Query psy15810
Match_columns 343
No_of_seqs 112 out of 352
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:56:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wjn_C Photosynthetic reaction 42.0 15 0.00051 35.5 3.1 46 287-332 63-118 (336)
2 3ox7_P MH027; urokinase-type p 39.8 7.1 0.00024 23.0 0.3 11 285-295 9-19 (23)
3 2yzt_A Putative uncharacterize 39.0 17 0.00059 26.4 2.4 21 312-332 27-47 (67)
4 3loc_A HTH-type transcriptiona 37.4 16 0.00056 29.8 2.3 35 94-138 51-85 (212)
5 4f3j_A Complement C1Q tumor ne 36.5 10 0.00034 31.6 0.8 21 51-71 26-46 (148)
6 1pb6_A Hypothetical transcript 35.6 17 0.00058 29.8 2.1 37 94-140 51-87 (212)
7 3s0r_A De novo designed helica 34.0 34 0.0012 21.3 2.7 16 318-333 3-18 (30)
8 1eys_C Photosynthetic reaction 33.5 28 0.00094 34.2 3.5 51 281-332 195-258 (382)
9 2wjn_C Photosynthetic reaction 32.1 18 0.00063 34.9 1.9 47 285-332 219-278 (336)
10 3kwr_A Putative RNA-binding pr 30.0 31 0.0011 27.3 2.7 20 313-332 34-53 (97)
11 3on4_A Transcriptional regulat 29.3 21 0.00071 28.6 1.6 34 94-137 43-76 (191)
12 2wnv_C C1Q chain C, complement 28.5 16 0.00056 29.8 0.8 23 51-73 28-50 (131)
13 2dsy_A Hypothetical protein TT 26.9 42 0.0014 25.7 2.9 25 300-332 36-60 (87)
14 2wnv_A C1Q chain A, complement 26.8 18 0.00063 29.6 0.8 23 51-73 24-46 (134)
15 2wnv_B C1Q chain B, complement 26.1 19 0.00066 29.6 0.8 23 51-73 27-49 (136)
16 3gzi_A Transcriptional regulat 26.0 28 0.00096 28.6 1.9 36 94-139 50-85 (218)
17 3rh2_A Hypothetical TETR-like 24.5 40 0.0014 27.8 2.6 34 94-137 36-69 (212)
18 2hyt_A TETR-family transcripti 24.4 39 0.0013 27.7 2.4 33 94-136 45-77 (197)
19 2qtq_A Transcriptional regulat 24.2 35 0.0012 27.8 2.1 35 94-138 49-83 (213)
20 3jsj_A Putative TETR-family tr 24.2 35 0.0012 27.5 2.1 34 94-137 41-74 (190)
21 3pas_A TETR family transcripti 24.2 29 0.001 27.7 1.6 32 94-135 41-72 (195)
22 2fd5_A Transcriptional regulat 23.9 42 0.0014 26.8 2.5 34 94-137 40-73 (180)
23 1d2v_C Myeloperoxidase; heme-p 23.9 46 0.0016 33.2 3.3 41 156-205 148-188 (466)
24 3e7q_A Transcriptional regulat 23.9 31 0.001 28.1 1.7 33 94-136 47-79 (215)
25 3frq_A Repressor protein MPHR( 23.3 41 0.0014 27.3 2.4 33 94-136 41-73 (195)
26 3q9k_A Lactoperoxidase, LPO; b 23.0 47 0.0016 34.4 3.2 40 156-204 276-315 (595)
27 3crj_A Transcription regulator 22.6 33 0.0011 28.3 1.7 34 94-137 47-80 (199)
28 2gfn_A HTH-type transcriptiona 22.6 34 0.0012 28.6 1.8 33 94-136 42-74 (209)
29 2np5_A Transcriptional regulat 22.3 37 0.0013 28.1 1.9 34 94-137 42-75 (203)
30 3f0c_A TETR-molecule A, transc 22.2 33 0.0011 28.1 1.6 33 94-136 44-76 (216)
31 2nx4_A Transcriptional regulat 22.1 33 0.0011 28.1 1.6 34 94-137 43-76 (194)
32 4hku_A LMO2814 protein, TETR t 22.0 39 0.0013 27.4 2.0 33 94-136 40-72 (178)
33 3bru_A Regulatory protein, TET 21.7 34 0.0012 28.2 1.6 34 94-137 63-96 (222)
