Query psy15811
Match_columns 581
No_of_seqs 236 out of 2151
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:57:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02489 homocysteine S-methyl 100.0 3.4E-64 7.4E-69 525.1 32.4 294 264-575 21-334 (335)
2 KOG1579|consensus 100.0 1.5E-64 3.3E-69 504.3 28.0 293 262-576 15-316 (317)
3 PRK09485 mmuM homocysteine met 100.0 5.6E-63 1.2E-67 511.3 28.3 287 262-573 9-303 (304)
4 COG2040 MHT1 Homocysteine/sele 100.0 4.3E-63 9.4E-68 486.4 25.5 283 265-575 10-299 (300)
5 PLN02489 homocysteine S-methyl 100.0 4.4E-60 9.5E-65 494.2 31.2 294 4-308 19-330 (335)
6 PRK09485 mmuM homocysteine met 100.0 9.2E-60 2E-64 487.3 31.8 275 5-307 11-300 (304)
7 COG0646 MetH Methionine syntha 100.0 4.2E-60 9.2E-65 467.4 27.0 273 4-307 13-307 (311)
8 KOG1579|consensus 100.0 4.6E-57 9.9E-62 450.6 29.0 280 4-308 16-311 (317)
9 PRK07534 methionine synthase I 100.0 1.2E-56 2.7E-61 467.6 30.0 278 264-579 13-300 (336)
10 PF02574 S-methyl_trans: Homoc 100.0 2.5E-59 5.5E-64 485.8 6.9 287 265-574 1-305 (305)
11 COG0646 MetH Methionine syntha 100.0 5.2E-56 1.1E-60 438.4 25.2 283 262-574 13-311 (311)
12 PRK07534 methionine synthase I 100.0 1.6E-54 3.5E-59 451.7 31.5 266 5-308 12-292 (336)
13 PRK08645 bifunctional homocyst 100.0 1E-53 2.3E-58 479.8 33.1 366 5-462 10-395 (612)
14 COG2040 MHT1 Homocysteine/sele 100.0 5.4E-54 1.2E-58 422.2 26.4 274 5-308 8-295 (300)
15 PF02574 S-methyl_trans: Homoc 100.0 7.6E-56 1.7E-60 459.7 6.2 278 7-308 1-302 (305)
16 PRK09490 metH B12-dependent me 100.0 7E-53 1.5E-57 492.1 30.6 291 263-579 17-335 (1229)
17 PRK09490 metH B12-dependent me 100.0 7.6E-53 1.6E-57 491.9 30.2 280 5-308 17-327 (1229)
18 TIGR02082 metH 5-methyltetrahy 100.0 3.2E-52 7E-57 488.5 31.2 290 262-579 2-319 (1178)
19 TIGR02082 metH 5-methyltetrahy 100.0 5E-52 1.1E-56 486.9 30.2 280 4-309 2-312 (1178)
20 PRK08645 bifunctional homocyst 100.0 4E-52 8.7E-57 467.0 27.5 276 262-578 9-291 (612)
21 cd00945 Aldolase_Class_I Class 94.3 2.3 5.1E-05 40.4 16.0 140 409-572 14-169 (201)
22 PF03437 BtpA: BtpA family; I 93.3 6.1 0.00013 40.1 17.2 59 395-455 18-87 (254)
23 cd00377 ICL_PEPM Members of th 92.6 1.9 4E-05 43.6 12.5 42 154-199 162-203 (243)
24 cd00377 ICL_PEPM Members of th 92.0 2 4.4E-05 43.3 11.9 104 411-520 87-206 (243)
25 cd04729 NanE N-acetylmannosami 91.7 5.5 0.00012 39.3 14.6 89 154-258 81-181 (219)
26 cd04823 ALAD_PBGS_aspartate_ri 91.5 8.2 0.00018 40.1 15.5 185 349-554 95-307 (320)
27 PRK00311 panB 3-methyl-2-oxobu 91.4 2.2 4.7E-05 43.6 11.4 116 118-259 77-201 (264)
28 cd00951 KDGDH 5-dehydro-4-deox 91.3 6.6 0.00014 40.6 15.2 116 119-261 4-132 (289)
29 TIGR00222 panB 3-methyl-2-oxob 91.3 3.1 6.8E-05 42.4 12.3 160 51-259 31-200 (263)
30 cd06557 KPHMT-like Ketopantoat 91.3 6 0.00013 40.2 14.4 97 412-517 95-200 (254)
31 PRK05458 guanosine 5'-monophos 91.3 4.1 8.9E-05 42.9 13.6 84 154-251 98-199 (326)
32 TIGR01163 rpe ribulose-phospha 90.8 10 0.00022 36.7 15.3 52 408-459 11-67 (210)
33 cd00384 ALAD_PBGS Porphobilino 90.7 11 0.00023 39.2 15.4 185 349-554 90-302 (314)
34 PLN02591 tryptophan synthase 90.6 8.4 0.00018 39.1 14.8 94 154-259 95-194 (250)
35 TIGR01037 pyrD_sub1_fam dihydr 90.6 3.3 7.2E-05 42.9 12.3 94 159-262 29-165 (300)
36 cd06557 KPHMT-like Ketopantoat 90.6 5.2 0.00011 40.7 13.2 117 117-259 73-198 (254)
37 cd00408 DHDPS-like Dihydrodipi 90.5 3.7 8E-05 42.0 12.4 105 144-262 14-131 (281)
38 PRK09283 delta-aminolevulinic 90.4 11 0.00024 39.2 15.4 185 349-554 98-310 (323)
39 TIGR00683 nanA N-acetylneurami 90.3 4 8.6E-05 42.3 12.5 107 144-263 17-137 (290)
40 PLN02274 inosine-5'-monophosph 90.3 4.3 9.4E-05 45.4 13.5 80 116-233 235-316 (505)
41 PRK01130 N-acetylmannosamine-6 90.2 9.2 0.0002 37.7 14.6 89 154-258 77-177 (221)
42 TIGR02320 PEP_mutase phosphoen 90.2 6.1 0.00013 40.8 13.6 122 154-283 94-235 (285)
43 cd04824 eu_ALAD_PBGS_cysteine_ 89.8 14 0.00031 38.4 15.5 187 349-554 93-308 (320)
44 PRK06852 aldolase; Validated 89.8 4.7 0.0001 42.0 12.3 102 412-522 63-181 (304)
45 cd02801 DUS_like_FMN Dihydrour 89.7 5.9 0.00013 39.1 12.8 91 420-520 22-133 (231)
46 PRK13384 delta-aminolevulinic 89.6 14 0.00029 38.5 15.2 185 349-554 100-311 (322)
47 COG0329 DapA Dihydrodipicolina 89.5 5.1 0.00011 41.7 12.5 105 144-262 21-138 (299)
48 PRK03620 5-dehydro-4-deoxygluc 89.5 9.9 0.00022 39.6 14.7 117 119-262 11-140 (303)
49 PRK07565 dihydroorotate dehydr 89.4 3.4 7.3E-05 43.7 11.3 75 177-261 86-172 (334)
50 PF00490 ALAD: Delta-aminolevu 89.3 13 0.00028 38.8 14.8 187 349-554 98-312 (324)
51 PF00701 DHDPS: Dihydrodipicol 89.2 3.5 7.6E-05 42.5 11.1 118 119-262 5-135 (289)
52 PRK06843 inosine 5-monophospha 89.2 4.5 9.7E-05 43.9 12.0 79 117-233 141-221 (404)
53 cd00408 DHDPS-like Dihydrodipi 89.1 4.3 9.3E-05 41.6 11.6 102 408-519 18-132 (281)
54 PRK10415 tRNA-dihydrouridine s 89.1 5.6 0.00012 41.8 12.6 92 419-520 31-143 (321)
55 PRK15452 putative protease; Pr 89.0 19 0.00041 39.7 17.0 132 412-571 14-155 (443)
56 cd00952 CHBPH_aldolase Trans-o 89.0 6.5 0.00014 41.1 13.0 105 144-262 25-143 (309)
57 PRK07259 dihydroorotate dehydr 88.9 20 0.00044 37.1 16.6 82 447-553 90-185 (301)
58 PRK00311 panB 3-methyl-2-oxobu 88.8 7.8 0.00017 39.6 12.9 97 411-516 97-202 (264)
59 TIGR03249 KdgD 5-dehydro-4-deo 88.7 5.8 0.00012 41.2 12.3 116 119-261 9-137 (296)
60 cd04740 DHOD_1B_like Dihydroor 88.6 12 0.00026 38.7 14.5 138 408-574 102-279 (296)
61 PRK05581 ribulose-phosphate 3- 88.3 14 0.00031 36.0 14.3 146 410-570 18-189 (220)
62 cd02810 DHOD_DHPD_FMN Dihydroo 88.3 2.8 6.1E-05 43.1 9.7 62 191-262 97-170 (289)
63 cd02803 OYE_like_FMN_family Ol 88.3 33 0.00071 35.9 17.8 115 142-259 128-286 (327)
64 cd04740 DHOD_1B_like Dihydroor 88.1 5.5 0.00012 41.2 11.6 61 191-261 88-161 (296)
65 PF00701 DHDPS: Dihydrodipicol 88.1 4.9 0.00011 41.4 11.2 102 408-519 22-136 (289)
66 PRK12581 oxaloacetate decarbox 87.9 29 0.00063 38.4 17.4 104 148-262 104-214 (468)
67 TIGR00683 nanA N-acetylneurami 87.7 6.1 0.00013 40.9 11.7 102 409-519 22-137 (290)
68 PRK13384 delta-aminolevulinic 87.6 39 0.00084 35.3 17.1 226 42-317 61-314 (322)
69 cd02810 DHOD_DHPD_FMN Dihydroo 87.6 7.4 0.00016 40.0 12.2 85 447-554 97-193 (289)
70 PRK03620 5-dehydro-4-deoxygluc 87.5 6.5 0.00014 41.0 11.8 106 400-520 24-142 (303)
71 TIGR01463 mtaA_cmuA methyltran 87.4 18 0.00038 38.2 15.3 143 407-576 179-339 (340)
72 TIGR02317 prpB methylisocitrat 87.3 15 0.00033 38.0 14.1 44 154-201 163-206 (285)
73 PRK07259 dihydroorotate dehydr 87.3 8.5 0.00019 39.9 12.5 61 192-262 91-165 (301)
74 TIGR00674 dapA dihydrodipicoli 87.2 8.3 0.00018 39.7 12.3 106 143-262 14-132 (285)
