Query psy15810
Match_columns 343
No_of_seqs 112 out of 352
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 21:56:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15810.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15810hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fd5a1 a.4.1.9 (A:1-76) Proba 78.4 0.56 4E-05 33.0 2.5 37 94-140 40-76 (76)
2 d1pb6a1 a.4.1.9 (A:14-85) Hypo 74.4 0.59 4.3E-05 32.8 1.7 35 94-138 37-71 (72)
3 d2np5a1 a.4.1.9 (A:9-77) Trans 64.6 1.5 0.00011 30.1 2.0 35 94-138 34-68 (69)
4 d2oi8a1 a.4.1.9 (A:8-86) Putat 54.1 2 0.00014 30.2 1.1 32 94-135 42-73 (79)
5 d2g7sa1 a.4.1.9 (A:3-76) Putat 53.6 1.7 0.00012 30.3 0.6 36 94-139 37-72 (74)
6 d1pk6c_ b.22.1.1 (C:) Compleme 49.2 2.3 0.00017 32.5 0.8 23 51-73 26-48 (129)
7 d1vi0a1 a.4.1.9 (A:6-77) Hypot 46.4 4.2 0.00031 27.8 1.8 32 94-135 34-65 (72)
8 d1v7ba1 a.4.1.9 (A:1-74) Trans 45.3 4.5 0.00033 27.8 1.9 35 94-138 37-71 (74)
9 d2id6a1 a.4.1.9 (A:1-75) Trans 42.4 6.9 0.0005 26.9 2.5 12 94-105 36-47 (75)
10 d1pk6b_ b.22.1.1 (B:) Compleme 41.6 3.5 0.00026 31.3 0.8 23 51-73 26-48 (132)
11 d1t33a1 a.4.1.9 (A:1-88) Putat 41.0 6.5 0.00047 27.9 2.2 11 94-104 44-54 (88)
12 d1pk6a_ b.22.1.1 (A:) Compleme 40.8 3.7 0.00027 31.1 0.8 22 51-72 24-45 (133)
13 d1o91a_ b.22.1.1 (A:) Collagen 39.4 3.9 0.00029 31.2 0.8 23 51-73 24-46 (131)
14 d2hyja1 a.4.1.9 (A:8-82) Putat 37.8 5.4 0.0004 27.5 1.3 31 94-134 38-68 (75)
15 d2gfna1 a.4.1.9 (A:4-80) Proba 37.2 6.8 0.0005 27.0 1.8 33 94-136 39-71 (77)
16 d2d6ya1 a.4.1.9 (A:7-74) Putat 36.8 8.3 0.0006 26.2 2.1 31 94-134 35-65 (68)
17 d2fbqa1 a.4.1.9 (A:2-80) Trans 35.9 7.2 0.00052 27.0 1.7 32 94-135 37-68 (79)
18 d2o7ta1 a.4.1.9 (A:1-78) Trans 34.9 4.5 0.00033 28.3 0.4 31 94-134 40-70 (78)
19 d1z0xa1 a.4.1.9 (A:4-71) Trans 34.5 3.5 0.00025 28.2 -0.3 30 94-133 36-65 (68)
20 d1gr3a_ b.22.1.1 (A:) Collagen 33.9 5.6 0.0004 30.1 0.8 20 51-70 25-44 (132)
21 d2abwa1 c.23.16.1 (A:2-219) Py 33.8 8.5 0.00062 31.1 2.1 45 10-58 4-51 (218)
22 d1c3ha_ b.22.1.1 (A:) 30 kDa a 31.6 6.4 0.00046 30.3 0.8 21 51-71 27-47 (137)
23 d1t56a1 a.4.1.9 (A:22-94) Ethr 31.0 9.3 0.00067 25.9 1.6 12 94-105 36-47 (73)
24 d2gena1 a.4.1.9 (A:6-75) Proba 30.7 10 0.00076 25.4 1.8 32 94-135 33-64 (70)
25 d2i5nc1 a.138.1.2 (C:1-332) Ph 30.2 14 0.001 33.4 3.1 38 294-332 236-278 (332)
26 d1rkta1 a.4.1.9 (A:2-82) Hypot 29.6 8.7 0.00063 26.7 1.2 32 94-135 44-75 (81)
27 d3c07a1 a.4.1.9 (A:15-89) Puta 28.7 12 0.00086 25.4 1.8 32 94-135 38-69 (75)
28 d2hkua1 a.4.1.9 (A:18-87) Puta 27.2 16 0.0011 24.8 2.2 12 94-105 33-44 (70)
29 d1eysc_ a.138.1.2 (C:) Photosy 27.1 16 0.0011 32.8 2.8 37 295-332 218-258 (310)
30 d2iw5b1 a.4.1.3 (B:376-440) RE 25.7 9.4 0.00068 25.9 0.8 28 160-191 1-28 (65)
31 d1sgma1 a.4.1.9 (A:5-77) Putat 25.1 30 0.0022 23.1 3.5 14 94-107 35-50 (73)
32 d1jt6a1 a.4.1.9 (A:2-72) Multi 24.8 18 0.0013 24.3 2.2 12 94-105 34-45 (71)
33 d2dsya1 d.304.1.2 (A:3-82) Hyp 23.5 25 0.0018 24.9 2.9 26 299-332 33-58 (80)
34 d2id3a1 a.4.1.9 (A:13-80) Puta 22.7 14 0.001 24.8 1.2 12 94-105 39-50 (68)
35 d2g3ba1 a.4.1.9 (A:2-73) Putat 21.2 23 0.0017 23.8 2.2 12 94-105 35-46 (72)
36 d2vkva1 a.4.1.9 (A:6-67) Tetra 20.7 18 0.0013 23.9 1.4 12 94-105 32-43 (62)
No 1
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=78.45 E-value=0.56 Score=33.02 Aligned_cols=37 Identities=19% Similarity=0.436 Sum_probs=29.4
