RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15805
(150 letters)
>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large
subunit.
Length = 813
Score = 79.0 bits (195), Expect = 6e-18
Identities = 29/42 (69%), Positives = 36/42 (85%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
CFL+ M++DSIEGI T +C +ISK+AGGIGL+VHNIRATG
Sbjct: 218 CFLICMKDDSIEGIYDTLKECAVISKSAGGIGLSVHNIRATG 259
>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel
domain.
Length = 516
Score = 71.8 bits (177), Expect = 1e-15
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
+CFLL +DS++ I T + L+SK+ GGIG+N+ IRA G
Sbjct: 3 SCFLLPSVDDSLDSIYDTLKEAALLSKSGGGIGINLSKIRAKG 45
>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase. Ribonucleotide
reductase (RNR) catalyzes the reductive synthesis of
deoxyribonucleotides from their corresponding
ribonucleotides. It provides the precursors necessary
for DNA synthesis. RNRs are separated into three
classes based on their metallocofactor usage. Class I
RNRs, found in eukaryotes, bacteria, and many viruses,
use a diiron-tyrosyl radical. Class II RNRs, found in
bacteria, bacteriophage, algae and archaea, use
coenzyme B12 (adenosylcobalamin, AdoCbl). Class III
RNRs, found in anaerobic bacteria, bacteriophages, and
archaea, use an FeS cluster and S-adenosylmethionine to
generate a glycyl radical. Many organisms have more
than one class of RNR present in their genomes. All
three RNRs have a ten-stranded alpha-beta barrel domain
that is structurally similar to the domain of PFL
(pyruvate formate lyase). Class I RNR is
oxygen-dependent and can be subdivided into classes Ia
(eukaryotes, prokaryotes, viruses and phages) and Ib
(which is found in prokaryotes only). It is a
tetrameric enzyme of two alpha and two beta subunits;
this model covers the major part of the alpha or large
subunit, called R1 in class Ia and R1E in class Ib.
Length = 460
Score = 69.5 bits (171), Expect = 9e-15
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
+CFLL + +DS+E I T +C +SK GGIGLN+ NIRATG+ ++
Sbjct: 51 SCFLLTV-DDSLESIYDTIKECAQLSKIGGGIGLNLSNIRATGSPIRGT 98
>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha
subunit. This model represents the alpha (large) chain
of the class I ribonucleotide reductase (RNR). RNR's are
responsible for the conversion of the ribose sugar of
RNA into the deoxyribose sugar of DNA. This is the
rate-limiting step of DNA biosynthesis. Class I RNR's
generate the required radical (on tyrosine) via a
"non-heme" iron cofactor which resides in the beta
(small) subunit. The alpha subunit contains the
catalytic and allosteric regulatory sites. The mechanism
of this enzyme requires molecular oxygen. E. Coli
contains two versions of this enzyme which are regulated
independently (NrdAB and NrdEF, where NrdA and NrdE are
the large chains ). Most organisms contain only one, but
the application of the gene symbols NrdA and NrdE are
somewhat arbitrary. This model identifies RNR's in
diverse clades of bacteria, eukaryotes as well as
numerous DNA viruses and phage [Purines, pyrimidines,
nucleosides, and nucleotides, 2'-Deoxyribonucleotide
metabolism].
Length = 617
Score = 55.5 bits (134), Expect = 9e-10
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
+CFLL + +D++E I +SK GGIGLN+ +RA G
Sbjct: 80 SCFLLDVTDDTLESIYKAIDDVAQLSKHGGGIGLNLTKLRAIG 122
>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 822
Score = 44.5 bits (105), Expect = 6e-06
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 8 TCPPGLQVLFYFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
T P L NCF++ MQ+D IE I T ++K GGIGL+V +RA G+ ++
Sbjct: 219 TPYPQLS-----NCFVMEMQDD-IEHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIR 271
>gnl|CDD|153089 cd02888, RNR_II_dimer, Class II ribonucleotide reductase, dimeric
form. Ribonucleotide reductase (RNR) catalyzes the
reductive synthesis of deoxyribonucleotides from their
corresponding ribonucleotides. It provides the
precursors necessary for DNA synthesis. RNRs are
separated into three classes based on their
metallocofactor usage. Class I RNRs, found in
eukaryotes, bacteria, and bacteriophage, use a
diiron-tyrosyl radical. Class II RNRs, found in
bacteria, bacteriophage, algae and archaea, use
coenzyme B12 (adenosylcobalamin, AdoCbl). Class III
RNRs, found in anaerobic bacteria, bacteriophage, and
archaea, use an FeS cluster and S-adenosylmethionine to
generate a glycyl radical. Many organisms have more
than one class of RNR present in their genomes. All
three RNRs have a ten-stranded alpha-beta barrel domain
that is structurally similar to the domain of PFL
(pyruvate formate lyase). Class II RNRs are found in
bacteria that can live under both aerobic and anaerobic
conditions. Many, but not all members of this class are
found to be homodimers. Adenosylcobalamin interacts
directly with an active site cysteine to form the
reactive cysteine radical.
