Query psy15805
Match_columns 150
No_of_seqs 126 out of 685
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 21:49:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hnc_A Ribonucleoside-diphosph 100.0 8.8E-30 3E-34 238.1 6.5 114 7-129 204-330 (792)
2 3k8t_A Ribonucleoside-diphosph 100.0 1.4E-29 4.9E-34 239.1 6.3 113 7-128 204-329 (888)
3 2wgh_A Ribonucleoside-diphosph 100.0 4.2E-29 1.4E-33 229.4 6.2 113 7-128 131-256 (676)
4 3o0q_A Ribonucleoside-diphosph 99.9 5.4E-29 1.9E-33 228.2 4.9 95 15-119 128-231 (644)
5 1peq_A Ribonucleoside-diphosph 99.9 2.7E-28 9.1E-33 225.2 5.7 114 7-130 163-289 (714)
6 2xap_A Ribonucleoside-diphosph 99.9 1.7E-27 5.7E-32 221.1 6.2 112 7-128 211-334 (761)
7 1l1l_A Ribonucleoside triphosp 99.7 9.1E-19 3.1E-23 162.4 6.1 78 29-120 222-340 (739)
8 1dq3_A Endonuclease; PI-PFUI, 74.6 0.16 5.5E-06 43.7 -3.7 38 51-94 1-38 (454)
9 2okq_A Hypothetical protein YB 50.3 15 0.00052 28.3 3.7 37 17-53 26-62 (141)
10 1vfj_A Nitrogen regulatory pro 16.9 68 0.0023 22.3 2.0 33 22-54 61-93 (116)
No 1
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*
Probab=99.96 E-value=8.8e-30 Score=238.08 Aligned_cols=114 Identities=35% Similarity=0.515 Sum_probs=101.9
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++++||++|||++++++|+++|+|||||+|||+|||+|++|+|++|+|+ |+|||||
T Consensus 204 tl~NaGt~~~qlsSCFl~~v~~Dsl~~I~~~~~~~a~isk~GGGiG~~~s~iR~~Gs~I~g~~g~ss------G~vpfmk 277 (792)
T 3hnc_A 204 TLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSN------GLVPMLR 277 (792)
T ss_dssp HHHHTTSSSCCCCCEEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEEECTTSCCTTCEETTTTEECC------CSHHHHH
T ss_pred hhhcCCCCCCCCCceeccCCCCccHHHHHHHHHHHHHHHHhCCCceEeeeccCCCCCcccCCCCCCC------CchhHHH
Confidence 4899999999999999999988999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc----------eeeecccceEEEeecCCCCCcCCC---ccceeecccc
Q psy15805 87 ECGIYVSAP----------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQW 129 (150)
Q Consensus 87 ~~d~~vsa~----------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 129 (150)
+||+++.++ ..+| |++||-.|+.| |++|.+ .-.|+|.++-
T Consensus 278 ~~d~~~~~v~QgG~~R~GA~~vy-L~~wHpDI~eF--l~~K~~~g~e~~r~~~l~~ 330 (792)
T 3hnc_A 278 VYNNTARYVDQGGNKRPGAFAIY-LEPWHLDIFEF--LDLKKNTGKEEQRARDLFF 330 (792)
T ss_dssp HHHHHHHHCCCC------CEEEE-ECTTBTTHHHH--TTSCC---------CCEEE
T ss_pred HHHHHHHHHHhCCCccccceEEE-ecCCCccHHHH--HHHhhccCcHhHhHhhCch
Confidence 999999998 5578 99999999999 999986 3356665443
No 2
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Probab=99.95 E-value=1.4e-29 Score=239.09 Aligned_cols=113 Identities=36% Similarity=0.543 Sum_probs=104.8
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++|||||||+++.+||++|||++++++|+|+|+|||||+|||+|||+|++|+|++|+|+ |+|||||
