 21:49:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1112|consensus 100.0 1.8E-30 4E-35 237.4 2.8 106 5-119 202-317 (796)
2 PRK09209 ribonucleotide-diphos 100.0 6.6E-30 1.4E-34 239.3 5.5 112 7-128 223-346 (761)
3 PRK07187 ribonucleotide-diphos 100.0 1.2E-29 2.6E-34 236.6 6.5 112 7-128 155-279 (721)
4 PRK06539 ribonucleotide-diphos 100.0 1.3E-29 2.8E-34 239.1 5.7 113 7-129 213-337 (822)
5 PRK07207 ribonucleotide-diphos 100.0 1.3E-29 2.9E-34 242.0 5.3 113 7-129 360-484 (965)
6 PRK12365 ribonucleotide-diphos 100.0 1.3E-29 2.9E-34 243.4 5.2 114 7-130 443-568 (1046)
7 PRK08447 ribonucleotide-diphos 100.0 1.7E-29 3.8E-34 237.5 5.9 114 7-130 202-327 (789)
8 PRK12364 ribonucleotide-diphos 100.0 2E-29 4.3E-34 237.9 5.7 112 7-128 302-425 (842)
9 PRK07088 ribonucleotide-diphos 100.0 2.5E-29 5.3E-34 235.7 5.7 112 7-128 225-348 (764)
10 PLN02437 ribonucleoside--dipho 100.0 5.2E-29 1.1E-33 234.6 5.5 113 7-128 204-329 (813)
11 PRK07632 ribonucleotide-diphos 99.9 1.2E-28 2.5E-33 229.4 5.3 113 7-129 154-279 (699)
12 PRK09103 ribonucleotide-diphos 99.9 5.5E-28 1.2E-32 226.5 6.4 114 7-130 208-333 (758)
13 PRK07306 ribonucleotide-diphos 99.9 7.2E-28 1.6E-32 224.6 5.8 112 7-128 157-281 (720)
14 PRK08188 ribonucleotide-diphos 99.9 8.8E-28 1.9E-32 224.0 5.9 112 7-128 163-287 (714)
15 PHA02572 nrdA ribonucleoside-d 99.9 2.1E-27 4.5E-32 222.4 5.9 112 7-128 209-332 (753)
16 PRK06406 ribonucleotide-diphos 99.9 4.1E-27 8.8E-32 221.0 6.5 104 7-120 238-350 (771)
17 PRK08665 ribonucleotide-diphos 99.9 6.2E-27 1.3E-31 218.9 6.5 122 7-138 83-216 (752)
18 TIGR02506 NrdE_NrdA ribonucleo 99.9 5.4E-27 1.2E-31 214.2 5.9 115 7-130 67-193 (617)
19 PRK09102 ribonucleotide-diphos 99.9 1.1E-26 2.4E-31 212.9 5.9 113 7-130 77-201 (601)
20 PRK06948 ribonucleotide reduct 99.9 1.5E-26 3.3E-31 211.5 6.2 113 7-130 73-201 (595)
21 cd02888 RNR_II_dimer Class II 99.9 1.9E-26 4.1E-31 205.2 6.3 106 7-121 19-134 (464)
22 cd01679 RNR_I Class I ribonucl 99.9 1.3E-26 2.9E-31 206.2 5.0 113 7-129 38-162 (460)
23 PRK08115 ribonucleotide-diphos 99.9 2.2E-26 4.7E-31 218.2 6.4 104 7-119 174-287 (858)
24 TIGR02510 NrdE-prime ribonucle 99.9 2.2E-26 4.7E-31 210.0 6.0 117 7-135 76-203 (571)
25 TIGR02504 NrdJ_Z ribonucleosid 99.9 6.7E-26 1.4E-30 205.8 6.0 103 7-119 64-176 (586)
26 PRK06556 vitamin B12-dependent 99.9 7E-25 1.5E-29 209.8 6.0 103 7-120 137-250 (953)
27 PRK07562 ribonucleotide-diphos 99.9 1.1E-23 2.4E-28 204.9 5.5 95 14-119 192-299 (1220)
28 PF02867 Ribonuc_red_lgC: Ribo 99.9 1.2E-22 2.7E-27 182.3 5.4 112 18-139 1-129 (538)
29 PRK08332 ribonucleotide-diphos 99.2 4.5E-12 9.6E-17 128.0 2.9 73 7-86 259-331 (1740)
30 COG0209 NrdA Ribonucleotide re 99.0 4.7E-11 1E-15 110.5 1.3 79 6-135 168-258 (651)
31 PRK08332 ribonucleotide-diphos 99.0 7.8E-11 1.7E-15 119.2 0.8 89 38-137 745-848 (1740)
32 cd01676 RNR_II_monomer Class I 98.5 2.8E-07 6.2E-12 86.5 6.6 87 23-119 165-282 (658)
33 cd00576 RNR_PFL Ribonucleotide 98.4 1.4E-07 3.1E-12 79.7 3.2 79 11-96 15-113 (401)
34 TIGR02505 RTPR ribonucleoside- 98.4 6.4E-07 1.4E-11 85.0 6.7 59 25-90 179-243 (713)
35 PF07237 DUF1428: Protein of u 60.6 13 0.00029 28.1 3.6 36 18-53 2-37 (103)
36 cd01676 RNR_II_monomer Class I 26.0 56 0.0012 31.6 2.6 36 17-57 89-124 (658)
37 PF10585 UBA_e1_thiolCys: Ubiq 22.0 9.8 0.00021 24.4 -2.3 23 114-136 20-42 (45)
No 1
>KOG1112|consensus
Probab=99.96 E-value=1.8e-30 Score=237.39 Aligned_cols=106 Identities=42% Similarity=0.577 Sum_probs=101.8
Q ss_pred ccccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchH
Q psy15805 5 VDSTCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPF 84 (150)
Q Consensus 5 ~~~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpF 84 (150)
+-.||||||+++||||||++.|+|||||||||++++||+|+|.+||||+++++||++||+|+||||.|+ |+||+
T Consensus 202 sPTLfnagt~rPQlsSCFL~tmk~DSIeGiydtlkqcA~IsKsaGGIGl~vh~IRatGs~i~gTnGtSN------GliPm 275 (796)
T KOG1112|consen 202 SPTLFNAGTPRPQLSSCFLLTMKDDSIEGIYDTLKQCAMISKSAGGIGLNVHNIRATGSYIAGTNGTSN------GLIPM 275 (796)
T ss_pred CchhhhcCCCCccccceEEEEecccchHHHHHHHHHhhhhhhccCcceEEEeeeeccCcEEecCCCCCC------Cccch
Confidence 446899999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhhhhhhcc----------eeeecccceEEEeecCCCCCcCCC
Q psy15805 85 IRECGIYVSAP----------VSTYLLNPILFLITPCPPLTLRPR 119 (150)
Q Consensus 85 lk~~d~~vsa~----------~s~~~~~~~~~~~~~~~~~~~~~~ 119 (150)
+|+|+.+..-+ .+.| |||||..|--| |+||.|
T Consensus 276 irV~NntaRYvdQGg~kRpGafAiy-LEPWHadifdF--lelrKn 317 (796)
T KOG1112|consen 276 IRVFNNTARYVDQGGNKRPGAFAIY-LEPWHADIFDF--LELRKN 317 (796)
T ss_pred hhhhcchhhHhhcCCCCCCceeEEE-echhHHHHHHH--HHHHhc
Confidence 99999998876 7889 99999999999 999987
No 2
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.96 E-value=6.6e-30 Score=239.34 Aligned_cols=112 Identities=25% Similarity=0.406 Sum_probs=106.5
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++ +||++|||++++++|+++|.|||||+|||+|||+|++|+|++|+|+ |+|||||
T Consensus 223 tl~NaGt~~~qlsSCFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ss------G~vp~lk 295 (761)
T PRK09209 223 TLANAGKVGGQLSSCFIDTV-DDSLQGIYDSNTDVARVSKHGGGVGAYLGKVRSRGSDIRGFKGVSS------GVIPWIK 295 (761)
T ss_pred HHhcCCCCCCCeeeeEeCCc-cccHHHHHHHHHHHHHHHHcCCeEEecccccCCCCCcccCCCCCCc------CHHHHHH
Confidence 48999999999999999999 9999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCC---ccceeeccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQ 128 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 128 (150)
+||.++.++ ..+| |+|||-.|+.| |++|.+ ..+|+|.++
T Consensus 296 ~~n~~~~~v~QgG~RrGA~avy-L~~wHpDI~~F--L~~K~~~gde~~R~~~l~ 346 (761)
T PRK09209 296 QLNNTAVSVDQLGQRKGAIAVY-LDVWHKDIESF--LDLRLNNGDERLRAHDVF 346 (761)
T ss_pred HHHHHHHHHHcCCccCCceeEE-EeCCcccHHHH--HHhhcccccHHHhhhcch
Confidence 999999888 7889 99999999999 999988 468898763
No 3
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.96 E-value=1.2e-29 Score=236.58 Aligned_cols=112 Identities=23% Similarity=0.338 Sum_probs=106.6
Q ss_pred ccccCCCC-CCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHH
Q psy15805 7 STCPPGLQ-VLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFI 85 (150)