Length = 464
Score = 43.0 bits (102), Expect = 2e-05
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 18 YFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
CF+L +++DSIEGI + LI K GG+G N +R G
Sbjct: 31 LSACFVLPVEDDSIEGIFDALKEAALIFKRGGGVGYNFSRLRPKG 75
>gnl|CDD|233900 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent. This model represents a
group of adenosylcobalamin(B12)-dependent ribonucleotide
reductases (Class II RNRs) related to the characterized
species from Pyrococcus , Thermoplasma , Corynebacterium
and Deinococcus. RNR's are responsible for the
conversion of the ribose sugar of RNA into the
deoxyribose sugar of DNA. This is the rate-limiting step
of DNA biosynthesis. This model identifies genes in a
wide range of deeply branching bacteria. All are
structurally related to the class I (non-heme iron
dependent) RNRs. In most species this gene is known as
NrdJ, while in mycobacteria it is called NrdZ [Purines,
pyrimidines, nucleosides, and nucleotides,
2'-Deoxyribonucleotide metabolism].
Length = 589
Score = 43.1 bits (102), Expect = 2e-05
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 18 YFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
CF+L + ED +E I + LI K GG+G N +R G
Sbjct: 76 LSACFVLPV-EDDMESIFEAAKEAALIFKRGGGVGYNFSTLRPKG 119
>gnl|CDD|236266 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 789
Score = 37.8 bits (88), Expect = 0.001
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 29 DSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
D+IEGI ++ + L+SK GGIG + +RA G
Sbjct: 223 DNIEGIFDSYKEMALLSKYGGGIGWDWSKVRAMG 256
>gnl|CDD|211905 TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate reductase, class
1b, alpha subunit. Members of this family are NrdE, the
alpha subunit of class 1b ribonucleotide reductase. This
form uses a dimanganese moiety associated with a
tyrosine radical to reduce the cellular requirement for
iron.
Length = 698
Score = 37.4 bits (87), Expect = 0.002
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
CFLL + ED++ I +SK GG+ LN+ N+R G +K I
Sbjct: 164 CFLLRV-EDNMNSIGRAINSALQLSKRGGGVALNLSNLREAGAPIKGI 210
>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 601
Score = 37.2 bits (87), Expect = 0.002
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPS 80
CFL + EDS+EGI+ T+ + ++K GGIG N+R+ G ++ + K
Sbjct: 91 CFLNYV-EDSLEGIVNTWNENVWLAKRGGGIGSYWGNVRSIGEPIRN-------NGKSSG 142
Query: 81 LNPFIR 86
+ PFI+
Sbjct: 143 IIPFIK 148
>gnl|CDD|181700 PRK09209, PRK09209, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 761
Score = 36.6 bits (85), Expect = 0.003
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
CF+ + +DS++GI + T +SK GG+G + +R+ G+D++
Sbjct: 237 CFIDTV-DDSLQGIYDSNTDVARVSKHGGGVGAYLGKVRSRGSDIR 281
>gnl|CDD|235796 PRK06406, PRK06406, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 771
Score = 35.2 bits (81), Expect = 0.008
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGN 63
CF+L + DSIEGI +I K+ GG G + +R +
Sbjct: 252 CFVLPV-PDSIEGIFNALKYTAMIHKSGGGTGFSFSRLRPKDD 293
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
Validated.
