RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15810
(343 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 8e-10
Identities = 58/362 (16%), Positives = 109/362 (30%), Gaps = 84/362 (23%)
Query: 24 LGCSMLKLLYPDAEIIRTRDQKELDKLDLVLDVGGEYNPDKLRFDHHQKTFNET-----F 78
L C +L + TR ++ V D + DHH T
Sbjct: 264 LSCKIL---------LTTRFKQ-------VTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 79 ASV--RKEDKFNKVKLSSAGLIYCHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQE-VD 135
+ + L++ + + + + DK+ +I+ ++
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATWDNWKHVNCDKL-TTIIESSLN 364
Query: 136 GIDNGI--PMFEGEPIYHISTHLGARV-SRLNPKWNDTKTVDEM----ELFKKAMAITLE 188
++ MF+ ++ S H+ + S + W D D M +L K ++ +E
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSL---VE 418
Query: 189 EFQDRIDYYCTQWWPARKLVLDA-IKERFSLHESGKIIE----LKTPCPWKS-------- 235
+ P+ L L ++ ++LH I++ KT
Sbjct: 419 KQPKESTISI----PSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 236 -------HFFELEQEMELGDQIRFAIFPAD--DFN---STFRVQAVSLTEKSFVLRT--- 280
H +E R +F DF R + + +L T
Sbjct: 473 FYSHIGHHLKNIEHPE------RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 281 -PLYKTWMGLRDDDLSS-VAGIPDCIFAHANGFIGGNKTREGALQMALKTLELAEKDEKA 338
YK ++ D V I D + I T L++AL + A +E
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD--LLRIALMAEDEAIFEEAH 584
Query: 339 EQ 340
+Q
Sbjct: 585 KQ 586
Score = 41.4 bits (96), Expect = 4e-04
Identities = 33/250 (13%), Positives = 60/250 (24%), Gaps = 92/250 (36%)
Query: 52 LVLD-VGGEYNPDKLR-FDHHQKTFNETFASVRKEDKFNKVKLSSAGLIYCHFGLDILKK 109
LVL V N F+ K T R + + + H LD
Sbjct: 248 LVLLNV---QNAKAWNAFNLSCKILLTT----RFKQVTDFLS----AATTTHISLDHHSM 296
Query: 110 -LSPIQEEYFLNKLFDKVYDNLIQEVDGIDNGIPMFEGEPIYHISTHLGARVSRLNPKWN 168
L+P + + L K D +L +EV + P +S +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PR-------RLSI-IAES--------- 336
Query: 169 DTKTVDEMELFKKAMAITLEEFQDRIDYYCTQWWPARKLVLDAIKERFSLHESGKIIELK 228
+ + D + + + D + + +
Sbjct: 337 ------------------IRDGLATWDNW-------KHVNCDKLTTIIE-----SSLNVL 366
Query: 229 TPCPWKSHFFELEQEMELGDQIRFAIFPADDFNSTFRVQAVSLTEKSFVLRTPLYKTWMG 288
P ++ F L ++FP + L W
Sbjct: 367 EPAEYRKMFDRL------------SVFPPS----------AHIPTILLSL------IWFD 398
Query: 289 LRDDDLSSVA 298
+ D+ V
Sbjct: 399 VIKSDVMVVV 408
Score = 40.2 bits (93), Expect = 0.001
Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 66/231 (28%)
Query: 42 RDQKELDK--LDLVLDVGGEYNPDKLRFDHHQKTFNETFASVRKEDKFNKVKLSSAGLIY 99
+ KE + L++ + + H+ + + + D + + Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEY---ALHRS-IVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 100 CHFGLDILKKLSPIQEEYFLNKLFDKVYDNLIQEVDGIDNGIPMFEGEPIYHISTHLGAR 159
H G LK + E LF V+ + F + I H ST A
Sbjct: 475 SHIGHH-LKNIE--HPERM--TLFRMVFLDF------------RFLEQKIRHDSTAWNAS 517
Query: 160 VSRLNPKWNDTKTVDEMELFKKAMAITLEEFQDRIDYYCTQWWPARKLVLDAIKERFSLH 219
S LN T+ +++ +K Y P + +++AI + F L
Sbjct: 518 GSILN-------TLQQLKFYKP---------------YICDNDPKYERLVNAILD-F-LP 553
Query: 220 ESGKIIELKTPCPWKSHFFELEQEMELGDQIRFAIFPADD--FNSTFR-VQ 267
+ + + + + D +R A+ D+ F + VQ
Sbjct: 554 KIEENL-ICSKYT---------------DLLRIALMAEDEAIFEEAHKQVQ 588
Score = 35.2 bits (80), Expect = 0.032
Identities = 39/215 (18%), Positives = 57/215 (26%), Gaps = 71/215 (33%)
Query: 169 DTKTVDEMEL-FKKAMAITLEEFQDRIDYYCTQWWPARKLVLDAIKERFSLHESGKIIEL 227
D +T E + +K +++ + F D D C K V D K S E II
Sbjct: 8 DFET-GEHQYQYKDILSVFEDAFVDNFD--C-------KDVQDMPKSILSKEEIDHIIMS 57
Query: 228 KTPCP------WK---------SHFFE--LEQEME-LGDQIRF-AIFPADDF-------- 260
K W F E L + L I+ P+
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 261 -----NSTFRVQAVSLTEKSFVLRTPLY-----------------KTWM---GLRDDDLS 295
N F VS + LR L KTW+ +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV- 176
Query: 296 SVAGIPDCIFAHANGFIG-GNKTREGALQMALKTL 329
+ IF ++ N + L+ L
Sbjct: 177 -QCKMDFKIF-----WLNLKNCNSPETVLEMLQKL 205
Score = 31.7 bits (71), Expect = 0.39
Identities = 47/346 (13%), Positives = 96/346 (27%), Gaps = 103/346 (29%)
Query: 69 HHQKTFNETFASVRKEDKFNKVKLSSAGLIYCHFGLDILKKLSPIQ-EEYFLNKLFDKVY 127
