BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15808
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1
Length = 315
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 6/220 (2%)
Query: 1 MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSL-GICIS 59
M RR G+LLLL QV +G + IPP TL + + ++ PW L CIS
Sbjct: 1 MQRRTRGINTGLLLLLSQVFQIGINNIPPVTLATLAVNVWFFL-----NPWKPLYHSCIS 55
Query: 60 AHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIIST 119
Q+D++RL+LS L HGDD HLY+NMVS++ KG +LER GS F +++ + T
Sbjct: 56 VEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLT 115
Query: 120 SVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYA 179
V Y++L + + + + CA+GFS VLF++K + P +L F VP +A
Sbjct: 116 GVVYLLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFA 175
Query: 180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
W ELV IH P SF GHL+GILVGL YT+ L ++++
Sbjct: 176 CWAELVAIHFCTPGTSFAGHLAGILVGLMYTQGPLKKIMD 215
>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1
Length = 316
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 123/220 (55%), Gaps = 6/220 (2%)
Query: 1 MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSL-GICIS 59
M RR + G+LLLL QV +G + IPP TL + + ++ PW L CIS
Sbjct: 1 MQRRTRGIDTGLLLLLSQVFHIGINNIPPVTLATLAVNVWFFL-----NPWKPLYHSCIS 55
Query: 60 AHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIIST 119
Q D++RL+LS + HGDD HLY+NMVS++ KG +LE+ GS F +++ + T
Sbjct: 56 VEKCYQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLT 115
Query: 120 SVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYA 179
V Y++L + + + CA+GFS VLF++K + P +L F VP +A
Sbjct: 116 GVVYLLLQFASAELMNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFA 175
Query: 180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
W EL IH P SF GHL+GILVGL YT+ L ++++
Sbjct: 176 CWAELAAIHFCTPGTSFAGHLAGILVGLMYTQGPLKKIMD 215
>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1
Length = 315
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 13/265 (4%)
Query: 1 MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISA 60
M RR G++LLL Q+ VG + IPP TL + + + + +N + S C+S
Sbjct: 1 MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLAL-NIWFFLNPQKPLYSS---CLSV 56
Query: 61 HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
Q+D++RL+LS L H DD HLY+NM S++ KG LER GS F +++ + T
Sbjct: 57 EKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTG 116
Query: 121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
V Y++L + + + CA+GFS VLF++K + P +L F VP +A
Sbjct: 117 VVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFAC 176
Query: 181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKLDD 240
W+ELV IHL P SF GHL+GILVGL YT+ L +++E S V +
Sbjct: 177 WVELVAIHLFSPGTSFAGHLAGILVGLMYTQGPLKKIMEACAGGFSSSVGYPGRQYYF-- 234
Query: 241 DCNGDDEDSDTSASFLDFTDNTKND 265
+S S+ + D+ + + D
Sbjct: 235 -------NSSGSSGYQDYYPHGRPD 252
>sp|Q5RBS4|RHBL4_PONAB Rhomboid-related protein 4 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1
Length = 318