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcccCC
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGIDNG 140 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDaiDNG 140 (343)
|-|.+|+||+.. ++.+..++..++..+.+.++.+|.|
T Consensus 40 s~~t~Y~~F~~K----------e~L~~~~~~~~~~~~~~~l~~~~pG 76 (76)
T d2fd5a1 40 TVGGFYAHFQSK----------DALMLEAFEQLLGKRRELLGELDPG 76 (76)
T ss_dssp CGGGGGGTCSCH----------HHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred CccchhhcCCCH----------HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 458999999844 5567777888888899988888876
No 2
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=74.38 E-value=0.59 Score=32.78 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=27.5
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhccc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGID 138 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDaiD 138 (343)
|.|.+|+||+.. ++.+..++....+.++..+.+++
T Consensus 37 s~~t~y~~F~~K----------~~l~~~~~~~~~~~~~~~l~a~~ 71 (72)
T d1pb6a1 37 SKTNLLYYFPSK----------EALYIAVLRQILDIWLAPLKAFR 71 (72)
T ss_dssp CHHHHHHHSSSH----------HHHHHHHHHHHHHHHTHHHHHCC
T ss_pred ChHHHHHHCcCH----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 568999999844 56677888888888888887764
No 3
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=64.61 E-value=1.5 Score=30.06 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=26.2
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhccc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGID 138 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDaiD 138 (343)
|-|.||+||+.. ++.+..++....+.+.+.+++++
T Consensus 34 s~~~iy~~F~sK----------~~L~~~~~~~~~~~~~~~~~~~~ 68 (69)
T d2np5a1 34 SIGAVQHHFSTK----------DEMFAFALRTLVDKLLARLSEVE 68 (69)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHHHHHcc
Confidence 457899999844 45677777888888888887764
No 4
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=54.14 E-value=2 Score=30.21 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=23.0
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVD 135 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ID 135 (343)
|-|.+|+||+.. ++.+..++..+++.+.+.++
T Consensus 42 s~~~~Y~~F~~k----------~~L~~~~~~~~~~~~~~~~~ 73 (79)
T d2oi8a1 42 SGPALYRYFDGR----------DELITELIRDAYRSQADSLR 73 (79)
T ss_dssp CHHHHHTTCSSH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhcCCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 457899999844 45566777777777777764
No 5
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=53.65 E-value=1.7 Score=30.30 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=24.6
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhcccC
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGIDN 139 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDaiDN 139 (343)
|-|.+|+||+.. ++.+..+...+.+.+.+.+..+++
T Consensus 37 s~~~iY~~F~sK----------~~L~~~~~~~~~~~~~~~~~~i~~ 72 (74)
T d2g7sa1 37 RNASIHHHFPSK----------SDLVCKLVSQYRQEAEAGIAELEK 72 (74)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHCcCH----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999844 445566666777777777766654
No 6
>d1pk6c_ b.22.1.1 (C:) Complement c1q globular head, C chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.16 E-value=2.3 Score=32.53 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=18.8
