Query psy15810
Match_columns 343
No_of_seqs 112 out of 352
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 21:56:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2948|consensus 100.0 2E-133 4E-138 945.4 28.9 320 6-333 2-325 (327)
2 PF03690 UPF0160: Uncharacteri 100.0 4E-130 1E-134 947.8 32.0 314 9-330 1-318 (318)
3 COG4286 Uncharacterized conser 100.0 2E-106 5E-111 757.4 27.0 301 6-330 2-306 (306)
4 PF03681 UPF0150: Uncharacteri 57.3 12 0.00027 26.2 2.9 20 313-332 26-45 (48)
5 PRK11709 putative L-ascorbate 53.1 23 0.0005 35.6 5.1 38 51-94 313-353 (355)
6 PLN02707 Soluble inorganic pyr 50.3 63 0.0014 31.6 7.3 72 261-332 175-251 (267)
7 TIGR03793 TOMM_pelo TOMM prope 44.3 9.2 0.0002 30.5 0.5 12 288-299 65-76 (77)
8 COG2404 Predicted phosphohydro 42.7 7.1 0.00015 39.3 -0.4 39 65-104 86-126 (339)
9 PRK10017 colanic acid biosynth 38.5 41 0.00088 34.7 4.3 14 46-59 114-127 (426)
10 PRK15008 HTH-type transcriptio 36.7 26 0.00055 31.7 2.3 35 94-138 51-85 (212)
11 TIGR03609 S_layer_CsaB polysac 32.6 47 0.001 31.5 3.4 38 21-58 14-73 (298)
12 PHA02094 hypothetical protein 31.5 44 0.00094 26.4 2.4 41 97-137 1-53 (81)
13 PF00386 C1q: C1q domain; Int 28.8 26 0.00057 29.1 0.9 23 51-73 23-45 (127)
14 PF10949 DUF2777: Protein of u 25.4 22 0.00048 32.9 -0.1 52 268-319 74-139 (185)
15 COG1922 WecG Teichoic acid bio 24.7 46 0.001 32.3 1.9 54 9-65 136-202 (253)
16 smart00110 C1Q Complement comp 23.7 42 0.0009 29.1 1.2 23 51-73 29-51 (135)
17 KOG2408|consensus 23.6 78 0.0017 35.1 3.6 39 156-203 398-436 (719)
18 PF04369 Lactococcin: Lactococ 22.8 63 0.0014 24.8 1.9 26 287-313 8-33 (60)
19 COG1598 Predicted nuclease of 21.8 1.2E+02 0.0025 23.5 3.3 19 314-332 29-47 (73)
No 1
>KOG2948|consensus
Probab=100.00 E-value=1.9e-133 Score=945.41 Aligned_cols=320 Identities=52% Similarity=0.922 Sum_probs=308.1
Q ss_pred cCcceEEecCCCcchhHHHHHHHHHHh--CCCCeEEeecCccccccccEEEecCCcccCCCCCCcCCCCCcccccccccc
Q psy15810 6 RTVKTIGTHSGMFHCDEVLGCSMLKLL--YPDAEIIRTRDQKELDKLDLVLDVGGEYNPDKLRFDHHQKTFNETFASVRK 83 (343)
Q Consensus 6 ~~~~~IgTH~G~FHaDEvlA~~lL~~l--y~~a~IvRTRD~~~l~~~diVvDVGg~YDp~~~rfDHHQr~F~~tf~~~r~ 83 (343)
+++++||||||+|||||+|||+|||++ |+||+|||||||++|++|||||||||+|||+++|||||||+|+|||++.