T Consensus 204 tL~NAGt~~~qlsSCFll~~~~DSl~gI~~~~~~~a~isK~GGGiG~~~s~iR~~Gs~I~g~~g~ss------G~Vpfmk 277 (888)
T 3k8t_A 204 TLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSN------GLIPMIR 277 (888)
T ss_dssp HHHHTTSSSCCCCCEEEEECCCSSHHHHHHHHHHHHHHHTTCCEEEEECTTSCCTTCEETTTTEECC------CHHHHHH
T ss_pred hhhcCCCCCCCCCceeccCCCCccHHHHHHHHHHHHHHHHhCCCccccccccCCCCCcccCCCCCCC------CcccHHH
Confidence 4799999999999999999779999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc----------eeeecccceEEEeecCCCCCcCCC---ccceeeccc
Q psy15805 87 ECGIYVSAP----------VSTYLLNPILFLITPCPPLTLRPR---SILRTHSVQ 128 (150)
Q Consensus 87 ~~d~~vsa~----------~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 128 (150)
+||.++.++ ..+| |++||-.|+.| |++|.+ .-.|+|.++
T Consensus 278 v~d~~~~~v~QgG~~RrGA~~vy-L~vwHpDI~eF--L~~K~~~g~e~~R~~~l~ 329 (888)
T 3k8t_A 278 VFNNTARYVDQGGNKRPGAFALY-LEPWHADIFDF--IDIRKNHGKEEIRARDLF 329 (888)
T ss_dssp HHHHHHHHCCTTC---CCCEEEE-ECTTBTTHHHH--TTTTCSSSCSTTCCTTEE
T ss_pred HHHHHHHHHHhCCCccccceeEE-ecCCCchHHHH--HHHhhhcCchhhhhhhCe
Confidence 999999998 5668 99999999999 999986 345766554
No 3
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}
Probab=99.95 E-value=4.2e-29 Score=229.39 Aligned_cols=113 Identities=35% Similarity=0.513 Sum_probs=105.0
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++||+||||+++++||++|||++++++|+++|.|||||+|||+|||+|++|+|++|+|+ |+|||||
T Consensus 131 tl~naGt~~~qlssCfl~~v~~Dsl~gI~~~~~~~a~i~k~gGGvG~~~s~iR~~Gs~I~g~~g~ss------G~vpfmk 204 (676)
T 2wgh_A 131 TLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSN------GLVPMLR 204 (676)
T ss_dssp HHHHTTSSSCCCCCEEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEEECTTSCCTTCEEGGGTEECC------CHHHHHH
T ss_pred HHhcCCCCCCCCCCeEeecCCcccHHHHHHHHHHHHHHHhcCCCceecceeecCCCCcccCCCCCCC------CchhHHH
Confidence 4899999999999999999989999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc----------eeeecccceEEEeecCCCCCcCCCc---cceeeccc
Q psy15805 87 ECGIYVSAP----------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQ 128 (150)
Q Consensus 87 ~~d~~vsa~----------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 128 (150)
+||+++.++ ..+| |++||-.|+.| |++|.+. -.|+|.++
T Consensus 205 ~~d~~~~~v~QgG~~RrGA~~~~-l~~~HpDI~eF--l~~K~~~g~e~~r~~~l~ 256 (676)
T 2wgh_A 205 VYNNTARYVDQGGNKRPGAFAIY-LEPWHLDIFEF--LDLKKNTGKEEQRARDLF 256 (676)
T ss_dssp HHHHHHHHSCSTTSSCCCCEEEE-ECTTBTTHHHH--TTTTCSSSCGGGCCTTSE
T ss_pred HHHHHHHHHHhcCCccCCceeEE-eCCCChhHHHH--HHhhccccchhhhhhhcc
Confidence 999999988 5678 99999999999 9999873 35666554
No 4
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*
Probab=99.95 E-value=5.4e-29 Score=228.21 Aligned_cols=95 Identities=22% Similarity=0.319 Sum_probs=91.2
Q ss_pred CCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHHHhhhhhhc
Q psy15805 15 VLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIRECGIYVSA 94 (150)
Q Consensus 15 ~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk~~d~~vsa 94 (150)
++|||||||+++ +||+++||++++++|+++|+|||||+|||+|||+|++|++++|+|+ |+|||||+||.++.+
T Consensus 128 ~~qlssCFl~~v-~Dsl~~I~~~~~~~a~i~k~GGGiG~~~s~iR~~Gs~I~g~~g~ss------G~vpfmk~~d~~~~~ 200 (644)
T 3o0q_A 128 LHMLSACFVVPV-GDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKAS------GPVSFMHVFNSAISV 200 (644)
T ss_dssp TCCCCCEEECCC-CSSHHHHHHHHHHHHHHHHTTCEEEEECTTSCCTTCEETTTTEECC------CHHHHHHHHHHHHTT
T ss_pred CCCccceEecCC-CCCHHHHHHHHHHHHHHHhhCCCceeeccccCCCCCcccccCCccC------CcccHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999 999999999999999
Q ss_pred c---------eeeecccceEEEeecCCCCCcCCC
Q psy15805 95 P---------VSTYLLNPILFLITPCPPLTLRPR 119 (150)
Q Consensus 95 ~---------~s~~~~~~~~~~~~~~~~~~~~~~ 119 (150)
+ ..+| |++||-.|+.| |++|.+
T Consensus 201 v~QgG~RrGA~~~y-L~~~HpDI~eF--l~~K~~ 231 (644)
T 3o0q_A 201 VKQGSRRRGALMGI-LNINHPDIEEF--IDAKKE 231 (644)
T ss_dssp CEETTTEECCEEEE-EETTSTTHHHH--HTCC--
T ss_pred HHcCCccccceEEE-ecCCCcCHHHH--HHHhcc
Confidence 8 6788 99999999999 999986
No 5
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Probab=99.94 E-value=2.7e-28 Score=225.21 Aligned_cols=114 Identities=23% Similarity=0.300 Sum_probs=102.5
Q ss_pred ccccCCCC-CCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHH
Q psy15805 7 STCPPGLQ-VLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFI 85 (150)
Q Consensus 7 ~l~NAGT~-~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFl 85 (150)
.|+||||+ ++|||||||++| +||++||+++++++++++|.|||||+|||+|||+|++|+|++|.|+ |+||||
T Consensus 163 tl~NaGt~~~~qlssCFl~~v-~Dsle~I~~~~~~~a~l~k~gGGvG~~~s~iR~~Gs~I~g~~g~ss------G~vpfm 235 (714)
T 1peq_A 163 TFLNCGKQQRGELVSCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSS------GVIPVM 235 (714)
T ss_dssp HHHHTTBSSCCCSCCCEEECC-CSSHHHHHHHHHHHHHHHTTTCEEEEECTTSCCTTCCBTTBSSCCC------CSHHHH
T ss_pred hhhcCCCCCCCCccceecCCC-CCCHHHHHHHHHHHHHHHhcCCCceEeeccccCCCCcccCCCCCCC------ChhHHH
Confidence 48999997 589999999999 9999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc---cceeeccccc
Q psy15805 86 RECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQWS 130 (150)
Q Consensus 86 k~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 130 (150)
|+||.++.++ ..+| |++||-.|+.| |++|.+. -.|+|.++-+
T Consensus 236 k~~d~~~~~v~QgG~RrGA~~vy-L~~~HpDI~eF--l~~K~~~gde~~r~~~l~~~ 289 (714)
T 1peq_A 236 KMLEDAFSYANQLGARQGAGAVY-LHAHHPDILRF--LDTKRENADEKIRIKTLSLG 289 (714)
T ss_dssp HHHHHHHHHC------CCEEEEE-EETTSTTHHHH--HGGGC--------CCSCEEE
T ss_pred HHHHHHHHHHhccCccCCceeEE-ecCCCchHHHH--HHHcccccchhhhhhhhhhh
Confidence 9999999998 6788 99999999999 9999883 4677766533
No 6