34 2d6y_A Putative TETR family re 21.3 44 0.0015 27.7 2.2 31 94-134 41-71 (202)
35 3nrg_A TETR family transcripti 21.1 43 0.0015 27.4 2.1 34 94-137 46-79 (217)
36 3aqt_A Bacterial regulatory pr 20.9 46 0.0016 28.5 2.3 33 94-136 79-111 (245)
37 3f1b_A TETR-like transcription 20.8 44 0.0015 26.9 2.1 32 94-135 47-78 (203)
38 2rek_A Putative TETR-family tr 20.7 35 0.0012 27.8 1.4 12 94-105 48-59 (199)
39 3kz9_A SMCR; transcriptional r 20.7 41 0.0014 27.1 1.8 33 94-136 50-82 (206)
40 2v57_A TETR family transcripti 20.6 38 0.0013 27.2 1.6 33 94-136 45-77 (190)
41 3kkd_A Transcriptional regulat 20.3 46 0.0016 28.1 2.1 31 94-134 68-98 (237)
42 2qwt_A Transcriptional regulat 20.3 38 0.0013 27.8 1.6 32 94-135 45-76 (196)
43 2ka3_A Emilin-1; C1Q-like doma 20.2 31 0.0011 29.4 1.0 37 37-73 20-59 (162)
44 2gen_A Probable transcriptiona 20.2 40 0.0014 27.7 1.7 32 94-135 40-71 (197)
45 2g7s_A Transcriptional regulat 20.1 39 0.0013 26.9 1.6 33 94-136 41-73 (194)
46 3knw_A Putative transcriptiona 20.1 39 0.0013 27.5 1.6 34 94-137 47-80 (212)
47 3qbm_A TETR transcriptional re 20.0 32 0.0011 27.6 1.0 33 94-136 40-72 (199)
48 3him_A Probable transcriptiona 20.0 43 0.0015 27.1 1.8 33 94-136 49-81 (211)
No 1
>2wjn_C Photosynthetic reaction center cytochrome C subun; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_C* 1r2c_C* 1dxr_C* 2prc_C* 2i5n_C* 2wjm_C* 2x5u_C* 2x5v_C* 3d38_C* 3g7f_C* 3prc_C* 4ac5_C* 5prc_C* 6prc_C* 7prc_C* 3t6e_C* 2jbl_C* 1vrn_C* 3t6d_C*
Probab=42.05 E-value=15 Score=35.50 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=31.8
Q ss_pred cCCChhhhhh--------hcCCCCcEEeecCCcccccCC--HHHHHHHHHHHHHHh
Q psy15810 287 MGLRDDDLSS--------VAGIPDCIFAHANGFIGGNKT--REGALQMALKTLELA 332 (343)
Q Consensus 287 rGlrdeeL~~--------~sGI~g~vF~H~sGFigg~~t--~e~Al~mA~~al~~~ 332 (343)
.+|..+|+.+ ++.-.||.|||+++=.+.... +.-|-.|-+++...+
T Consensus 63 ~dls~~ef~rlM~amt~Wvs~~~gCtyCHn~~~Faddd~~tk~vAr~mI~Mt~~IN 118 (336)
T 2wjn_C 63 GNLTEAEFLRTMTAITEWVSPQEGCTYCHDENNLASEAKYPYVVARRMLEMTRAIN 118 (336)
T ss_dssp TTSBHHHHHHHHHHHHHHHCTTTGGGGTSBTTBTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCcccccCcccccccchhHHHHHHHHHHHHHHHH
Confidence 6788888876 556689999999987776654 444545555554443
No 2
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=39.81 E-value=7.1 Score=23.03 Aligned_cols=11 Identities=27% Similarity=0.915 Sum_probs=8.3
Q ss_pred hhcCCChhhhh
Q psy15810 285 TWMGLRDDDLS 295 (343)
Q Consensus 285 ~WrGlrdeeL~ 295 (343)
+||||.+-.+.
T Consensus 9 swrglenhamc 19 (23)
T 3ox7_P 9 SWRGLENHAMC 19 (26)
T ss_pred ccccchhhccc
Confidence 69999886543
No 3
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=39.01 E-value=17 Score=26.41 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=18.5
Q ss_pred ccccCCHHHHHHHHHHHHHHh
Q psy15810 312 IGGNKTREGALQMALKTLELA 332 (343)
Q Consensus 312 igg~~t~e~Al~mA~~al~~~ 332 (343)
+.-.+|.|.|++||+.||+..