T Consensus 2 ~~~~~i~THnG~FH~DEalAc~mLr~lp~f~dAeIvRtRd~~~l~s~DIvvDVGg~yDp~~~ryDHHQr~F~ETfs~~-- 79 (327)
T KOG2948|consen 2 NSTKKIGTHNGTFHCDEALACFMLRLLPEFKDAEIVRTRDPKVLESCDIVVDVGGVYDPEKKRYDHHQRGFFETFSPK-- 79 (327)
T ss_pred CCCceEEecCCceehhHHHHHHHHHhccccCCCeeEecCCHHHHhhcCEEEecCccccccccccchhhhhhhhhcCCc--
Confidence 457899999999999999999999998 9999999999999999999999999999999999999999999999985
Q ss_pred cccccccccccccchHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHHhhhhhcccCCCCCCC-CCCcccccCChhhhhc
Q psy15810 84 EDKFNKVKLSSAGLIYCHFGLDILKKLSPIQE-EYFLNKLFDKVYDNLIQEVDGIDNGIPMFE-GEPIYHISTHLGARVS 161 (343)
Q Consensus 84 ~~~~~~~klSSAGLIykhfG~~ii~~~~~~~~-~~~~~~l~~kvy~~fI~~IDaiDNGi~~~~-~~~~y~~~t~ls~~V~ 161 (343)
++||||||||||||||++||+++++.+. +++++.+|.+||++||+++|||||||++|. .+|+|.++|+||+||+
T Consensus 80 ----~~tKLSSAGLIykhyG~~vi~~~l~~~~s~~~~~~l~~kvY~~Fve~~DAiDNGi~~y~~~~Pry~~~~~l~~rv~ 155 (327)
T KOG2948|consen 80 ----YKTKLSSAGLIYKHYGREVISKILQNKVSSSDLDLLYDKVYKNFVEALDAIDNGISQYGEIEPRYKSSTSLSHRVG 155 (327)
T ss_pred ----cceeecccceeHHHhhHHHHHHHhcccCChhHHHHHHHHHHHHHHHHhhccccchhhhcCCCCccccccchHHHHh
Confidence 9999999999999999999999998866 889999999999999999999999999996 4899999999999999
Q ss_pred ccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhhccCCCCcEEEeCCCCCchhhHHhhh
Q psy15810 162 RLNPKWNDTKTVDEMELFKKAMAITLEEFQDRIDYYCTQWWPARKLVLDAIKERFSLHESGKIIELKTPCPWKSHFFELE 241 (343)
Q Consensus 162 ~lNP~w~~~~~~~~de~F~~A~~l~~~ef~~~v~~~~~~~lpAr~~V~~A~~~r~~~~~sg~Il~l~~~~Pwk~~l~~lE 241 (343)
+|||.||+.+..+++++|.+||+++|++|++.|..++++|+|||++|++|+++|+++|+||.|++++++||||+|||+||
T Consensus 156 ~~N~~w~e~~~~~~~e~F~~Am~~vg~ef~~~v~~~~~sWlPar~~v~~ai~er~~~d~sG~i~v~~~~cPWk~hlfelE 235 (327)
T KOG2948|consen 156 RFNPDWNEDSDDDEDERFQRAMDLVGKEFVNSVKFYANSWLPARELVEEAIAERFDVDPSGIILVLKQFCPWKEHLFELE 235 (327)
T ss_pred hcCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHhcCCCCCceEEEecCCCchHHHHHHHH
Confidence 99999997322279999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCceEEEEEeCCCCCCCeEEEEEeCCCCCCcCCcccchhhcCCChhhhhhhcCCCCcEEeecCCcccccCCHHHH
Q psy15810 242 QEMELGDQIRFAIFPADDFNSTFRVQAVSLTEKSFVLRTPLYKTWMGLRDDDLSSVAGIPDCIFAHANGFIGGNKTREGA 321 (343)
Q Consensus 242 ~e~~~~~~i~fviyp~~~~~~~wriq~Vp~~~~sF~~R~pLP~~WrGlrdeeL~~~sGI~g~vF~H~sGFigg~~t~e~A 321 (343)
+|++++..|+||||+++ +|+|||||||++++||++|+|||++|||||||||+++||||||+|||+|||||||+|+|||
T Consensus 236 ~e~~ie~~i~fvlf~d~--~~~wRVqaVpv~p~sFe~R~pLp~~WRGLrdeeLs~~SgIpgc~FVH~SGFIGgn~T~EgA 313 (327)
T KOG2948|consen 236 KEYKIEVKIKFVLFTDE--SGSWRVQAVPVDPGSFESRKPLPEPWRGLRDEELSEVSGIPGCIFVHASGFIGGNKTREGA 313 (327)
T ss_pred HHhCCCcceEEEEEeCC--CCcEEEEEEecCCCcccccCCCchhhccccchhhhhhcCCCCeEEEeecccccCcccHHHH
Confidence 99999999999999997 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy15810 322 LQMALKTLELAE 333 (343)
Q Consensus 322 l~mA~~al~~~~ 333 (343)
|+||++||+..+
T Consensus 314 l~Mar~sl~~~e 325 (327)
T KOG2948|consen 314 LEMARKSLEADE 325 (327)
T ss_pred HHHHHHhhcccc
Confidence 999999998654
No 2
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=100.00 E-value=4.5e-130 Score=947.76 Aligned_cols=314 Identities=54% Similarity=0.983 Sum_probs=304.7
Q ss_pred ceEEecCCCcchhHHHHHHHHHHh--CCCCeEEeecCccccccccEEEecCCcccCCCCCCcCCCCCccccccccccccc
Q psy15810 9 KTIGTHSGMFHCDEVLGCSMLKLL--YPDAEIIRTRDQKELDKLDLVLDVGGEYNPDKLRFDHHQKTFNETFASVRKEDK 86 (343)
Q Consensus 9 ~~IgTH~G~FHaDEvlA~~lL~~l--y~~a~IvRTRD~~~l~~~diVvDVGg~YDp~~~rfDHHQr~F~~tf~~~r~~~~ 86 (343)
|+||||||+|||||||||+||++| |++++|+|||||++|++|||||||||+|||+++|||||||+|++||+..