Q Consensus 7 ~l~NAGT~-~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFl 85 (150)
-|+|||++ ++|||||||++| +|||+|||++++++|+++|.|||||+|||+|||+|++|+|++|+|+ |+||||
T Consensus 155 tl~NaG~~~~~qlsSCFl~~v-~Dsl~sI~~~~~~~a~isK~GGGiG~~~s~lR~~Gs~I~g~~g~ss------Gvvp~m 227 (721)
T PRK07187 155 TFLNAGKKRRGEYISCYLLRV-EDNMESISRAISTSLQLSKRGGGVALCLTNLREIGAPIKGIENQAT------GIIPVM 227 (721)
T ss_pred ccccCCCCCCCCcCceEeccC-CCCHHHHHHHHHHHHHHHhhCCeeeeeccccCCCCCcccCCCCCCC------ChHhHH
Confidence 48999998 699999999999 9999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc---cceeeccc
Q psy15805 86 RECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQ 128 (150)
Q Consensus 86 k~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 128 (150)
|+||++++++ ..+| |++||-.|+.| |++|.+. -.|+|.++
T Consensus 228 k~~~~~~~~v~QgG~RrGA~~vy-L~~wHpDI~eF--L~~K~~~gde~~r~~~l~ 279 (721)
T PRK07187 228 KLLEDSFSYANQLGQRQGAGAVY-LHAHHPDVLTF--LDTKRENADEKIRIKSLS 279 (721)
T ss_pred HHHHHHHHHHHcCCcccCceEEE-EeCCCccHHHH--HHHhccccchhhhhccch
Confidence 9999999887 7889 99999999999 9999985 48998887
No 4
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.96 E-value=1.3e-29 Score=239.07 Aligned_cols=113 Identities=26% Similarity=0.388 Sum_probs=106.6
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||++| +||+++||++++++|+|+|.|||||+|||+|||+|+.|+|++|+|+ |+|||||
T Consensus 213 tL~NaGt~~~qlsSCFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ss------G~vpflk 285 (822)
T PRK06539 213 TLVNAGTPYPQLSNCFVMEM-QDDIEHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTST------GPIPFMH 285 (822)
T ss_pred hhhcCCCCCCCCceeeeccC-CCcHHHHHHHHHHHHHHHhhCCceeecccccCCCCCcccCCCCCCC------ChhhHHH
Confidence 48999999999999999999 8999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCC---ccceeecccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQW 129 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 129 (150)
+||.++.++ ...| |+|||-.|+.| |++|.+ ...|+|.++-
T Consensus 286 ~~d~~~~~v~QgG~RrGA~~~y-L~~wH~DI~eF--L~lk~n~g~e~~r~~~~n~ 337 (822)
T PRK06539 286 TIDSVLRAVSRGGKKFGALCFY-MENWHMDFPEF--LDLRQNSGDPYRRTRTANT 337 (822)
T ss_pred HHHHHHHHHHhCCCCcCceEEE-ecCCCcCHHHH--HHHhhcCCchhhhhccCce
Confidence 999999998 7788 99999999999 999987 5567887763
No 5
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.95 E-value=1.3e-29 Score=242.01 Aligned_cols=113 Identities=27% Similarity=0.397 Sum_probs=106.8
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||++| +||++|||++++++|+++|+|||||+|||+|||+|++|+|++|+|+ |+|||||
T Consensus 360 tl~NaGt~~~qlsSCfl~~v-~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~lR~~Gs~I~g~~g~ss------Gvvpflk 432 (965)
T PRK07207 360 TLFNSGTLRPQLSSCYLTTV-PDDLDGIYEAIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQ------GVVPFLK 432 (965)
T ss_pred HHhcCCCCCCCeeeeEeCCC-cccHHHHHHHHHHHHHHHhcCCeeeecccccCCCCCccCCCCCCCC------ChhHHHH
Confidence 48999999999999999999 9999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCC---ccceeecccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQW 129 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 129 (150)
+||.++.++ ..+| |+|||-.|+.| |++|.| ...|+|.++-
T Consensus 433 ~~n~~~~~v~QgG~R~GA~~vy-L~~wH~DI~eF--L~lk~~~gde~~r~~~l~~ 484 (965)
T PRK07207 433 VVNDTAVAVNQGGKRKGAVCAY-LETWHLDIEEF--LELRKNTGDDRRRTHDMNT 484 (965)
T ss_pred HHHHHHHHHHcCCcCccceeeE-ecCCCccHHHH--HHHhhccCchhhHhhcCch
Confidence 999999998 7889 99999999999 999987 3568887763
No 6
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=99.95 E-value=1.3e-29 Score=243.45 Aligned_cols=114 Identities=26% Similarity=0.365 Sum_probs=107.9
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||++| +||++|||++++++|+++|+|||||+|||+|||+|++|+|++|+|+ |+|||||
T Consensus 443 tl~NaGt~~~qlsSCfl~~v-~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ss------G~vpflk 515 (1046)
T PRK12365 443 TLFNSGMRHSQLSSCYLSTV-QDDLVHIYKVISDNAMLSKWAGGIGNDWTAVRATGALIKGTNGKSQ------GVIPFIK 515 (1046)
T ss_pred hhhcCCCCCCCceeeEeCCC-cccHHHHHHHHHHHHHHHhcCCceeecccccCCCCCccCCCCCCCC------ChHhHHH
Confidence 48999999999999999999 9999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCC---ccceeeccccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQWS 130 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 130 (150)
+||.++.++ ...| |+|||-.|+.| |++|.| ...|+|.++.+
T Consensus 516 ~~n~~~~~v~QgG~R~GA~~~y-L~~wH~DI~eF--L~lk~~~g~e~~r~~~l~~~ 568 (1046)
T PRK12365 516 VANDTAVAVNQGGKRKGAVCVY-LEVWHLDYEDF--LELRKNTGDERRRTHDINTA 568 (1046)
T ss_pred HHHHHHHHHHhCCcccCceeEE-EeCCCccHHHH--HHHhhhcccHHHHhhccchh
Confidence 999999988 7889 99999999999 999987 45788887744
No 7
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.95 E-value=1.7e-29 Score=237.46 Aligned_cols=114 Identities=24% Similarity=0.387 Sum_probs=107.3
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++ +||++|||++++++|+++|.|||||+|||+|||+|++|+|++|+|+ |+|||||
T Consensus 202 tL~Nagt~~~qlsSCFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ss------Gvvp~~k 274 (789)
T PRK08447 202 TLSNARTTRHQLSSCYIGST-PDNIEGIFDSYKEMALLSKYGGGIGWDWSKVRAMGSYIDGHKNAAG------GIIPFLK 274 (789)
T ss_pred cccccCCCCCCeeeeEeCCC-CCCHHHHHHHHHHHHHHHhcCCeEeecccccCCCCCccCCCCCCCC------ChhhHHH
Confidence 48999999999999999999 9999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCC---ccceeeccccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQWS 130 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 130 (150)
+||.++.++ ..+| |+|||-.|+.| |++|.+ ...|+|.++.+
T Consensus 275 ~~n~~~~~v~QgG~RrGA~avy-L~~wHpDI~~F--L~~K~~~g~e~~r~~~l~~s 327 (789)
T PRK08447 275 ITNDIAIAVDQLGTRKGAIAVY-LEPWHMDISDF--IDLRKNSGEERRRAHDLFPA 327 (789)
T ss_pred HHHHHHHHHHhCCccccceEEE-EeCCCccHHHH--HHHhhcccchhhhhhcCeee
Confidence 999999998 7889 99999999999 999987 35788877643
No 8
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=99.95 E-value=2e-29 Score=237.85 Aligned_cols=112 Identities=23% Similarity=0.364 Sum_probs=106.2
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++ +||++|||++++++|+++|.|||||+|||+|||+|++|+|++|+|+ |+|||||
T Consensus 302 tl~Nagt~~~qlsSCFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ss------G~vp~lk 374 (842)