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 122/219 (55%), Gaps = 4/219 (1%)
Query: 1 MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISA 60
M RR G++LLL Q+ VG + IPP TL + + + + +N + S C+S
Sbjct: 1 MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLAL-NIWFFLNPQKPLYSS---CLSV 56
Query: 61 HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
QRD++RL+LS L H DD HLY+N S++ KG LER GS F +++ + T
Sbjct: 57 EKCYQQRDWQRLLLSPLHHADDWHLYFNTASVLWKGINLERRLGSRWFAYVITTFSVLTG 116
Query: 121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
V Y++L + + + CA+GFS VLF++K + P +L F VP +A
Sbjct: 117 VVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFAC 176
Query: 181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
W+ELV IHL P SF GH +GILVGL YT+ L +++E
Sbjct: 177 WVELVAIHLFSPGTSFAGHQAGILVGLMYTQGPLKKIME 215
>sp|Q8RXW0|Y3761_ARATH Uncharacterized protein At3g17611 OS=Arabidopsis thaliana
GN=At3g17611 PE=2 SV=1
Length = 334
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 124/240 (51%), Gaps = 24/240 (10%)
Query: 7 RRELGILLLLYQVLSVGFH----LIPPGTLTLILIQTLLYIMNVLAQP--------WDSL 54
RR G +L L + +V + PP T +L+ TL+Y+ P W
Sbjct: 8 RRSGGGMLPLLALSAVAEYYRLPWKPPVTASLLAANTLVYLRPAFIDPVIPHISEVW--- 64
Query: 55 GICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSF 114
+ H I +D KRL LSA H ++ HL YNM+SL+ KG +LE GS +F +V
Sbjct: 65 ---FNPHLIFKHKDLKRLFLSAFYHVNEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFT 121
Query: 115 LI-ISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFS 173
LI +S V ++ ++ L ++D + A+GFS VLF+MK + Q+ D + +
Sbjct: 122 LIGMSQGVTLLLAKSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLNSQAEDYS-SVYGIL 180
Query: 174 VPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTE----TSLGRLVERSGRSVSRVV 229
VP YA W EL+++ + VPNASF GHL GIL G+ Y + S V + R VSR+V
Sbjct: 181 VPTKYAAWAELILVQMFVPNASFLGHLGGILAGIIYLKLKGSYSGSDPVTMAVRGVSRLV 240
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana
GN=At3g58460 PE=1 SV=2
Length = 403
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 109/194 (56%), Gaps = 11/194 (5%)
Query: 24 FHLIPPGTLTLILIQTLLYIMNVLAQPWDSL-GICISAHTILNQRDYKRLVLSALEHGDD 82
++ IP T +++++ ++Y++ +L +D+ +C I+++ R + + HG
Sbjct: 19 WNAIPFLTSSVVVVCGVIYLICLLTG-YDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSL 77
Query: 83 MHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYV-----IYLMNHDV 137
+H+ +NM++L+ G ELER+ GSV+ + L L + +V +++++ + Y +H +
Sbjct: 78 LHVLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGYNPFYQYDHLM 137
Query: 138 TELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN-FSVPAVYAPWIELVIIHLMVPNASF 196
E CAIGFS +LFSM I T S + + F+VPA PWI L++ L++ N S
Sbjct: 138 NE---CAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSL 194
Query: 197 KGHLSGILVGLCYT 210
GHL GIL G Y+
Sbjct: 195 LGHLCGILSGFSYS 208
>sp|Q6CDV6|RBD2_YARLI Rhomboid protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RBD2 PE=3 SV=1
Length = 297
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 62 TILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSV 121