T Consensus 1 K~I~TH~G~FHaDEvlA~~lL~~l~~y~~~~IvRTRd~~~l~~cDiVvDVGg~yDp~~~rfDHHQ~~f~~tf~~~----- 75 (318)
T PF03690_consen 1 KKIGTHSGSFHADEVLACALLKLLPEYKDAEIVRTRDPEVLEKCDIVVDVGGVYDPEKGRFDHHQRGFNETFSRE----- 75 (318)
T ss_pred CeEEecCCCcchHHHHHHHHHHHccccCCCcEEEeCChhhhccCCEEEecCCccccccCccccccccCccccccC-----
Confidence 589999999999999999999998 9999999999999999999999999999999999999999999999653
Q ss_pred ccccccccccchHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccCChhhhhcccCC
Q psy15810 87 FNKVKLSSAGLIYCHFGLDILKKLSPIQE-EYFLNKLFDKVYDNLIQEVDGIDNGIPMFEGEPIYHISTHLGARVSRLNP 165 (343)
Q Consensus 87 ~~~~klSSAGLIykhfG~~ii~~~~~~~~-~~~~~~l~~kvy~~fI~~IDaiDNGi~~~~~~~~y~~~t~ls~~V~~lNP 165 (343)
++||||||||||+|||++||+++++... ++.++.||++||++||++|||||||+++++++++|.++|+||+||++|||
T Consensus 76 -~~~~lSSAGLIy~~fG~~ii~~~~~~~~~~~~~~~l~~~iy~~fv~~iDaiDNGv~~~~~~~~y~~~~~ls~~V~~~Np 154 (318)
T PF03690_consen 76 -NGIKLSSAGLIYKHFGKEIIRNLLGDPVDEEDIELLYEKIYESFVESIDAIDNGVSIYDGEPKYKINTSLSSRVSRLNP 154 (318)
T ss_pred -CCceeecccHHHHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHHhhhhhcCCcccCccccccCCCCHHHHHHHhCC
Confidence 9999999999999999999999998766 88999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhhccCCCCcEEEeCCCCCchhhHHhhhhhh
Q psy15810 166 KWNDTKT-VDEMELFKKAMAITLEEFQDRIDYYCTQWWPARKLVLDAIKERFSLHESGKIIELKTPCPWKSHFFELEQEM 244 (343)
Q Consensus 166 ~w~~~~~-~~~de~F~~A~~l~~~ef~~~v~~~~~~~lpAr~~V~~A~~~r~~~~~sg~Il~l~~~~Pwk~~l~~lE~e~ 244 (343)
.||++.. ++++++|++||+|++++|.++|.++..+|+|||++|++|+++|++||+||+||+|+++||||+||++||+++
T Consensus 155 ~w~~~~~~~~~~~~F~~A~~l~~~~f~~~v~~~~~~wlpAr~~V~~A~~~r~~v~~sg~Il~l~~~~Pwk~~l~~le~e~ 234 (318)
T PF03690_consen 155 SWNEPDDDEDEDERFEKAMELAGEEFENRVKYYAKSWLPARSIVEEAIENRFEVHPSGRILVLDRSCPWKEHLFELEEEL 234 (318)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCCCCCEEEecCCCcHHHHHHHHhhhh
Confidence 9999752 279999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEEeCCCCCCCeEEEEEeCCCCCCcCCcccchhhcCCChhhhhhhcCCCCcEEeecCCcccccCCHHHHHHH
Q psy15810 245 ELGDQIRFAIFPADDFNSTFRVQAVSLTEKSFVLRTPLYKTWMGLRDDDLSSVAGIPDCIFAHANGFIGGNKTREGALQM 324 (343)
Q Consensus 245 ~~~~~i~fviyp~~~~~~~wriq~Vp~~~~sF~~R~pLP~~WrGlrdeeL~~~sGI~g~vF~H~sGFigg~~t~e~Al~m 324 (343)