Q ss_pred cEEEecCCcccCCCCCCcCCCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQKT 73 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQr~ 73 (343)
.+.+|+|+.||++++||==...|
T Consensus 26 ~~~~N~G~~yd~stg~FTaPv~G 48 (129)
T d1pk6c_ 26 AVLTNPQGDYDTSTGKFTCKVPG 48 (129)
T ss_dssp EEEECTTCCEETTTTEEECSSCE
T ss_pred eEEECCCCCccCCCCEEECCcCC
Confidence 57899999999999988655544
No 7
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=46.37 E-value=4.2 Score=27.76 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=21.7
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVD 135 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ID 135 (343)
|-|.+|+||+.. ++.+..++...+..+.+.++
T Consensus 34 s~~~~y~~F~~K----------~~L~~~~~~~~~~~~~~~~~ 65 (72)
T d1vi0a1 34 ADGTIYLYFKNK----------EDILISLFKEKMGQFIERME 65 (72)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 458899999844 44556666666666666654
No 8
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=45.28 E-value=4.5 Score=27.82 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=23.1
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhccc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGID 138 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDaiD 138 (343)
|-|.+|.||+.. ++.+..++..+.+.+.+.+..+.
T Consensus 37 s~~t~Y~~F~~K----------~~L~~~~~~~~~~~~~~~l~~~~ 71 (74)
T d1v7ba1 37 SKSGLIYHFPSR----------HALLLGMHELLADDWDKELRDIT 71 (74)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHhhhCCCH----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999844 34456666666666666665544
No 9
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=42.44 E-value=6.9 Score=26.91 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=9.5
Q ss_pred cccchHHHHHHH
Q psy15810 94 SAGLIYCHFGLD 105 (343)
Q Consensus 94 SAGLIykhfG~~ 105 (343)
|-|-||+||+..
T Consensus 36 s~~~iY~~F~~k 47 (75)
T d2id6a1 36 AKGLIFHYFKNK 47 (75)
T ss_dssp CTHHHHHHHSSH
T ss_pred CHHHHHHHCCCH
Confidence 568899999944
No 10
>d1pk6b_ b.22.1.1 (B:) Complement c1q globular head, B chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.64 E-value=3.5 Score=31.27 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=18.6
Q ss_pred cEEEecCCcccCCCCCCcCCCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQKT 73 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQr~ 73 (343)
.+++|+|+.||++++||-=.-.|
T Consensus 26 ~~~~n~g~~ydtstg~FTaPv~G 48 (132)
T d1pk6b_ 26 HVITNMNNNYEPRSGKFTCKVPG 48 (132)
T ss_dssp EEEEEETSCEETTTTEEECSSCE
T ss_pred EEEECCCCcccCCCCeEEcccCc
Confidence 58899999999999988654433
No 11
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=41.01 E-value=6.5 Score=27.92 Aligned_cols=11 Identities=27% Similarity=0.313 Sum_probs=9.1
Q ss_pred cccchHHHHHH
Q psy15810 94 SAGLIYCHFGL 104 (343)
Q Consensus 94 SAGLIykhfG~ 104 (343)
|-|.+|+||+.
T Consensus 44 s~~~~Y~~F~s 54 (88)
T d1t33a1 44 NIAAITYYFGS 54 (88)
T ss_dssp CHHHHHHHHSS
T ss_pred ChhhhhccCCC
Confidence 56899999993
No 12
>d1pk6a_ b.22.1.1 (A:) Complement c1q globular head, A chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.79 E-value=3.7 Score=31.07 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=17.9
Q ss_pred cEEEecCCcccCCCCCCcCCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQK 72 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQr 72 (343)
.+.+|+|+-||++++||-=--.