T Consensus 27 ~t~G~T~eEa~~~~~eAi~~~ 47 (67)
T 2yzt_A 27 HTQAQSFEELLRRLQEAIAVS 47 (67)
T ss_dssp EEEESSHHHHHHHHHHHHHHH
T ss_pred ceeeCCHHHHHHHHHHHHHHH
Confidence 456799999999999999876
No 4
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=37.43 E-value=16 Score=29.83 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=22.8
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhccc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGID 138 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDaiD 138 (343)
|-|.||+||+.. ++.+..++..+.+.+...++++.
T Consensus 51 s~~tlY~~F~sK----------e~L~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 3loc_A 51 SKTNLLYYFPSK----------EALYIAVLRQILDIWLAPLKAFR 85 (212)
T ss_dssp CHHHHHHHSSSH----------HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHhhhCCCH----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999843 34455566666666666666554
No 5
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=36.46 E-value=10 Score=31.65 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=17.1
Q ss_pred cEEEecCCcccCCCCCCcCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQ 71 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQ 71 (343)
.+++|+|+-||+++++|==--
T Consensus 26 ~v~~N~G~~yn~sTG~FTaPv 46 (148)
T 4f3j_A 26 RVLVNEQGHYDAVTGKFTCQV 46 (148)
T ss_dssp EEEECTTCCEETTTTEEECCS
T ss_pred eEEECCCCCccCCCCeEECCc
Confidence 578999999999999865433
No 6
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=35.61 E-value=17 Score=29.79 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=25.1
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcccCC
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGIDNG 140 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDaiDNG 140 (343)
|-|.+|+||+.. ++.+..++....+.+...++.+..+
T Consensus 51 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~~~~~ 87 (212)
T 1pb6_A 51 SKTNLLYYFPSK----------EALYIAVLRQILDIWLAPLKAFRED 87 (212)
T ss_dssp CHHHHHHHSSSH----------HHHHHHHHHHHHHHHTHHHHHCCTT
T ss_pred ChhHHHHhCCCH----------HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 568999999844 4556666667777777776654433
No 7
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=34.05 E-value=34 Score=21.28 Aligned_cols=16 Identities=44% Similarity=0.497 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhh
Q psy15810 318 REGALQMALKTLELAE 333 (343)
Q Consensus 318 ~e~Al~mA~~al~~~~ 333 (343)
-|+||+.|+++|+.+.
T Consensus 3 aesaleyaqqalekaq 18 (30)
T 3s0r_A 3 AESALEYAQQALEKAQ 18 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHH
Confidence 4789999999998763
No 8
>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2
Probab=33.51 E-value=28 Score=34.18 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=35.8
Q ss_pred ccch-hhcCCChhhh--------hhhcCCCCcEEeecCCcccccC----CHHHHHHHHHHHHHHh
Q psy15810 281 PLYK-TWMGLRDDDL--------SSVAGIPDCIFAHANGFIGGNK----TREGALQMALKTLELA 332 (343)
Q Consensus 281 pLP~-~WrGlrdeeL--------~~~sGI~g~vF~H~sGFigg~~----t~e~Al~mA~~al~~~ 332 (343)
.||. .+..+.+.|+ +...|+ +|+|||+++=.+.+. .++.|.-|-+++.+.+
T Consensus 195 aLP~~~~~siqqaE~Ty~LM~h~S~sLGV-nCtyCHNsRaF~~w~qstPqr~tA~~girMvr~iN 258 (382)
T 1eys_C 195 ALAGSNPASLKQAEWTFGLMMNISDSLGV-GCTSCHNTRAFNDWTQSTPKRTTAWYAIRHVRDIN 258 (382)
T ss_dssp SBSSSCCCCHHHHHHHHHHHHHHHHHHTC-CGGGTCCTTCTTCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHhcCC-CcccccCccccCcccccchHHHHHHHHHHHHHHHH
Confidence 3664 2444555555 667784 899999999877743 3777888888887775
No 9
>2wjn_C Photosynthetic reaction center cytochrome C subun; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_C* 1r2c_C* 1dxr_C* 2prc_C* 2i5n_C* 2wjm_C* 2x5u_C* 2x5v_C* 3d38_C* 3g7f_C* 3prc_C* 4ac5_C* 5prc_C* 6prc_C* 7prc_C* 3t6e_C* 2jbl_C* 1vrn_C* 3t6d_C*
Probab=32.06 E-value=18 Score=34.87 Aligned_cols=47 Identities=23% Similarity=0.202 Sum_probs=31.7
Q ss_pred hhcCCChhh--------hhhhcCCCCcEEeecCCccccc-C----CHHHHHHHHHHHHHHh
Q psy15810 285 TWMGLRDDD--------LSSVAGIPDCIFAHANGFIGGN-K----TREGALQMALKTLELA 332 (343)
Q Consensus 285 ~WrGlrdee--------L~~~sGI~g~vF~H~sGFigg~-~----t~e~Al~mA~~al~~~ 332 (343)
.+..+.+.| ++...|+ +|+|||+|+=...+ + .+..|.-.-+++.+..