+++++|+|||||++ +++|||||||++++||++|+|||++|||||||||+++||||||+|||+|||||||+|+||||+|
T Consensus 235 ~~~~~i~fvi~p~~--~~~wriq~Vp~~~~sF~~R~~LP~~WrGlrdeeL~~vsGI~g~vFvH~sGFigg~kt~egAl~m 312 (318)
T PF03690_consen 235 KIEGEILFVIYPDG--SGGWRIQAVPVSPGSFENRKPLPEEWRGLRDEELSEVSGIPGAVFVHASGFIGGAKTREGALEM 312 (318)
T ss_pred CCCCceEEEEEECC--CCCEEEEEecCCCCCcccccCCChhhCCCCHHHHHHhcCCCCcEEEcCCCCeeecCCHHHHHHH
Confidence 99999999999997 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy15810 325 ALKTLE 330 (343)
Q Consensus 325 A~~al~ 330 (343)
|++||+
T Consensus 313 A~~aLe 318 (318)
T PF03690_consen 313 ARKALE 318 (318)
T ss_pred HHHHhC
Confidence 999985
No 3
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=100.00 E-value=2.3e-106 Score=757.40 Aligned_cols=301 Identities=47% Similarity=0.814 Sum_probs=280.2
Q ss_pred cCcceEEecCCCcchhHHHHHHHHHHh--CCCCeEEeecCccccccccEEEecCCcccCCCCCCcCCCCCcccccccccc
Q psy15810 6 RTVKTIGTHSGMFHCDEVLGCSMLKLL--YPDAEIIRTRDQKELDKLDLVLDVGGEYNPDKLRFDHHQKTFNETFASVRK 83 (343)
Q Consensus 6 ~~~~~IgTH~G~FHaDEvlA~~lL~~l--y~~a~IvRTRD~~~l~~~diVvDVGg~YDp~~~rfDHHQr~F~~tf~~~r~ 83 (343)
++|++|+||||+|||||||||+||+++ ||+++|||||||++|+.|||||||||+|||+.+|||||||+|++||++.
T Consensus 2 ~~p~~l~THsG~FHaDEvlA~~~L~~l~l~~dakIVRsRdp~~l~s~div~DVGg~yd~e~krFDHHQr~f~~tfspk-- 79 (306)
T COG4286 2 QIPMKLVTHSGSFHADEVLASAVLRLLDLFPDAKIVRSRDPQVLDSCDIVYDVGGVYDPEKKRFDHHQRSFNETFSPK-- 79 (306)
T ss_pred CCCceEEecCCcccHHHHHHHHHHHHhccCCcceeeeccChhhhhcCCEEEecCcccccccccccccccccCcccCcc--
Confidence 578999999999999999999999886 9999999999999999999999999999999999999999999999996
Q ss_pred cccccccccccccchHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHHhhhhhcccCCCCCCC-CCCcccccCChhhhhc
Q psy15810 84 EDKFNKVKLSSAGLIYCHFGLDILKKLSPIQE-EYFLNKLFDKVYDNLIQEVDGIDNGIPMFE-GEPIYHISTHLGARVS 161 (343)
Q Consensus 84 ~~~~~~~klSSAGLIykhfG~~ii~~~~~~~~-~~~~~~l~~kvy~~fI~~IDaiDNGi~~~~-~~~~y~~~t~ls~~V~ 161 (343)
|.||||||||||||||+++|.. +++.. +.+++.||+++|.+||+++||+|||+..|. -+| + .+||.+|+
T Consensus 80 ----y~~klSSaGLI~kyfgr~~l~~-~~~~~~~~~~~~l~e~vy~~fv~~~Da~DNG~~~~~~i~p-f---~sl~~iv~ 150 (306)
T COG4286 80 ----YKTKLSSAGLIYKYFGRDGLAT-YGINRSEDDLETLYEKVYNTFVLGVDAIDNGISIYGEIEP-F---RSLPDIVE 150 (306)