T PRK12364 302 TLSNARKPFHQLSSCFIDTV-PDSLDGIYRSIDNFAQVSKFGGGMGLYFGKVRAVGSNIRGFQGVAG------GVIRWIK 374 (842)
T ss_pred HHhcCCCCCCCeeeeEeCCC-CccHHHHHHHHHHHHHHHhcCCeeeeeccccCCCCCcccCcCCCCC------ChHHHHH
Confidence 48999999999999999999 9999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc---cceeeccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQ 128 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 128 (150)
+||.++.++ ..+| |+|||-.|+.| |++|.+. ..|+|.++
T Consensus 375 ~~~~~~~~v~QgG~RrGA~~vy-L~~wH~DI~~F--L~~K~~~g~e~~r~~~l~ 425 (842)
T PRK12364 375 LANDTAVAVDQLGMRQGAVAVY-LDVWHKDIPEF--LQLRTNNGDDRMKAHDVF 425 (842)
T ss_pred HHHHHHHHHHhCCcCCCceeEE-EeCCCccHHHH--HHHhccCCchhhhhhhcc
Confidence 999999887 7888 99999999999 9999983 57888764
No 9
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.95 E-value=2.5e-29 Score=235.68 Aligned_cols=112 Identities=18% Similarity=0.272 Sum_probs=105.4
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++ +||+++||++++++|+++|.|||||+|||+|||+|++|+|++|+|+ |+|||||
T Consensus 225 tl~NaGt~~~qlsSCFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ss------Gvvp~lk 297 (764)
T PRK07088 225 TLSNAGTPFYQLSSCFISVV-DDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGFKNASG------GVIPWIK 297 (764)
T ss_pred chhcCCCCCCCccceeecCc-cccHHHHHHHHHHHHHHHhhCCeEEecccccCCCCCcccCCCCCCC------ChhhHHH
Confidence 48999999999999999999 9999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc---cceeeccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQ 128 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 128 (150)
+||.++.++ ..+| |+|||-.|+.| |++|.+. -.|+|.++
T Consensus 298 ~~n~~~~~v~QgG~R~GA~avy-L~~wHpDI~~F--L~lK~~~g~e~~r~~~l~ 348 (764)
T PRK07088 298 LYNDTAIAVDQLGKRKGGAAIT-LDIWHKDIPEF--LDLKTNNGDDRRKAHDIF 348 (764)
T ss_pred HHHHHHHHHHhCCccccceeEE-EeCCCccHHHH--HHhccccchhHHHHhhCh
Confidence 999999988 7889 99999999999 9999883 35677655
No 10
>PLN02437 ribonucleoside--diphosphate reductase large subunit
Probab=99.95 E-value=5.2e-29 Score=234.63 Aligned_cols=113 Identities=35% Similarity=0.533 Sum_probs=106.1
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++++||+++||++++++|+|+|+|||||+|||+|||+|+.|+|++|+|+ |+|||||
T Consensus 204 tL~naGt~~~qlsSCFl~~~~~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ss------G~vpflk 277 (813)
T PLN02437 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGLSVHNIRATGSYIRGTNGTSN------GIVPMLR 277 (813)
T ss_pred hhhcCCCCCCCcceeeecCCCcchHHHHHHHHHHHHHHHhcCCeEeecccccCCCCCcccCCCCCCC------CchhHHH
Confidence 4899999999999999999878999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc----------eeeecccceEEEeecCCCCCcCCC---ccceeeccc
Q psy15805 87 ECGIYVSAP----------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQ 128 (150)
Q Consensus 87 ~~d~~vsa~----------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 128 (150)
+||.++.++ ..+| |+|||-.|+.| |++|.+ ...|+|.++
T Consensus 278 ~~n~~~~~v~QgGg~RrGA~~vy-L~~wH~DI~eF--L~lK~~~g~e~~r~~~l~ 329 (813)
T PLN02437 278 VFNDTARYVDQGGGKRKGAFAIY-LEPWHADIFEF--LDLRKNHGKEEHRARDLF 329 (813)
T ss_pred HHHHHHHHHHcCCCccccceeEE-EeCCCccHHHH--HHHhcccCcHhHHHHhcc
Confidence 999999887 6778 99999999999 999977 357788776
No 11
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.95 E-value=1.2e-28 Score=229.37 Aligned_cols=113 Identities=23% Similarity=0.297 Sum_probs=105.9
Q ss_pred ccccCCCC-CCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHH
Q psy15805 7 STCPPGLQ-VLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFI 85 (150)
Q Consensus 7 ~l~NAGT~-~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFl 85 (150)
-|+|||++ ++||+||||++| +||++||+++++++|+++|.|||||+|||+|||+|++|+|++|+|+ |+||||
T Consensus 154 tl~NaG~~~~~qlsSCFl~~v-~Dsl~sI~~~~~~~a~lsK~GGGvG~~~s~lR~~Gs~I~g~~g~ss------Gvvp~m 226 (699)
T PRK07632 154 TFLNAGRARRGELVSCFLLEV-DDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGAAK------GVLPVA 226 (699)
T ss_pred cccCCCCCCCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCeEEecccccCCCCCcccCCCCCCC------CHHHHH
Confidence 58999997 699999999999 9999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhhhhhcc---------eeeecccceEEEeecCCCCCcCCC---ccceeecccc
Q psy15805 86 RECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQW 129 (150)
Q Consensus 86 k~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 129 (150)
|+||++++++ ..+| |+|||-.|+.| |++|.+ ...|+|.++-
T Consensus 227 k~~d~~~~~v~QgG~RrGA~avy-L~~wHpDI~~F--L~~K~~~gde~~r~~~l~~ 279 (699)
T PRK07632 227 KLLEGGFSYADQLGQRPGAGAVY-LNIFHYDVEEF--LDTKKVNADEDLRLSTIST 279 (699)
T ss_pred HHHHHHHHHHHhcCccccceeEE-EeCCCccHHHH--HHHhccccchhhHHHhcch
Confidence 9999999887 7889 99999999999 999986 4577777663
No 12
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.94 E-value=5.5e-28 Score=226.46 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=106.2
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++ +||+++||++++++|+++|.|||||+|||+|||+|++|+|++|+|+ |+|||||
T Consensus 208 ~l~naGt~~~qlsSCFl~~v-~Dsl~~I~~~~~~~a~~~s~gGGiG~~~s~lR~~Gs~I~g~~g~ss------G~vp~mk 280 (758)
T PRK09103 208 IMSGVRTPTRQFSSCVLIEC-GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT------GCIPFYK 280 (758)
T ss_pred hhcCCCCCCCCeeEEEecCC-CCCHHHHHHHHHHHHHHHhcCCeEEeeccccCCCCCccCCCCCCCC------ChHHHHH
Confidence 37899999999999999999 9999999999999999888899999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCC---ccceeeccccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQWS 130 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 130 (150)
+||.++.++ ...| |+|||-.|+.| |++|.+ ...|+|.++.+
T Consensus 281 ~~d~~~~~v~QgG~RrGA~~vy-L~~wHpDI~~F--L~~K~~~g~e~~r~~~l~~s 333 (758)
T PRK09103 281 HFQTAVKSCSQGGVRGGAATLF-YPIWHLEVESL--LVLKNNRGVEENRVRHMDYG 333 (758)
T ss_pred HHHHHHHHHHcCCCCCcceEEE-ecCCCccHHHH--HHhcccCCchhhhHhhCchh
Confidence 999999987 7888 99999999999 999987 46788877643
No 13
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.94 E-value=7.2e-28 Score=224.60 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=105.9
Q ss_pred ccccCCCC-CCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHH
Q psy15805 7 STCPPGLQ-VLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFI 85 (150)
Q Consensus 7 ~l~NAGT~-~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFl 85 (150)
-|+|||++ ++||+||||++| +||+++|+++++++++++|.|||||+|||+|||+|++|+|++|+|+ |+||||
T Consensus 157 tl~NaG~~~~~~lsSCFl~~v-~Dsl~sI~~~~~~~a~lsk~GGGvG~~~s~lR~~Gs~I~g~~g~ss------Gvvp~m 229 (720)
T PRK07306 157 SFLNAGRARRGELVSCFLIQV-TDDMNSIGRSINSALQLSRIGGGVGINLSNLREAGAPIKGYEGAAS------GVVPVM 229 (720)
T ss_pred CeecCCCCCCCCeeeEEeCCC-CCChHHHHHHHHHHHHHHhcCCeeEecccccCCCCCcccCCCCCCC------CHHHHH
Confidence 48999997 599999999999 9999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc---cceeeccc
Q psy15805 86 RECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQ 128 (150)
Q Consensus 86 k~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 128 (150)
|+||.+++++ ..+| |++||-.|+.| |++|.+. -.|+|.++
T Consensus 230 k~~d~~~~~v~QgG~RrGA~~vy-L~~wHpDI~~F--L~~K~~~gde~~R~~nl~ 281 (720)
T PRK07306 230 KLFEDSFSYSNQLGQRQGAGVVY-LNVFHPDIIAF--LSTKKENADEKVRVKTLS 281 (720)
T ss_pred HHHHHHHHHHhcCCCcCcceEEE-EeCCCccHHHH--HHHhcccccchhhhcccc
Confidence 9999999988 7888 99999999999 9999873 58888876
No 14
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.94 E-value=8.8e-28 Score=224.01 Aligned_cols=112 Identities=23% Similarity=0.312 Sum_probs=105.6
Q ss_pred ccccCCCC-CCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHH
Q psy15805 7 STCPPGLQ-VLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFI 85 (150)
Q Consensus 7 ~l~NAGT~-~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFl 85 (150)
.|+|||++ ++||+||||+.| +||++||+++++++++++|.|||||+|||+|||+|++|++++|+|+ |+||||
T Consensus 163 tl~NaG~~~~g~lsSCFl~~v-~DslesI~~~~~~~~~lsK~GGGVG~~ls~lR~~Gs~Ikg~~g~ss------Gvvp~m 235 (714)
T PRK08188 163 TFLNCGKKQRGELVSCFLLRI-EDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKRIENQSS------GVIPVM 235 (714)
T ss_pred ceecCCCCCCCcceeEEecCC-CCCHHHHHHHHHHHHHHHhhCCeEEEeccccCCCCCcccCCCCCCC------CHHHHH
Confidence 58999998 999999999999 9999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc---cceeeccc
Q psy15805 86 RECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQ 128 (150)
Q Consensus 86 k~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 128 (150)
|+||++++++ ..+| |++||-.|+.| |++|++. ..|+|.++
T Consensus 236 kl~d~~~~~v~Q~G~R~GA~avy-L~~~HpDI~~F--L~~K~~~gde~~R~~~l~ 287 (714)
T PRK08188 236 KLLEDAFSYANQLGARQGAGAVY-LHAHHPDILRF--LDTKRENADEKIRIKTLS 287 (714)
T ss_pred HHHHHHHHHHHhcCCCCCceeEE-ecCCCchHHHH--HHHhhcccchhhhhhhch
Confidence 9999999977 7789 99999999999 9999884 47888765
No 15
>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional
Probab=99.94 E-value=2.1e-27 Score=222.41 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=104.0
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++ +||+++||++++++|++.+.|||||+|||+|||+|+.|+|++|+|+ |+|||||
T Consensus 209 tl~naGt~~~qlsSCFl~~v-~Dsl~~I~~~~~~~a~~~sk~gGiG~~~s~iR~~Gs~I~g~~g~ss------G~vp~lk 281 (753)
T PHA02572 209 IMAGVRTPTRQFSSCVVIES-GDSLDSINKTAMAIVKYISKRAGIGINAGMIRAEGSKIRGGEVRHT------GVIPFWK 281 (753)
T ss_pred hhhcCCCCCCcccceeeCCC-CCCHHHHHHHHHHHHHHHHhCCeEEeeccccCCCCCccCCCCCCCC------ChhhHHH
Confidence 48999999999999999999 9999999999999997777778999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc---cceeeccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQ 128 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 128 (150)
+||.++.++ ..+| |+|||-.|+.| |++|.+. ..|+|.++
T Consensus 282 ~~d~~~~~v~QgG~R~GA~~vy-L~~wHpDI~~F--L~~K~~~g~e~~r~~~l~ 332 (753)
T PHA02572 282 HFQTAVKSCSQGGIRGGAATAY-YPIWHLEVEDL--LVLKNNKGVEENRIRHLD 332 (753)
T ss_pred HHHHHHHHHhcCCcccCceEEE-EeCCCcCHHHH--HHHhcccCcchhhhhhhh
Confidence 999999987 7888 99999999999 9999873 57777766
No 16
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.93 E-value=4.1e-27 Score=221.03 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=98.7
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++ +||+++||++++++|+|+|.|||||+|||+|||+|+.|++++|.|+ |+||||+
T Consensus 238 ~l~NaG~~~~qlssCFvl~v-~Dsle~I~~~~~~~a~i~k~GGGvG~~~S~iRp~G~~i~~~~g~ss------G~vsfm~ 310 (771)
T PRK06406 238 TLMNAGTKLGQLSACFVLPV-PDSIEGIFNALKYTAMIHKSGGGTGFSFSRLRPKDDIVASTKGVAS------GPLSFMR 310 (771)
T ss_pred HHhcCCCCCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCceEEeccccCCCCCccCCCCCcCC------ChhhHHH
Confidence 48999999999999999999 9999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS 120 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~ 120 (150)
+||.++.++ ...| |++||-.|+.| +++|...
T Consensus 311 ~~d~~~~~i~QGG~RrGA~m~~-L~~~HpDI~eF--I~~K~~~ 350 (771)
T PRK06406 311 IFDVTTDVIKQGGKRRGANMGI-LSYHHPDIMEF--ITSKDSE 350 (771)
T ss_pred HHHHHHHHHHcCCccccceEEE-ecCCCccHHHH--HHhcccc
Confidence 999999998 4556 99999999999 9999743
No 17
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.93 E-value=6.2e-27 Score=218.87 Aligned_cols=122 Identities=22% Similarity=0.261 Sum_probs=106.0
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++ +||+++||++++++|+|+|+|||||+|||+|||+|++|++++|+|+ |+|||||
T Consensus 83 ~l~naG~~~~qlssCFv~~v-~Dsl~~I~~~~~~~a~i~k~GGGvG~~~S~lRp~G~~v~~~~g~as------Gpvsfm~ 155 (752)
T PRK08665 83 TLMNAGRELGQLSACFVLPV-GDSIEEIFDAVKHAALIHKSGGGTGFSFSRLRPKNDRVGSTGGVAS------GPVSFMR 155 (752)
T ss_pred HHhcCCCCCCcccceeecCC-CCCHHHHHHHHHHHHHHHhcCCeEEEeccccCCCCCcccCCCCCCC------CchhHHH
Confidence 48999999999999999999 9999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCcc-cee--eccccchhhhcccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRSI-LRT--HSVQWSQTKMDAAY 138 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~ 138 (150)
+||.++.++ ...| |++||-.|+.| +++|.+.- ++. .||..+..=|.|.-
T Consensus 156 ~~d~~~~~v~qgG~RRGA~m~~-l~~~HpDI~~F--I~~K~~~~~~~~~n~sV~i~D~Fm~av~ 216 (752)
T PRK08665 156 VFDAATEAIKQGGTRRGANMGI-LRVDHPDIMEF--ITCKEDNGELTNFNISVAITEAFMEAVE 216 (752)
T ss_pred HHHHHHHHHHhCCcccceeEEE-EcCCCccHHHH--HHhcccCCccccceeeeccCHHHHHHHH
Confidence 999999998 4556 99999999999 99997632 211 24444444454443
No 18
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.