Length = 953
Score = 35.3 bits (82), Expect = 0.008
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDL 65
CF+L++ +DS+E IL + + G++ K G G N+ IR++ L
Sbjct: 152 CFILSV-DDSMESILNWYKEEGMLFKGGSGTGTNLSRIRSSKELL 195
>gnl|CDD|180921 PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 720
Score = 35.1 bits (81), Expect = 0.008
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 21 CFLLAMQED--SIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKIS 69
CFL+ + +D SI + + Q +S+ GG+G+N+ N+R G +K
Sbjct: 172 CFLIQVTDDMNSIGRSINSALQ---LSRIGGGVGINLSNLREAGAPIKGYE 219
>gnl|CDD|235952 PRK07187, PRK07187, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 721
Score = 34.7 bits (80), Expect = 0.011
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 18 YFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKIS 69
Y +C+LL + ED++E I + +SK GG+ L + N+R G +K I
Sbjct: 167 YISCYLLRV-EDNMESISRAISTSLQLSKRGGGVALCLTNLREIGAPIKGIE 217
>gnl|CDD|236069 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 699
Score = 34.8 bits (80), Expect = 0.012
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 20 NCFLLAMQE--DSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
+CFLL + + +SI I +T Q +SK GG+ +N+ +RA G +K I
Sbjct: 168 SCFLLEVDDSLNSINFIDSTAKQ---LSKIGGGVAINLSKLRARGEAIKGI 215
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 858
Score = 34.4 bits (79), Expect = 0.014
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 18 YFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIR 59
YFNC+++ +DS EGI Q I GG+G N +R
Sbjct: 186 YFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLR 227
>gnl|CDD|236179 PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 714
Score = 33.9 bits (78), Expect = 0.022
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
CFLL + ED++E I + +SK GG+ L + N+R G +K+I
Sbjct: 178 CFLLRI-EDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKRI 224
>gnl|CDD|237077 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 842
Score = 33.6 bits (77), Expect = 0.029
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 29 DSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
DS++GI + +SK GG+GL +RA G++++
Sbjct: 323 DSLDGIYRSIDNFAQVSKFGGGMGLYFGKVRAVGSNIR 360
>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 1046
Score = 33.0 bits (75), Expect = 0.046
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDP 79
+C+L +Q+D + I + ++SK AGGIG + +RATG +K + K
Sbjct: 456 SCYLSTVQDD-LVHIYKVISDNAMLSKWAGGIGNDWTAVRATGALIKGT------NGKSQ 508
Query: 80 SLNPFIR 86
+ PFI+
Sbjct: 509 GVIPFIK 515
>gnl|CDD|236330 PRK08665, PRK08665, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 752
Score = 32.2 bits (74), Expect = 0.096
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
CF+L + DSIE I LI K+ GG G + +R
Sbjct: 97 CFVLPV-GDSIEEIFDAVKHAALIHKSGGGTGFSFSRLRPKN 137
>gnl|CDD|188230 TIGR02510, NrdE-prime, ribonucleoside-diphosphate reductase, alpha
chain. This model represents a small clade of
ribonucleoside-diphosphate reductase, alpha chains which
are sufficiently divergent from the usual Class I RNR
alpha chains (NrdE or NrdA, TIGR02506) as to warrant
their own model. The genes from Thermus thermophilus,
Dichelobacter and Salinibacter are adjacent to the usual
RNR beta chain [Purines, pyrimidines, nucleosides, and
nucleotides, 2'-Deoxyribonucleotide metabolism].
Length = 548
Score = 30.7 bits (69), Expect = 0.25
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 28 EDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDP 79
DS+ IL + G+++K GG + +IR G D IS + D
Sbjct: 84 GDSVLDILEGQAEVGMMAKNGGGTSSYLGDIRPRGAD---ISTNGTSNGADG 132
>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 764
Score = 29.4 bits (66), Expect = 0.84
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
CF+ + +D++ I + +SK G +G+ IRA ++++
Sbjct: 239 CFISVV-DDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIR 283
>gnl|CDD|188564 TIGR04049, AIR_rel_sll0787, AIR synthase-related protein, sll0787
family. Members of this family include sll0787 from
Synechocystis sp. PCC 6803 and resemble the C-terminal
region of MSMEG_0567 from Mycobacterium smegmatis, where
the N-terminal is a GNAT family N-acetyltransferase. The
conserved cluster is found broadly (Cyanobacteria,
Proteobacteria, Actinobacteria) in about 8 percent of
genomes and appears to be biosynthetic. The product is
unkown [Unknown function, Enzymes of unknown
specificity].
