Query psy15808
Match_columns 275
No_of_seqs 273 out of 1480
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 21:53:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 1.2E-27 4E-32 199.3 17.1 173 25-215 1-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 1.4E-27 4.7E-32 201.3 10.5 174 24-216 5-186 (196)
3 2juj_A E3 ubiquitin-protein li 11.3 18 0.00061 23.0 -2.1 14 259-272 4-17 (56)
4 3mhp_C TIC62_peptide, ferredox 9.3 2.4E+02 0.0083 14.8 2.2 17 247-263 4-20 (26)
5 2kxa_A Haemagglutinin HA2 chai 7.9 2E+02 0.007 15.5 1.6 10 200-209 2-11 (30)
6 1fme_A FSD-EY peptide; beta-BE 7.9 1.9E+02 0.0065 15.0 1.4 14 2-15 8-21 (28)
7 2d9s_A CBL E3 ubiquitin protei 6.0 1E+02 0.0034 19.4 -0.3 12 260-271 7-18 (53)
8 2ooa_A E3 ubiquitin-protein li 5.9 91 0.0031 19.5 -0.6 12 260-271 9-20 (52)
9 1fgl_B HIV-1 GAG protein; cycl 4.9 2.4E+02 0.008 14.9 0.7 11 257-267 15-25 (26)
10 3a1y_A 50S ribosomal protein P 4.8 1.5E+02 0.005 18.8 -0.2 16 259-274 15-30 (58)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.95 E-value=1.2e-27 Score=199.28 Aligned_cols=173 Identities=15% Similarity=0.183 Sum_probs=129.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhcccc-ccceeechhhhcccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhh
Q psy15808 25 HLIPPGTLTLILIQTLLYIMNVLAQPWD-SLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMF 103 (275)
Q Consensus 25 ~~~ppvT~~li~~~~~v~ll~~~~~~~~-~~~l~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~ 103 (275)
++.||+|+.++++|+++|++........ ...+.+.|.. .+++||||++|+.|+|.|+.|+++||+.++.+|+.+|+.+
T Consensus 1 ~~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~ 79 (181)
T 2xov_A 1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL 79 (181)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3679999999999999999766543211 2344555543 4568999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHH---hhCCCceeEEEEeechhhHHH
Q psy15808 104 GSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRT---RQSPDVTHQLLNFSVPAVYAP 180 (275)
Q Consensus 104 G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~---~~~p~~~~~l~~~~i~~~~~~ 180 (275)
|++||+.+|+.+++.+++.+.+. .++ ..+|+||+++|++++.. ...|+.+.. ++.+.....
T Consensus 80 G~~~fl~~yl~~~i~~~l~~~~~--------~~~-----~~vGaSGai~gl~g~~~~~~~~~p~~~~~---l~~~~~~~~ 143 (181)
T 2xov_A 80 GSGKLIVITLISALLSGYVQQKF--------SGP-----WFGGLSGVVYALMGYVWLRGERDPQSGIY---LQRGLIIFA 143 (181)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--------HCS-----CCCCSHHHHHHHHHHHHHHHHHCGGGSCC---CCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh--------cCC-----CceeHHHHHHHHHHHHHHHHhhCcCceee---eHHHHHHHH
Confidence 99999999999999999876432 122 28999999999998653 466765432 222222111
Q ss_pred HHHHHHHHHh---CCchhHHHHHHHHHHHHHHHHHhhc
Q psy15808 181 WIELVIIHLM---VPNASFKGHLSGILVGLCYTETSLG 215 (275)
Q Consensus 181 ~~~l~~~~~~---~~~vs~~~hl~G~l~G~l~~~~~~~ 215 (275)
.. .+...+. .+++++.+|++|+++|+++++...|
T Consensus 144 ~~-~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 144 LI-WIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp HH-HHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 11 1223332 2589999999999999999986654
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.94 E-value=1.4e-27 Score=201.27 Aligned_cols=174 Identities=18% Similarity=0.228 Sum_probs=128.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhcccc-ccceeechhhhcccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHh
Q psy15808 24 FHLIPPGTLTLILIQTLLYIMNVLAQPWD-SLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERM 102 (275)
Q Consensus 24 ~~~~ppvT~~li~~~~~v~ll~~~~~~~~-~~~l~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~ 102 (275)
-.+.||+|+.++++|+++|+++...+... .+.+.+.|..+ .++||||++|++|+|.|+.|+++||+.++.+|+.+|+.
T Consensus 5 ~~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~ 83 (196)
T 2nr9_A 5 LAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERT 83 (196)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999766542211 23455566554 56799999999999999999999999999999999999
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHh---hCCCceeEEEEeechhhHH
Q psy15808 103 FGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTR---QSPDVTHQLLNFSVPAVYA 179 (275)
Q Consensus 103 ~G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~---~~p~~~~~l~~~~i~~~~~ 179 (275)
+|++||+.+|+++++.+++++.+. .++ ..+|+||+++|++++... ..|+. +.++.+....