T L + R+ L H HL N+V+L + ER+ G+V+ ++++ L + T++
Sbjct: 50 TALTNFELNRISFYPLVHATWFHLLLNLVALQPIVSQFERVNGTVRTGIVLNILAVVTAI 109
Query: 122 CYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMK---TIRTRQSPDVTHQLLNFSVPAVY 178
+ +LS + D + +G SA +FS IR T N VP
Sbjct: 110 PWCLLSIGFF---PD-----EAVLGSSAWIFSFMGYWAIRESSKQPTTQLAPNLVVPTWL 161
Query: 179 APWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKL 238
P I LV+I +++P++SF GHL G++ G L L+E S + V + N ++ V L
Sbjct: 162 LPIIYLVVIAIVIPSSSFIGHLLGLIAGWMMALGYLDVLIEPSSKVVLWIENKISRVIDL 221
>sp|Q12270|RBD2_YEAST Rhomboid protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=RBD2 PE=1 SV=1
Length = 262
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 14/216 (6%)
Query: 28 PPGTLT--LILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHL 85
PP LT L++ T +Y+++ + + L + A L + RL L L H HL
Sbjct: 13 PPAALTTGLVVFLTAIYLLSFIFALREDLSL---APESLFKLQMSRLSLYPLIHLSLPHL 69
Query: 86 YYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAI 145
+N++++ E G+V V ++ + + Y +L ++Y L A
Sbjct: 70 LFNVLAIWAPLNLFEETHGTVYTGVFLNLSALFAGILYCLLGKLLY-----PEALVAGAS 124
Query: 146 GFSAVLFSMKTIRTRQ-SPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGIL 204
G+ LF+ + + Q P ++S+P +Y P + LV I +++P +SF GH G+
Sbjct: 125 GWCFTLFAYYSFKESQIRPRTRIFRTDYSIPTLYTPLVLLVAIAVVIPGSSFWGHFFGLC 184
Query: 205 VG--LCYTETSLGRLVERSGRSVSRVVNTLTNVFKL 238
VG + Y E+ + + G ++++ +L + +L
Sbjct: 185 VGYAIGYKESWFNK-ITPPGWIITKIEKSLDGLIRL 219
>sp|O74926|RBD2_SCHPO Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rbd2 PE=3 SV=2
Length = 251
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 63 ILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVC 122
+L +R ++ H +H+ +N VSL+ + E+ G++ I+ T +
Sbjct: 50 LLQKRQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLA-------CILVTVIP 102
Query: 123 YVMLSYVIYLMNHD--VTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN-FSVPAVYA 179
Y + +++L+ + + + Y G S F+ + SP N FS+PA
Sbjct: 103 YTLFPGIMHLIVYHFFLRKDYVSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCF 162
Query: 180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERS-GRSVSRVVNT-LTNVFK 237
P I L++ ++VP ASF GH SG ++G C T LG + +S ++V + + + N
Sbjct: 163 PIIYLIMTTILVPKASFIGHASGAVMGYC-TPFMLGSIPLKSWAQNVDPIFQSWVKNYHS 221
Query: 238 LDDDCNGDDEDSDTSASFLDFTDN 261
D + ++ ++F F
Sbjct: 222 FDQLSHAQLPIAEPLSTFSSFPGK 245
>sp|Q6CR06|RBD2_KLULA Rhomboid protein 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RBD2 PE=3 SV=1
Length = 271
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 21/175 (12%)
Query: 39 TLLYIMNVLAQPWDSLGICISAHTILN-----QRDYKRLVLSALEHGDDMHLYYNMVSLI 93
T L+++N L P I+ H +L + D R+ L L H HL++N++S
Sbjct: 26 TALFLVNNLVYP-------INEHLLLKPDSLFKFDLNRISLYPLAHLSFFHLFFNVISTF 78
Query: 94 VKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVL-- 151
E G++ V+++ L + T++ Y ++ +++ E+ + F + L
Sbjct: 79 SMIVMFEESHGTLYTGVILNLLAVFTAIPYCLIGSLLF----PNVEIGGASGWFFSFLGY 134
Query: 152 FSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVG 206