75 cd02940 DHPD_FMN Dihydropyrimi 87.1 2.7 5.8E-05 43.7 8.6 63 191-262 98-176 (299)
76 TIGR03217 4OH_2_O_val_ald 4-hy 87.0 39 0.00085 35.8 17.4 96 158-260 93-194 (333)
77 PRK15063 isocitrate lyase; Pro 87.0 7.7 0.00017 42.2 12.0 35 154-189 267-302 (428)
78 TIGR02320 PEP_mutase phosphoen 87.0 14 0.0003 38.2 13.6 105 411-518 95-219 (285)
79 TIGR00262 trpA tryptophan synt 86.8 21 0.00045 36.4 14.7 153 410-571 26-219 (256)
80 cd00952 CHBPH_aldolase Trans-o 86.8 9.1 0.0002 40.0 12.4 103 408-519 29-144 (309)
81 PRK13111 trpA tryptophan synth 86.7 33 0.00071 35.0 16.0 91 156-259 108-205 (258)
82 PF03437 BtpA: BtpA family; I 86.4 3.1 6.8E-05 42.2 8.3 32 146-177 23-54 (254)
83 cd00950 DHDPS Dihydrodipicolin 86.3 10 0.00022 39.0 12.4 106 143-262 16-134 (284)
84 TIGR01037 pyrD_sub1_fam dihydr 86.3 15 0.00032 38.1 13.7 120 412-554 26-186 (300)
85 cd08205 RuBisCO_IV_RLP Ribulos 86.2 21 0.00046 38.3 15.1 104 401-519 143-256 (367)
86 cd06556 ICL_KPHMT Members of t 86.1 18 0.00039 36.4 13.6 151 412-573 23-191 (240)
87 TIGR02127 pyrF_sub2 orotidine 86.0 17 0.00038 37.0 13.6 181 374-572 15-208 (261)
88 cd04733 OYE_like_2_FMN Old yel 86.0 36 0.00078 35.9 16.7 90 142-233 136-255 (338)
89 PRK12331 oxaloacetate decarbox 85.8 62 0.0013 35.8 19.4 98 158-261 102-204 (448)
90 cd00954 NAL N-Acetylneuraminic 85.6 12 0.00025 38.7 12.4 105 144-262 17-136 (288)
91 cd00951 KDGDH 5-dehydro-4-deox 85.6 10 0.00022 39.2 11.9 106 400-520 17-135 (289)
92 cd04722 TIM_phosphate_binding 85.5 5.7 0.00012 37.2 9.5 103 152-262 12-122 (200)
93 PF01208 URO-D: Uroporphyrinog 85.5 18 0.00039 38.0 14.1 143 404-575 178-343 (343)
94 PRK00865 glutamate racemase; P 85.4 18 0.00039 36.8 13.5 138 400-558 46-186 (261)
95 cd02930 DCR_FMN 2,4-dienoyl-Co 85.4 55 0.0012 34.8 19.0 114 143-259 125-281 (353)
96 TIGR00737 nifR3_yhdG putative 85.3 4 8.8E-05 42.8 9.0 90 163-262 29-139 (319)
97 cd02940 DHPD_FMN Dihydropyrimi 85.1 18 0.00039 37.6 13.6 61 448-517 99-175 (299)
98 PRK11320 prpB 2-methylisocitra 85.0 16 0.00035 37.9 12.9 43 154-200 168-210 (292)
99 CHL00200 trpA tryptophan synth 85.0 28 0.00061 35.5 14.6 94 154-259 108-207 (263)
100 TIGR01858 tag_bisphos_ald clas 84.9 51 0.0011 34.1 19.0 204 158-476 8-220 (282)
101 PRK09195 gatY tagatose-bisphos 84.9 52 0.0011 34.1 19.2 217 157-491 9-233 (284)
102 PF00490 ALAD: Delta-aminolevu 84.8 43 0.00093 35.0 15.7 229 42-317 57-315 (324)
103 PRK09250 fructose-bisphosphate 84.7 8.8 0.00019 40.6 10.9 135 412-565 95-245 (348)
104 cd00945 Aldolase_Class_I Class 84.7 9.3 0.0002 36.2 10.6 98 152-262 13-121 (201)
105 PRK04147 N-acetylneuraminate l 84.6 12 0.00027 38.6 12.1 105 143-261 19-137 (293)
106 PRK09282 pyruvate carboxylase 84.6 76 0.0016 36.4 19.2 97 159-261 103-204 (592)
107 PRK03170 dihydrodipicolinate s 84.5 12 0.00026 38.6 12.0 106 143-262 17-135 (292)
108 TIGR03249 KdgD 5-dehydro-4-deo 84.4 12 0.00026 38.8 11.9 101 409-520 27-140 (296)
109 cd00465 URO-D_CIMS_like The UR 84.3 53 0.0011 33.8 16.9 143 404-573 140-305 (306)
110 cd00950 DHDPS Dihydrodipicolin 84.3 10 0.00022 38.9 11.3 104 400-519 17-135 (284)
111 PLN02424 ketopantoate hydroxym 84.1 18 0.0004 38.0 12.8 118 117-259 96-222 (332)
112 PLN02417 dihydrodipicolinate s 83.8 28 0.0006 35.8 14.2 114 119-260 5-131 (280)
113 TIGR01769 GGGP geranylgeranylg 83.8 20 0.00044 35.2 12.4 81 212-310 12-95 (205)
114 COG0329 DapA Dihydrodipicolina 83.7 13 0.00029 38.6 11.8 103 408-520 25-140 (299)
115 COG1646 Predicted phosphate-bi 83.6 31 0.00068 34.4 13.5 62 196-265 16-81 (240)
116 TIGR00737 nifR3_yhdG putative 83.6 11 0.00023 39.5 11.3 93 418-520 28-141 (319)
117 TIGR01769 GGGP geranylgeranylg 83.4 48 0.001 32.6 14.8 148 408-572 11-175 (205)
118 PRK07565 dihydroorotate dehydr 83.4 13 0.00028 39.2 11.9 76 433-518 86-173 (334)
119 PF01116 F_bP_aldolase: Fructo 83.3 57 0.0012 33.8 16.2 217 156-491 7-236 (287)
120 TIGR02313 HpaI-NOT-DapA 2,4-di 82.9 18 0.00039 37.5 12.4 104 143-260 16-133 (294)
121 PRK15063 isocitrate lyase; Pro 82.8 43 0.00093 36.5 15.3 133 412-554 165-343 (428)
122 PRK05286 dihydroorotate dehydr 82.8 33 0.00072 36.4 14.6 124 412-551 73-239 (344)
123 PRK05567 inosine 5'-monophosph 82.7 16 0.00034 40.8 12.7 65 155-233 230-296 (486)
124 PRK10415 tRNA-dihydrouridine s 82.6 8.9 0.00019 40.3 10.1 92 163-264 31-143 (321)
125 PRK05286 dihydroorotate dehydr 82.6 11 0.00025 39.9 11.0 103 157-262 74-219 (344)
126 TIGR01302 IMP_dehydrog inosine 82.5 19 0.00041 39.7 13.1 67 154-234 225-293 (450)
127 PRK13523 NADPH dehydrogenase N 82.2 73 0.0016 33.8 19.3 152 143-305 130-318 (337)
128 cd08210 RLP_RrRLP Ribulose bis 81.7 47 0.001 35.6 15.2 116 373-519 126-252 (364)
129 cd00954 NAL N-Acetylneuraminic 81.7 17 0.00037 37.5 11.7 103 408-519 21-137 (288)
130 cd04734 OYE_like_3_FMN Old yel 81.6 76 0.0017 33.6 20.5 94 142-235 128-250 (343)
131 TIGR00222 panB 3-methyl-2-oxob 81.6 29 0.00063 35.4 12.9 115 373-515 76-200 (263)
132 PRK02506 dihydroorotate dehydr 81.5 7.4 0.00016 40.7 9.0 61 191-261 91-164 (310)
133 cd00953 KDG_aldolase KDG (2-ke 81.2 24 0.00052 36.3 12.5 100 144-260 16-127 (279)
134 PF00478 IMPDH: IMP dehydrogen 81.1 4.5 9.8E-05 43.0 7.2 57 117-197 96-154 (352)
135 cd07943 DRE_TIM_HOA 4-hydroxy- 80.9 68 0.0015 32.5 17.2 98 414-518 91-193 (263)
136 cd07937 DRE_TIM_PC_TC_5S Pyruv 80.8 71 0.0015 32.7 18.1 101 412-518 95-200 (275)
137 cd00429 RPE Ribulose-5-phospha 80.7 49 0.0011 31.8 14.1 50 410-459 14-68 (211)
138 cd00537 MTHFR Methylenetetrahy 80.6 70 0.0015 32.6 15.9 155 413-572 20-211 (274)
139 cd07937 DRE_TIM_PC_TC_5S Pyruv 80.5 38 0.00081 34.8 13.7 98 157-260 96-198 (275)
140 PRK12677 xylose isomerase; Pro 80.5 56 0.0012 35.3 15.5 155 43-234 68-244 (384)
141 PRK13111 trpA tryptophan synth 80.4 66 0.0014 32.8 15.2 154 410-573 28-223 (258)
142 KOG2335|consensus 80.3 2.4 5.1E-05 44.7 4.7 39 192-240 73-111 (358)
143 COG5016 Pyruvate/oxaloacetate 80.3 25 0.00054 37.9 12.1 104 148-262 97-207 (472)
144 TIGR00674 dapA dihydrodipicoli 80.0 17 0.00037 37.4 11.0 102 408-519 19-133 (285)
145 PRK02412 aroD 3-dehydroquinate 79.9 16 0.00034 37.1 10.6 102 412-519 99-206 (253)
146 COG0113 HemB Delta-aminolevuli 79.8 72 0.0016 33.2 14.9 186 349-554 102-315 (330)
147 cd04739 DHOD_like Dihydroorota 79.8 11 0.00024 39.6 9.7 60 192-261 99-170 (325)
148 PRK03170 dihydrodipicolinate s 79.7 20 0.00043 37.0 11.4 101 408-518 22-135 (292)
149 PRK04147 N-acetylneuraminate l 79.7 15 0.00033 38.0 10.6 102 408-519 24-139 (293)
150 PRK05692 hydroxymethylglutaryl 79.7 36 0.00078 35.2 13.2 134 52-231 89-228 (287)
151 PRK14042 pyruvate carboxylase 79.7 27 0.00058 40.0 13.2 106 148-262 95-205 (596)