T ss_pred ----ccccccccchHHHHhhhhHHHH-hCCccchhhHHHHHHHHHHhhhcccccccCccccccccCc-c---cchHHHHH
Confidence 9999999999999999999987 45555 789999999999999999999999999993 233 2 46999999
Q ss_pred ccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhhccCCCCcEEEeCCCCCchhhHHhhh
Q psy15810 162 RLNPKWNDTKTVDEMELFKKAMAITLEEFQDRIDYYCTQWWPARKLVLDAIKERFSLHESGKIIELKTPCPWKSHFFELE 241 (343)
Q Consensus 162 ~lNP~w~~~~~~~~de~F~~A~~l~~~ef~~~v~~~~~~~lpAr~~V~~A~~~r~~~~~sg~Il~l~~~~Pwk~~l~~lE 241 (343)
.|||.|++++ ..|+.|..|++++. +|++++.....+|+||...|++|+.++. +-||+|+++|||++|+++||
T Consensus 151 ~~np~~~~e~--~~d~~F~~al~~a~-~~l~~~~~~~~~w~~a~~~v~k~I~e~~-----~~iL~ld~~~pw~~~i~eie 222 (306)
T COG4286 151 SFNPDWSDED--ADDEGFLEALAFAS-DFLDNLFKTIVSWLRAYALVVKAIAETE-----DVILVLDRFCPWKEHIFEIE 222 (306)
T ss_pred hcCCCcCCCC--cchHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHhhC-----CcEEEecCCCcHHHHHHHhc
Confidence 9999999765 46899999999998 6888888777899999999999999973 44999999999999999999
Q ss_pred hhhccCCceEEEEEeCCCCCCCeEEEEEeCCCCCCcCCcccchhhcCCChhhhhhhcCCCCcEEeecCCcccccCCHHHH
Q psy15810 242 QEMELGDQIRFAIFPADDFNSTFRVQAVSLTEKSFVLRTPLYKTWMGLRDDDLSSVAGIPDCIFAHANGFIGGNKTREGA 321 (343)
Q Consensus 242 ~e~~~~~~i~fviyp~~~~~~~wriq~Vp~~~~sF~~R~pLP~~WrGlrdeeL~~~sGI~g~vF~H~sGFigg~~t~e~A 321 (343)
+| ++++++||+||+ +++||+++||++.++|+.|.||||+||||+++||+++||||||+|||++||||+|+|+|+|
T Consensus 223 ~e--~~~~~~Fv~fp~---~~aw~l~~Ip~~~~~fe~R~plpe~WrGL~geeL~~~sGIpGc~F~Ha~gFig~~kt~E~~ 297 (306)
T COG4286 223 AE--IKKDFKFVVFPD---SSAWRLRGIPKDLTRFEVRVPLPEEWRGLRGEELSTVSGIPGCIFCHAGGFIGGNKTREAA 297 (306)
T ss_pred cc--ccCceEEEEecC---CCceEEEeccCCCCceeecCCCChhhcccccchhhhhcCCCCeEEEecccceeccccHHHH
Confidence 99 478999999999 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy15810 322 LQMALKTLE 330 (343)
Q Consensus 322 l~mA~~al~ 330 (343)
|+||++||+
T Consensus 298 lem~~lsl~ 306 (306)
T COG4286 298 LEMARLSLK 306 (306)
T ss_pred HHHHHhhcC
Confidence 999999984
No 4
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=57.25 E-value=12 Score=26.20 Aligned_cols=20 Identities=40% Similarity=0.300 Sum_probs=17.4
Q ss_pred cccCCHHHHHHHHHHHHHHh
Q psy15810 313 GGNKTREGALQMALKTLELA 332 (343)
Q Consensus 313 gg~~t~e~Al~mA~~al~~~ 332 (343)
+-.+|+|.|++||+.||+..