F++K R R S +T FS P +Y P L + L+ P +S GH G+L+G
Sbjct: 135 FAVKESRVRNSVMITS---TFSFPTLYFPVALLFVTALLAPGSSLPGHAIGLLLG 186
>sp|Q6BSA9|RBD2_DEBHA Rhomboid protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RBD2 PE=3
SV=2
Length = 286
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 15/148 (10%)
Query: 66 QRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVM 125
+ D RL L H H N+V L ER G+V V ++ L ++ + + +
Sbjct: 59 EFDLNRLSFYLLFHRGFTHWLLNVVGLFSPLAIFERTNGTVFTGVTLNVLAVTAGLQFCI 118
Query: 126 LSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNF-------SVPAVY 178
+ ++Y N V IG S V+FS + + T + F S+P +Y
Sbjct: 119 VGKLLY-PNTQV-------IGLSGVVFSFMSFMAYKEHHTTPVIYTFKYQGSEVSIPTLY 170
Query: 179 APWIELVIIHLMVPNASFKGHLSGILVG 206
+P+I L++ +++P +SF GHL+GI G
Sbjct: 171 SPFIFLIVCMVLIPGSSFWGHLAGISSG 198
>sp|Q8VEK2|RHBD2_MOUSE Rhomboid domain-containing protein 2 OS=Mus musculus GN=Rhbdd2 PE=2
SV=1
Length = 361
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 46 VLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGS 105
+L P G+ + + + N + Y RLV + + + L + + ER G+
Sbjct: 38 LLQPPLAPSGLSLRSEALRNWQVY-RLVTYIFVYENPVSLLCGAIIIWRFAGNFERTVGT 96
Query: 106 VQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQC-----AIGFSAVLFSMKTIRTR 160
V+ F +I + + S +IYL V+ L + A GF+ V F+M + +
Sbjct: 97 VRHCF---FTLI-----FTVFSAIIYLSFESVSSLSKLGEVEDARGFTPVAFAMLGVTSV 148
Query: 161 QSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCY 209
+S + VP+V PW+ L+ ++P SF ++SG+L+GL Y
Sbjct: 149 RSRMRRALVFGVVVPSVLVPWL-LLCASWLIPQTSFLSNVSGLLIGLSY 196
>sp|Q6NTF9|RHBD2_HUMAN Rhomboid domain-containing protein 2 OS=Homo sapiens GN=RHBDD2 PE=2
SV=2
Length = 364
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 15/169 (8%)
Query: 46 VLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGS 105
+L QP G+ + + + N + Y RLV + + + L + + ER G+
Sbjct: 38 LLQQPLAPSGLTLKSEALRNWQVY-RLVTYIFVYENPISLLCGAIIIWRFAGNFERTVGT 96
Query: 106 VQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQC-----AIGFSAVLFSMKTIRTR 160
V+ +V + + S +I+L V+ L + A GF+ V F+M + T
Sbjct: 97 VRHCFF--------TVIFAIFSAIIFLSFEAVSSLSKLGEVEDARGFTPVAFAMLGVTTV 148
Query: 161 QSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCY 209
+S + VP+V PW+ L+ ++P SF ++ G+ +GL Y
Sbjct: 149 RSRMRRALVFGMVVPSVLVPWL-LLGASWLIPQTSFLSNVCGLSIGLAY 196
>sp|Q755H8|RBD2_ASHGO Rhomboid protein 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RBD2 PE=3 SV=1
Length = 261
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 25/247 (10%)
Query: 18 QVLSVGFHLIPPGTLT--LILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLS 75
+L G H PG LT L + TL+Y++N + + + + A L + RL L
Sbjct: 5 SMLRTGVH--KPGALTAGLSVFLTLVYVLNWVFPINEKILLDPGA---LRKLQLTRLSLY 59
Query: 76 ALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNH 135
L H HL N++SL V E G+V + ++ L I T V Y ++ ++Y
Sbjct: 60 PLAHLSIFHLLLNLMSLFVPLSMFEASHGTVFTGITLNLLAIVTGVVYCLVGMLLY---- 115
Query: 136 DVTELYQCAIGFSAVLFSMKTIRTRQSPDVT--HQLLNFSVPAVYAPWIELVIIHLMVPN 193
+Y G S F++ Q ++L + +P +Y P + LV++ L++P