T Consensus 219 ~~~si~qaE~ty~LM~h~S~sLGV-nCt~CHNsRaF~~w~~qstPqr~~aw~girMvr~lN 278 (336)
T 2wjn_C 219 ERRPLSDAYATFALMMSISDSLGT-NCTFCHNAQTFESWGKKSTPQRAIAWWGIRMVRDLN 278 (336)
T ss_dssp GSCCTHHHHHHHHHHHHHHHHHTC-CGGGTBCGGGTTCCBTTBCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhhcCC-CcccccCccccccccccCChhHHHHHHHHHHHHHHH
Confidence 455666644 4677784 89999999999888 2 3556555555555554
No 10
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=29.99 E-value=31 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=17.9
Q ss_pred cccCCHHHHHHHHHHHHHHh
Q psy15810 313 GGNKTREGALQMALKTLELA 332 (343)
Q Consensus 313 gg~~t~e~Al~mA~~al~~~ 332 (343)
...+|.|.|++||+.||+..
T Consensus 34 T~GdT~eEAl~nA~EAL~~~ 53 (97)
T 3kwr_A 34 TFGASVQVAADNAANALAIA 53 (97)
T ss_dssp EEESSHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHHH
Confidence 46799999999999999875
No 11
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=29.26 E-value=21 Score=28.63 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=23.3
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDai 137 (343)
|-|.+|+||+.. ++.+..++..+.+.+.+.++..
T Consensus 43 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~~ 76 (191)
T 3on4_A 43 KTASIHYHFPSK----------EDLGVAVISWHTDKIAAVLSDI 76 (191)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhcCCCH----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 468999999844 4455666666666676666654
No 12
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=28.48 E-value=16 Score=29.81 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=19.0
Q ss_pred cEEEecCCcccCCCCCCcCCCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQKT 73 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQr~ 73 (343)
.+++++|+.|||.+++|==...|
T Consensus 28 ~v~~N~G~~yn~~TG~Ftap~~G 50 (131)
T 2wnv_C 28 AVLTNPQGDYDTSTGKFTCKVPG 50 (131)
T ss_dssp EEEECTTCCEETTTTEEECSSCE
T ss_pred eEEECCCCCccCCCCEEEcccCC
Confidence 58899999999999987655544
No 13
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=26.87 E-value=42 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=20.7
Q ss_pred CCCcEEeecCCcccccCCHHHHHHHHHHHHHHh
Q psy15810 300 IPDCIFAHANGFIGGNKTREGALQMALKTLELA 332 (343)
Q Consensus 300 I~g~vF~H~sGFigg~~t~e~Al~mA~~al~~~ 332 (343)
+|||+ ...+|.|.|++||+.||+..
T Consensus 36 lpgc~--------t~G~T~eEA~~~a~eAl~~~ 60 (87)
T 2dsy_A 36 LPGVW--------ATGKSLKECEANLQAALEDW 60 (87)
T ss_dssp STTCE--------EEESSHHHHHHHHHHHHHHH
T ss_pred CCCee--------EeeCCHHHHHHHHHHHHHHH
Confidence 57764 44799999999999999875
No 14
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=26.77 E-value=18 Score=29.59 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=18.8
Q ss_pred cEEEecCCcccCCCCCCcCCCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQKT 73 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQr~ 73 (343)
.+++++|+-|||.+++|==...|
T Consensus 24 ~v~~N~G~~yn~~TG~Ftap~~G 46 (134)
T 2wnv_A 24 TVITNQEEPYQNHSGRFVCTVPG 46 (134)
T ss_dssp EEEEEETSCEETTTTEEECCSCE
T ss_pred EEEECCCCCccCCCCEEECeeCC
Confidence 58899999999999987655544
No 15
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=26.10 E-value=19 Score=29.65 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=18.8
Q ss_pred cEEEecCCcccCCCCCCcCCCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQKT 73 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQr~ 73 (343)
.+++++|+.|||.+++|==...|
T Consensus 27 ~v~~N~G~~yn~~TG~Ftap~~G 49 (136)
T 2wnv_B 27 HVITNMNNNYEPRSGKFTCKVPG 49 (136)
T ss_dssp EEEEEETSCEETTTTEEECSSCE
T ss_pred eEEECCCCcccCCCCEEECCcCe
Confidence 58899999999999987655544
No 16
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=25.99 E-value=28 Score=28.64 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=22.1
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcccC
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGIDN 139 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDaiDN 139 (343)
|-|.||+||+.. ++.+..++......+.+.++....