T Consensus 26 t~G~t~eea~~~~~eal~~~ 45 (48)
T PF03681_consen 26 TQGDTLEEALENAKEALELW 45 (48)
T ss_dssp EEESSHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 56789999999999999753
No 5
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=53.10 E-value=23 Score=35.64 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=27.4
Q ss_pred cEEEecCCcccCCC---CCCcCCCCCccccccccccccccccccccc
Q psy15810 51 DLVLDVGGEYNPDK---LRFDHHQKTFNETFASVRKEDKFNKVKLSS 94 (343)
Q Consensus 51 diVvDVGg~YDp~~---~rfDHHQr~F~~tf~~~r~~~~~~~~klSS 94 (343)
=.+..|||.|.-.. ++-=||-|||++-|+.. .++|+.|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 353 (355)
T PRK11709 313 PFIWQVGGKFTYPQDKDRFEYHYPRGFDDCFTIE------PDLPFKS 353 (355)
T ss_pred ceEEecCCEecCCCCcCceeEecCCCchhhhcCC------CCCCccc
Confidence 48999999995322 24448999999999864 5556655
No 6
>PLN02707 Soluble inorganic pyrophosphatase
Probab=50.30 E-value=63 Score=31.60 Aligned_cols=72 Identities=21% Similarity=0.106 Sum_probs=53.1
Q ss_pred CCCeEEEEEeCCCCCC---cCCcccchhhcCCCh--hhhhhhcCCCCcEEeecCCcccccCCHHHHHHHHHHHHHHh
Q psy15810 261 NSTFRVQAVSLTEKSF---VLRTPLYKTWMGLRD--DDLSSVAGIPDCIFAHANGFIGGNKTREGALQMALKTLELA 332 (343)
Q Consensus 261 ~~~wriq~Vp~~~~sF---~~R~pLP~~WrGlrd--eeL~~~sGI~g~vF~H~sGFigg~~t~e~Al~mA~~al~~~ 332 (343)
+..|+|-|||++.-.+ ++=..||+.+.|+.+ ++.=+.-.++..--+-.-||.+++++.+.|++.-+.+.+..
T Consensus 175 E~D~KIIaV~~~Dp~~~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~~~y 251 (267)
T PLN02707 175 ELDWKVVAISADDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNEAW 251 (267)
T ss_pred CCCCEEEEEECCCCcccccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHHHHHH
Confidence 5689999999975434 444667888888776 33333344555555666789999999999999999999876
No 7
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=44.29 E-value=9.2 Score=30.46 Aligned_cols=12 Identities=50% Similarity=0.814 Sum_probs=11.1
Q ss_pred CCChhhhhhhcC
Q psy15810 288 GLRDDDLSSVAG 299 (343)
Q Consensus 288 GlrdeeL~~~sG 299 (343)
||++++|.++.|
T Consensus 65 ~lse~~L~~vag 76 (77)
T TIGR03793 65 ELTDEQLDAVAG 76 (77)
T ss_pred CCCHHHHHHhhC
Confidence 999999999987
No 8
>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]
Probab=42.75 E-value=7.1 Score=39.26 Aligned_cols=39 Identities=28% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCCcCCCCCccccccccccccc--ccccccccccchHHHHHH
Q psy15810 65 LRFDHHQKTFNETFASVRKEDK--FNKVKLSSAGLIYCHFGL 104 (343)
Q Consensus 65 ~rfDHHQr~F~~tf~~~r~~~~--~~~~klSSAGLIykhfG~ 104 (343)
..|||||-+ ++|-...|..+. -+.++.|.||+||.++=.
T Consensus 86 ~wiDHH~t~-~e~~~e~~~~~v~~~~D~~rcaa~vvy~~l~~ 126 (339)
T COG2404 86 KWIDHHKTA-NETKEEVREAGVSVYVDDSRCAAGVVYEYLKP 126 (339)
T ss_pred EEecccccc-chhHHHhhhcCcEEEECCcchhhhhhhheecc
Confidence 479999987 444323332222 356788999999988654
No 9
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=38.50 E-value=41 Score=34.67 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=11.7
Q ss_pred ccccccEEEecCCc
Q psy15810 46 ELDKLDLVLDVGGE 59 (343)
Q Consensus 46 ~l~~~diVvDVGg~ 59 (343)
.|.+||+|++.||-
T Consensus 114 ~l~~aDlvI~gGG~ 127 (426)
T PRK10017 114 LLSGYDAIIQVGGS 127 (426)
T ss_pred HHHhCCEEEECCCC
Confidence 37789999999994
No 10
>PRK15008 HTH-type transcriptional regulator RutR; Provisional
Probab=36.69 E-value=26 Score=31.65 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=23.6
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhccc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGID 138 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDaiD 138 (343)
|.|.||.|||.. ++.+..+...+.+.+.+.+++..