Sbjct: 116 --PNVYVG--GASGWCFTLCGYFAVQEAGFRPHYELASLKMPTLYIPLVFLVLVTLLMPG 171
Query: 194 ASFKGHLSGILVG--LCYTE------TSLGRLVERSGRSVSRVVNTLTNVFKLDDDCNGD 245
+SF GHL G+ +G + + E T G L+ + + R ++ + +V K + + D
Sbjct: 172 SSFVGHLIGLGLGYLIGFRERWLQMATPPGWLIVKIETWLDRWISMIPSVVKYHRESSVD 231
Query: 246 DEDSDTS 252
T
Sbjct: 232 RTAGYTP 238
>sp|Q4I4A4|RBD2_GIBZE Rhomboid protein 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620
/ FGSC 9075 / NRRL 31084) GN=RBD2 PE=3 SV=1
Length = 267
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 12/140 (8%)
Query: 71 RLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIIS-TSVCYVMLSYV 129
RL L H + +H N+++L E G++ + L + S +V YV++
Sbjct: 63 RLSTFPLIHLNVIHAILNLLALTPLMERFETEHGTLTSLALFFGPLTSIPAVAYVLIERC 122
Query: 130 IYLMNHDVTELYQCAIGFSAVLF---SMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVI 186
I+ NH V +G S +F +M++I+T +S + + + ++P P I ++
Sbjct: 123 IFRANHGV-------LGASMWVFTLLAMESIQTYKS-NPHFVIGSVNIPTWTTPLIMSLV 174
Query: 187 IHLMVPNASFKGHLSGILVG 206
+ ++P S GHL GI +G
Sbjct: 175 VAALIPGTSLLGHLCGIAIG 194
>sp|Q7S4V5|RBD2_NEUCR Rhomboid protein 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rbd-2
PE=3 SV=1
Length = 276
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 150 VLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCY 209
+L M+ IRT ++ + + +++P P + +V+ ++P++SF GHL+G+LVG +
Sbjct: 149 LLLGMEAIRTYKT-NPYFTISTYNIPTWITPLLLVVVTAALLPSSSFLGHLAGLLVGYGF 207
>sp|Q6FSG0|RBD2_CANGA Rhomboid protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RBD2 PE=3 SV=1
Length = 266
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 36/202 (17%)
Query: 68 DYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLS 127
D +L L L H +HL +N ++++ E G++ V+++ + + Y ++S
Sbjct: 54 DLGKLSLYPLMHLSYLHLVFNALAIVGPLNNFESSHGTIHTGVVLNLSAVIAGIIYCVVS 113
Query: 128 YVIYLMNHDVTELYQCAIGFSAVLFSMKTIR-------------TRQSPDVTHQLLNFSV 174
++ L G S +F+ T +R P VT S+
Sbjct: 114 RLL--------SLETGVAGASGWVFTFITYLCVKESQLYPRLELSRFIPGVTQ-----SI 160
Query: 175 PAVYAPWIELVIIHLMVPNASFKGHLSGILVG--LCYTETSLGRLVERSG--RSVSRVVN 230
P + P + L+ ++ +SF GH +G++VG + Y ET L+ + + +
Sbjct: 161 PTQFTPVVFLLFTAIVFFQSSFLGHTAGMIVGYIMGYGETWFNILIPPAWIIEKIEEKAD 220
Query: 231 TLTNV------FKLDDDCNGDD 246
L N+ F + N DD
Sbjct: 221 PLINLIPFGIKFYRSTEINTDD 242
>sp|Q5AH12|RBD2_CANAL Rhomboid protein 2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RBD2 PE=3 SV=1
Length = 284
Score = 34.7 bits (78), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 91/217 (41%), Gaps = 26/217 (11%)
Query: 28 PPGTLTLILIQTLLY--IMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHL 85
PP T +++ T + I +V + ++SL + A LN + L +L H + H
Sbjct: 17 PPALTTGLIVFTFMLCVIKSVTSYTFESLILYPRAPLDLNLNS---ISLYSLFHVNFFHW 73
Query: 86 YYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAI 145
N+ +L E G++ V ++ L + ++ Y ++ + Y N V I
Sbjct: 74 ICNIFTLATPLAVFETRNGTIHTGVTLNLLTVIAALQYCIVGLIFY-PNTGV-------I 125
Query: 146 GFSAVLFSMKTIRTRQSPD---VTHQL-----LNFSVPAVYAPWIELVIIHLMVPNASFK 197
G S + FS+ + + H L + +Y P++ ++ ++ P++S