T Consensus 24 ~~~~n~g~~yntStg~FTaPv~ 45 (133)
T d1pk6a_ 24 TVITNQEEPYQNHSGRFVCTVP 45 (133)
T ss_dssp EEEEEETCCEETTTTEEECCSC
T ss_pred eEEECCCCCCcCCCCEEEeeEc
Confidence 4788999999999999864443
No 13
>d1o91a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Mouse (Mus musculus), isoform VIII [TaxId: 10090]}
Probab=39.39 E-value=3.9 Score=31.17 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.0
Q ss_pred cEEEecCCcccCCCCCCcCCCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQKT 73 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQr~ 73 (343)
.+.+|+|+.||++++||-=-..|
T Consensus 24 ~~~~N~g~~yntstg~FTaPvaG 46 (131)
T d1o91a_ 24 KLLYNGRQNYNPQTGIFTCEVPG 46 (131)
T ss_dssp EEEEEETTCEETTTTEEECCSCE
T ss_pred eEEECCCCCeeCCCCEEEcccce
Confidence 57899999999999998765544
No 14
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=37.82 E-value=5.4 Score=27.55 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=20.3
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEV 134 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~I 134 (343)
|-|.+|.|||.. ++.+..+++.+.+.|.+.+
T Consensus 38 s~~~~Y~~F~~K----------~~L~~~~~~~~~~~~~~~v 68 (75)
T d2hyja1 38 SKSGVHKHFGTK----------ETLQISTLDKAFVDFWHRV 68 (75)
T ss_dssp CHHHHHTTCSSH----------HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHHH
Confidence 568999999844 4455566666666665543
No 15
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=37.21 E-value=6.8 Score=27.02 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=20.9
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhhc
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDG 136 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~IDa 136 (343)
|-|.+|+||+-. ++.+..++..+.+.+.+.++.
T Consensus 39 s~~~lY~~F~~K----------~~L~~~~~~~~~~~~~~~~~~ 71 (77)
T d2gfna1 39 STGVLNHYFGSR----------HELLLAALRRAGDIQGDRYRT 71 (77)
T ss_dssp CHHHHHHHTSSH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 467899999844 344555556666666655544
No 16
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=36.75 E-value=8.3 Score=26.15 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=19.6
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEV 134 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~I 134 (343)
|-|.+|+|||.. +..+..+++..+..+...+
T Consensus 35 s~~~~Y~~F~~K----------~~l~~~~~~~~~~~~~~~v 65 (68)
T d2d6ya1 35 NKQLIYAYYGNK----------GELFASVLEKKMLDLAISV 65 (68)
T ss_dssp CHHHHHHHHSSH----------HHHHHHHHHHHHHHHHHHS
T ss_pred chhHHHHHCcCH----------HHHHHHHHHHHHHHHHhhC
Confidence 568899999944 3345555666666655443
No 17
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.93 E-value=7.2 Score=26.98 Aligned_cols=32 Identities=13% Similarity=0.407 Sum_probs=21.0
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVD 135 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ID 135 (343)
|-|.+|+||+.. ++.+..++..++..++..++
T Consensus 37 s~~s~y~~F~~K----------~~l~~~~~~~~~~~~~~~~~ 68 (79)
T d2fbqa1 37 NLAAVNYHFGSK----------KALIQAVFSRFLGPFCASLE 68 (79)
T ss_dssp CHHHHHHHTCSH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHCcCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 357899999844 34456666666666666654
No 18