HH F ET + + ++ F + ++ + L +
Sbjct: 4 HHHMDF-ET----------GEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEI 51
Query: 128 DNLIQEVDGI--------------DNGIPMFEGEPI---YH-ISTHLGAR---------- 159
D++I D + + + F E + Y + + +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 160 -VSRLNPKWNDTKTVDEMELFKKAMAITLEE--FQDRIDYY--------CTQWWPARKLV 208
+ + + +ND + + + + + L + + R + W +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VA 167
Query: 209 LDAIK-ERFSLHESGKIIELKTPCPW------KSHFFELEQEMELGDQIRFAIFPADDFN 261
LD + KI W S LE +L QI D +
Sbjct: 168 LDVCLSYKVQCKMDFKIF-------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 262 STFRVQAVSL-TEKSFVLRTPLYKT--------W-------MGL--------RD----DD 293
S +++ S+ E +L++ Y+ L R D
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 294 LSSVAGIPDCIFAHANGFIGGNKTREGALQMALKTLELAEKDEKAE 339
LS+ + H+ T + + LK L+ +D E
Sbjct: 281 LSAATTTHISLDHHSMTL-----TPDEVKSLLLKYLDCRPQDLPRE 321
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 39/201 (19%), Positives = 62/201 (30%), Gaps = 72/201 (35%)
Query: 135 DGIDNGI----PMF--EGEPIYHISTHLGARVSRLNPKWNDTKTVDEMELF--KKAMAIT 186
D ++N PM + + V++ N K V E+ L K + ++
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDY----VNKTNSHLPAGKQV-EISLVNGAKNLVVS 380
Query: 187 -----LEEF--------------QDRIDYYCTQWWPARKLVLDAIKERFSLHESGKIIEL 227
L Q RI + ++ RKL RF L
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPF--SE----RKLKFSN---RF----------L 421
Query: 228 KTPCPWKSHFFELEQEMELGDQIRFAI-FPADDFNSTFRVQAVSLTEKSFVLRTPLYKTW 286
P+ SH ++ D ++ + F A D ++ P+Y T+
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKD------------------IQIPVYDTF 463
Query: 287 MG--LRDDDLSSVAGIPDCIF 305
G LR S I DCI
Sbjct: 464 DGSDLRVLSGSISERIVDCII 484
Score = 31.9 bits (72), Expect = 0.34
Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 53/160 (33%)
Query: 176 MELFKK---AMAITLEEFQDRIDYYCTQWWPARKLVLDAIKERFSLHESGKIIELKTPCP 232
M+L+K A + + +R D + FS+ + I + P
Sbjct: 1633 MDLYKTSKAAQDV----W-NRADNHFKD------------TYGFSILD----IVINNPVN 1671
Query: 233 WKSHFFELEQEMELGDQIRFAIFPADDFNSTFRVQAVSLTEKSFVLRTPLYKTWMGLRDD 292
HF E G +IR + A F + V TEK F ++
Sbjct: 1672 LTIHF-----GGEKGKRIR-ENYSAMIFETI--VDGKLKTEKIF-----------KEINE 1712
Query: 293 DLSSVAGIPDCIFAHANGFIGGNKTREGALQMALKTLELA 332
+S F G + + T + Q AL +E A
Sbjct: 1713 HSTS------YTFRSEKGLL--SAT-QFT-QPALTLMEKA 1742
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 27.5 bits (62), Expect = 4.1
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 30 KLLYPDAEII-RTRDQKELDKL 50
+ PD EII R E+ +
Sbjct: 93 RAKNPDIEIIARAHYDDEVAYI 114
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 27.1 bits (61), Expect = 7.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 51 DLVLDVGGEYNPDKLR 66
DLVL+V G+ + L
Sbjct: 191 DLVLEVRGKEVEESLG 206
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria,
transferase; HET: PG4; 1.62A {Plasmodium falciparum}
SCOP: c.23.16.1 PDB: 4ads_G
Length = 227
Score = 26.9 bits (59), Expect = 8.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 30 KLLYPDAEIIRTRDQKELDKLDLVLDVGGE 59
KL P II+ R+ +L D ++ GGE
Sbjct: 24 KLQIPSLNIIQVRNVHDLGLCDGLVIPGGE 53
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase transferase;
HET: 5RP; 2.90A {Thermotoga maritima}
Length = 208
Score = 26.7 bits (59), Expect = 10.0
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 26 CSMLKLLYPDAEIIRTRDQKELDKLDLVLDVGGE 59
L L E + + ++LD +D ++ GGE
Sbjct: 36 VEALHKL--GVETLIVKLPEQLDMVDGLILPGGE 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.415
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,418,149
Number of extensions: 333445
Number of successful extensions: 851
Number of sequences better than 10.0: 1
Number of HSP's gapped: 846
Number of HSP's successfully gapped: 12
Length of query: 343
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 249
Effective length of database: 4,077,219
Effective search space: 1015227531
Effective search space used: 1015227531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)