Probab=99.93 E-value=5.4e-27 Score=214.16 Aligned_cols=115 Identities=25% Similarity=0.405 Sum_probs=106.1
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|++||||+++.+||+++|+++++++++++|+|||||+|||+|||+|++|++++|.|+ |+|||||
T Consensus 67 ~l~naGt~~~~lssCfv~~~~dds~~~I~~~~~~~a~l~k~ggGvG~~~s~lR~~G~~i~~~~~~ss------G~v~f~~ 140 (617)
T TIGR02506 67 TLFNAGTPRGQLSSCFLLDVTDDTLESIYKAIDDVAQLSKHGGGIGLNLTKLRAIGSPIRGTNNASK------GIIPFLK 140 (617)
T ss_pred hhhcCCCCCCCCcceEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEecccccCCCCCccCCCCCCCC------CceeHHH
Confidence 4899999999999999999877899999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCC---ccceeeccccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQWS 130 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 130 (150)
+||.++.++ ..+| |++||-.|+.| |++|.+ ..-|.|.++-+
T Consensus 141 ~~d~~~~~v~qgg~Rrga~~~~-l~~~HpDi~~F--i~~k~~~~~~~~r~~~~n~s 193 (617)
T TIGR02506 141 LLDSSVEAVNQGGKRPGAAAVY-LEVWHPDIEEF--LDLKKNNGDERRRCDNLFYG 193 (617)
T ss_pred HHHHHHHHHhcCCccccceEEE-EeCCCccHHHH--HHhccccCchhhHHHhcchh
Confidence 999999988 6677 99999999999 999974 45677776643
No 19
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.93 E-value=1.1e-26 Score=212.86 Aligned_cols=113 Identities=25% Similarity=0.350 Sum_probs=103.2
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|++||||+++ +||+++|+++++++|+++|+|||||+|||+|||+|++|++. |+|+ |++||||
T Consensus 77 ~l~naG~~~~~lssCfl~~v-~Dsle~I~~~~~~~a~l~k~gGGvG~~~s~iR~~Gs~I~~~-g~ss------G~v~f~k 148 (601)
T PRK09102 77 VLSNGGTDRGLPISCFLNYV-EDSLEGIVNTWNENVWLAKRGGGIGSYWGNVRSIGEPIRNN-GKSS------GIIPFIK 148 (601)
T ss_pred HHhcCCCCCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhhCCeeeecccccCCCCCccCCC-CCCC------CHHHHHH
Confidence 47999999999999999999 99999999999999999999999999999999999999975 9999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc---cceeeccccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQWS 130 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 130 (150)
+||.++.++ ...| |++||-.|+.| |++|.+. .-|+|.+|.|
T Consensus 149 ~~d~~~~~i~qgg~RrGA~~~~-L~~~HpDI~~F--i~~K~~~g~~~~r~~n~n~s 201 (601)
T PRK09102 149 VMDSLTLAISQGSLRRGSFAVY-LDIEHPEIEEF--LDIRKPTGDPNRKALNLHHG 201 (601)
T ss_pred HHHHHHHHHHcCCccccceEEE-EeCCCcCHHHH--HHHhhccCcccccccCCeeE
Confidence 999999998 5568 99999999999 9999763 4566766644
No 20
>PRK06948 ribonucleotide reductase-like protein; Provisional
Probab=99.93 E-value=1.5e-26 Score=211.53 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=102.9
Q ss_pred ccccCCCCC-CCccceEeeecCcCC------HHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCC
Q psy15805 7 STCPPGLQV-LFYFNCFLLAMQEDS------IEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDP 79 (150)
Q Consensus 7 ~l~NAGT~~-~qLSSCFll~v~dDS------LegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~ 79 (150)
-|+||||++ +||+||||++| +|+ +++|+++++++|+++|+|||||+|||+|||+|++|++++|+|+
T Consensus 73 ~l~NaG~~~~~~lssCfv~~v-~d~~~~~~~~~~i~~~~~~~a~~~k~GGGvG~~~s~lR~~G~~i~~~~g~ss------ 145 (595)
T PRK06948 73 IMANAGAAPDQTMVNCFVHPI-RAPAALTAVHPNLDRALDDARLTLLMGGGIGYDFSAIPPADARPDADHPDSP------ 145 (595)
T ss_pred hhhcCCCCCCCceeeeEEccc-ccccccccchhhHHHHHHHHHHHHhhcCeeeecccccCCCCCcCCCCCCCCC------
Confidence 489999988 68999999999 444 6999999999999999999999999999999999999999999
Q ss_pred CcchHHHHhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCccceeeccccc
Q psy15805 80 SLNPFIRECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRSILRTHSVQWS 130 (150)
Q Consensus 80 G~VpFlk~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (150)
|+|||||+||.++.++ ...| |++||-.|+.| +++|. ...|+|..|-|
T Consensus 146 G~v~fm~~~d~~~~~v~Qgg~RrGA~~~~-L~~~HpDI~~F--i~~K~-~~~~~~~~n~s 201 (595)
T PRK06948 146 GVCAALDRFDRICAALPFRDGRRGAQMAV-LRCDHPDLLAF--VAAKR-GRARWTTFNLS 201 (595)
T ss_pred ChhhHHHHHHHHHHHHHhCCCCccCeEEE-EcCCCCCHHHH--HHhcC-Cccccccceee
Confidence 9999999999999988 5667 99999999999 99997 56788776654
No 21
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu
Probab=99.93 E-value=1.9e-26 Score=205.22 Aligned_cols=106 Identities=23% Similarity=0.332 Sum_probs=98.7
Q ss_pred ccccCCC-CCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHH
Q psy15805 7 STCPPGL-QVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFI 85 (150)
Q Consensus 7 ~l~NAGT-~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFl 85 (150)
-|+|||+ +++|++||||+++.|||+++|+++++++|+++|+|||||+|||+|||+|++|++++|+|+ |++|||
T Consensus 19 ~l~naG~~~~~~lssCfv~~~~dds~~~I~~~~~~~a~l~k~gGGvG~~~s~iRp~G~~i~~~~g~ss------G~v~f~ 92 (464)
T cd02888 19 TLMNAGTGELGQLSACFVLPVEDDSIEGIFDALKEAALIFKRGGGVGYNFSRLRPKGDIVKSTGGVAS------GPVSFM 92 (464)
T ss_pred HhhcCCCCCCCCceeeEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEeeccccCCCCCcccCCCCCCC------ChHhHH
Confidence 4899999 999999999999944499999999999999999999999999999999999999999999 999999
Q ss_pred HHhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCcc
Q psy15805 86 RECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRSI 121 (150)
Q Consensus 86 k~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~~ 121 (150)
|+||.++.++ ...| |++||-.|+.| |++|.+.-
T Consensus 93 ~~~d~~~~~i~qgg~RrgA~~~~-l~~~HpDi~~F--i~~K~~~~ 134 (464)
T cd02888 93 RVFDAATGVIKQGGTRRGANMGV-LDVDHPDIEEF--IDAKMKEE 134 (464)
T ss_pred HHHHHHHHHHHhCCcccceeEEE-EcCCCccHHHH--HHHccccC
Confidence 9999999998 4567 99999999999 99997643
No 22
>cd01679 RNR_I Class I ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (
Probab=99.93 E-value=1.3e-26 Score=206.23 Aligned_cols=113 Identities=29% Similarity=0.433 Sum_probs=103.9
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+|||++++|++||||+++ +||+|+|+++++++++++|+|||||+|+|+|||+|++|++++|.|+ |++||+|
T Consensus 38 ~l~naG~~~~~lssCfl~~v-~Ds~e~i~~~~~~~~~l~~~ggGvG~~~s~iRp~G~~i~~~~g~ss------G~v~~~~ 110 (460)
T cd01679 38 TLFNAGTPRGQLSSCFLLTV-DDSLESIYDTIKECAQLSKIGGGIGLNLSNIRATGSPIRGTNGASN------GVIPFLK 110 (460)
T ss_pred HhhcCCCCCCCcccccCCCC-CCCHHHHHHHHHHHHHHhhcCCEEEEeccccCCCCCcccCCCCCCC------ChhhHHH
Confidence 47999999999999999999 8999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc---cceeecccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQW 129 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 129 (150)
+||.++.++ ...| |++||-+|+.| |++|.+. .-|+|++|-
T Consensus 111 ~~~~~~~~i~qgg~RrgA~~~~-l~~~HpDi~~F--i~~K~~~~~~~~r~~~~n~ 162 (460)
T cd01679 111 LLNDTARYVDQGGQRKGAGAVY-LEIWHPDIEEF--LDLKKNNGDERRRARDLFY 162 (460)
T ss_pred HHHHHHHHHHcCCccccceEEE-EeCCCCcHHHH--HHHhhccCchhhHhhcCce
Confidence 999999988 5667 99999999999 9999763 246666653
No 23
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.93 E-value=2.2e-26 Score=218.21 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=98.3
Q ss_pred ccccCCCCCC-CccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHH
Q psy15805 7 STCPPGLQVL-FYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFI 85 (150)
Q Consensus 7 ~l~NAGT~~~-qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFl 85 (150)
-|+||||+++ ||+||||+++.+||++|||++++++|+|+|+|||||+|||+|||+|++|++++|+|+ |+||||
T Consensus 174 tL~NAGt~~~~~lssCFVl~~~~DSlegI~d~~ke~a~i~k~GGGvG~nfS~LRp~Gs~I~g~~g~SS------G~Vsfm 247 (858)
T PRK08115 174 VLYGAGSKTDVTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSS------GSVSWL 247 (858)
T ss_pred HhhcCCCCCCCceeeEEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEecccccCCCCCccCCCCCcCC------CeecHH
Confidence 4899999988 899999999769999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhhhhhcc---------eeeecccceEEEeecCCCCCcCCC
Q psy15805 86 RECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPR 119 (150)
Q Consensus 86 k~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~ 119 (150)
++||.++.++ ...| |++||-.|+.| +++|.+
T Consensus 248 ~~fd~~~~~V~QGG~RRGA~mv~-L~~wHPDI~eF--I~aK~~ 287 (858)
T PRK08115 248 DDIAKLTHLVEQGGSRRGAQMIM-LADWHPDILEF--IISKMQ 287 (858)
T ss_pred HHHHHHHHHHHhCCCcccceEEE-ecCCcccHHHH--HHhccc
Confidence 9999999888 5677 99999999999 998865
No 24
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain. This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.