T Consensus 51 s~gtiY~hF~sK----------e~L~~a~~~~~~~~~~~~~~~~~ 85 (212)
T PRK15008 51 SKTNLLYYFPSK----------EALYIAVLRQILDIWLAPLKAFR 85 (212)
T ss_pred CHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 568999999844 44455666666666666666554
No 11
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=32.57 E-value=47 Score=31.53 Aligned_cols=38 Identities=37% Similarity=0.486 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhCCCCeEE-eecCccc---------------------cccccEEEecCC
Q psy15810 21 DEVLGCSMLKLLYPDAEII-RTRDQKE---------------------LDKLDLVLDVGG 58 (343)
Q Consensus 21 DEvlA~~lL~~ly~~a~Iv-RTRD~~~---------------------l~~~diVvDVGg 58 (343)
||++.-++|+.+-++++++ =++||+. +.+||+|+-.||
T Consensus 14 De~~l~~~l~~l~~~~~~~v~s~~p~~~~~~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG 73 (298)
T TIGR03609 14 DEALLAALLRELPPGVEPTVLSNDPAETAKLYGVEAVNRRSLLAVLRALRRADVVIWGGG 73 (298)
T ss_pred hHHHHHHHHHhcCCCCeEEEecCChHHHHhhcCceEEccCCHHHHHHHHHHCCEEEECCc
Confidence 9999999999886766554 4666532 568999998888
No 12
>PHA02094 hypothetical protein
Probab=31.47 E-value=44 Score=26.40 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=24.7
Q ss_pred chHHHHHHHH-----------HHHhCCCch-hhhHHHHHHHHHHHHhhhhhcc
Q psy15810 97 LIYCHFGLDI-----------LKKLSPIQE-EYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 97 LIykhfG~~i-----------i~~~~~~~~-~~~~~~l~~kvy~~fI~~IDai 137 (343)
+||.|||++- |++.|+... =+.+..-|+.-|+.|+.+|-+.
T Consensus 1 miyeh~~~~sfwgs~~~~~m~~~n~l~~t~~l~~~~~k~n~~ye~~~ksig~m 53 (81)
T PHA02094 1 MIYEHFDKNSFWGSILIDGMKLNNKLSNTIMLPSTRKKLNEKYEFFAKSVGAM 53 (81)
T ss_pred CchhhcCccchhHHHHHHHHHHHHhccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888762 223333222 2234444778899999988554
No 13
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=28.81 E-value=26 Score=29.12 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=17.1
Q ss_pred cEEEecCCcccCCCCCCcCCCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQKT 73 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQr~ 73 (343)
.+++|+|+.|||.+++|-=...|
T Consensus 23 ~v~~N~g~~yn~~tG~Ftap~~G 45 (127)
T PF00386_consen 23 KVLTNIGNAYNPSTGIFTAPVPG 45 (127)
T ss_dssp EEEEETTS-EETTTTEEE-SS-E
T ss_pred EEEEcCCCccEeecCEEecCCCC
Confidence 47899999999999988766655
No 14
>PF10949 DUF2777: Protein of unknown function (DUF2777); InterPro: IPR024488 This family of proteins with unknown function appears to be restricted to Bacillaceae.
Probab=25.36 E-value=22 Score=32.92 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=30.5
Q ss_pred EEeCC-CCCCcCCcccchhhcCCCh----hhhhhhc--------CCCCcEEeecCCcc-cccCCHH
Q psy15810 268 AVSLT-EKSFVLRTPLYKTWMGLRD----DDLSSVA--------GIPDCIFAHANGFI-GGNKTRE 319 (343)
Q Consensus 268 ~Vp~~-~~sF~~R~pLP~~WrGlrd----eeL~~~s--------GI~g~vF~H~sGFi-gg~~t~e 319 (343)
.+|++ ..+---||+|+.+|-=|.+ +.|-... .+-||||||++.-. ...++++
T Consensus 74 ~~~L~~ge~IRi~K~l~~~y~~lL~eL~d~~f~~F~~~Ln~~gfS~yDciyCyN~LlF~~~~~~~~ 139 (185)
T PF10949_consen 74 QIPLSNGESIRIRKKLFDPYEILLNELDDEAFLHFEQTLNSLGFSHYDCIYCYNSLLFLNSEESFK 139 (185)
T ss_pred EEecCCCCEEEEeeccccHHHHHHHhcCHHHHHHHHHHHHHcCCceEEEEeEccchhccCCcCccC
Confidence 44544 3455677888877665554 3332211 67799999998643 3333333
No 15
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=24.66 E-value=46 Score=32.26 Aligned_cols=54 Identities=24% Similarity=0.528 Sum_probs=35.4