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=34.90 E-value=4.5 Score=28.26 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=19.3
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEV 134 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~I 134 (343)
|-|.+|+||+.. ++.+..+++.+++.+++.+
T Consensus 40 s~~t~y~~F~sK----------e~L~~~~~~~~~~~~~~~~ 70 (78)
T d2o7ta1 40 GVATLYRNFPDR----------FTLDMACAQYLFNVVISLQ 70 (78)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHHH
Confidence 568999999844 3445555555555555444
No 19
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=34.51 E-value=3.5 Score=28.24 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=18.9
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQE 133 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ 133 (343)
|-|.||+||+.. ++.+..+.+.+.+.|.++
T Consensus 36 s~~~iy~hF~~K----------~~L~~~~~~~~~~~~~~~ 65 (68)
T d1z0xa1 36 QAPAIYWYFKNK----------QALLQSMAEAIEEHFQEP 65 (68)
T ss_dssp CHHHHHTTCSSH----------HHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHhcCCH----------HHHHHHHHHHHHhhcccc
Confidence 468899999844 344555556666555444
No 20
>d1gr3a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Human (Homo sapiens), isoform X [TaxId: 9606]}
Probab=33.86 E-value=5.6 Score=30.12 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=16.5
Q ss_pred cEEEecCCcccCCCCCCcCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHH 70 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHH 70 (343)
.+.+|+|+-||++++||-=-
T Consensus 25 ~~~~n~G~~yntstg~FTaP 44 (132)
T d1gr3a_ 25 KILYNRQQHYDPRTGIFTCQ 44 (132)
T ss_dssp EEEECTTCCEETTTTEEECS
T ss_pred eEEECCCCCeeCCCCEEEee
Confidence 46789999999999987543
No 21
>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=33.80 E-value=8.5 Score=31.10 Aligned_cols=45 Identities=33% Similarity=0.423 Sum_probs=32.5
Q ss_pred eEEecC--CCcchhHHHHHHHHHHh-CCCCeEEeecCccccccccEEEecCC
Q psy15810 10 TIGTHS--GMFHCDEVLGCSMLKLL-YPDAEIIRTRDQKELDKLDLVLDVGG 58 (343)
Q Consensus 10 ~IgTH~--G~FHaDEvlA~~lL~~l-y~~a~IvRTRD~~~l~~~diVvDVGg 58 (343)
+||.=+ |.|+- + ...|+.+ +++++++.+|+++.|++||.++=-||
T Consensus 4 kIGvl~l~G~~~~--~--~~al~~lg~~~~~v~~~~~~~~l~~~D~lIlPGg 51 (218)
T d2abwa1 4 TIGVLSLQGDFEP--H--INHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGG 51 (218)
T ss_dssp EEEEECTTSCCHH--H--HHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCS
T ss_pred EEEEEeCCCcHHH--H--HHHHHHcCCCceEEEEeCCHHHHhhCCEEEEcCC
Confidence 444434 77754 2 2346666 88999999999999999997774554
No 22
>d1c3ha_ b.22.1.1 (A:) 30 kDa adipocyte complement-related protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.55 E-value=6.4 Score=30.31 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=16.9
Q ss_pred cEEEecCCcccCCCCCCcCCC
Q psy15810 51 DLVLDVGGEYNPDKLRFDHHQ 71 (343)
Q Consensus 51 diVvDVGg~YDp~~~rfDHHQ 71 (343)
.+.+|+|+-||++++||==-.
T Consensus 27 ~~~~N~G~~yntStg~FTaPv 47 (137)
T d1c3ha_ 27 KIFYNQQNHYDGSTGKFYCNI 47 (137)
T ss_dssp EEEECTTCCEETTTTEEECCS
T ss_pred eEEECCCCcccCCCCEEEeCc
Confidence 477899999999999875433
No 23
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=31.01 E-value=9.3 Score=25.87 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=9.2
Q ss_pred cccchHHHHHHH
Q psy15810 94 SAGLIYCHFGLD 105 (343)
Q Consensus 94 SAGLIykhfG~~ 105 (343)
|-|-+|+||+..
