RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15810
(343 letters)
>gnl|CDD|217674 pfam03690, UPF0160, Uncharacterized protein family (UPF0160). This
family of proteins contains a large number of metal
binding residues. The patterns are suggestive of a
phosphoesterase function. The conserved DHH motif may
mean this family is related to pfam01368.
Length = 315
Score = 454 bits (1170), Expect = e-162
Identities = 165/324 (50%), Positives = 218/324 (67%), Gaps = 11/324 (3%)
Query: 9 KTIGTHSGMFHCDEVLGCSMLKLL--YPDAEIIRTRDQKELDKLDLVLDVGGEYNPDKLR 66
K IGTHSG FH DEVL +MLKLL Y DAEI+RTRD + L+K D+V+DVGG Y+P+K R
Sbjct: 1 KKIGTHSGSFHADEVLAVAMLKLLPEYKDAEIVRTRDPEVLEKCDIVVDVGGVYDPEKKR 60
Query: 67 FDHHQKTFNETFASVRKEDKFNKVKLSSAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKV 126
FDHHQ+ F ETF + + KLSSAGL+Y HFG +I+++L + +E + L+DKV
Sbjct: 61 FDHHQRGFPETF------LREDGTKLSSAGLVYKHFGKEIIRELLKLLDEEDVELLYDKV 114
Query: 127 YDNLIQEVDGIDNGIPMFEGEPIYHISTHLGARVSRLNPKWNDTKTVDEMELFKKAMAIT 186
Y + ++E+D IDNG+ ++GEP Y I+T L ARV RLNP WN+ DE F KA+ +
Sbjct: 115 YKSFVEEIDAIDNGVSQYDGEPKYKINTSLSARVGRLNPTWNEPDPEDEDAAFLKAVELA 174
Query: 187 LEEFQDRIDYYCTQWWPARKLVLDAIKERFSLHESGKIIELKTPCPWKSHFFELEQEMEL 246
EF+ +DYY W PAR +V +AI +RF + SG+I+ L CPWK H FELE+E L
Sbjct: 175 GSEFERFVDYYAASWLPARAIVAEAIAKRFEVDPSGRILVLDRGCPWKEHLFELEKEHNL 234
Query: 247 GDQIRFAIFPADDFNSTFRVQAVSLTEKSFVLRTPLYKTWMGLRDDDLSSVAGIPDCIFA 306
+ I+F ++P + +RVQ V + SF R PL + W GLRD++LS V+GIP +F
Sbjct: 235 -EGIKFVLYPDG--SGQWRVQTVPVEPGSFESRKPLPEAWRGLRDEELSEVSGIPGAVFV 291
Query: 307 HANGFIGGNKTREGALQMALKTLE 330
HA+GFIGG KTREGAL MA LE
Sbjct: 292 HASGFIGGAKTREGALAMAELALE 315
>gnl|CDD|226736 COG4286, COG4286, Uncharacterized conserved protein related to MYG1
family [Function unknown].
Length = 306
Score = 265 bits (678), Expect = 2e-87
Identities = 139/329 (42%), Positives = 187/329 (56%), Gaps = 26/329 (7%)
Query: 5 SRTVKTIGTHSGMFHCDEVLGCSMLKLL--YPDAEIIRTRDQKELDKLDLVLDVGGEYNP 62
+ + THSG FH DEVL ++L+LL +PDA+I+R+RD + LD D+V DVGG Y+P
Sbjct: 1 MQIPMKLVTHSGSFHADEVLASAVLRLLDLFPDAKIVRSRDPQVLDSCDIVYDVGGVYDP 60
Query: 63 DKLRFDHHQKTFNETFASVRKEDKFNKVKLSSAGLIYCHFGLDILKKLSPIQEEYFLNKL 122
+K RFDHHQ++FNETF K KLSSAGLIY +FG D L + E L L
Sbjct: 61 EKKRFDHHQRSFNETF------SPKYKTKLSSAGLIYKYFGRDGLATYGINRSEDDLETL 114
Query: 123 FDKVYDNLIQEVDGIDNGIPMFEG-EPIYHISTHLGARVSRLNPKWNDTKTVDEMELFKK 181
++KVY+ + VD IDNGI ++ EP + + V NP W+D DE L
Sbjct: 115 YEKVYNTFVLGVDAIDNGISIYGEIEPFRSLP-DI---VESFNPDWSDEDADDEGFLEAL 170
Query: 182 AMAITLEEFQDRIDYYCTQWWPARKLVLDAIKERFSLHESGKIIELKTPCPWKSHFFELE 241
A A +F D + W A LV+ AI E I+ L CPWK H FE+E
Sbjct: 171 AFAS---DFLDNLFKTIVSWLRAYALVVKAIAET-----EDVILVLDRFCPWKEHIFEIE 222
Query: 242 QEMELGDQIRFAIFPADDFNSTFRVQAVSLTEKSFVLRTPLYKTWMGLRDDDLSSVAGIP 301
E++ +F +FP +R++ + F +R PL + W GLR ++LS+V+GIP
Sbjct: 223 AEIK--KDFKFVVFPDSS---AWRLRGIPKDLTRFEVRVPLPEEWRGLRGEELSTVSGIP 277
Query: 302 DCIFAHANGFIGGNKTREGALQMALKTLE 330
CIF HA GFIGGNKTRE AL+MA +L+
Sbjct: 278 GCIFCHAGGFIGGNKTREAALEMARLSLK 306
>gnl|CDD|225248 COG2373, COG2373, Large extracellular alpha-helical protein [General
function prediction only].