Length = 316
Score = 28.5 bits (64), Expect = 1.2
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 8 TCPPGLQVLFYFNCF-----LLAMQEDSIEGILATFTQCGLISKAAGGI 51
PPG+ + + F LLA++ ++ + F GL A G I
Sbjct: 242 PRPPGVDLDRWLTSFPSFGFLLAVRPADVDAVAQRFAARGLACAAIGEI 290
>gnl|CDD|227393 COG5061, ERO1, Oxidoreductin, endoplasmic reticulum
membrane-associated protein involved in disulfide bond
formation [Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion].
Length = 425
Score = 28.3 bits (63), Expect = 1.7
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 17 FYFNCFLLAMQEDSIEGILATFTQCGLISK-AAGGIGLNVHNIRATGNDLKKISKFEEPS 75
FYFN L+ I+ L++FT C +G + + IRA G K +P
Sbjct: 231 FYFNYALVRSALGKIDVDLSSFTFCPTDKDELSGKLSSLISAIRAQG----KTFNEIQPF 286
Query: 76 KKDPSL 81
+ S+
Sbjct: 287 ALEKSI 292
>gnl|CDD|239241 cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding
domain. Enoate reductase catalyzes the NADH-dependent
reduction of carbon-carbon double bonds of several
molecules, including nonactivated 2-enoates,
alpha,beta-unsaturated aldehydes, cyclic ketones, and
methylketones. ERs are similar to 2,4-dienoyl-CoA
reductase from E. coli and to the old yellow enzyme
from Saccharomyces cerevisiae.
Length = 382
Score = 27.9 bits (62), Expect = 2.2
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 38 FTQCGL---ISKAAGGIGLNVHNIRATGNDLKKISKFEEPSKKDPSLNP--FIRECG 89
F Q G+ + +A GG GL + + N+ I +F PS P+ NP FIR
Sbjct: 33 FNQRGIDYYVERAKGGTGLIITGVTMVDNE---IEQFPMPSLPCPTYNPTAFIRTAK 86
>gnl|CDD|235966 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 965
Score = 27.6 bits (62), Expect = 3.3
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 21 CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
C+L + D ++GI L+SK AGG+G + +RA G+ +K
Sbjct: 374 CYLTTV-PDDLDGIYEAIKDNALLSKFAGGLGNDWTPVRALGSHIK 418
>gnl|CDD|177244 MTH00197, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 323
Score = 27.3 bits (61), Expect = 3.5
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 10 PPGLQVLFYFNCFLLAM-QEDSIEGILATFTQ-------CGLISKAAGGI-GLNVHNIR 59
P ++ L +FNCFLLA Q+ + ILA + C ++S GGI G+N NIR
Sbjct: 103 PSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIR 161
>gnl|CDD|234581 PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.
Length = 244
Score = 27.0 bits (61), Expect = 4.3
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 34 ILATFTQCGLISKA--AGGIGLNVHNIR 59
+ + ++ +A G + L VHN R
Sbjct: 12 MFPGPLEYSILGRALEKGLLELEVHNPR 39
>gnl|CDD|177192 MTH00134, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 324
Score = 26.5 bits (59), Expect = 6.0
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 84 FIRECGIYVSAPVSTYLLNPILFLITPCPPLTL 116
FI+E PV +P LFL TP LTL
Sbjct: 62 FIKE-------PVRPSTSSPFLFLATPMLALTL 87
>gnl|CDD|219138 pfam06690, DUF1188, Protein of unknown function (DUF1188). This
family consists of several hypothetical archaeal
proteins of around 260 residues in length which seem to
be specific to Methanobacterium, Methanococcus and
Methanopyrus species. The function of this family is
unknown.
Length = 252
Score = 26.2 bits (58), Expect = 7.2
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 24 LAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
L E +G+L T+ + GL+SK +G + L V IR +++++
Sbjct: 146 LEFIEGDKKGLLRTY-RTGLVSKTSGTMTLTVDTIRDAAAEIEEL 189
>gnl|CDD|222883 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha;
Provisional.
Length = 753
Score = 26.2 bits (58), Expect = 9.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 29 DSIEGILATFTQCG-LISKAAGGIGLNVHNIRATG 62
DS++ I T ISK AG IG+N IRA G
Sbjct: 230 DSLDSINKTAMAIVKYISKRAG-IGINAGMIRAEG 263
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.426
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,450,525
Number of extensions: 652906
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 42
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)