RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15805
         (150 letters)



>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
           ribonucleotide reductase, nucleotide analogs, all enzyme
           ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
           cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
           1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
           3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
          Length = 888

 Score = 79.2 bits (195), Expect = 3e-18
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 21  CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
           CFL+AM+EDSIEGI  T  +C LISK AGGIGL++HNIR+TG+ + 
Sbjct: 218 CFLVAMKEDSIEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIA 263


>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase,
           ribonucleotide reductase, allosteric enzyme, binding,
           DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB:
           3hnd_A* 3hne_A* 3hnf_A*
          Length = 792

 Score = 77.6 bits (191), Expect = 1e-17
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 21  CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
           CFLL+M++DSIEGI  T  QC LISK+AGGIG+ V  IRATG+ + 
Sbjct: 218 CFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIA 263


>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel,
           adenosylcobalamin dependent, ribonucle reductase; HET:
           TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A*
           1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A*
           1xjj_A*
          Length = 644

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 19  FNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
             CF++ +  DSIE I     +  LI+K  GG+G N   +R  G
Sbjct: 132 SACFVVPV-GDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKG 174


>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA
           replication, allosteric enzyme, nucleotide-binding,
           cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A
           {Homo sapiens}
          Length = 676

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 29/47 (61%), Positives = 37/47 (78%)

Query: 20  NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
           +CFLL+M++DSIEGI  T  QC LISK+AGGIG+ V  IRATG+ + 
Sbjct: 144 SCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIA 190


>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded
           alpha/beta barrel, protein-specificity-effector complex,
           DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP:
           a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
          Length = 714

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 21  CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLKKI 68
           CFLL + ED++E I         +SK  GG+   + N+R  G  +K+I
Sbjct: 178 CFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRI 224


>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha;
           oxidoreductase, DNA replication, allosteric enzyme,
           nucleotide-binding; HET: NIY; 2.10A {Escherichia coli}
           PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A
           2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A*
           2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
          Length = 761

 Score = 69.6 bits (171), Expect = 6e-15
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 21  CFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATG 62
           C L+    DS++ I AT +          GIG+N   IRA G
Sbjct: 225 CVLIEC-GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALG 265


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.12
 Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 45/135 (33%)

Query: 50  GIGLNVHNIRA-TGNDLKKISKFEEPSKKDPSL-NPFIRECGIYVSAPVSTYLLNPILFL 107
           G+ L +   +A +G D  +I  F   S++     N F+      V++P  ++LL P   L
Sbjct: 388 GLNLTLRKAKAPSGLDQSRI-PF---SERKLKFSNRFLP-----VASPFHSHLLVPASDL 438

Query: 108 IT---PCPPLTLRPRSI------------LRTHS---------------VQWSQTKMDAA 137
           I        ++   + I            LR  S               V+W  T    A
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498

Query: 138 YK----GSGREVHIG 148
                 G G    +G
Sbjct: 499 THILDFGPGGASGLG 513


>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle
          structural genomics center for infect disease, tRNA
          methyl transferase; 2.25A {Anaplasma phagocytophilum}
          Length = 253

 Score = 26.0 bits (58), Expect = 5.1
 Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 34 ILATFTQCGLISKA--AGGIGLNVHNIRATGND 64
          +         +  A   G   LNV +IRA  N+
Sbjct: 33 MFPGPLGVSNLGSALKKGLWTLNVFDIRAFANN 65


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,183,924
Number of extensions: 114224
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 8
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)