T Consensus 36 s~~t~Y~~F~~K 47 (73)
T d1t56a1 36 SRPTFYFYFPSK 47 (73)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHCcCH
Confidence 457899999843
No 24
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.72 E-value=10 Score=25.42 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=20.5
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVD 135 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ID 135 (343)
|-|-+|+||+.. ++.+..++....+.+.+.++
T Consensus 33 s~~t~Y~~F~sK----------~~L~~~~~~~~~~~~~~~l~ 64 (70)
T d2gena1 33 SIGSLYHHFGNK----------ERIHGELYLAGIGQYAALLE 64 (70)
T ss_dssp CHHHHHHHTCSH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 457899999843 44555666666666665554
No 25
>d2i5nc1 a.138.1.2 (C:1-332) Photosynthetic reaction centre (cytochrome subunit) {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=30.22 E-value=14 Score=33.44 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=26.4
Q ss_pred hhhhcCCCCcEEeecCCcccccC---C--HHHHHHHHHHHHHHh
Q psy15810 294 LSSVAGIPDCIFAHANGFIGGNK---T--REGALQMALKTLELA 332 (343)
Q Consensus 294 L~~~sGI~g~vF~H~sGFigg~~---t--~e~Al~mA~~al~~~ 332 (343)
.|...|+ +|+|||+|+=...+. | +..|--+-+++.+.+
T Consensus 236 ~S~sLGV-nCtfCHNsRaF~dw~~qstPqr~taw~gi~Mvr~iN 278 (332)
T d2i5nc1 236 ISDSLGT-NCTFCHNAQTFESWGKKSTPQRAIAWWGIRMVRDLN 278 (332)
T ss_dssp HHHHHTC-CGGGTBCGGGTTCCBTTBCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCC-CcccccCccccccccccCChHHHHHHHHHHHHHHHH
Confidence 4777785 899999999887752 2 566555555555554
No 26
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=29.62 E-value=8.7 Score=26.70 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=19.5
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVD 135 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ID 135 (343)
|-|.+|+||+.. ++.+..+.......+++.++
T Consensus 44 s~~t~Y~~F~~K----------~~L~~~~~~~~~~~~~~~l~ 75 (81)
T d1rkta1 44 SRGGVYLYFSST----------EEMFRRIIETGLDEGLRKLD 75 (81)
T ss_dssp CHHHHHTTCSCH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 457899999843 34445555555555555554
No 27
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=28.74 E-value=12 Score=25.38 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=20.4
Q ss_pred cccchHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhhhhh
Q psy15810 94 SAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVD 135 (343)
Q Consensus 94 SAGLIykhfG~~ii~~~~~~~~~~~~~~l~~kvy~~fI~~ID 135 (343)
|-|-+|+||+.. ++.+..++..++..+...++
T Consensus 38 s~~~~y~~F~~k----------~~L~~~~~~~~~~~~~~~~~ 69 (75)
T d3c07a1 38 SVGNAYYYFAGK----------EHLIQGFYDRIAAEHRAAVR 69 (75)
T ss_dssp CHHHHHHHCSSH----------HHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 457899999843 44455566666666665554
No 28
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=27.21 E-value=16 Score=24.84 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=9.5
Q ss_pred cccchHHHHHHH
Q psy15810 94 SAGLIYCHFGLD 105 (343)
Q Consensus 94 SAGLIykhfG~~ 105 (343)
|.|.+|+||+..
T Consensus 33 s~~~~Y~~F~~K 44 (70)
T d2hkua1 33 HPNQVTYYYGSK 44 (70)
T ss_dssp CHHHHHHHHSSH
T ss_pred ChhhHHhcCCCH
Confidence 468999999843
No 29
>d1eysc_ a.138.1.2 (C:) Photosynthetic reaction centre (cytochrome subunit) {Thermochromatium tepidum [TaxId: 1050]}
Probab=27.11 E-value=16 Score=32.77 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=24.4
Q ss_pred hhhcCCCCcEEeecCCcccccC--C--HHHHHHHHHHHHHHh
Q psy15810 295 SSVAGIPDCIFAHANGFIGGNK--T--REGALQMALKTLELA 332 (343)
Q Consensus 295 ~~~sGI~g~vF~H~sGFigg~~--t--~e~Al~mA~~al~~~ 332 (343)
|...|+ +|+|||+|+=...+. | +..|--+-+++.+.+
T Consensus 218 S~SLGV-NCtfCHNsRaF~~w~qstPqr~tAw~gIrMvrdiN 258 (310)
T d1eysc_ 218 SDSLGV-GCTSCHNTRAFNDWTQSTPKRTTAWYAIRHVRDIN 258 (310)
T ss_dssp HHHHTC-CGGGTCCTTCTTCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HhccCC-CcccccCCcccCccccCChHHHHHHHHHHHHHHHH
Confidence 455674 899999999998887 2 444444444444443
No 30
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.69 E-value=9.4 Score=25.86 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=22.6
Q ss_pred hcccCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q psy15810 160 VSRLNPKWNDTKTVDEMELFKKAMAITLEEFQ 191 (343)
Q Consensus 160 V~~lNP~w~~~~~~~~de~F~~A~~l~~~ef~ 191 (343)
|.+.|+.|.+ ++++.|.+|+..-|..|.