Probab=99.93 E-value=2.2e-26 Score=209.99 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=104.4
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|++||||+++ +||+++||++++++|+++|.|||||+|||+|||+|++|+ ++|+|+ |++|||+
T Consensus 76 ~l~NaGt~~~~lsSCFv~~v-~Dsl~~I~~~~~e~a~l~k~GGGiG~~~S~lR~~G~~I~-~~g~ss------G~~~~m~ 147 (571)
T TIGR02510 76 IFANTGLDRGLPISCAGSYV-EDDTADFLEAQAEVAMLAKNGFGTALYLGDIRPRGADIR-DNGEHN------GADAFAP 147 (571)
T ss_pred hhhcCCCCCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCeeeeeccccCCCCCccC-CCCCCC------CcchHHH
Confidence 48999999999999999999 999999999999999999999999999999999999998 678999 9999999
Q ss_pred Hhhhhhhcce-----------eeecccceEEEeecCCCCCcCCCccceeeccccchhhhc
Q psy15805 87 ECGIYVSAPV-----------STYLLNPILFLITPCPPLTLRPRSILRTHSVQWSQTKMD 135 (150)
Q Consensus 87 ~~d~~vsa~~-----------s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (150)
+||..+.++. ..| |++||-.|+.| |++|++.- +.+.++|+-...|
T Consensus 148 ~~d~~~~~i~~~qgg~RrGA~~~~-L~~~HpDI~eF--i~~K~~~~-~~~~~~~~v~~~d 203 (571)
T TIGR02510 148 LFDNFIETFNKVAAAGRRGECAAY-LDFEHGDFEEL--LGIQLEHP-ASAHLFWGFEKED 203 (571)
T ss_pred HHHHHHHHHHHhhCCcCccceEEE-EcCCcccHHHH--HHhcccCC-CCCceeeeeccCH
Confidence 9999998884 567 99999999999 99998743 3466676644433
No 25
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.
Probab=99.92 E-value=6.7e-26 Score=205.76 Aligned_cols=103 Identities=20% Similarity=0.310 Sum_probs=97.6
Q ss_pred cccc-CCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHH
Q psy15805 7 STCP-PGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFI 85 (150)
Q Consensus 7 ~l~N-AGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFl 85 (150)
-|+| +|++++|++||||+++ +||+++|+++++++|+++|.|||||+|||+|||+|++|++++|+|+ |++|||
T Consensus 64 ~l~n~~g~~~~~lssCfv~~v-~Ds~~~I~~~~~~~a~i~k~GGGvG~~~s~iRp~G~~i~g~~g~ss------G~v~~~ 136 (586)
T TIGR02504 64 TLMNAGGTRLGQLSACFVLPV-EDDMESIFEAAKEAALIFKRGGGVGYNFSTLRPKGAKVSGTGGVAS------GPVSFM 136 (586)
T ss_pred hhhcccCCCCCcceeeECCCC-CCCHHHHHHHHHHHHHHHhcCCceeecccccCCCCCccCCCCCCCC------CchhHH
Confidence 3789 8999999999999999 9999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhhhhhccee---------eecccceEEEeecCCCCCcCCC
Q psy15805 86 RECGIYVSAPVS---------TYLLNPILFLITPCPPLTLRPR 119 (150)
Q Consensus 86 k~~d~~vsa~~s---------~~~~~~~~~~~~~~~~~~~~~~ 119 (150)
++||.++.++.+ .| |++||-.|+.| +++|.+
T Consensus 137 ~~~d~~~~~v~qgG~RrgA~~~~-l~~~HpDi~~F--i~~K~~ 176 (586)
T TIGR02504 137 RVFDAAAGVIKQGGTRRGAQMGI-LDVWHPDIEEF--IEAKKK 176 (586)
T ss_pred HHHHHHHHHHHcCCcccCceEEE-EeCCCchHHHH--HHhccc
Confidence 999999999944 46 99999999999 998865
No 26
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated
Probab=99.91 E-value=7e-25 Score=209.78 Aligned_cols=103 Identities=20% Similarity=0.258 Sum_probs=96.7
Q ss_pred ccccCCCC-CCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHH
Q psy15805 7 STCPPGLQ-VLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFI 85 (150)
Q Consensus 7 ~l~NAGT~-~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFl 85 (150)
-|+|+|++ ++|++||||++| +||+++||++++++|+|+|+|||+|+|||+|||+|+.| +++|+|+ |+||||
T Consensus 137 ~l~NaG~~~~~qlssCFvl~v-~Dsle~I~~~~~~~a~i~K~GGGvG~nfS~LRp~G~~i-s~gG~sS------GpvsFm 208 (953)
T PRK06556 137 VWFNVGTESPQQVSACFILSV-DDSMESILNWYKEEGMLFKGGSGTGTNLSRIRSSKELL-SGGGTAS------GPVSFM 208 (953)
T ss_pred HhhcCCCCCCCceeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEeccccCCCCCcC-CCCCCCC------ChhhHH
Confidence 48999997 579999999999 99999999999999999999999999999999999999 7899999 999999
Q ss_pred HHhhhhhhcc----------eeeecccceEEEeecCCCCCcCCCc
Q psy15805 86 RECGIYVSAP----------VSTYLLNPILFLITPCPPLTLRPRS 120 (150)
Q Consensus 86 k~~d~~vsa~----------~s~~~~~~~~~~~~~~~~~~~~~~~ 120 (150)
|+||.++.+| +.+| |++||-.|+.| ++.|.+.
T Consensus 209 ki~D~~~~~ikqGG~tRRGA~mv~-L~vdHPDI~eF--I~~K~~e 250 (953)
T PRK06556 209 RGADASAGTIKSGGATRRAAKMVI-LDVDHPDIEEF--IETKAKE 250 (953)
T ss_pred HHHHHHHHHHHcCCCccCcceEEE-ecCCCccHHHH--HHhcccc
Confidence 9999999999 4456 99999999999 9998764
No 27
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.88 E-value=1.1e-23 Score=204.88 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=89.9
Q ss_pred CCCCccceEeeecCcCCHH---HHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHHHhhh
Q psy15805 14 QVLFYFNCFLLAMQEDSIE---GILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIRECGI 90 (150)
Q Consensus 14 ~~~qLSSCFll~v~dDSLe---gI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk~~d~ 90 (150)
.++|++|||+++| +||++ +||++++++|+|+|+|||+|+|||+|||+|++|++ +|+|+ |+|||||+||.