152 cd02930 DCR_FMN 2,4-dienoyl-Co 79.6 35 0.00076 36.3 13.6 112 404-516 133-282 (353)
153 PRK08195 4-hyroxy-2-oxovalerat 78.9 93 0.002 33.0 18.9 96 158-260 94-195 (337)
154 cd00384 ALAD_PBGS Porphobilino 78.8 87 0.0019 32.7 15.3 227 41-317 50-305 (314)
155 PLN02591 tryptophan synthase 78.7 49 0.0011 33.5 13.5 156 409-571 17-210 (250)
156 cd04722 TIM_phosphate_binding 78.3 15 0.00032 34.4 9.3 104 408-519 12-123 (200)
157 cd00947 TBP_aldolase_IIB Tagat 78.2 87 0.0019 32.3 18.9 199 159-476 6-216 (276)
158 cd07938 DRE_TIM_HMGL 3-hydroxy 77.9 46 0.00099 34.2 13.3 102 412-518 77-201 (274)
159 TIGR02313 HpaI-NOT-DapA 2,4-di 77.8 22 0.00048 36.8 11.1 105 400-519 17-136 (294)
160 COG0821 gcpE 1-hydroxy-2-methy 77.8 14 0.00029 38.8 9.1 82 409-494 37-135 (361)
161 cd04738 DHOD_2_like Dihydrooro 77.7 25 0.00053 37.1 11.6 101 157-261 64-209 (327)
162 TIGR01108 oadA oxaloacetate de 77.7 1.4E+02 0.003 34.3 19.8 98 158-261 97-199 (582)
163 cd00958 DhnA Class I fructose- 77.6 67 0.0014 31.8 14.2 120 412-552 80-209 (235)
164 cd00331 IGPS Indole-3-glycerol 77.5 60 0.0013 31.7 13.7 62 157-234 86-148 (217)
165 cd04734 OYE_like_3_FMN Old yel 77.4 46 0.001 35.3 13.6 92 400-491 130-250 (343)
166 PRK02412 aroD 3-dehydroquinate 77.1 34 0.00073 34.7 11.9 103 153-261 96-204 (253)
167 TIGR02317 prpB methylisocitrat 77.0 49 0.0011 34.2 13.2 98 412-518 92-205 (285)
168 COG0821 gcpE 1-hydroxy-2-methy 76.9 26 0.00057 36.7 10.9 116 152-305 36-154 (361)
169 cd04728 ThiG Thiazole synthase 76.9 64 0.0014 32.6 13.4 78 157-247 136-222 (248)
170 PRK00115 hemE uroporphyrinogen 76.8 57 0.0012 34.5 14.1 139 408-575 186-344 (346)
171 PRK08508 biotin synthase; Prov 76.7 60 0.0013 33.3 13.9 17 155-171 102-118 (279)
172 cd03465 URO-D_like The URO-D _ 76.6 81 0.0018 32.8 15.2 143 404-573 164-329 (330)
173 PRK14042 pyruvate carboxylase 76.5 42 0.0009 38.5 13.5 97 416-518 104-205 (596)
174 cd06556 ICL_KPHMT Members of t 76.3 17 0.00038 36.6 9.4 96 412-516 93-197 (240)
175 cd02911 arch_FMN Archeal FMN-b 76.3 26 0.00057 35.0 10.7 91 159-264 42-149 (233)
176 cd02801 DUS_like_FMN Dihydrour 76.1 23 0.0005 34.8 10.4 97 153-262 14-131 (231)
177 TIGR01768 GGGP-family geranylg 76.1 60 0.0013 32.3 13.0 78 216-312 19-99 (223)
178 TIGR00259 thylakoid_BtpA membr 76.0 15 0.00031 37.5 8.8 33 145-177 21-53 (257)
179 cd03174 DRE_TIM_metallolyase D 76.0 45 0.00097 33.4 12.6 100 156-260 78-196 (265)
180 cd02911 arch_FMN Archeal FMN-b 75.9 71 0.0015 31.9 13.8 130 412-570 39-187 (233)
181 cd00958 DhnA Class I fructose- 75.8 28 0.00061 34.5 10.9 94 156-259 80-184 (235)
182 cd07944 DRE_TIM_HOA_like 4-hyd 75.8 44 0.00095 34.1 12.4 95 158-260 88-189 (266)
183 PRK10550 tRNA-dihydrouridine s 75.7 75 0.0016 33.3 14.4 121 410-553 16-164 (312)
184 PF02219 MTHFR: Methylenetetra 75.7 11 0.00025 38.8 8.2 73 371-462 9-84 (287)
185 TIGR01463 mtaA_cmuA methyltran 75.6 58 0.0013 34.2 13.8 83 157-249 247-336 (340)
186 PRK06843 inosine 5-monophospha 75.5 27 0.00058 38.0 11.1 80 372-489 140-221 (404)
187 PLN02417 dihydrodipicolinate s 75.4 27 0.00058 35.9 10.9 97 409-519 23-134 (280)
188 PRK14041 oxaloacetate decarbox 75.2 1.4E+02 0.0031 33.2 19.1 177 40-262 23-204 (467)
189 PRK12330 oxaloacetate decarbox 75.2 44 0.00095 37.4 13.0 98 158-262 103-208 (499)
190 TIGR03128 RuMP_HxlA 3-hexulose 75.2 81 0.0018 30.4 13.9 66 413-490 68-133 (206)
191 TIGR00262 trpA tryptophan synt 75.1 1E+02 0.0022 31.4 17.0 91 154-256 104-200 (256)
192 TIGR00612 ispG_gcpE 1-hydroxy- 75.1 22 0.00047 37.4 9.9 82 408-493 34-132 (346)
193 cd07943 DRE_TIM_HOA 4-hydroxy- 75.0 52 0.0011 33.4 12.8 87 158-251 91-182 (263)
194 cd08205 RuBisCO_IV_RLP Ribulos 74.9 16 0.00034 39.3 9.2 98 153-263 147-256 (367)
195 cd02932 OYE_YqiM_FMN Old yello 74.4 1.2E+02 0.0026 31.9 19.6 115 142-259 141-295 (336)
196 cd00717 URO-D Uroporphyrinogen 74.4 1.2E+02 0.0025 31.9 15.7 137 408-573 177-334 (335)
197 TIGR00612 ispG_gcpE 1-hydroxy- 74.4 1.1E+02 0.0023 32.4 14.7 123 152-312 34-159 (346)
198 cd00452 KDPG_aldolase KDPG and 74.3 72 0.0016 30.6 13.0 113 412-565 67-179 (190)
199 PLN02540 methylenetetrahydrofo 74.2 90 0.0019 35.5 15.2 109 407-519 14-139 (565)
200 TIGR00742 yjbN tRNA dihydrouri 74.1 10 0.00022 39.9 7.4 98 154-264 16-133 (318)
201 TIGR01496 DHPS dihydropteroate 74.1 34 0.00074 34.8 11.1 38 31-68 12-49 (257)
202 PRK12737 gatY tagatose-bisphos 74.1 1E+02 0.0022 32.0 14.5 118 341-491 108-233 (284)
203 PRK06552 keto-hydroxyglutarate 74.1 53 0.0011 32.5 12.1 105 412-557 79-183 (213)
204 PRK14040 oxaloacetate decarbox 74.0 46 0.001 38.1 13.1 98 157-262 102-206 (593)
205 PRK06252 methylcobalamin:coenz 73.9 63 0.0014 33.9 13.5 84 157-250 245-335 (339)
206 PF02515 CoA_transf_3: CoA-tra 73.8 10 0.00022 36.7 6.9 58 36-129 3-60 (191)
207 PRK15452 putative protease; Pr 73.8 30 0.00066 38.1 11.3 97 156-264 14-120 (443)
208 COG2513 PrpB PEP phosphonomuta 73.8 5.1 0.00011 41.2 4.9 44 154-201 168-211 (289)
209 COG0113 HemB Delta-aminolevuli 73.7 1.2E+02 0.0026 31.6 15.1 228 42-317 61-318 (330)
210 cd04741 DHOD_1A_like Dihydroor 73.7 16 0.00035 37.8 8.8 63 191-261 90-164 (294)
211 PF01487 DHquinase_I: Type I 3 73.5 26 0.00057 34.5 9.9 103 152-261 75-181 (224)
212 PRK00366 ispG 4-hydroxy-3-meth 73.5 1.1E+02 0.0024 32.6 14.6 123 152-312 42-168 (360)
213 PLN02433 uroporphyrinogen deca 73.1 1.3E+02 0.0028 31.8 17.0 139 412-579 183-341 (345)
214 TIGR00259 thylakoid_BtpA membr 73.0 26 0.00056 35.7 9.7 55 401-455 21-86 (257)
215 PTZ00314 inosine-5'-monophosph 73.0 45 0.00097 37.4 12.6 63 155-231 243-307 (495)
216 COG0434 SgcQ Predicted TIM-bar 72.9 17 0.00037 36.3 8.1 54 402-455 28-92 (263)
217 PRK08318 dihydropyrimidine deh 72.8 16 0.00034 39.9 8.9 63 191-262 98-176 (420)
218 TIGR01235 pyruv_carbox pyruvat 72.8 43 0.00093 41.4 13.2 108 148-262 624-740 (1143)
219 TIGR01949 AroFGH_arch predicte 72.7 1.1E+02 0.0024 30.9 16.1 128 412-560 94-228 (258)
220 cd02803 OYE_like_FMN_family Ol 72.6 70 0.0015 33.3 13.4 87 403-491 136-249 (327)
221 PF00290 Trp_syntA: Tryptophan 72.5 1.1E+02 0.0024 31.2 14.2 162 40-259 22-203 (259)
222 PLN02424 ketopantoate hydroxym 72.4 39 0.00084 35.6 11.0 118 373-515 96-222 (332)
223 PRK11320 prpB 2-methylisocitra 72.4 66 0.0014 33.4 12.8 98 412-518 97-210 (292)
224 PRK06252 methylcobalamin:coenz 72.3 84 0.0018 33.0 14.0 43 533-575 290-336 (339)
225 COG0826 Collagenase and relate 72.2 27 0.00059 37.2 10.1 100 52-202 23-123 (347)
226 cd04732 HisA HisA. Phosphorib 72.2 49 0.0011 32.6 11.6 99 412-515 86-195 (234)
227 cd03307 Mta_CmuA_like MtaA_Cmu 72.1 31 0.00066 36.2 10.6 69 158-236 237-307 (326)