Length = 1621
Score = 34.7 bits (80), Expect = 0.076
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 20/97 (20%)
Query: 255 FPADDFNSTFRVQAVSLT-------EKSFVLRTPLYKTWMG---LRDDDLSSVAGIPDCI 304
FP DFN RV AV+ T E ++R P+ L D SS +
Sbjct: 980 FPIPDFNGRLRVMAVAWTDGAVGQAEAELIVRKPVIVEASMPRFLAPGDRSSAG-----L 1034
Query: 305 FAHANGFIGGNK-TREGAL----QMALKTLELAEKDE 336
G+ T EG L + A +TL LAE
Sbjct: 1035 DVFNLTGKAGDVLTVEGTLKFNGKEAPQTLTLAEGSA 1071
>gnl|CDD|225343 COG2723, BglB,
Beta-glucosidase/6-phospho-beta-glucosidase/beta-
galactosidase [Carbohydrate transport and metabolism].
Length = 460
Score = 33.0 bits (76), Expect = 0.20
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 21/79 (26%)
Query: 127 YDNLIQEVDGIDNGIPMFEGEPI---YHISTHLGARVSRLNPK---WNDTKTVDEMELFK 180
YD L E+ GI EP YH L L W + +TVD +
Sbjct: 102 YDRLFDEL--KARGI-----EPFVTLYHFDLPLW-----LQKPYGGWENRETVDAFARYA 149
Query: 181 KAMAITLEEFQDRIDYYCT 199
+ E F D++ Y+ T
Sbjct: 150 ATVF---ERFGDKVKYWFT 165
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 30.0 bits (68), Expect = 1.6
Identities = 19/38 (50%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 302 DCIFAHAN---GFIGGNKTREGALQMALKTLELAEKDE 336
D F N GF GG K R LQMAL ELA DE
Sbjct: 140 DPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDE 177
>gnl|CDD|182589 PRK10614, PRK10614, multidrug efflux system subunit MdtC;
Provisional.
Length = 1025
Score = 29.3 bits (66), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 309 NGFIGGNKTREGALQMALKTLELAEKDEKAEQ 340
GF GG++ G + + LK L E+ E A+Q
Sbjct: 596 TGFTGGSRVNSGMMFITLKPLS--ERSETAQQ 625
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 29.0 bits (65), Expect = 4.7
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 108 KKLSPIQEEYFLNKLFDKVYDNL--IQEVDGIDNGIPMFE 145
K S + LNK+ D++ NL + + DNG P+ E
Sbjct: 55 GKTSVAERANILNKIADRMEANLEMLAVAETWDNGKPVRE 94
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 28.5 bits (64), Expect = 6.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 108 KKLSPIQEEYFLNKLFDKVYDNL--IQEVDGIDNGIPMFE 145
K S + LNK+ D++ +NL + + +DNG P+ E
Sbjct: 55 GKTSVAERANILNKIADRIEENLELLAVAETLDNGKPIRE 94
>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 1525
Score = 28.5 bits (63), Expect = 6.2
Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 15/130 (11%)
Query: 20 CDEVLGCSMLKLLYPDAEIIRTRDQKELDKLDLVLDVGGEYNPDK--------LRFDHHQ 71
E ++ + +R + + ++L L+L Y D+ +
Sbjct: 1158 FPEFPNADDEQMESVCMKFLREKLSADDNELLLMLLAKSNYRNDRSLDMKGVVRMIERPG 1217
Query: 72 KTFNETFASVRKEDKF---NKVKLSSAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYD 128
SV+KE+ V L LIY HF + S I + +N L +VY
Sbjct: 1218 DHL----LSVKKEEYRERHTIVYLPLWRLIYGHFADTVYNMYSSIISQLDMNSLDSEVYV 1273
Query: 129 NLIQEVDGID 138
L
Sbjct: 1274 LLRGCFLLST 1283
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.415
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,735,089
Number of extensions: 1753828
Number of successful extensions: 1533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1524
Number of HSP's successfully gapped: 15
Length of query: 343
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 245
Effective length of database: 6,590,910
Effective search space: 1614772950
Effective search space used: 1614772950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)