T Consensus 192 ~~pQlsSCFI~~V-~Dsl~~~~gI~d~~~~~A~l~K~GGGtG~nfS~LR~~Ge~Isg-gG~SS------G~vsFmkifD~ 263 (1220)
T PRK07562 192 EHPQPHACFIQSV-EDDLVNEGGIMDLWVREARLFKYGSGTGSNFSNLRGEGEKLSG-GGKSS------GLMSFLKIGDR 263 (1220)
T ss_pred CCCCcceEEeccc-CCcccccchHHHHHHHHHHHHhcCCeEeecccccCCCCCcCCC-CCcCC------ChhhHHHHHHH
Confidence 6899999999999 99995 99999999999999999999999999999999987 79999 99999999999
Q ss_pred hhhcc----------eeeecccceEEEeecCCCCCcCCC
Q psy15805 91 YVSAP----------VSTYLLNPILFLITPCPPLTLRPR 119 (150)
Q Consensus 91 ~vsa~----------~s~~~~~~~~~~~~~~~~~~~~~~ 119 (150)
++.+| ..+| |++||-.|+.| +++|.+
T Consensus 264 aa~aIkQGG~tRRGA~mv~-LdvdHPDIeeF--I~~K~~ 299 (1220)
T PRK07562 264 AAGAIKSGGTTRRAAKMVI-VDIDHPDIEEF--IDWKVK 299 (1220)
T ss_pred HHHHHHhCCCCccCceEEE-ecCCcccHHHH--HHhccc
Confidence 99998 5667 99999999999 999985
No 28
>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1DQ3_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A 1XJJ_A 1XJG_A 1XJM_B 3O0N_B ....
Probab=99.86 E-value=1.2e-22 Score=182.27 Aligned_cols=112 Identities=24% Similarity=0.353 Sum_probs=92.2
Q ss_pred ccceEe-eecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHHHhhhhhhcc-
Q psy15805 18 YFNCFL-LAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIRECGIYVSAP- 95 (150)
Q Consensus 18 LSSCFl-l~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk~~d~~vsa~- 95 (150)
|||||| ..+ +||+++|+++++++++++|.|||||+|+|+|||+|++|++++|.|+ |+|||||+||.++.++
T Consensus 1 LssCfl~~~~-~Ds~~~I~~~~~~~~~~~~~ggGvG~~~s~lR~~G~~i~~~~~~ss------G~v~~~~~~~~~~~~i~ 73 (538)
T PF02867_consen 1 LSSCFLMISV-EDSLESIFDTLKEAARLSKYGGGVGIDFSNLRPKGSPIRGTGGKSS------GPVSFMKLFDSSARAIN 73 (538)
T ss_dssp S-SEEEEEES-SSSHHHHHHHHHHHHHHHCTT-EEEEEGTTS--TTCBETTTSSBCC------HHHHHHHHHHHHHHHSS
T ss_pred CceeeccCCC-CCCHHHHHHHHHHHHHHHHhCCCCCCcccccCCCCCcccccCCCCC------CchhHHHHHHHHhhHhh
Confidence 789999 677 9999999999999999999999999999999999999999999999 9999999999999998
Q ss_pred --------eeeecccceEEEeecCCCCCcCCC---cccee----eccccchhhhccccc
Q psy15805 96 --------VSTYLLNPILFLITPCPPLTLRPR---SILRT----HSVQWSQTKMDAAYK 139 (150)
Q Consensus 96 --------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~ 139 (150)
..+| |++||-.|+.| |++|.+ ...|. +||.-...=|+++-+
T Consensus 74 q~g~RrGa~~~~-l~~~HpDi~~f--i~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~ 129 (538)
T PF02867_consen 74 QGGKRRGAQMVY-LDIWHPDIEEF--IDAKNNNGDEERRLRNLNISVNIPDEFMEAVEN 129 (538)
T ss_dssp STTSSSTEEEEE-EETTBTTHHHH--CTTTSSSSTCCG-STTEEEEEEE-HHHHHHHHT
T ss_pred hccccccceeee-ccCCHHHHHHH--HHHhhcccchhhhhcccceeEEecHHHHHHhhc
Confidence 6788 99999999999 999865 22333 345445555555443
No 29
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.22 E-value=4.5e-12 Score=127.98 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=61.9
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||++| +|||+|||++++++|+++|.|||+|...++|+..++-+-...+.++ +...|.+
T Consensus 259 tl~nagt~~~qlssCfv~~v-~D~l~~I~~~~~~~a~i~k~~gG~~~~~tkil~~~d~~~~~~~~~e------~y~~~~~ 331 (1740)
T PRK08332 259 ALINSGRPLGMLSACFVVPI-EDDMESIMKAAHDVAMIQKAGGGCIDGNAKIIFENEGEEHLTTMAE------MYERYKH 331 (1740)
T ss_pred ceecCCCCCCCcceEEEecC-CCCHHHHHHHHHHhheeeeecCccCCCCceEEEecCCcceeeeHHH------HHHHHHh
Confidence 58999999999999999999 9999999999999999999999999999999997664333344444 4455555
No 30
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=99.05 E-value=4.7e-11 Score=110.48 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=69.1
Q ss_pred cccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHH
Q psy15805 6 DSTCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFI 85 (150)
Q Consensus 6 ~~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFl 85 (150)
-.|+|+|++++||+||||+++.||+ + |+||||
T Consensus 168 Ptl~n~~~~~~qlssCfv~~~~dd~------------------------------------------s------G~i~~~ 199 (651)
T COG0209 168 PTLLNGGTPRGQLSSCFVLPVEDDS------------------------------------------S------GVVPFM 199 (651)
T ss_pred cceecCCCCCCceeeeEEecccCCC------------------------------------------C------CchhHH
Confidence 3589999999999999999975777 6 999999
Q ss_pred HHhhhhhhcc---------eeeecccceEEEeecCCCCCcCCC---ccceeeccccchhhhc
Q psy15805 86 RECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQWSQTKMD 135 (150)
Q Consensus 86 k~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 135 (150)
|++|.++.++ ..+| |+.||..|+.| |++|.+ -.+|+|...+.-.-.|
T Consensus 200 k~~d~~~~~i~QgG~R~GA~~v~-L~~~HpDi~~f--l~~k~~~gde~~r~~~~~~~~~i~d 258 (651)
T COG0209 200 KLLDDAFDAINQGGVRRGAQAVY-LDIWHPDIEEF--LDAKRNNGDEILRAFDISVGVWIPD 258 (651)
T ss_pred HHHHHHHHHHhhcCcCCCCeEEe-ecCCCccHHHH--HHHHhhccccceeeeccccceeecH
Confidence 9999999999 6778 99999999999 999998 4799998887654333
No 31
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.00 E-value=7.8e-11 Score=119.20 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=74.6
Q ss_pred HHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHHHhhhhhhcc---------eeeecccceEEEe
Q psy15805 38 FTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIRECGIYVSAP---------VSTYLLNPILFLI 108 (150)
Q Consensus 38 l~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk~~d~~vsa~---------~s~~~~~~~~~~~ 108 (150)
..|+++++|. |+|+|||+|||+|++|++++|.|+ |+||||++||.++..+ ...| |++||-.|
T Consensus 745 ~~E~~~~~k~--G~G~~fS~LRp~Gs~I~~t~g~as------Gpvsfm~lfd~~~~~v~QGG~RRGA~m~y-L~~~HPDI 815 (1740)
T PRK08332 745 AGENGMIFVH--NTGLNFSKLRPEGDIVGTTTGAAS------GPVSFMHLIDAVSDVIKQGGVRRGANMGI-LEIWHPDI 815 (1740)
T ss_pred HhhheEEeec--cEEecccccCCCCCcccCCCCCCC------ChHHHHHHHHHHHHHHHhcCCCcCCeEEE-EcCCCccH
Confidence 4588999998 999999999999999999999999 9999999999999888 5677 99999999
Q ss_pred ecCCCCCcCCC----ccceeeccc--cchhhhccc
Q psy15805 109 TPCPPLTLRPR----SILRTHSVQ--WSQTKMDAA 137 (150)
Q Consensus 109 ~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~ 137 (150)
+.| ++.|.+ ..||+++.. +...=|.+.