228 TIGR03128 RuMP_HxlA 3-hexulose 72.0 80 0.0017 30.4 12.9 94 412-519 16-112 (206)
229 PRK05458 guanosine 5'-monophos 71.8 39 0.00084 35.7 11.1 90 411-516 99-207 (326)
230 PF00682 HMGL-like: HMGL-like 71.8 35 0.00077 33.8 10.5 97 158-261 73-188 (237)
231 PRK00125 pyrF orotidine 5'-pho 71.7 63 0.0014 33.3 12.3 182 374-574 15-212 (278)
232 TIGR02319 CPEP_Pphonmut carbox 71.7 25 0.00053 36.6 9.4 44 154-201 167-210 (294)
233 PRK01130 N-acetylmannosamine-6 71.5 25 0.00054 34.6 9.2 88 412-515 79-178 (221)
234 PRK13397 3-deoxy-7-phosphohept 71.5 86 0.0019 31.8 13.0 159 37-262 24-192 (250)
235 cd03174 DRE_TIM_metallolyase D 71.5 70 0.0015 32.0 12.7 102 412-518 78-198 (265)
236 PLN02389 biotin synthase 71.3 1.3E+02 0.0028 32.4 15.2 18 156-173 179-198 (379)
237 TIGR01163 rpe ribulose-phospha 71.2 66 0.0014 30.9 12.1 88 152-251 11-103 (210)
238 PRK14040 oxaloacetate decarbox 70.8 58 0.0013 37.3 13.0 100 413-518 102-206 (593)
239 cd04738 DHOD_2_like Dihydrooro 70.7 83 0.0018 33.1 13.4 125 412-552 63-231 (327)
240 PRK06015 keto-hydroxyglutarate 70.3 83 0.0018 30.8 12.3 103 412-556 67-171 (201)
241 PTZ00314 inosine-5'-monophosph 70.2 34 0.00073 38.3 10.8 65 157-235 295-374 (495)
242 PRK07315 fructose-bisphosphate 70.1 1.4E+02 0.0031 31.0 19.1 47 213-264 6-52 (293)
243 cd00953 KDG_aldolase KDG (2-ke 70.0 57 0.0012 33.5 11.8 103 400-519 16-130 (279)
244 PLN02495 oxidoreductase, actin 69.9 18 0.0004 39.0 8.3 64 189-261 110-189 (385)
245 cd07938 DRE_TIM_HMGL 3-hydroxy 69.5 82 0.0018 32.3 12.7 98 158-260 79-199 (274)
246 PF01487 DHquinase_I: Type I 3 69.3 26 0.00056 34.6 8.8 105 408-519 75-183 (224)
247 PRK05437 isopentenyl pyrophosp 69.3 37 0.0008 36.2 10.5 110 436-567 107-229 (352)
248 cd00502 DHQase_I Type I 3-dehy 69.2 40 0.00086 33.3 10.1 101 411-519 79-183 (225)
249 PRK05692 hydroxymethylglutaryl 69.2 96 0.0021 32.1 13.2 97 159-260 86-205 (287)
250 TIGR00007 phosphoribosylformim 68.9 71 0.0015 31.4 11.9 102 412-515 85-194 (230)
251 cd03309 CmuC_like CmuC_like. P 68.7 94 0.002 32.7 13.2 137 412-573 159-320 (321)
252 cd02932 OYE_YqiM_FMN Old yello 68.7 66 0.0014 33.9 12.2 113 400-515 143-295 (336)
253 PRK13587 1-(5-phosphoribosyl)- 68.6 65 0.0014 32.2 11.5 99 412-516 89-198 (234)
254 cd04726 KGPDC_HPS 3-Keto-L-gul 68.6 62 0.0013 31.0 11.2 64 157-234 69-133 (202)
255 TIGR02660 nifV_homocitr homoci 68.2 58 0.0012 34.9 11.8 95 158-260 78-191 (365)
256 COG5016 Pyruvate/oxaloacetate 68.2 30 0.00064 37.4 9.1 53 405-457 153-208 (472)
257 TIGR01302 IMP_dehydrog inosine 68.0 83 0.0018 34.8 13.2 64 412-489 227-292 (450)
258 PRK11613 folP dihydropteroate 68.0 1.2E+02 0.0025 31.5 13.4 169 373-573 14-205 (282)
259 PRK06801 hypothetical protein; 68.0 1.6E+02 0.0034 30.6 24.1 73 158-262 10-82 (286)
260 TIGR00742 yjbN tRNA dihydrouri 67.9 68 0.0015 33.7 12.0 116 420-554 23-158 (318)
261 COG5309 Exo-beta-1,3-glucanase 67.9 33 0.00072 35.0 9.0 33 400-432 252-284 (305)
262 TIGR01182 eda Entner-Doudoroff 67.9 74 0.0016 31.3 11.4 109 412-562 71-181 (204)
263 TIGR02321 Pphn_pyruv_hyd phosp 67.4 1.6E+02 0.0035 30.5 15.1 125 433-574 60-204 (290)
264 cd04732 HisA HisA. Phosphorib 67.1 63 0.0014 31.8 11.2 96 157-259 87-195 (234)
265 PRK12581 oxaloacetate decarbox 67.1 2.1E+02 0.0046 31.8 21.4 51 406-456 161-214 (468)
266 cd02931 ER_like_FMN Enoate red 67.0 82 0.0018 34.0 12.7 22 42-63 143-171 (382)
267 cd00502 DHQase_I Type I 3-dehy 67.0 80 0.0017 31.2 11.8 102 152-261 76-181 (225)
268 TIGR01093 aroD 3-dehydroquinat 66.8 60 0.0013 32.2 10.9 96 418-519 89-188 (228)
269 PLN02746 hydroxymethylglutaryl 66.7 98 0.0021 33.0 12.9 135 52-231 131-270 (347)
270 cd04739 DHOD_like Dihydroorota 66.5 57 0.0012 34.3 11.1 62 447-518 98-171 (325)
271 PRK00366 ispG 4-hydroxy-3-meth 66.4 74 0.0016 33.8 11.6 121 408-547 42-166 (360)
272 PRK13587 1-(5-phosphoribosyl)- 66.1 77 0.0017 31.7 11.5 96 157-260 90-198 (234)
273 cd03465 URO-D_like The URO-D _ 66.0 93 0.002 32.3 12.7 73 157-236 235-311 (330)
274 PLN02274 inosine-5'-monophosph 65.9 64 0.0014 36.2 11.9 80 372-489 235-316 (505)
275 cd07940 DRE_TIM_IPMS 2-isoprop 65.8 1.6E+02 0.0034 29.9 14.9 43 534-577 140-186 (268)
276 COG0796 MurI Glutamate racemas 65.8 90 0.0019 32.0 11.8 90 400-506 46-136 (269)
277 COG0107 HisF Imidazoleglycerol 65.8 1.1E+02 0.0024 30.6 12.0 97 159-260 90-205 (256)
278 cd04724 Tryptophan_synthase_al 65.6 1.5E+02 0.0033 29.6 17.5 86 155-251 94-185 (242)
279 PF13714 PEP_mutase: Phosphoen 65.0 78 0.0017 31.9 11.2 126 433-573 54-191 (238)
280 cd00381 IMPDH IMPDH: The catal 64.8 1E+02 0.0022 32.5 12.6 66 154-233 95-162 (325)
281 PRK08673 3-deoxy-7-phosphohept 64.4 1.9E+02 0.0042 30.6 14.5 160 36-264 101-272 (335)
282 TIGR02319 CPEP_Pphonmut carbox 64.3 64 0.0014 33.6 10.7 88 412-503 96-199 (294)
283 COG0413 PanB Ketopantoate hydr 64.2 1.3E+02 0.0028 30.7 12.3 83 407-493 93-184 (268)
284 cd04735 OYE_like_4_FMN Old yel 64.1 84 0.0018 33.4 12.0 89 403-491 139-256 (353)
285 cd07947 DRE_TIM_Re_CS Clostrid 63.7 1.4E+02 0.003 30.8 13.0 129 52-221 84-226 (279)
286 PRK08610 fructose-bisphosphate 63.6 1.9E+02 0.0041 30.0 14.1 157 211-427 4-175 (286)
287 PRK12999 pyruvate carboxylase; 63.5 85 0.0018 39.0 13.2 101 158-262 633-742 (1146)
288 PF06187 DUF993: Protein of un 63.5 24 0.00053 37.0 7.3 126 74-235 85-228 (382)
289 cd04723 HisA_HisF Phosphoribos 63.3 93 0.002 31.0 11.5 102 412-517 91-196 (233)
290 cd04733 OYE_like_2_FMN Old yel 63.2 66 0.0014 33.9 11.0 88 400-489 138-255 (338)
291 PRK13125 trpA tryptophan synth 63.1 1.2E+02 0.0027 30.3 12.4 91 412-513 92-188 (244)
292 TIGR00167 cbbA ketose-bisphosp 63.1 1.9E+02 0.0042 29.9 19.4 44 156-201 8-51 (288)
293 PRK08195 4-hyroxy-2-oxovalerat 62.5 1.6E+02 0.0034 31.3 13.5 99 413-518 93-197 (337)
294 TIGR00007 phosphoribosylformim 62.4 84 0.0018 30.9 11.0 94 156-258 85-193 (230)
295 PRK07094 biotin synthase; Prov 62.4 40 0.00087 35.2 9.1 13 238-250 194-206 (323)
296 cd03307 Mta_CmuA_like MtaA_Cmu 62.3 2E+02 0.0044 29.9 14.8 41 533-573 281-325 (326)
297 TIGR00736 nifR3_rel_arch TIM-b 62.3 52 0.0011 33.0 9.3 61 192-264 67-144 (231)
298 PRK05718 keto-hydroxyglutarate 61.8 78 0.0017 31.3 10.4 102 412-556 78-182 (212)
299 PRK10550 tRNA-dihydrouridine s 61.8 24 0.00053 36.9 7.2 100 154-264 16-143 (312)
300 cd04823 ALAD_PBGS_aspartate_ri 61.8 2.1E+02 0.0046 30.0 15.5 228 42-317 54-310 (320)
301 TIGR01093 aroD 3-dehydroquinat 61.6 1.1E+02 0.0024 30.3 11.6 94 162-261 89-186 (228)
302 PRK09283 delta-aminolevulinic 61.6 2.2E+02 0.0047 30.0 17.2 227 42-317 59-313 (323)
303 TIGR00735 hisF imidazoleglycer 61.5 1.8E+02 0.004 29.2 14.1 96 158-260 89-205 (254)
