RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15808
         (275 letters)



>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
          Length = 180

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 11/182 (6%)

Query: 28  PPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYY 87
            P T  +++   +++I   +    + +           + ++ R    AL H   MH+ +
Sbjct: 4   GPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILF 63

Query: 88  NMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGF 147
           N++     G  +E+  GS + +V+     + +       S   +     ++ +    +G+
Sbjct: 64  NLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGG---LSGVVYALMGY 120

Query: 148 SAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGL 207
             +                       +      WI      L   + +   H++G+ VGL
Sbjct: 121 VWLRGERDPQSGIYLQ--------RGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGL 172

Query: 208 CY 209
             
Sbjct: 173 AM 174


>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 189

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 11/182 (6%)

Query: 28  PPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYY 87
              TL L  +  L+YI   L    D + +           +  R +   L H  ++H+ +
Sbjct: 6   GKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILF 65

Query: 88  NMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGF 147
           N+    + G  +ER FGSV+ ++L       T      +S   +              G 
Sbjct: 66  NLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFF----------GLSGV 115

Query: 148 SAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGL 207
              +     IR + +  +      F    +    +  +   L         H+SG++VGL
Sbjct: 116 VYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISP-LFGVEMGNAAHISGLIVGL 174

Query: 208 CY 209
            +
Sbjct: 175 IW 176


>d1r12a_ c.23.14.3 (A:) ADP ribosyl cyclase {California sea hare
           (Aplysia californica) [TaxId: 6500]}
          Length = 251

 Score = 31.3 bits (71), Expect = 0.081
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 199 HLSGILVGLC--YTETSLGRLVERSGRSVSRVVNTLTNVFKLDDDCNGDDEDSD 250
            L  + +G C  Y  T    ++ R     S +       F   + C+ D     
Sbjct: 6   ELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYK 59


>d2ef1a1 c.23.14.3 (A:45-291) ADP ribosyl cyclase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 247

 Score = 25.9 bits (57), Expect = 5.8
 Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 2/52 (3%)

Query: 199 HLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKLDDDCNGDDEDSD 250
                ++  C   T +    E        V +     F     CN  +ED  
Sbjct: 14  RFPETVLARCVKYTEI--HPEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQ 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 954,785
Number of extensions: 40508
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 5
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.3 bits)