T Consensus 816 ~eF--I~aK~~~~g~~~l~~fNlsv~v~D~FMeaV 848 (1740)
T PRK08332 816 EKF--IHAKEKNIGTNVLSNFNISVGIWEDFWEAL 848 (1740)
T ss_pred HHH--HHhhhccCCcchhccccccccchHHHHHHH
Confidence 999 999964 257766543 333444443
No 32
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man
Probab=98.47 E-value=2.8e-07 Score=86.51 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=69.2
Q ss_pred eeecCcCCHHHHHHHHHHHHHHhh-hcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHHHhhhhh---------
Q psy15805 23 LLAMQEDSIEGILATFTQCGLISK-AAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIRECGIYV--------- 92 (150)
Q Consensus 23 ll~v~dDSLegI~dtl~e~A~IsK-~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk~~d~~v--------- 92 (150)
.+.| +||.||-.+++...-.+.. ..-++++|||+|||+|++|++++|.|| ||+||+++|+...
T Consensus 165 ~~~v-~Ds~egw~~~~~~l~~~~~~~~~~~~~d~S~iRP~G~~lkg~gG~as------Gp~~~~~~~~~~~~iL~~~~G~ 237 (658)
T cd01676 165 IIKV-PDSREGWVKSVQLLLDLYFNPAQTLIFDYSDIRPAGERLKGFGGIAS------GPEPLKKLHKAIAAILNDRSGK 237 (658)
T ss_pred EEEc-CCCHHHHHHHHHHHHHhcccCCCceEEecccCCCCCCcccCCCCCCC------CcHHHHHHHHHHHHHHhhhccc
Confidence 3457 9999998888877666543 344899999999999999999999999 9999999999852
Q ss_pred ---------------hcce------eeecccceEEEeecCCCCCcCCC
Q psy15805 93 ---------------SAPV------STYLLNPILFLITPCPPLTLRPR 119 (150)
Q Consensus 93 ---------------sa~~------s~~~~~~~~~~~~~~~~~~~~~~ 119 (150)
.+++ +.+ +..+|-.|+.| ++.|..
T Consensus 238 ~L~~id~~di~n~~~~~v~~Gg~RR~A~-M~~~HpDi~eF--i~aK~~ 282 (658)
T cd01676 238 PLTSVDIVDLMNLIGVCVVSGNVRRSAE-IAFGQPEDEDF--ADLKQY 282 (658)
T ss_pred ccchhHHHHHHhhhhcEEeecCccccee-cCCCCccHHHH--HHhccc
Confidence 2332 244 56788899998 777765
No 33
>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase. Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical.
Probab=98.42 E-value=1.4e-07 Score=79.70 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=69.6
Q ss_pred CCCCCCCccceEeeecCcCCH---------------HHHHHHHHHHHHHhhhc--Ceeeeec--CCccCCCCcccc-CCC
Q psy15805 11 PGLQVLFYFNCFLLAMQEDSI---------------EGILATFTQCGLISKAA--GGIGLNV--HNIRATGNDLKK-ISK 70 (150)
Q Consensus 11 AGT~~~qLSSCFll~v~dDSL---------------egI~dtl~e~A~IsK~G--GGVGid~--S~IRpkGS~Irg-t~G 70 (150)
..++..+++|||+..+ +|++ |+|...+...+.+++.+ ||+|++. +.|||.++++++ .++
T Consensus 15 ~~~~~~~~~~C~~~~~-~d~l~~g~~~~~~p~~~~~eai~~~~~~~~~~~~~~~~ggv~~~~~d~~l~p~~~~~~~~~~~ 93 (401)
T cd00576 15 VGRPDLPFTGCVLVDY-GDSLDPGIKGVNETAKSINEAIQKTYQIIALAASNQNGGGVSFARASSILSPYGSRDYAKGSG 93 (401)
T ss_pred cCCcccccCceEEEEh-HHHHHHhhhhcCCCccCHHHHHHHHHHHHHHHHHhccCCccCCchhhhhhhHHHHhhhhcCCC
Confidence 3445568999999999 9999 99999999999877777 9999999 999999998876 567
Q ss_pred CCCCCCCCCCcchHHHHhhhhhhcce
Q psy15805 71 FEEPSKKDPSLNPFIRECGIYVSAPV 96 (150)
Q Consensus 71 ~Ss~~g~~~G~VpFlk~~d~~vsa~~ 96 (150)
.+. |++++|+.|+..+.++.
T Consensus 94 ~~~------~~~~~~~~~~~~~~~~~ 113 (401)
T cd00576 94 TET------DAVEAADAFNLALKEVG 113 (401)
T ss_pred ChH------HHHHHHHHHHHHHhhhh
Confidence 778 99999999999999885
No 34
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's.
Probab=98.38 E-value=6.4e-07 Score=84.98 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=52.5
Q ss_pred ecCcCCHHHHHHHHHHHHHHhhhcC------eeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHHHhhh
Q psy15805 25 AMQEDSIEGILATFTQCGLISKAAG------GIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIRECGI 90 (150)
Q Consensus 25 ~v~dDSLegI~dtl~e~A~IsK~GG------GVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk~~d~ 90 (150)
.+ +||-||=.++++..-.++..+. .||+|||+|||+|+.+++++|.|| ||+||+++|+.
T Consensus 179 ~v-~DSreGWv~s~~~ll~~~~~~~~~~~~~~v~~dfS~iRP~Ga~lkg~GG~AS------GPvsl~~l~~~ 243 (713)
T TIGR02505 179 DL-PDTREGWVLANALLIDLHFAQTNADRKQKLVLDLSDIRPAGAELKGFGGTAS------GPVPLAKMLTD 243 (713)
T ss_pred Ec-CCcHHHHHHHHHHHHHHhcCccccccCCceeeeccccCCCCCcccCCCCCCC------CcHHHHHHHHH
Confidence 36 9999999999998888775543 579999999999999999999999 99999999964
No 35
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=60.56 E-value=13 Score=28.10 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=31.4
Q ss_pred ccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeee
Q psy15805 18 YFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGL 53 (150)
Q Consensus 18 LSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGi 53 (150)
+..+||++|+.++.+.-.+..++++.+.|-.|.+.+
T Consensus 2 YvdGfv~~VP~~nk~aY~~~A~~a~~vf~e~GAl~~ 37 (103)
T PF07237_consen 2 YVDGFVLPVPTANKDAYRAMAEKAAEVFKEHGALRV 37 (103)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTT-SEE
T ss_pred ceeEEEEECcHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 467999999999999999999999999999998765
No 36
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man
Probab=25.99 E-value=56 Score=31.61 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.4
Q ss_pred CccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCC
Q psy15805 17 FYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHN 57 (150)
Q Consensus 17 qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~ 57 (150)
.+.||-...+ +| +.+....+..+.-.|+|||++...
T Consensus 89 ~~~NC~f~~~-~~----~~~~f~~~~~llm~G~GvG~~~~~ 124 (658)
T cd01676 89 SLNNCAFVST-ED----VVYPFVFLMDLLMQGCGVGFDTAG 124 (658)
T ss_pred ccccceeecc-cc----chhhHHHHHHHHhcCCcCCeEecc
Confidence 4899999987 55 556667777777789999999864
No 37
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=21.96 E-value=9.8 Score=24.43 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=17.9
Q ss_pred CCcCCCccceeeccccchhhhcc
Q psy15805 114 LTLRPRSILRTHSVQWSQTKMDA 136 (150)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~ 136 (150)
=|||..|..-.|-|+|.....+.
T Consensus 20 CTir~~P~~~~HcI~wAk~~f~~ 42 (45)
T PF10585_consen 20 CTIRNFPRTPEHCIEWAKDLFEE 42 (45)
T ss_dssp HHHHTS-SSHHHHHHHHHHHHHH
T ss_pred chhhcCCCCchHHHHHHHHHHHH
Confidence 48999999999999999855443
Done!