T Consensus 50 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~~~~ 85 (218)
T 3gzi_A 50 DPGLIRYYFGSK----------EKLFSTMIHETAMPVLAQLHKARR 85 (218)
T ss_dssp CTHHHHHHHSSH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999843 344555555555666555554443
No 17
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=24.54 E-value=40 Score=27.75 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=24.7
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDai 137 (343)
|-|.+|+||+.. ++.+..++..+.+.+...++..
T Consensus 36 s~~t~Y~~F~sK----------~~L~~a~~~~~~~~~~~~~~~~ 69 (212)
T 3rh2_A 36 SPGNLYYHFRNK----------EDIIRCIFDQYEQHLLLGFKPY 69 (212)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 458899999844 4556667777777777777665
No 18
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=24.40 E-value=39 Score=27.73 Aligned_cols=33 Identities=18% Similarity=0.461 Sum_probs=19.7
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|-+|.||+.. ++.+..++....+.+.+.++.
T Consensus 45 s~~tlY~~F~sK----------e~L~~av~~~~~~~~~~~~~~ 77 (197)
T 2hyt_A 45 TRGALYHHFGDK----------KGLLAAVVEQIDAEMDERLQA 77 (197)
T ss_dssp CTTHHHHHHSSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 468999999843 334444555555555555443
No 19
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=24.23 E-value=35 Score=27.77 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=23.3
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhccc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGID 138 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDaiD 138 (343)
|-|.+|+||+.. ++.+..++..+.+.+.+.++...
T Consensus 49 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~~~ 83 (213)
T 2qtq_A 49 NSALVKYYFGNK----------AGLLKALLDRDMENIVKSVDALL 83 (213)
T ss_dssp CHHHHHHHHSSH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHhHhcCCH----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999844 44556666666666666665443
No 20
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=24.21 E-value=35 Score=27.53 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=21.6
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDai 137 (343)
|-|.||+||+.. ++.+..++....+.+...++..
T Consensus 41 s~~tly~~F~sK----------~~L~~~~~~~~~~~~~~~~~~~ 74 (190)
T 3jsj_A 41 SKRSMYQLFESK----------DELLAASLKERSAAFVAKALPP 74 (190)
T ss_dssp CHHHHHHHCSCH----------HHHHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999844 3445555666666666665443
No 21
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=24.15 E-value=29 Score=27.74 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=19.1
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVD 135 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ID 135 (343)
|-|.+|+||+.. ++.+..++..+...+.+.++
T Consensus 41 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~ 72 (195)
T 3pas_A 41 SPATLYIYYEDK----------EQLLLATFYYVSDQVIDAAL 72 (195)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 468899999843 33444555555555554443
No 22
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=23.94 E-value=42 Score=26.84 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=21.1
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDai 137 (343)
|-|.+|+|||.. ++.+..++....+.+...++..
T Consensus 40 s~~tly~~F~sK----------~~L~~a~~~~~~~~~~~~~~~~ 73 (180)
T 2fd5_A 40 TVGGFYAHFQSK----------DALMLEAFEQLLGKRRELLGEL 73 (180)
T ss_dssp CGGGGGGTCSCH----------HHHHHHHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHCCCH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999843 3445555555555555555544
No 23
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=23.93 E-value=46 Score=33.20 Aligned_cols=41 Identities=24% Similarity=0.480 Sum_probs=31.0
Q ss_pred hhhhhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccccH
Q psy15810 156 LGARVSRLNPKWNDTKTVDEMELFKKAMAITLEEFQDRIDYYCTQWWPAR 205 (343)
Q Consensus 156 ls~~V~~lNP~w~~~~~~~~de~F~~A~~l~~~ef~~~v~~~~~~~lpAr 205 (343)
+...+..+||.|++ ++-|++|=.++..+ ...|. +.-|||+-
T Consensus 148 ia~~L~~~nP~W~D------E~LFqeAR~Iv~a~-~Q~I~--~~EyLp~i 188 (466)
T 1d2v_C 148 LATELKSLNPRWDG------ERLYQEARKIVGAM-VQIIT--YRDYLPLV 188 (466)
T ss_dssp HHHHHHHHCTTCCH------HHHHHHHHHHHHHH-HHHHH--HHTTHHHH
T ss_pred HHHHHHHhCCCCCh------HHHHHHHHHHHHHH-HHHHh--HHHHHHHH
Confidence 56778899999964 66799999999864 55554 47888853
No 24
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=23.91 E-value=31 Score=28.09 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=20.8
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+|||.. ++.+..++..+.+.+.+.++.