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Probab=99.94 E-value=1.7e-27 Score=221.06 Aligned_cols=112 Identities=20% Similarity=0.245 Sum_probs=98.0
Q ss_pred ccccCCCCCCCccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHH
Q psy15805 7 STCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIR 86 (150)
Q Consensus 7 ~l~NAGT~~~qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk 86 (150)
-|+||||+++||+||||++| +||++||+++++++++++|.|||||+|||+|||+|++|+|++|.|+ |+|||||
T Consensus 211 tl~naGt~~~qlssCFl~~v-~Dsle~I~~~~~~~~~~~s~ggGvG~~~s~iR~~Gs~I~g~~g~ss------G~vpfmk 283 (761)
T 2xap_A 211 IMSGVRTPTRQFSSCVLIEC-GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT------GCIPFYK 283 (761)
T ss_dssp HHHHTTSSCCCCCCEEEEEC-CSSHHHHHHHHHHHHHHHTTTCEEEEECTTSCCTTCC------CCS------CHHHHHH
T ss_pred hhhcCCCCCCCcceEEEecC-CCCHHHHHHHHHHHHHHHhhCCccceeeeecCCCCCcCCCCCCcCC------CcHHHHH
Confidence 48999999999999999999 9999999999999999888899999999999999999999999999 9999999
Q ss_pred Hhhhhhhcc---------eeeecccceEEEeecCCCCCcCCCc---cceeeccc
Q psy15805 87 ECGIYVSAP---------VSTYLLNPILFLITPCPPLTLRPRS---ILRTHSVQ 128 (150)
Q Consensus 87 ~~d~~vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 128 (150)
+||.++.++ ..+| |++||-.|+.| |++|.+. --|+|.++
T Consensus 284 ~~d~~~~~v~QgG~RrGA~~vy-L~~~HpDI~eF--l~~K~~~g~e~~r~~~l~ 334 (761)
T 2xap_A 284 HFQTAVKSCSQGGVRGGAATLF-YPMWHLEVESL--LVLKNNRGVEGNRVRHMD 334 (761)
T ss_dssp HHHHHHTTTSTTSSSSCEEEEE-EETTBTTHHHH--HTTTCSSSCGGGCCTTSE
T ss_pred HHHHHHHHHHccCCcCCceeEE-ecCCCchHHHH--HHHhcccCcchhhhhhcc
Confidence 999999998 6788 99999999999 9999763 35666554
No 7
>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4
Probab=99.74 E-value=9.1e-19 Score=162.36 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHHhhh--------cCeeeeecCCccCCCCccccCCCCCCCCCCCCCcchHHHHhhhh---------
Q psy15805 29 DSIEGILATFTQCGLISKA--------AGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIRECGIY--------- 91 (150)
Q Consensus 29 DSLegI~dtl~e~A~IsK~--------GGGVGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk~~d~~--------- 91 (150)
||+|||++++. +++++. +||||+|||+|||+|++|+|++|+|+ |+|||||+||++
T Consensus 222 DS~eGi~~~~~--ali~~~~~~~~~~~~gGiG~~~S~IRp~Gs~Ikg~~G~ss------G~vpf~k~~~~~~~i~~~~~g 293 (739)
T 1l1l_A 222 DTREGWVLANA--LLIDLHFAQTNPDRKQKLILDLSDIRPYGAEIHGFGGTAS------GPMPLISMLLDVNEVLNNKAG 293 (739)
T ss_dssp SSHHHHHHHHH--HHHHTTSGGGCTTCCCEEEEECTTSCCTTCBCTTSSSBCC------CSHHHHHHHHHHHHHHHTTTT
T ss_pred CchhHHHHHHH--HHHHHhhccccccCCCceEEeccccCCCCCccCCCCCcCC------CcHHHHHHHHHHHHHhhhhcc
Confidence 33344444444 556665 69999999999999999999999999 999999999887
Q ss_pred ---------------hhcc---------eeeecccceEEEeecCCCCCcCCCc
Q psy15805 92 ---------------VSAP---------VSTYLLNPILFLITPCPPLTLRPRS 120 (150)
Q Consensus 92 ---------------vsa~---------~s~~~~~~~~~~~~~~~~~~~~~~~ 120 (150)
+.++ ...| |+ ..|+.| |++|.+.
