RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15805
         (150 letters)



>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide
          reductase, C-terminal domain {Escherichia coli [TaxId:
          562]}
          Length = 525

 Score = 66.1 bits (160), Expect = 4e-14
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 18 YFNCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
          + +C L+    DS++ I AT +          GIG+N   IRA G+ ++
Sbjct: 1  FSSCVLIEC-GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIR 48


>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide
          reductase, C-terminal domain {Salmonella typhimurium
          [TaxId: 90371]}
          Length = 525

 Score = 65.4 bits (158), Expect = 8e-14
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 20 NCFLLAMQEDSIEGILATFTQCGLISKAAGGIGLNVHNIRATGNDLK 66
          +CFLL + ED++E I         +SK  GG+   + N+R  G  +K
Sbjct: 3  SCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIK 48


>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA
          {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
          Length = 286

 Score = 26.8 bits (58), Expect = 0.92
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 14/58 (24%)

Query: 27 QEDSIEG----ILATFTQCGLISKAAGG----------IGLNVHNIRATGNDLKKISK 70
          ++D+  G    ++AT +    I+K   G          IG + H       D+KK S+
Sbjct: 1  KKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSE 58


>d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 185

 Score = 25.3 bits (55), Expect = 2.8
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 7/29 (24%)

Query: 116 LRPRS-------ILRTHSVQWSQTKMDAA 137
           L PR        ++R HS  WS+T +  A
Sbjct: 145 LTPRGSFEAWEEVVRGHSTPWSETDLAIA 173


>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA
          {Treponema pallidum [TaxId: 160]}
          Length = 277

 Score = 25.3 bits (54), Expect = 3.7
 Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 10/47 (21%)

Query: 34 ILATFTQCGLISKAAGG----------IGLNVHNIRATGNDLKKISK 70
          ++ T        K               G++ H   AT  D++ +  
Sbjct: 5  VVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGN 51


>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Carboxydothermus hydrogenoformans [TaxId: 129958]}
          Length = 633

 Score = 24.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 46  KAAGGIGLNVHNIRATGNDL 65
           +AAG  G+NV  I  TGN++
Sbjct: 278 RAAGATGINVVGICCTGNEV 297


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 537,874
Number of extensions: 22474
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 7
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)