T Consensus 47 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~ 79 (215)
T 3e7q_A 47 SVGLINHHYDGK----------DALVAEAYLAVTGRVMRLLRG 79 (215)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999844 344555555556666555544
No 25
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=23.33 E-value=41 Score=27.28 Aligned_cols=33 Identities=9% Similarity=0.227 Sum_probs=22.2
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+||+.. ++.+..++....+.+.+.++.
T Consensus 41 s~~t~Y~~F~sK----------~~L~~a~~~~~~~~~~~~~~~ 73 (195)
T 3frq_A 41 SRAALIQRFTNR----------DTLLVRMMERGVEQVRHYLNA 73 (195)
T ss_dssp CHHHHHHHHCSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999844 444556666666666666655
No 26
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=22.99 E-value=47 Score=34.36 Aligned_cols=40 Identities=28% Similarity=0.496 Sum_probs=30.2
Q ss_pred hhhhhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy15810 156 LGARVSRLNPKWNDTKTVDEMELFKKAMAITLEEFQDRIDYYCTQWWPA 204 (343)
Q Consensus 156 ls~~V~~lNP~w~~~~~~~~de~F~~A~~l~~~ef~~~v~~~~~~~lpA 204 (343)
+...++.+||.|++ ++-|++|=.+++.+ ++.|. +..|+|.
T Consensus 276 ia~~L~~~nP~W~d------E~LfQeAR~Iv~A~-~Q~It--y~E~LP~ 315 (595)
T 3q9k_A 276 LARELKKLNPHWNG------EKLYQEARKILGAF-IQIIT--FRDYLPI 315 (595)
T ss_dssp HHHHHHHHCTTCCH------HHHHHHHHHHHHHH-HHHHH--HHTHHHH
T ss_pred HHHHHHhhCCCCCH------HHHHHHHHHHHHHH-eeeee--HHHHHHH
Confidence 56778899999955 56799999999865 55554 4678874
No 27
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=22.65 E-value=33 Score=28.33 Aligned_cols=34 Identities=9% Similarity=0.337 Sum_probs=21.9
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDai 137 (343)
|-|.||+||+.. ++.+..+++.+.+.+...++..
T Consensus 47 sk~tlY~yF~sK----------e~L~~a~~~~~~~~~~~~~~~~ 80 (199)
T 3crj_A 47 STAAVHYYYDTK----------DDLLAAFLDYLLERFVDSIHDV 80 (199)
T ss_dssp CHHHHHTTCSSH----------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred ChhHHhhhcCCH----------HHHHHHHHHHHHHHHHHHHhhc
Confidence 458899999843 3445556666666666666543
No 28
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.59 E-value=34 Score=28.60 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=20.1
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.||.||+.. ++.+..++....+.+.+.++.
T Consensus 42 s~gtlY~yF~sK----------e~L~~a~~~~~~~~~~~~~~~ 74 (209)
T 2gfn_A 42 STGVLNHYFGSR----------HELLLAALRRAGDIQGDRYRT 74 (209)
T ss_dssp CHHHHHHHTSSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhcCCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 568999999943 344455555555555555543
No 29
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.28 E-value=37 Score=28.07 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=21.4
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDai 137 (343)
|-|.||+||+.. ++.+..++....+.+.+.++..
T Consensus 42 s~gtlY~~F~sK----------e~L~~a~~~~~~~~~~~~~~~~ 75 (203)
T 2np5_A 42 SIGAVQHHFSTK----------DEMFAFALRTLVDKLLARLSEV 75 (203)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999843 3445555556666666555543
No 30
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=22.18 E-value=33 Score=28.15 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=20.0
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+||+.. ++.+..++....+.+...++.
T Consensus 44 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~ 76 (216)
T 3f0c_A 44 GKASLYYYFPDK----------ETLFEAVIKKEQNVFFDEMDK 76 (216)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 468999999843 334455555555555555544
No 31
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=22.08 E-value=33 Score=28.13 Aligned_cols=34 Identities=9% Similarity=0.207 Sum_probs=20.4
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDai 137 (343)
|-|.+|.||+.. ++.+..++..+.+.+...+...