Sbjct: 126 GLSGIAFSLMSYMAYHESKFRPIMHTFHLSNSLEIKLYTLYVPFVVAIVFMILFPSSSLP 185
Query: 198 GHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTN 234
GHL GI G + + +L S+V+ T+ N
Sbjct: 186 GHLFGITTGYLLSYGYIDKLYPP-----SKVITTIEN 217
>sp|B0SK31|DNAA_LEPBP Chromosomal replication initiator protein DnaA OS=Leptospira
biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 /
Paris) GN=dnaA PE=3 SV=1
Length = 441
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 171 NFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLV-ERSGRSVSRVV 229
NF P + W E ++HLM P+ K H+ +G + E ++ ++V +R S+
Sbjct: 23 NFIAPLRFDKW-ENQVVHLMAPSGGIKRHVETKYIG--FIEDAVYQVVGDRFKVSILTES 79
Query: 230 NTLTNVFKLDDDCNGDDEDSDTSASFLDFTDNTKNDAATIVSASSR 275
T ++V K DD DSD + ++ F++ +D+ I +++
Sbjct: 80 ETSSHVLKEVIQSKFDDSDSDLNPEYI-FSNYITSDSNRIAFTAAK 124
>sp|B0S907|DNAA_LEPBA Chromosomal replication initiator protein DnaA OS=Leptospira
biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dnaA
PE=3 SV=1
Length = 441
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 171 NFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLV-ERSGRSVSRVV 229
NF P + W E ++HLM P+ K H+ +G + E ++ ++V +R S+
Sbjct: 23 NFIAPLRFDKW-ENQVVHLMAPSGGIKRHVETKYIG--FIEDAVYQVVGDRFKVSILTES 79
Query: 230 NTLTNVFKLDDDCNGDDEDSDTSASFLDFTDNTKNDAATIVSASSR 275
T ++V K DD DSD + ++ F++ +D+ I +++
Sbjct: 80 ETSSHVLKEVIQSKFDDSDSDLNPEYI-FSNYITSDSNRIAFTAAK 124
>sp|O14364|YOHB_SCHPO Uncharacterized protein C13E7.11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC13E7.11 PE=4 SV=1
Length = 298
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 72 LVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIY 131
+++SA H HL +NMV+ + +FG+ QFV + ++ S V
Sbjct: 122 MIVSAFSHQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFY--------ISSILFSNVAS 173
Query: 132 LMNHDV---TELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVI 186
L++H + T++ ++G S ++++ + P+ SV ++ P+I + I
Sbjct: 174 LLHHRLRFGTKVTPGSLGASGAIYAIAAATSYFFPNA-------SVSIIFLPFIPIKI 224
>sp|B8F6K4|Y1376_HAEPS UPF0761 membrane protein HAPS_1376 OS=Haemophilus parasuis serovar
5 (strain SH0165) GN=HAPS_1376 PE=3 SV=1
Length = 282
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 124 VMLSYVIYLMNHDVTELYQCA-IGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWI 182
V+LS+V+YL ++ A I S+ +FS++ +H LL F +P V W+
Sbjct: 124 VILSFVVYLAVLIFAPIFAGASIAISSYIFSLEMFSQDGLFSFSHHLLKF-IPFVLT-WL 181
Query: 183 ELVIIHLMVPNASFK---GHLSGILVGLCYTETSLGR 216
+++L+VPN K + + G+ +T LG+
Sbjct: 182 LFALVYLIVPNTQVKFRHAAVGALFAGVFFT---LGK 215
>sp|Q4WLP9|RBD2_ASPFU Rhomboid protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rbd2 PE=3 SV=1
Length = 272
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 79 HGDDMHLYYNMVSLIVKGRELERMFGSVQFVVL-VSFLIISTSVCYVMLSYVIYLMNHDV 137
H H + N+++L E G++ V L + L + Y+++ I N V
Sbjct: 75 HVGFFHAFVNLLALTPLLERFEAEHGTLTAVALFIGPLSTFPAGIYILVEKFILRSNTAV 134
Query: 138 TELYQCAIGFSAVLFSM---KTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNA 194
