RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15810
(343 letters)
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans
[TaxId: 920]}
Length = 82
Score = 28.4 bits (62), Expect = 0.34
Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Query: 136 GID-NGIPMFEGEPIYHISTHLGARVSRLNPKWNDTKTVDEMELFKKAMAITLEEFQDRI 194
G+ + + + E+ ++ A A+ +
Sbjct: 10 GMTGRDTLYPIVPRLAGQHKSYMEAQLKAYKDHSRADQNGEIYMWPVAQALDSAKITALA 69
Query: 195 DYYCTQWWPAR 205
DY+ Q P +
Sbjct: 70 DYFNAQKPPMQ 80
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 27.7 bits (61), Expect = 2.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 294 LSSVAGIPDCI---F-AHANGFIGGNKTREGALQMALKTLELAEKD 335
LS+ P+ F +GF+ G EGA + L+ E A+K
Sbjct: 206 LSTRNEEPEKASRPFTLSRDGFVMG----EGAGVLVLEAYEHAKKR 247
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 150
Score = 26.9 bits (59), Expect = 2.1
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 306 AHANGFIGGNKTREGA---LQMALKTL 329
A G N + ++M LK L
Sbjct: 124 YRAGLNGGHNHGNDWGSAAVEMGLKAL 150
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 27.2 bits (59), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 306 AHANGFIGGNKTREGALQMALKTLELAEKD 335
NGF+ G EG+ + L++LE AEK
Sbjct: 229 KDRNGFVMG----EGSGMLVLESLEHAEKR 254
>d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.2 bits (59), Expect = 3.2
Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 7/116 (6%)
Query: 137 IDNGIPMFEGEPIYHISTHLG-----ARVSRLNPKWNDTKTVDEMELFKKAMAITLEEFQ 191
++ G + Y +G A V+R D+ + ++A+ +L++ Q
Sbjct: 37 LEVGYRSIDTAAAYKNEEGVGKALKNASVNREELFITTKLWNDDHKRPREALLDSLKKLQ 96
Query: 192 -DRIDYYCTQWW-PARKLVLDAIKERFSLHESGKIIELKTPCPWKSHFFELEQEME 245
D ID Y W PA ++A K L + G I + H L E
Sbjct: 97 LDYIDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETG 152
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 27.1 bits (59), Expect = 3.3
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 294 LSSVAGIPDCI---F-AHANGFIGGNKTREGALQMALKTLELAEKD 335
LS+ P + +GF+ G +GA + L+ E A+K
Sbjct: 207 LSTRNDNPQAASRPWDKERDGFVLG----DGAGMLVLEEYEHAKKR 248
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 26.8 bits (58), Expect = 3.4
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 306 AHANGFIGGNKTREGALQMALKTLELAEKD 335
+GF+ G EG+ + L+ LE A
Sbjct: 223 KDRDGFVMG----EGSGILILEELESALAR 248
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 26.9 bits (58), Expect = 3.4
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 306 AHANGFIGGNKTREGALQMALKTLELAEKD 335
+GF+ G EG+ + L+ E A++
Sbjct: 241 CDRDGFVIG----EGSGVIVLEEYEHAKRR 266
>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 3.2
[TaxId: 10090]}
Length = 104
Score = 25.8 bits (56), Expect = 4.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 183 MAITLEEFQDRIDYYCTQW 201
+ I+ E +D YYC QW
Sbjct: 71 LTISSMETEDAATYYCQQW 89
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 26.9 bits (58), Expect = 4.0
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 306 AHANGFIGGNKTREGALQMALKTLELAEKD 335
AH +GF+ G + ++ LE A
Sbjct: 224 AHRDGFVIA----GGGGMVVVEELEHALAR 249
>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda
variable domain, VL-lambda {Hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 108
Score = 25.5 bits (55), Expect = 4.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 183 MAITLEEFQDRIDYYCTQWW 202
+ I+ + +D YYC +
Sbjct: 71 LTISGAQPEDEAAYYCLSSY 90
>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium
botulinum, serotype A [TaxId: 1491]}
Length = 417
Score = 26.7 bits (59), Expect = 4.3
Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 82 RKEDKFNKVKLSSAGLIYCHFGLDILKKLSPIQEEYFLNKLFDK---VYDNLIQEVDGID 138
+ + +++S L FG K + +QE F ++K + L + +
Sbjct: 246 NAYYEMSGLEVSFEELRT--FGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVG 303
Query: 139 NGIPMFEGEPIYHISTHLGARVSRLNPKWNDTKTVDEM---ELFKKAMAITLEE 189
+ + ++ L+ + +VD++ +L+K I E+
Sbjct: 304 TTASLQYMKNVFK-------EKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTED 350
>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 25.6 bits (55), Expect = 9.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 77 TFASVRKEDKFNKVKLSSAGLIYCHFGLDILKKLS 111
T A V +ED F KV ++ +FG D+ + S
Sbjct: 1 TGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRS 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.415
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,335,415
Number of extensions: 64739
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 21
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)