304 PLN02617 imidazole glycerol ph 61.4 99 0.0021 35.0 12.3 102 155-260 337-488 (538)
305 PF13714 PEP_mutase: Phosphoen 61.2 26 0.00057 35.2 7.0 48 148-199 151-198 (238)
306 cd04726 KGPDC_HPS 3-Keto-L-gul 61.0 1.6E+02 0.0034 28.2 14.6 110 413-556 69-185 (202)
307 PF01729 QRPTase_C: Quinolinat 60.9 23 0.00051 33.6 6.3 66 156-235 91-156 (169)
308 PRK06256 biotin synthase; Vali 60.9 1.7E+02 0.0037 30.6 13.6 20 38-57 90-109 (336)
309 TIGR02321 Pphn_pyruv_hyd phosp 60.7 1.3E+02 0.0028 31.3 12.2 101 155-261 93-212 (290)
310 COG0159 TrpA Tryptophan syntha 60.3 2.1E+02 0.0045 29.4 14.2 178 40-247 29-226 (265)
311 cd04824 eu_ALAD_PBGS_cysteine_ 60.2 2.2E+02 0.0049 29.8 15.7 230 42-317 51-311 (320)
312 PRK05835 fructose-bisphosphate 60.2 2.3E+02 0.0049 29.8 14.7 127 341-491 108-256 (307)
313 COG2224 AceA Isocitrate lyase 60.1 59 0.0013 35.1 9.5 29 165-193 283-313 (433)
314 PRK12858 tagatose 1,6-diphosph 59.7 1.9E+02 0.004 30.8 13.4 75 153-236 185-276 (340)
315 cd07944 DRE_TIM_HOA_like 4-hyd 59.6 1.3E+02 0.0028 30.7 12.0 99 413-518 87-191 (266)
316 PRK15458 tagatose 6-phosphate 59.5 2.4E+02 0.0051 30.9 14.1 195 230-447 18-255 (426)
317 PF09587 PGA_cap: Bacterial ca 59.5 86 0.0019 31.4 10.6 57 497-566 173-229 (250)
318 cd07948 DRE_TIM_HCS Saccharomy 59.4 1.8E+02 0.0039 29.6 12.9 96 158-261 77-191 (262)
319 COG1038 PycA Pyruvate carboxyl 59.4 1E+02 0.0022 36.3 11.8 106 148-260 629-743 (1149)
320 PRK08185 hypothetical protein; 59.3 2.2E+02 0.0048 29.4 24.2 40 160-201 7-46 (283)
321 TIGR02810 agaZ_gatZ D-tagatose 59.1 2.5E+02 0.0054 30.7 14.1 192 235-447 19-251 (420)
322 cd07939 DRE_TIM_NifV Streptomy 58.8 2.1E+02 0.0045 28.9 13.3 64 152-221 139-205 (259)
323 cd00946 FBP_aldolase_IIA Class 58.8 2.5E+02 0.0055 29.9 17.0 134 322-491 123-276 (345)
324 PRK12857 fructose-1,6-bisphosp 58.5 2.3E+02 0.005 29.3 14.5 116 341-491 108-233 (284)
325 cd04735 OYE_like_4_FMN Old yel 58.5 1.2E+02 0.0026 32.3 11.9 93 143-235 132-256 (353)
326 PLN02520 bifunctional 3-dehydr 58.3 99 0.0022 34.9 11.8 97 154-260 99-198 (529)
327 TIGR01235 pyruv_carbox pyruvat 58.2 27 0.00059 43.1 7.7 52 405-456 686-740 (1143)
328 PF01081 Aldolase: KDPG and KH 57.8 1.3E+02 0.0029 29.3 11.0 106 412-557 71-176 (196)
329 COG0042 tRNA-dihydrouridine sy 57.6 51 0.0011 34.7 8.8 90 165-264 34-146 (323)
330 PRK04208 rbcL ribulose bisopho 57.4 2.9E+02 0.0062 30.8 14.8 153 401-573 173-343 (468)
331 COG2513 PrpB PEP phosphonomuta 57.2 17 0.00037 37.4 4.9 43 411-457 169-211 (289)
332 TIGR00736 nifR3_rel_arch TIM-b 57.0 2.2E+02 0.0047 28.6 14.2 61 448-520 67-144 (231)
333 PRK04208 rbcL ribulose bisopho 57.0 71 0.0015 35.5 10.0 102 154-264 178-291 (468)
334 PF04551 GcpE: GcpE protein; 57.0 30 0.00065 36.7 6.7 121 153-312 32-168 (359)
335 PF00478 IMPDH: IMP dehydrogen 56.9 35 0.00076 36.4 7.4 62 371-456 94-157 (352)
336 PRK05848 nicotinate-nucleotide 56.4 49 0.0011 34.0 8.2 66 156-236 193-259 (273)
337 PF02548 Pantoate_transf: Keto 56.3 2.2E+02 0.0049 29.0 12.7 127 354-514 65-201 (261)
338 PRK12738 kbaY tagatose-bisphos 56.3 2.5E+02 0.0054 29.1 19.5 117 341-491 108-233 (286)
339 COG5309 Exo-beta-1,3-glucanase 56.2 98 0.0021 31.7 9.9 34 144-177 252-285 (305)
340 PRK00748 1-(5-phosphoribosyl)- 56.0 1E+02 0.0022 30.4 10.3 98 412-515 87-195 (233)
341 cd04729 NanE N-acetylmannosami 56.0 84 0.0018 30.8 9.6 89 411-515 82-182 (219)
342 TIGR02631 xylA_Arthro xylose i 55.9 2.9E+02 0.0064 29.8 15.7 74 145-220 147-233 (382)
343 PRK00748 1-(5-phosphoribosyl)- 55.9 1E+02 0.0023 30.2 10.4 93 157-259 88-195 (233)
344 CHL00200 trpA tryptophan synth 55.8 93 0.002 31.8 10.1 125 410-574 31-169 (263)
345 PRK00865 glutamate racemase; P 55.8 39 0.00085 34.3 7.4 50 144-196 46-95 (261)
346 cd04724 Tryptophan_synthase_al 55.8 1.5E+02 0.0032 29.7 11.5 92 152-251 14-128 (242)
347 cd03311 CIMS_C_terminal_like C 55.5 2.7E+02 0.0057 29.1 15.7 144 403-561 150-312 (332)
348 PF00682 HMGL-like: HMGL-like 55.4 2.2E+02 0.0047 28.1 15.2 143 38-231 63-210 (237)
349 CHL00040 rbcL ribulose-1,5-bis 55.3 3.4E+02 0.0073 30.3 14.9 149 401-569 180-346 (475)
350 PRK11815 tRNA-dihydrouridine s 55.2 37 0.0008 35.9 7.3 95 153-260 25-139 (333)
351 smart00633 Glyco_10 Glycosyl h 54.9 1.1E+02 0.0024 30.7 10.6 52 151-203 135-194 (254)
352 TIGR03700 mena_SCO4494 putativ 54.9 18 0.00038 38.6 4.9 61 154-221 149-224 (351)
353 cd02933 OYE_like_FMN Old yello 54.8 1.8E+02 0.004 30.7 12.5 153 143-305 140-327 (338)
354 PRK11613 folP dihydropteroate 54.6 2.5E+02 0.0054 29.1 13.0 114 117-264 14-143 (282)
355 cd04723 HisA_HisF Phosphoribos 54.6 1.5E+02 0.0032 29.6 11.2 97 156-259 91-194 (233)
356 COG0279 GmhA Phosphoheptose is 54.6 47 0.001 31.5 6.9 89 117-207 43-150 (176)
357 PF01208 URO-D: Uroporphyrinog 54.5 2.2E+02 0.0048 29.7 13.1 85 157-249 248-341 (343)
358 COG0434 SgcQ Predicted TIM-bar 54.4 26 0.00055 35.2 5.4 32 146-177 28-59 (263)
359 PRK09282 pyruvate carboxylase 54.1 2.2E+02 0.0048 32.7 13.7 99 414-518 102-205 (592)
360 PRK13523 NADPH dehydrogenase N 53.7 2.5E+02 0.0053 29.8 13.2 111 403-516 137-281 (337)
361 PRK13585 1-(5-phosphoribosyl)- 53.4 1.5E+02 0.0034 29.2 11.2 103 412-516 89-199 (241)
362 COG0407 HemE Uroporphyrinogen- 53.2 3.1E+02 0.0068 29.3 15.5 144 407-578 188-351 (352)
363 cd01981 Pchlide_reductase_B Pc 53.2 48 0.001 36.2 8.1 27 464-492 99-125 (430)
364 PRK10128 2-keto-3-deoxy-L-rham 53.0 93 0.002 31.9 9.5 79 157-249 31-113 (267)
365 cd07939 DRE_TIM_NifV Streptomy 52.9 2.3E+02 0.005 28.6 12.5 95 158-260 75-188 (259)
366 KOG2949|consensus 52.8 1.5E+02 0.0032 29.6 10.2 95 407-504 116-219 (306)
367 PRK13396 3-deoxy-7-phosphohept 52.7 2.3E+02 0.0049 30.3 12.6 162 36-264 109-281 (352)
368 PRK15052 D-tagatose-1,6-bispho 52.4 3.5E+02 0.0075 29.6 14.1 174 228-423 13-210 (421)
369 TIGR01108 oadA oxaloacetate de 52.2 2.6E+02 0.0057 32.0 13.9 99 414-518 97-200 (582)
370 KOG2335|consensus 52.2 67 0.0015 34.1 8.4 103 448-574 73-200 (358)
371 PRK12331 oxaloacetate decarbox 52.2 2E+02 0.0044 31.8 12.6 100 413-518 101-205 (448)
372 TIGR01740 pyrF orotidine 5'-ph 52.0 2E+02 0.0042 28.2 11.5 116 437-573 39-157 (213)
373 TIGR03572 WbuZ glycosyl amidat 51.8 1.8E+02 0.0039 28.6 11.3 48 412-460 87-134 (232)
374 cd02933 OYE_like_FMN Old yello 51.8 2.5E+02 0.0055 29.6 13.0 113 403-516 147-291 (338)
375 PRK11430 putative CoA-transfer 51.7 36 0.00079 36.7 6.7 59 35-129 75-133 (381)
376 PLN02334 ribulose-phosphate 3- 51.6 2.3E+02 0.0051 27.9 12.1 149 407-571 19-194 (229)
377 PLN02746 hydroxymethylglutaryl 51.5 3.1E+02 0.0067 29.2 13.5 89 158-251 127-238 (347)
378 PRK11858 aksA trans-homoaconit 51.5 1.8E+02 0.0039 31.3 11.9 95 158-260 81-194 (378)