T Consensus 43 s~gtlY~yF~sK----------e~L~~a~~~~~~~~~~~~~~~~ 76 (194)
T 2nx4_A 43 TNGALSHYFAGK----------DEILRTSYEHISEATDRRIAEA 76 (194)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHhCcCH----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999843 3444555555555555554443
No 32
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=21.96 E-value=39 Score=27.42 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=21.6
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+||+.+ ++.+..++....+.+...+.+
T Consensus 40 s~~tlY~~F~sK----------e~L~~a~~~~~~~~~~~~~~~ 72 (178)
T 4hku_A 40 THAALYKHYRNK----------EDLFQKLALRWLEETSREIFA 72 (178)
T ss_dssp CGGGGGGTCSSH----------HHHHHHHHHHHHHHHTHHHHH
T ss_pred CHhHHHHHCCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999844 444556666666666665544
No 33
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=21.72 E-value=34 Score=28.19 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=19.6
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDai 137 (343)
|-|.+|+||+.. ++.+..++..+.+.+...++..
T Consensus 63 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~~ 96 (222)
T 3bru_A 63 PKGSFYHYFRNK----------ADFGLALIEAYDTYFARLLDQA 96 (222)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhCCCH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999843 3334444555555555544443
No 34
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.30 E-value=44 Score=27.68 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=19.0
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEV 134 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~I 134 (343)
|-|.||+||+.. ++.+..++..+.+.+.+.+
T Consensus 41 s~~tiY~~F~sK----------e~L~~~v~~~~~~~~~~~~ 71 (202)
T 2d6y_A 41 NKQLIYAYYGNK----------GELFASVLEKKMLDLAISV 71 (202)
T ss_dssp CHHHHHHHHSSH----------HHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHH
Confidence 468999999843 3344555555555555544
No 35
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=21.13 E-value=43 Score=27.37 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=21.3
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDai 137 (343)
|-|.+|+||+.. ++.+..++..+.+.+.+.+...
T Consensus 46 s~~tlY~~F~sK----------~~L~~~~~~~~~~~~~~~~~~~ 79 (217)
T 3nrg_A 46 AKGSFYQYFADK----------KDCYLYLIQLGIEQKTAFLRQT 79 (217)
T ss_dssp CTTGGGGTCSSH----------HHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999843 3445555555556655555443
No 36
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=20.86 E-value=46 Score=28.50 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=20.6
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+||+.. ++.+..++..+.+.+.+.++.
T Consensus 79 s~~t~Y~~F~sK----------e~Ll~~v~~~~~~~~~~~~~~ 111 (245)
T 3aqt_A 79 GTGTFYNYFPDR----------EQLLQAVAEDAFESVGIALDQ 111 (245)
T ss_dssp CGGGGGGTCSSH----------HHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999843 344555555666666555543
No 37
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=20.84 E-value=44 Score=26.89 Aligned_cols=32 Identities=9% Similarity=0.263 Sum_probs=19.9
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVD 135 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ID 135 (343)
|-|.+|+||+.. ++.+..++..+.+.+.+.++
T Consensus 47 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~ 78 (203)
T 3f1b_A 47 SKPMLYLYYGSK----------DELFAACIQREGLRFVEALA 78 (203)
T ss_dssp CHHHHHHHCCSH----------HHHHHHHHHHHHHHHHHHHG
T ss_pred chHHHHHHhCCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 457899999843 34455555555555555554
No 38
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.75 E-value=35 Score=27.82 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=9.2
Q ss_pred cccchHHHHHHH
Q psy15810 94 SAGLIYCHFGLD 105 (343)
Q Consensus 94 SAGLIykhfG~~ 105 (343)
|-|.+|+||+..
T Consensus 48 s~~t~Y~~F~sK 59 (199)
T 2rek_A 48 GSATLHRHFPSR 59 (199)
T ss_dssp CHHHHHHHCSSH
T ss_pred chHHHHHHCCCH
Confidence 468899999833
No 39
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=20.68 E-value=41 Score=27.10 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=19.8
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+||+.. ++.+..++......+...++.
T Consensus 50 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~ 82 (206)
T 3kz9_A 50 SVATVFNYFPTR----------EDLVDEVLNHVVRQFSNFLSD 82 (206)
T ss_dssp CHHHHHHHCCSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 458899999944 334445555555555555544
No 40
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=20.56 E-value=38 Score=27.22 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=20.2
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+||+.. ++.+..++....+.+.+.++.