T Consensus 1 ~~k~~~~WT~----eE~~~f~~~~~~~G~~w~ 28 (65)
T d2iw5b1 1 IQKCNARWTT----EEQLLAVQAIRKYGRDFQ 28 (65)
T ss_dssp CCCCCSSCCH----HHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCCH----HHHHHHHHHHHHhCchHH
Confidence 4568999965 679999999999997743
No 31
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=25.10 E-value=30 Score=23.14 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=10.7
Q ss_pred cccchHHHH-H-HHHH
Q psy15810 94 SAGLIYCHF-G-LDIL 107 (343)
Q Consensus 94 SAGLIykhf-G-~~ii 107 (343)
|-|-+|+|| + |+-|
T Consensus 35 s~~~iy~~F~~~Ke~L 50 (73)
T d1sgma1 35 PKGSLYHFFPNGKEEL 50 (73)
T ss_dssp CSCHHHHSTTTCHHHH
T ss_pred CHHHHHHHcCCCHHHH
Confidence 568899999 7 6644
No 32
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=24.79 E-value=18 Score=24.26 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=9.4
Q ss_pred cccchHHHHHHH
Q psy15810 94 SAGLIYCHFGLD 105 (343)
Q Consensus 94 SAGLIykhfG~~ 105 (343)
|-|.+|+||+..
T Consensus 34 s~~~~y~~F~~K 45 (71)
T d1jt6a1 34 SKGNLYYHFKTK 45 (71)
T ss_dssp CHHHHHHHHSSH
T ss_pred CHhHHHHHCcCH
Confidence 468899999943
No 33
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=23.47 E-value=25 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.021 Sum_probs=21.4
Q ss_pred CCCCcEEeecCCcccccCCHHHHHHHHHHHHHHh
Q psy15810 299 GIPDCIFAHANGFIGGNKTREGALQMALKTLELA 332 (343)
Q Consensus 299 GI~g~vF~H~sGFigg~~t~e~Al~mA~~al~~~ 332 (343)
.+|||+. ..+|.|.|+++|+.||+..
T Consensus 33 Dlpgc~t--------~GdT~eEA~~~a~eAl~~~ 58 (80)
T d2dsya1 33 DLPGVWA--------TGKSLKECEANLQAALEDW 58 (80)
T ss_dssp TSTTCEE--------EESSHHHHHHHHHHHHHHH
T ss_pred CCCcEEe--------cCCCHHHHHHHHHHHHHHH
Confidence 3688843 4699999999999999875
No 34
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=22.72 E-value=14 Score=24.79 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=9.6
Q ss_pred cccchHHHHHHH
Q psy15810 94 SAGLIYCHFGLD 105 (343)
Q Consensus 94 SAGLIykhfG~~ 105 (343)
|-|.+|+||+..
T Consensus 39 s~~~iY~~F~~k 50 (68)
T d2id3a1 39 GKTTVYRRWGTP 50 (68)
T ss_dssp CHHHHHHHHCSH
T ss_pred CHHHHHHHCcCH
Confidence 568999999843
No 35
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=21.22 E-value=23 Score=23.78 Aligned_cols=12 Identities=50% Similarity=0.855 Sum_probs=9.4
Q ss_pred cccchHHHHHHH
Q psy15810 94 SAGLIYCHFGLD 105 (343)
Q Consensus 94 SAGLIykhfG~~ 105 (343)
|-|.+|+||+..
T Consensus 35 s~~~ly~~F~~K 46 (72)
T d2g3ba1 35 SPGLLYYHFKDR 46 (72)
T ss_dssp CHHHHHHHHCSH
T ss_pred CHHHHHHHCcCH
Confidence 568899999843
No 36
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=20.71 E-value=18 Score=23.88 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=9.2
Q ss_pred cccchHHHHHHH
Q psy15810 94 SAGLIYCHFGLD 105 (343)
Q Consensus 94 SAGLIykhfG~~ 105 (343)
|.|-||+||+..
T Consensus 32 s~~tiy~~F~~K 43 (62)
T d2vkva1 32 EQPTLYWHVKNK 43 (62)
T ss_dssp CHHHHHHHSCCH
T ss_pred CHHHHHHHCCCH
Confidence 568899999843
Done!