379 PRK07807 inosine 5-monophospha 51.4 90 0.002 34.8 9.9 118 42-233 226-358 (479)
380 TIGR01303 IMP_DH_rel_1 IMP deh 51.1 65 0.0014 35.9 8.7 67 152-232 224-292 (475)
381 TIGR03217 4OH_2_O_val_ald 4-hy 51.1 3.1E+02 0.0067 29.0 13.4 99 413-518 92-196 (333)
382 PRK02048 4-hydroxy-3-methylbut 51.0 1.3E+02 0.0027 34.4 10.7 50 152-202 41-94 (611)
383 cd08213 RuBisCO_large_III Ribu 50.9 3.7E+02 0.008 29.4 14.3 151 401-574 144-314 (412)
384 PRK10558 alpha-dehydro-beta-de 50.6 1.1E+02 0.0024 31.0 9.7 79 157-249 32-114 (256)
385 PLN02617 imidazole glycerol ph 50.5 1.1E+02 0.0024 34.7 10.4 107 412-522 338-494 (538)
386 cd04741 DHOD_1A_like Dihydroor 50.5 1.5E+02 0.0033 30.6 10.9 64 447-518 90-165 (294)
387 TIGR03239 GarL 2-dehydro-3-deo 50.2 1.2E+02 0.0025 30.8 9.7 79 157-249 25-107 (249)
388 TIGR01371 met_syn_B12ind 5-met 50.1 1.4E+02 0.003 35.4 11.6 84 147-242 173-266 (750)
389 TIGR01464 hemE uroporphyrinoge 50.0 3.3E+02 0.0071 28.6 15.3 135 410-573 182-337 (338)
390 PRK06552 keto-hydroxyglutarate 50.0 1.3E+02 0.0027 29.8 9.7 78 156-258 79-159 (213)
391 PRK00957 methionine synthase; 49.9 3.1E+02 0.0067 28.3 15.3 136 403-561 139-283 (305)
392 COG0413 PanB Ketopantoate hydr 49.9 2.4E+02 0.0052 28.8 11.5 99 151-258 93-200 (268)
393 TIGR03551 F420_cofH 7,8-dideme 49.7 25 0.00054 37.3 5.0 58 155-219 141-213 (343)
394 cd08207 RLP_NonPhot Ribulose b 49.7 1E+02 0.0022 33.6 9.6 98 152-262 159-268 (406)
395 PRK13575 3-dehydroquinate dehy 49.5 2.4E+02 0.0053 28.3 11.8 98 157-260 88-192 (238)
396 PRK08255 salicylyl-CoA 5-hydro 49.5 2E+02 0.0044 34.0 13.0 92 142-235 538-659 (765)
397 PRK07896 nicotinate-nucleotide 49.4 91 0.002 32.4 8.8 65 157-235 211-275 (289)
398 cd01966 Nitrogenase_NifN_1 Nit 49.4 84 0.0018 34.3 9.1 25 550-575 159-183 (417)
399 PRK00694 4-hydroxy-3-methylbut 49.2 90 0.002 35.3 9.2 50 152-202 45-98 (606)
400 TIGR02311 HpaI 2,4-dihydroxyhe 49.1 1.3E+02 0.0028 30.3 9.9 79 157-249 25-107 (249)
401 PRK04326 methionine synthase; 48.9 3.3E+02 0.0072 28.4 16.6 135 404-563 157-303 (330)
402 PLN02520 bifunctional 3-dehydr 48.9 1.1E+02 0.0024 34.6 10.2 97 413-518 102-200 (529)
403 PRK05567 inosine 5'-monophosph 48.7 1.3E+02 0.0028 33.6 10.6 65 411-489 230-296 (486)
404 PF01207 Dus: Dihydrouridine s 48.6 41 0.00089 35.1 6.4 90 163-262 19-130 (309)
405 cd08213 RuBisCO_large_III Ribu 48.6 1.1E+02 0.0023 33.5 9.6 101 153-263 148-260 (412)
406 TIGR01919 hisA-trpF 1-(5-phosp 48.4 2.4E+02 0.0053 28.3 11.7 99 412-516 87-199 (243)
407 PRK08385 nicotinate-nucleotide 48.3 83 0.0018 32.5 8.3 67 156-235 193-260 (278)
408 cd07941 DRE_TIM_LeuA3 Desulfob 48.3 2.5E+02 0.0053 28.7 11.9 100 157-261 83-202 (273)
409 PRK07709 fructose-bisphosphate 48.1 3.4E+02 0.0073 28.2 14.4 157 211-427 4-175 (285)
410 PF03481 SUA5: Putative GTP-bi 48.1 24 0.00052 31.6 3.9 46 400-445 77-122 (125)
411 TIGR03326 rubisco_III ribulose 48.1 4.1E+02 0.0088 29.1 18.0 212 40-312 158-385 (412)
412 PF04748 Polysacc_deac_2: Dive 48.1 1.4E+02 0.003 29.4 9.7 142 426-574 24-197 (213)
413 PRK12858 tagatose 1,6-diphosph 48.0 3.7E+02 0.008 28.6 15.1 129 415-559 113-276 (340)
414 TIGR02990 ectoine_eutA ectoine 48.0 2.2E+02 0.0047 28.6 11.2 97 157-258 111-210 (239)
415 PLN02925 4-hydroxy-3-methylbut 48.0 1.4E+02 0.0029 34.8 10.5 50 152-202 110-163 (733)
416 cd03308 CmuA_CmuC_like CmuA_Cm 47.7 2.1E+02 0.0045 30.8 11.8 83 157-248 282-376 (378)
417 PLN02495 oxidoreductase, actin 47.5 1.1E+02 0.0025 33.0 9.6 74 152-235 127-216 (385)
418 TIGR03253 oxalate_frc formyl-C 47.1 57 0.0012 35.6 7.4 59 35-129 70-128 (415)
419 PRK11815 tRNA-dihydrouridine s 47.0 2.3E+02 0.005 29.9 11.7 116 420-554 33-168 (333)
420 COG1038 PycA Pyruvate carboxyl 46.8 40 0.00087 39.4 6.1 65 391-455 677-744 (1149)
421 TIGR02090 LEU1_arch isopropylm 46.7 3.5E+02 0.0076 28.9 13.2 130 52-231 81-213 (363)
422 PRK13575 3-dehydroquinate dehy 46.6 2E+02 0.0043 28.9 10.7 108 401-517 80-193 (238)
423 PRK11858 aksA trans-homoaconit 46.6 3.7E+02 0.0081 28.8 13.5 64 152-221 145-211 (378)
424 COG0106 HisA Phosphoribosylfor 46.6 1.7E+02 0.0037 29.5 9.9 100 412-517 88-198 (241)
425 cd03308 CmuA_CmuC_like CmuA_Cm 46.4 3.6E+02 0.0077 29.0 13.3 40 534-573 328-377 (378)
426 PRK09250 fructose-bisphosphate 46.3 2.7E+02 0.0057 29.8 11.8 79 161-244 155-248 (348)
427 COG1804 CaiB Predicted acyl-Co 46.2 45 0.00098 36.2 6.3 60 35-130 72-131 (396)
428 TIGR03151 enACPred_II putative 46.1 1.9E+02 0.004 30.3 10.7 83 154-257 76-164 (307)
429 cd04727 pdxS PdxS is a subunit 45.8 1.9E+02 0.004 29.9 10.2 97 406-520 72-204 (283)
430 cd01292 metallo-dependent_hydr 45.6 2.9E+02 0.0063 26.7 15.4 158 399-570 26-194 (275)
431 PRK01033 imidazole glycerol ph 45.5 2E+02 0.0042 29.2 10.6 103 412-519 87-205 (258)
432 cd00429 RPE Ribulose-5-phospha 45.4 2.5E+02 0.0053 26.8 11.0 86 154-251 14-104 (211)
433 PRK02506 dihydroorotate dehydr 45.3 71 0.0015 33.4 7.5 10 448-457 92-101 (310)
434 cd01971 Nitrogenase_VnfN_like 45.2 86 0.0019 34.3 8.5 25 464-491 100-124 (427)
435 TIGR00735 hisF imidazoleglycer 45.1 2.6E+02 0.0056 28.1 11.4 102 412-518 87-207 (254)
436 cd07940 DRE_TIM_IPMS 2-isoprop 44.9 3.5E+02 0.0075 27.4 16.3 77 177-260 113-195 (268)
437 PRK00278 trpC indole-3-glycero 44.9 96 0.0021 31.5 8.2 63 157-235 125-188 (260)
438 PRK00208 thiG thiazole synthas 44.8 73 0.0016 32.2 7.0 78 157-247 136-222 (250)
439 COG1830 FbaB DhnA-type fructos 44.7 1.9E+02 0.0042 29.5 10.1 143 412-570 47-224 (265)
440 COG0191 Fba Fructose/tagatose 44.6 3.5E+02 0.0077 28.0 12.0 212 214-491 7-235 (286)
441 CHL00040 rbcL ribulose-1,5-bis 44.5 1.1E+02 0.0024 34.0 9.1 102 154-264 185-298 (475)
442 COG1242 Predicted Fe-S oxidore 44.4 60 0.0013 33.4 6.4 17 117-133 113-129 (312)
443 TIGR02635 RhaI_grampos L-rhamn 44.4 4.4E+02 0.0096 28.5 17.9 98 145-251 147-269 (378)
444 TIGR00676 fadh2 5,10-methylene 44.3 3.6E+02 0.0079 27.4 19.2 54 409-462 16-72 (272)
445 TIGR00423 radical SAM domain p 44.0 44 0.00095 34.8 5.7 60 154-220 106-180 (309)
446 TIGR01919 hisA-trpF 1-(5-phosp 43.9 2.2E+02 0.0048 28.6 10.6 95 156-260 87-199 (243)
447 PRK05581 ribulose-phosphate 3- 43.9 2.8E+02 0.0062 26.7 11.2 86 154-251 18-108 (220)
448 cd00452 KDPG_aldolase KDPG and 43.8 1.9E+02 0.0041 27.7 9.7 73 156-250 67-139 (190)
449 PRK05398 formyl-coenzyme A tra 43.7 66 0.0014 35.1 7.2 59 35-129 71-129 (416)
450 TIGR01430 aden_deam adenosine 43.7 3.9E+02 0.0085 27.7 13.3 148 401-571 65-232 (324)
451 TIGR02151 IPP_isom_2 isopenten 43.5 3.8E+02 0.0081 28.3 12.7 133 406-561 68-216 (333)
452 cd08206 RuBisCO_large_I_II_III 43.4 1.2E+02 0.0027 33.0 9.1 103 152-262 148-261 (414)
453 COG0269 SgbH 3-hexulose-6-phos 43.4 1.3E+02 0.0029 29.7 8.4 142 412-570 20-183 (217)