T Consensus 84 ~G~~~~l~~yl~~~~~~~l~~~~~--------~~~-----~~vGaSGai~gl~g~~~~~~~~~~~~----~~~~~~~~~~ 146 (196)
T 2nr9_A 84 FGSVKLLMLYVVASAITGYVQNYV--------SGP-----AFFGLSGVVYAVLGYVFIRDKLNHHL----FDLPEGFFTM 146 (196)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHH--------HCS-----CCCCSHHHHHHHHHHHHHHHHSSTTS----CCCCCSSTTT
T ss_pred HChHHHHHHHHHHHHHHHHHHHHh--------cCC-----CeeeHHHHHHHHHHHHHHHHHhcchh----hcchHHHHHH
Confidence 999999999999999999876432 122 289999999999986543 34432 1122222211
Q ss_pred HHHHHHHHHHhC----CchhHHHHHHHHHHHHHHHHHhhcc
Q psy15808 180 PWIELVIIHLMV----PNASFKGHLSGILVGLCYTETSLGR 216 (275)
Q Consensus 180 ~~~~l~~~~~~~----~~vs~~~hl~G~l~G~l~~~~~~~~ 216 (275)
..+ .+...+.. +++++.+|++|+++|.++++...+.
T Consensus 147 ~~~-~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~ 186 (196)
T 2nr9_A 147 LLV-GIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKL 186 (196)
T ss_dssp TTT-TTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 111 11222222 4899999999999999999866543
No 3
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=11.34 E-value=18 Score=23.00 Aligned_cols=14 Identities=7% Similarity=0.240 Sum_probs=10.7
Q ss_pred cCCCCccchhhhcc
Q psy15808 259 TDNTKNDAATIVSA 272 (275)
Q Consensus 259 ~~~~~~~~~~~~~~ 272 (275)
.+|+|++++++||-
T Consensus 4 ~~p~e~~Ia~L~sm 17 (56)
T 2juj_A 4 SPQLSSEIENLMSQ 17 (56)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHc
Confidence 45677899999873
No 4
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=9.33 E-value=2.4e+02 Score=14.76 Aligned_cols=17 Identities=6% Similarity=0.143 Sum_probs=11.3
Q ss_pred CCCCCCCccccccCCCC
Q psy15808 247 EDSDTSASFLDFTDNTK 263 (275)
Q Consensus 247 ~~~~~~~s~~~~~~~~~ 263 (275)
++..+=+.|.|+++|+.
T Consensus 4 rPlSpy~~Y~dlKPPsS 20 (26)
T 3mhp_C 4 QPLSPYTAYDDLKPPSS 20 (26)
T ss_dssp CCSSTTTTBTTSSCSSC
T ss_pred cccCccccccccCCCCC
Confidence 34455577888887764
No 5
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=7.93 E-value=2e+02 Score=15.51 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=5.6
Q ss_pred HHHHHHHHHH
Q psy15808 200 LSGILVGLCY 209 (275)
Q Consensus 200 l~G~l~G~l~ 209 (275)
+.|+++|++-
T Consensus 2 lFGAIAGfie 11 (30)
T 2kxa_A 2 LFGAIAGFIE 11 (30)
T ss_dssp HHHHHHHHHH
T ss_pred cchhhhhhhh
Confidence 3566666654
No 6
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=7.88 E-value=1.9e+02 Score=14.99 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=10.1
Q ss_pred ccccccchhHHHHH
Q psy15808 2 ARRFFRRELGILLL 15 (275)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (275)
.-|++|+++++--+
T Consensus 8 kgrtfrnekelrdf 21 (28)
T 1fme_A 8 KGRTFRNEKELRDF 21 (28)
T ss_dssp SSCEECCHHHHHHH
T ss_pred cccccccHHHHHHH
Confidence 35889999985543
No 7
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=5.99 E-value=1e+02 Score=19.38 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=9.1
Q ss_pred CCCCccchhhhc
Q psy15808 260 DNTKNDAATIVS 271 (275)
Q Consensus 260 ~~~~~~~~~~~~ 271 (275)
+|.++.++++|+
T Consensus 7 ~~~e~~I~~L~~ 18 (53)
T 2d9s_A 7 GQLSSEIERLMS 18 (53)
T ss_dssp SCSHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 466678898886
No 8
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=5.92 E-value=91 Score=19.51 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=8.4
Q ss_pred CCCCccchhhhc
Q psy15808 260 DNTKNDAATIVS 271 (275)
Q Consensus 260 ~~~~~~~~~~~~ 271 (275)
+|.+++++++||
T Consensus 9 ~~~~~~Ia~Lm~ 20 (52)
T 2ooa_A 9 ENVDAKIAKLMG 20 (52)
T ss_dssp --CHHHHHHHHH
T ss_pred CChHHHHHHHHH
Confidence 366689999987
No 9
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=4.86 E-value=2.4e+02 Score=14.91 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=6.9
Q ss_pred cccCCCCccch
Q psy15808 257 DFTDNTKNDAA 267 (275)
Q Consensus 257 ~~~~~~~~~~~ 267 (275)
...||..+|||
T Consensus 15 q~R~P~GsDIA 25 (26)
T 1fgl_B 15 QLREPRGSDIA 25 (26)
T ss_pred CccCCCccccc
Confidence 45566667765
No 10
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=4.76 E-value=1.5e+02 Score=18.79 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=0.0
Q ss_pred cCCCCccchhhhcccC
Q psy15808 259 TDNTKNDAATIVSASS 274 (275)
Q Consensus 259 ~~~~~~~~~~~~~~~~ 274 (275)
++|+++++.++++|..
T Consensus 15 ~~~t~~~I~~il~aaG 30 (58)
T 3a1y_A 15 KEINEENLKAVLQAAG 30 (58)
T ss_dssp CCCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHcC
Done!