Q ss_pred ceEEecCCCcchhHHHHHHHHHHh---CCCCeEEee----------cCccccccccEEEecCCcccCCCC
Q psy15810 9 KTIGTHSGMFHCDEVLGCSMLKLL---YPDAEIIRT----------RDQKELDKLDLVLDVGGEYNPDKL 65 (343)
Q Consensus 9 ~~IgTH~G~FHaDEvlA~~lL~~l---y~~a~IvRT----------RD~~~l~~~diVvDVGg~YDp~~~ 65 (343)
+..|+|+|-|=.+|- . ++++.+ -||.-+|=- |..+.+. +-+.+-|||.||--.+
T Consensus 136 ~ivg~h~GYf~~~e~-~-~i~~~I~~s~pdil~VgmG~P~QE~wi~~~~~~~~-~~v~igVGg~fDv~sG 202 (253)
T COG1922 136 KIVGSHDGYFDPEEE-E-AIVERIAASGPDILLVGMGVPRQEIWIARNRQQLP-VAVAIGVGGSFDVFSG 202 (253)
T ss_pred eEEEecCCCCChhhH-H-HHHHHHHhcCCCEEEEeCCCchhHHHHHHhHHhcC-CceEEeccceEEEecC
Confidence 468999999999998 3 666554 344443322 2222222 5699999999996665
No 16
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=23.71 E-value=42 Score=29.06 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=19.2
Q ss_pred cEEEecCCcccCCCCCCcCCCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQKT 73 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQr~ 73 (343)
.+.+++|+.|||.+++|.=-..|
T Consensus 29 ~v~~N~g~~yd~~TG~Ftcpv~G 51 (135)
T smart00110 29 KVLYNQQGHYDPRTGKFTCPVPG 51 (135)
T ss_pred EEEECCCCCccCCCCEEECeece
Confidence 36679999999999999876655
No 17
>KOG2408|consensus
Probab=23.62 E-value=78 Score=35.08 Aligned_cols=39 Identities=28% Similarity=0.614 Sum_probs=30.0
Q ss_pred hhhhhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy15810 156 LGARVSRLNPKWNDTKTVDEMELFKKAMAITLEEFQDRIDYYCTQWWP 203 (343)
Q Consensus 156 ls~~V~~lNP~w~~~~~~~~de~F~~A~~l~~~ef~~~v~~~~~~~lp 203 (343)
|...+..+||.|++ +.-|++|-++++.+ ...+. ++.|||
T Consensus 398 iA~~Lk~~np~W~d------E~lfQeaRkI~~A~-~q~It--y~e~LP 436 (719)
T KOG2408|consen 398 IATELKALNPHWSD------ERLFQEARKIVGAQ-VQHIT--YNEYLP 436 (719)
T ss_pred HHHHHHhhCCCCcH------HHHHHHHHHHHHHH-Hhhhh--HHhhhh
Confidence 56778899999976 45599999999965 55564 367777
No 18
>PF04369 Lactococcin: Lactococcin-like family; InterPro: IPR007464 Bacteriocins are produced by bacteria to inhibit the growth of similar or closely related bacterial strains. The class II bacteriocins are small heat-stable proteins for which disulphide bonds are the only modification to the peptide. Lactococcin A and B are class-IId bacteriocins (one-peptide non-pediocin-like bacteriocin) [, ].; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=22.84 E-value=63 Score=24.82 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=19.2
Q ss_pred cCCChhhhhhhcCCCCcEEeecCCccc
Q psy15810 287 MGLRDDDLSSVAGIPDCIFAHANGFIG 313 (343)
Q Consensus 287 rGlrdeeL~~~sGI~g~vF~H~sGFig 313 (343)
.=|+||||+++.| -+--|+-++|+-.
T Consensus 8 ~~~sdeeL~~i~G-G~l~~iqs~g~g~ 33 (60)
T PF04369_consen 8 NILSDEELSKING-GGLPYIQSNGPGH 33 (60)
T ss_pred eecCHHHHhhccC-CcceeeeecCcce
Confidence 4589999999987 5557777666543
No 19
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=21.84 E-value=1.2e+02 Score=23.51 Aligned_cols=19 Identities=42% Similarity=0.393 Sum_probs=17.2
Q ss_pred ccCCHHHHHHHHHHHHHHh
Q psy15810 314 GNKTREGALQMALKTLELA 332 (343)
Q Consensus 314 g~~t~e~Al~mA~~al~~~ 332 (343)
-.+|+|.|+++++.|++..
T Consensus 29 ~G~T~eea~~n~~eai~l~ 47 (73)
T COG1598 29 QGETLEEALQNAKEAIELH 47 (73)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 5699999999999999876
Done!