T Consensus 45 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~ 77 (190)
T 2v57_A 45 GRSTVHRYYPER----------TDLLRALARHVHDLSNAAIER 77 (190)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 457899999844 344555555555555555543
No 41
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=20.31 E-value=46 Score=28.07 Aligned_cols=31 Identities=6% Similarity=0.024 Sum_probs=13.9
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEV 134 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~I 134 (343)
|-|.||+|||.. ++.+..++......+...+
T Consensus 68 s~~tlY~~F~sK----------e~L~~a~~~~~~~~~~~~~ 98 (237)
T 3kkd_A 68 PLSATTYYFKDI----------DDLITDTFALFVERNAEAL 98 (237)
T ss_dssp CTTTC-----CH----------HHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHcCCH----------HHHHHHHHHHHHHHHHHHH
Confidence 468899999944 3334445555555555554
No 42
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=20.27 E-value=38 Score=27.81 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=18.9
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVD 135 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ID 135 (343)
|-|.+|+||+.. ++.+..++....+.+.+.++
T Consensus 45 s~~tlY~~F~sK----------~~L~~~~~~~~~~~~~~~~~ 76 (196)
T 2qwt_A 45 GAGTVYRHFPTK----------QALVVAVAEDRVRRIVDHAR 76 (196)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 468999999843 33444455555555544443
No 43
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=20.20 E-value=31 Score=29.42 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=24.0
Q ss_pred eEEeecCcc---ccccccEEEecCCcccCCCCCCcCCCCC
Q psy15810 37 EIIRTRDQK---ELDKLDLVLDVGGEYNPDKLRFDHHQKT 73 (343)
Q Consensus 37 ~IvRTRD~~---~l~~~diVvDVGg~YDp~~~rfDHHQr~ 73 (343)
.+.||.... .|.=-.+++++|+-|||.+++|==--.|
T Consensus 20 Sv~rt~~~~~~~~I~Fd~v~~N~G~~yn~~TG~FTaPv~G 59 (162)
T 2ka3_A 20 SAALSLPRSEPGTVPFDRVLLNDGGYYDPETGVFTAPLAG 59 (162)
T ss_dssp EEECCCCSCCSSSCCCCEEEEESSCCEETTTTEEECCCCE
T ss_pred EEEeCCCCCCCCeEEeCEEEECCCCceECCCCEEECCCCe
Confidence 455554332 3332358899999999999987544433
No 44
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=20.15 E-value=40 Score=27.68 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=18.8
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVD 135 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ID 135 (343)
|-|.+|+||+.. ++.+..++....+.+...++
T Consensus 40 s~gtlY~~F~sK----------e~L~~av~~~~~~~~~~~~~ 71 (197)
T 2gen_A 40 SIGSLYHHFGNK----------ERIHGELYLAGIGQYAALLE 71 (197)
T ss_dssp CHHHHHHHTCSH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 457899999843 33444455555555554443
No 45
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=20.14 E-value=39 Score=26.90 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=18.9
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+||+.. ++.+..++..+...+.+.++.
T Consensus 41 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~ 73 (194)
T 2g7s_A 41 RNASIHHHFPSK----------SDLVCKLVSQYRQEAEAGIAE 73 (194)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 568899999843 333444444444444444433
No 46
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=20.06 E-value=39 Score=27.52 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=20.3
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGI 137 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDai 137 (343)
|-|.+|+||+.. ++.+..++..+.+.+...++..
T Consensus 47 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3knw_A 47 PKGSFYHYFESK----------EAFGCELLKHYISDYQIRLNQL 80 (212)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999843 3344555555555555555443
No 47
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=20.04 E-value=32 Score=27.64 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=20.4
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+||+.. ++.+..++..+.+.+.+.++.
T Consensus 40 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~~~~ 72 (199)
T 3qbm_A 40 EKGGIYRHFESK----------EQLALAAFDYAAEKVRERFAV 72 (199)
T ss_dssp CHHHHHTTCSSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHhCCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 568999999844 344455555555555555543
No 48
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.03 E-value=43 Score=27.09 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=22.1
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+||+.. ++.+..++......+...++.
T Consensus 49 s~~t~Y~~F~sK----------~~Ll~~~~~~~~~~~~~~~~~ 81 (211)
T 3him_A 49 SPGAVYPHYKTK----------ESLLYAISLEGHHSVLAAITA 81 (211)
T ss_dssp CTTSSTTTCSSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcChhhhcCCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 568899999844 445566666666666666654
Done!