T Consensus 294 ~~l~~~d~~di~~~i~~~V~QGG~RrGA~m~~-l~---pDi~eF--i~~K~~~ 340 (739)
T 1l1l_A 294 GRLTAVDAADICNLIGKAVVAGNVRRSAELAL-GS---NDDQDF--ISMKQDQ 340 (739)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTC----CEEEE-EE---TTCHHH--HHGGGCH
T ss_pred cccccchhhhhhHHHHHHHhcCCccccceEEE-EC---ccHHHH--HHhCccc
Confidence 3344 5667 44 588889 9999873
No 8
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=74.58 E-value=0.16 Score=43.70 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=32.8
Q ss_pred eeeecCCccCCCCccccCCCCCCCCCCCCCcchHHHHhhhhhhc
Q psy15805 51 IGLNVHNIRATGNDLKKISKFEEPSKKDPSLNPFIRECGIYVSA 94 (150)
Q Consensus 51 VGid~S~IRpkGS~Irgt~G~Ss~~g~~~G~VpFlk~~d~~vsa 94 (150)
+|+++|.||++|+.+..+.+.++ |++.|++++|..-..
T Consensus 1 C~~~~s~i~~~~~~~~~~~~i~~------g~~~~~~i~~~v~~~ 38 (454)
T 1dq3_A 1 CIDGKAKIIFENEGEEHLTTMEE------MYERYKHLGEFYDEE 38 (454)
T ss_dssp CEETTCEEEEESSSCEEEEEHHH------HHHHHGGGCEEEETT
T ss_pred CCCCCcEEEEeCCCeeccccccc------cchhhhhhhhHHHHH
Confidence 58899999999999888888899 999999988755444
No 9
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=50.33 E-value=15 Score=28.27 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=33.5
Q ss_pred CccceEeeecCcCCHHHHHHHHHHHHHHhhhcCeeee
Q psy15805 17 FYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGL 53 (150)
Q Consensus 17 qLSSCFll~v~dDSLegI~dtl~e~A~IsK~GGGVGi 53 (150)
.+..+||++|+.++.+.--+..+.++.+.|-.|.+.+
T Consensus 26 ~YVDGFv~pVP~ankeaY~~~A~~a~~vfke~GAl~~ 62 (141)
T 2okq_A 26 KYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRI 62 (141)
T ss_dssp CEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred ceEEEEEEECcHHHHHHHHHHHHHHHHHHHHhCCeee
Confidence 6889999999999999988889999999999998764
No 10
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=16.92 E-value=68 Score=22.29 Aligned_cols=33 Identities=6% Similarity=0.107 Sum_probs=26.9
Q ss_pred EeeecCcCCHHHHHHHHHHHHHHhhhcCeeeee
Q psy15805 22 FLLAMQEDSIEGILATFTQCGLISKAAGGIGLN 54 (150)
Q Consensus 22 Fll~v~dDSLegI~dtl~e~A~IsK~GGGVGid 54 (150)
..+-+++|.++.+.+++.+++.+-+.|+|.=+=
T Consensus 61 ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV 93 (116)
T 1vfj_A 61 LEIGVSEPFVKPTVEAILKAARTGEVGDGKIFV 93 (116)
T ss_dssp EEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEE
T ss_pred EEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 444566889999999999999998888887653
Done!