454 cd01320 ADA Adenosine deaminas 43.1 4E+02 0.0086 27.6 14.1 146 401-570 66-232 (325)
455 PRK02048 4-hydroxy-3-methylbut 43.0 1.2E+02 0.0026 34.6 9.0 49 409-458 42-94 (611)
456 TIGR00315 cdhB CO dehydrogenas 42.9 1.9E+02 0.004 27.4 9.1 93 413-505 20-125 (162)
457 PRK15108 biotin synthase; Prov 42.9 4.4E+02 0.0095 28.0 15.1 18 156-173 137-156 (345)
458 PRK08444 hypothetical protein; 42.8 47 0.001 35.5 5.8 76 154-236 150-240 (353)
459 TIGR00067 glut_race glutamate 42.8 77 0.0017 32.1 7.1 50 400-452 39-89 (251)
460 PRK10605 N-ethylmaleimide redu 42.8 3.5E+02 0.0075 29.0 12.4 112 403-515 154-297 (362)
461 PRK03525 crotonobetainyl-CoA:c 42.7 68 0.0015 34.9 7.1 91 4-130 12-129 (405)
462 KOG2949|consensus 42.7 2.2E+02 0.0047 28.5 9.7 84 152-238 117-209 (306)
463 cd01965 Nitrogenase_MoFe_beta_ 42.7 1.2E+02 0.0025 33.2 9.0 102 467-575 67-181 (428)
464 PF01729 QRPTase_C: Quinolinat 42.6 51 0.0011 31.3 5.4 66 412-491 91-156 (169)
465 PLN02925 4-hydroxy-3-methylbut 42.5 1.2E+02 0.0027 35.1 9.2 49 409-458 111-163 (733)
466 cd04747 OYE_like_5_FMN Old yel 42.5 4.6E+02 0.0099 28.1 15.2 22 42-63 137-165 (361)
467 PRK14024 phosphoribosyl isomer 42.3 2.7E+02 0.0059 27.8 10.9 93 157-259 89-195 (241)
468 PRK10605 N-ethylmaleimide redu 42.3 2.1E+02 0.0046 30.6 10.7 153 142-305 146-334 (362)
469 PTZ00413 lipoate synthase; Pro 42.2 3.9E+02 0.0085 29.0 12.3 74 412-491 243-331 (398)
470 cd00381 IMPDH IMPDH: The catal 42.1 68 0.0015 33.8 6.8 64 156-233 147-225 (325)
471 cd07945 DRE_TIM_CMS Leptospira 42.0 3.2E+02 0.0069 28.1 11.6 98 157-260 79-197 (280)
472 PRK07428 nicotinate-nucleotide 42.0 1.2E+02 0.0026 31.4 8.4 64 157-235 208-272 (288)
473 cd01568 QPRTase_NadC Quinolina 42.0 87 0.0019 32.1 7.4 60 159-233 195-254 (269)
474 TIGR00284 dihydropteroate synt 41.7 3E+02 0.0064 31.0 12.0 92 408-518 165-259 (499)
475 PRK08255 salicylyl-CoA 5-hydro 41.6 4.4E+02 0.0094 31.3 14.1 116 400-518 540-695 (765)
476 cd02811 IDI-2_FMN Isopentenyl- 41.3 2.1E+02 0.0045 30.1 10.3 102 438-561 101-215 (326)
477 KOG0369|consensus 41.3 96 0.0021 35.7 7.8 65 391-455 701-769 (1176)
478 PRK04161 tagatose 1,6-diphosph 41.3 1.4E+02 0.003 31.5 8.7 73 156-237 189-278 (329)
479 PRK12330 oxaloacetate decarbox 41.3 3.9E+02 0.0084 30.1 12.7 98 414-518 103-208 (499)
480 COG0284 PyrF Orotidine-5'-phos 41.3 2.2E+02 0.0047 28.7 9.9 120 439-573 54-175 (240)
481 PRK00957 methionine synthase; 41.2 4.2E+02 0.0091 27.3 15.3 166 42-237 36-222 (305)
482 PRK09016 quinolinate phosphori 41.2 1.2E+02 0.0026 31.6 8.2 63 156-235 219-281 (296)
483 TIGR01862 N2-ase-Ialpha nitrog 41.0 1.4E+02 0.003 32.9 9.3 26 465-492 133-158 (443)
484 PRK14041 oxaloacetate decarbox 40.9 2.3E+02 0.0049 31.6 10.8 64 407-476 152-218 (467)
485 PRK07360 FO synthase subunit 2 40.9 56 0.0012 35.1 6.0 59 154-220 162-236 (371)
486 TIGR01278 DPOR_BchB light-inde 40.8 1.6E+02 0.0036 33.0 10.0 24 465-491 100-123 (511)
487 TIGR01306 GMP_reduct_2 guanosi 40.7 4.6E+02 0.01 27.6 13.9 118 85-259 68-203 (321)
488 TIGR03326 rubisco_III ribulose 40.7 5.2E+02 0.011 28.3 14.9 107 401-523 157-277 (412)
489 TIGR00693 thiE thiamine-phosph 40.7 2.7E+02 0.0058 26.5 10.3 147 35-233 2-179 (196)
490 PRK07094 biotin synthase; Prov 40.6 1.7E+02 0.0036 30.5 9.5 76 412-493 130-218 (323)
491 COG1902 NemA NADH:flavin oxido 40.6 4.9E+02 0.011 27.9 17.2 153 142-305 136-331 (363)
492 PRK00115 hemE uroporphyrinogen 40.4 4.5E+02 0.0097 27.7 12.8 84 158-250 253-343 (346)
493 cd08212 RuBisCO_large_I Ribulo 40.3 5.5E+02 0.012 28.4 14.0 153 401-573 158-327 (450)
494 PRK12999 pyruvate carboxylase; 40.1 71 0.0015 39.6 7.4 49 407-455 690-741 (1146)
495 cd01572 QPRTase Quinolinate ph 40.1 1E+02 0.0022 31.6 7.5 62 157-235 194-255 (268)
496 cd03309 CmuC_like CmuC_like. P 40.0 4.7E+02 0.01 27.5 13.8 86 157-250 226-317 (321)
497 PRK05437 isopentenyl pyrophosp 40.0 4E+02 0.0086 28.4 12.3 105 150-261 75-193 (352)
498 PRK05742 nicotinate-nucleotide 39.9 1.3E+02 0.0028 31.1 8.2 63 156-235 200-262 (277)
499 TIGR03550 F420_cofG 7,8-dideme 39.9 2.9E+02 0.0063 28.9 11.2 21 38-58 34-54 (322)
500 PRK14476 nitrogenase molybdenu 39.6 1.2E+02 0.0026 33.6 8.5 100 469-575 80-194 (455)
No 1
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=3.4e-64 Score=525.10 Aligned_cols=294 Identities=32% Similarity=0.574 Sum_probs=262.0
Q ss_pred CccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc---CCcccccccccCCCCCCCcc
Q psy15811 264 GVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA---ASIGPYGTVLRDGSEYSGHY 337 (581)
Q Consensus 264 g~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~~~~~~~~~~~~~~ 337 (581)
.++++||||||+|+++ |.++. +|+|++.+++++||.|+++|++|++| ||+|| ++..++.++
T Consensus 21 ~~lilDGgmGT~Le~~-g~~~~-~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~----------- 87 (335)
T PLN02489 21 GCAVIDGGFATELERH-GADLN-DPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESR----------- 87 (335)
T ss_pred CEEEEEChHHHHHHhC-CCCCC-CCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHc-----------
Confidence 3678999999999997 98874 68999999999999999999999999 99999 555555554
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc-----------CCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy15811 338 VDSMTEADLIAWHRPNVEALVRAGVDYLALI-----------KPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADL 406 (581)
Q Consensus 338 ~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~-----------~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~ 406 (581)
+ ++.++++++++++|++|++|++++.... ..+++++|+|||||+|+++.+|+||+|+|.+.++++++
T Consensus 88 -g-~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~ 165 (335)
T PLN02489 88 -G-LSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKL 165 (335)
T ss_pred -C-CCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHH
Confidence 3 6678899999999999999998763210 01346899999999999999999999999977999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcC-CCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCce
Q psy15811 407 IAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFP-GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 407 ~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~-~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~ 485 (581)
+++|++|++.|.++|||+|+|||||++.|++++++++++.. ++|+|+||+|++++++++|+++.+++..+. ...+++
T Consensus 166 ~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~--~~~~~~ 243 (335)
T PLN02489 166 KDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIAD--SCKKVV 243 (335)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHH--hcCCce
