RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15808
(275 letters)
>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family. This family contains
integral membrane proteins that are related to
Drosophila rhomboid protein. Members of this family are
found in bacteria and eukaryotes. Rhomboid promotes the
cleavage of the membrane-anchored TGF-alpha-like growth
factor Spitz, allowing it to activate the Drosophila EGF
receptor. Analysis has shown that Rhomboid-1 is an
intramembrane serine protease (EC:3.4.21.105).
Parasite-encoded rhomboid enzymes are also important for
invasion of host cells by Toxoplasma and the malaria
parasite.
Length = 146
Score = 63.4 bits (155), Expect = 1e-12
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 18/152 (11%)
Query: 63 ILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVC 122
+L + RL+ S H +HL +NM++L+ G LER+ GSV+F++L +
Sbjct: 1 LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLL-------YLLS 53
Query: 123 YVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN----FSVPAVY 178
+ S + YL + + ++G S +F + P L N +
Sbjct: 54 GLAGSLLSYLFSPASS----PSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGI 109
Query: 179 APWIELVIIHLMVPNASFKGHLSGILVGLCYT 210
L+ +P S HL G++ GL
Sbjct: 110 ILLNLLLGF---LPGISNFAHLGGLIAGLLLG 138
>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid
transport and metabolism].
Length = 228
Score = 52.5 bits (126), Expect = 4e-08
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 33/200 (16%)
Query: 28 PPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILN-----------QRDYKRLVLSA 76
PP TL LIL+ L++++ ++ W ++ + + + RL+ +
Sbjct: 17 PPVTLFLILLNILVFLLELV-LGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAI 75
Query: 77 LEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHD 136
H +HL +NM++L V G LER G+++F++ + + V+
Sbjct: 76 FLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAP--- 132
Query: 137 VTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVI---IHLMVPN 193
++G S +F + P LL S+P I ++I L
Sbjct: 133 -------SLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPA--LILILIWLLYSLFSGA 183
Query: 194 ASFK------GHLSGILVGL 207
SF HL G++ GL
Sbjct: 184 GSFGPSVAWSAHLGGLIGGL 203
>gnl|CDD|219898 pfam08551, DUF1751, Eukaryotic integral membrane protein (DUF1751).
This domain is found in eukaryotic integral membrane
proteins. YOL107W, a Saccharomyces cerervisiae protein,
has been shown to localise COP II vesicles.
Length = 99
Score = 36.0 bits (84), Expect = 0.003
Identities = 13/66 (19%), Positives = 34/66 (51%)
Query: 88 NMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGF 147
++V+L++ G+ LER++GS + + + + + T++ + ++Y++ L G
Sbjct: 27 SLVTLLLGGKYLERLWGSKELLKFILVVNVITNLLVFLYYLLLYMITRSERYLDVPISGG 86
Query: 148 SAVLFS 153
+L
Sbjct: 87 YGILAG 92
>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional.
Length = 278
Score = 31.7 bits (72), Expect = 0.37
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 32 LTLILIQTLLYIMNVLAQ------PWDSLGICISAH--TILNQRDYKRLVLSALEHGDDM 83
+ + +IQ +++I++V + P DSL + + A+ + + Q + RL+L H +
Sbjct: 57 MAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIF 116
Query: 84 HLYYNMVSLIVKGRELERMFGSVQFVVL 111
H ++N+ + G LE+ +G V+ ++L
Sbjct: 117 HTFFNVFFQLRMGFTLEKNYGIVKIIIL 144
>gnl|CDD|150723 pfam10081, DUF2319, Predicted membrane protein (DUF2319). Members
of this family of hypothetical bacterial proteins have
no known function.
Length = 534
Score = 30.3 bits (69), Expect = 1.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 186 IIHLM-VPNASFKGHLSGILVGLCYTET--SLGRLVERSGRSVSRVVN 230
+ LM +P +L G+LV L +LGRL+ R R ++R +
Sbjct: 98 VRALMGMPPLETAAYLRGVLVALLVFGALVALGRLLRRLIRFLARRLQ 145
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 29.7 bits (67), Expect = 2.2
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 27 IPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRD 68
IP GTL IL T++Y+ +V+ G C+ ++ D
Sbjct: 313 IPKGTLLAILTTTVVYLGSVV-----LFGACVVRDATGDKND 349
>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
[Posttranslational modification, protein turnover,
chaperones].
Length = 436
Score = 28.9 bits (65), Expect = 3.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 10 LGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGI 56
LG L L++++LS GF + PG + IL+ LL +L + G+
Sbjct: 243 LGFLGLIFELLSPGFGV--PGIIGAILL--LLGFYGLLFLGINWAGL 285
>gnl|CDD|235805 PRK06458, PRK06458, hydrogenase 4 subunit F; Validated.
Length = 490
Score = 28.4 bits (64), Expect = 5.3
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 13 LLL---LYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDY 69
+LL LY VL ++++ + LL I +L+ + ++A +L QRD
Sbjct: 255 VLLNVALYAVLR--YYILIDAAIGSDFPGRLLLIFGLLS-------VLVAAFFLLRQRDI 305
Query: 70 KRLV-LSALEH 79
KRL S++EH
Sbjct: 306 KRLFAYSSIEH 316
>gnl|CDD|167141 PRK01021, lpxB, lipid-A-disaccharide synthase; Reviewed.
Length = 608
Score = 27.8 bits (62), Expect = 7.0
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 129 VIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELV--- 185
+IY N ++ + S L + T L F++ Y P + +
Sbjct: 76 IIYFRNLNIASSRP--LSVSKTLSLLVLS-------ATAITLPFAIGTRYYPNMTWMASP 126
Query: 186 -IIHLMVPNASFKGHLSGIL 204
I HL +P A+ HL G +
Sbjct: 127 NIFHLPLPPANLSWHLIGCI 146
>gnl|CDD|225277 COG2414, COG2414, Aldehyde:ferredoxin oxidoreductase [Energy
production and conversion].
Length = 614
Score = 27.7 bits (62), Expect = 9.4
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 40 LLYIMNVLAQPWDSLGICISAHTILNQRDYKRLV 73
L+ L DSLG+C L D L+
Sbjct: 486 LVIESQDLEAVIDSLGVCRFHRFGLGLEDLAELL 519
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.408
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,758,296
Number of extensions: 1310251
Number of successful extensions: 1529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1525
Number of HSP's successfully gapped: 38
Length of query: 275
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 179
Effective length of database: 6,679,618
Effective search space: 1195651622
Effective search space used: 1195651622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)