+G S +F + + I+T +S + L +P +P ++ + VPN
Sbjct: 135 -------VGASVWIFLLLGSEAIKTFKS-NPYFSLGTTKIPTWTSPLFACALVSIFVPNT 186
Query: 195 SFKGHLSGILVG 206
SF GHLS I++G
Sbjct: 187 SFLGHLSAIIIG 198
>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
GN=ydcA PE=3 SV=1
Length = 199
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 42 YIMNVLAQPWDSLGICISAHTILNQRD-------------YKRLVLSALEHGDDMHLYYN 88
+I+ + A W L + AH+++ RD + RL+ L H HL +N
Sbjct: 20 FILALQAVLW--LFFSLPAHSVVLWRDTVTGYNLGVANGEWWRLITPILLHAGFTHLLFN 77
Query: 89 MVSLIVKGRELERMFGSVQFVVLVS 113
+S+ + LERM G +F+++ +
Sbjct: 78 SMSIFLFAPALERMLGKARFLLVYA 102
>sp|Q75A44|LDB17_ASHGO Protein LDB17 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=LDB17 PE=3 SV=2
Length = 457
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 69 YKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSF---LIISTSVCYVM 125
Y + L+ L+ DD +YY MVSL + +E M+ + +F +L++ +IS +
Sbjct: 192 YSKCELANLQRVDDFFVYYMMVSL--RSDTVEDMYNNAKFRLLLALNEQYMISNHKAGLE 249
Query: 126 LSYVIYLMNHDVTELY 141
YLMNH ++ +
Sbjct: 250 NKVYAYLMNHTASKQF 265
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%)
Query: 61 HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
++++ Q ++ RL+ + H HL +N ++L G +ERM+GS +F+++ I+ S
Sbjct: 214 NSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGS 273
Query: 121 VCYVMLS 127
+ + S
Sbjct: 274 IASFVFS 280
>sp|Q3YRZ4|NUON_EHRCJ NADH-quinone oxidoreductase subunit N OS=Ehrlichia canis (strain
Jake) GN=nuoN PE=3 SV=1
Length = 474
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 19 VLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTI-------LNQRDYKR 71
++++ F ++P T +L++ L ++ L++ W + IC+S +I + Q + KR
Sbjct: 232 IMTMFFSIVPKSTFIFLLMRILNEVLPSLSKDWQQIMICVSMLSIFVSAFGAMRQTNLKR 291
Query: 72 LVLSALEHGDDMHLYYNMVSLIVK 95
L + H+ Y ++SL +
Sbjct: 292 L----FSYAAIGHIGYMLISLAIN 311
>sp|Q9MZ03|CD38_RABIT ADP-ribosyl cyclase 1 OS=Oryctolagus cuniculus GN=CD38 PE=2 SV=1
Length = 298
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 199 HLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKLDDDCNGDDED 248
H+S I++G C T T E + +++NT T+ F D CN ED
Sbjct: 55 HVSAIVLGRCLTYTR-NMHPELRNQDCKKILNTFTSAFVSKDPCNITKED 103
>sp|P39612|YWDD_BACSU Uncharacterized protein YwdD OS=Bacillus subtilis (strain 168)
GN=ywdD PE=4 SV=2
Length = 211
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 117 ISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPA 176
IS SV ++ +Y+IY + IG+ V K R V H +L VP
Sbjct: 114 ISVSVWLILAAYMIYWV----------LIGYQGV----KEFGKRGEKLVLHTILISMVPN 159
Query: 177 VYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSR 227
V LV + ++P A F+ L+ VG C T L L R G + R
Sbjct: 160 VI---FMLVFLFNVIPAALFQSLLTPWFVGTCAFATLLFPLFGRMGCYIGR 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,128,700
Number of Sequences: 539616
Number of extensions: 3544139
Number of successful extensions: 12715
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 12670
Number of HSP's gapped (non-prelim): 40
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)