Confidence 99999999999999999999999999999999999999753 699999999999999999999999999883 345789
Q ss_pred EEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccC--CcCHHHHHHHHHHHHHcCCcEEeecCCCchH
Q psy15811 486 AIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLD--TEDEYSILHYVPQWLEEGVNIIGGCCEVTSY 563 (581)
Q Consensus 486 ~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~--~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~ 563 (581)
+||+||++|+++.++|++++... +.|+++|||+|.+|+...+.|.. ..+|++|++++++|++.|++||||||||||+
T Consensus 244 ~iGiNC~~p~~~~~~l~~l~~~~-~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~ 322 (335)
T PLN02489 244 AVGINCTPPRFIHGLILSIRKVT-SKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPN 322 (335)
T ss_pred EEEecCCCHHHHHHHHHHHHhhc-CCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHH
Confidence 99999999999999999998876 58999999999999887677863 3458899999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy15811 564 EIQQMRIMIDEF 575 (581)
Q Consensus 564 hI~al~~~l~~~ 575 (581)
||++|++.++.+
T Consensus 323 hI~al~~~l~~~ 334 (335)
T PLN02489 323 TIRAISKALSER 334 (335)
T ss_pred HHHHHHHHHhcC
Confidence 999999999754
No 2
>KOG1579|consensus
Probab=100.00 E-value=1.5e-64 Score=504.28 Aligned_cols=293 Identities=35% Similarity=0.588 Sum_probs=264.6
Q ss_pred CCC-ccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc---CCcccccccccCCCCCC
Q psy15811 262 NKG-VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA---ASIGPYGTVLRDGSEYS 334 (581)
Q Consensus 262 nag-~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~~~~~~~~~~~ 334 (581)
+.| ++++||||+|+|+++ |.+..+.||||+..+.++||.|+++|++||+| ||+|| ++...+..+
T Consensus 15 ~~~~vlvlDGG~~t~Ler~-g~~~~~~PlWs~~~~~s~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~-------- 85 (317)
T KOG1579|consen 15 NTGRVLVLDGGFGTQLERR-GYDKVDSPLWSAEALASNPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEY-------- 85 (317)
T ss_pred ccCcEEEEeChHHHHHHhh-cccccCCCCCCchhhccChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhh--------
Confidence 444 889999999999999 88755679999999999999999999999999 99999 444444443
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy15811 335 GHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNV 414 (581)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~ 414 (581)
...++..++++..+++|+.|++.+..+ .-+|+||+||+|+++++|+||+|.|.+..+++++++||++|+
T Consensus 86 ------~~~~~~~el~~~s~~~a~~Are~~~~~-----~~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~~~~k~ql 154 (317)
T KOG1579|consen 86 ------VEEEELIELYEKSVELADLARERLGEE-----TGYVAGSIGPYGATLADGSEYTGIYGDNVEFEELYDFFKQQL 154 (317)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHhccc-----cceeeeecccccceecCCcccccccccccCHHHHHHHHHHHH
Confidence 236778899999999999999987543 129999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEecccCCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCC
Q psy15811 415 EALVRAGVDYLALETIPAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR 493 (581)
Q Consensus 415 ~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~ 493 (581)
+.|.++|||+|+|||+|+..||+++++++++. +++|+|+||||.|.+++++|+++++++..+ ..+.++.+|||||++
T Consensus 155 e~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~--~~~~~~~~IGvNC~~ 232 (317)
T KOG1579|consen 155 EVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLL--KDGINLLGIGVNCVS 232 (317)
T ss_pred HHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHh--ccCCceEEEEeccCC
Confidence 99999999999999999999999999999987 899999999999999999999999999977 445579999999999
Q ss_pred CccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCc-CHHHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHHHH
Q psy15811 494 PSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTE-DEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMI 572 (581)
Q Consensus 494 p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~~l 572 (581)
|..+..+++.|.......|+++|||+|++||...++|.... .+++|..++++|+++||+||||||||+|.||++|++.+
T Consensus 233 ~~~~~~~~~~L~~~~~~~~llvYPNsGe~yd~~~g~~~~~~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~v 312 (317)
T KOG1579|consen 233 PNFVEPLLKELMAKLTKIPLLVYPNSGEVYDNEKGGWIPTPFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEAV 312 (317)
T ss_pred chhccHHHHHHhhccCCCeEEEecCCCCCCccccCcccCCCcccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHHh
Confidence 99999999999855457999999999999999977898763 35679999999999999999999999999999999999
Q ss_pred hccc
Q psy15811 573 DEFN 576 (581)
Q Consensus 573 ~~~~ 576 (581)
++.+
T Consensus 313 ~~~~ 316 (317)
T KOG1579|consen 313 KKYR 316 (317)
T ss_pred hccc
Confidence 8765
No 3
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=5.6e-63 Score=511.27 Aligned_cols=287 Identities=37% Similarity=0.665 Sum_probs=258.8
Q ss_pred CCC-ccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc---CCcccccccccCCCCCC
Q psy15811 262 NKG-VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA---ASIGPYGTVLRDGSEYS 334 (581)
Q Consensus 262 nag-~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~~~~~~~~~~~ 334 (581)
+.+ ++++||||||+|+++ |++.. .|+||+.+++++||.|+++|++|++| ||+|| ++..++.++
T Consensus 9 ~~~~~lilDGgmGT~L~~~-g~~~~-~~~ws~~~l~~~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~-------- 78 (304)
T PRK09485 9 AQGPVLILDGALATELEAR-GCDLN-DSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAAR-------- 78 (304)
T ss_pred ccCCEEEEeChHHHHHHHc-CCCCC-CcchhhhhhccChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHc--------
Confidence 344 779999999999997 88764 68999999999999999999999999 99999 566666555
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy15811 335 GHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNV 414 (581)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~ 414 (581)
| ++.+++++||+++|++|++|++++.. .+++|+|||||+|+++++|+||+|+|. +++++++++|++|+
T Consensus 79 ----g-~~~~~~~~l~~~av~lA~~a~~~~~~-----~~~~VaGsiGP~g~~l~~~~~y~g~~~--~~~~~~~~~~~~q~ 146 (304)
T PRK09485 79 ----G-LSEAEAEELIRRSVELAKEARDEFWA-----EKPLVAGSVGPYGAYLADGSEYRGDYG--LSEEELQDFHRPRI 146 (304)
T ss_pred ----C-CCHHHHHHHHHHHHHHHHHHHHhhcc-----CCceEEEecCCcccccCCCCCCCCCCC--CCHHHHHHHHHHHH
Confidence 3 65788999999999999999987631 258999999999999999999999985 89999999999999
Q ss_pred HHHHhCCCCEEEecccCCHHHHHHHHHHHHh-cCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCC
Q psy15811 415 EALVRAGVDYLALETIPAEKEALALVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR 493 (581)
Q Consensus 415 ~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~-~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~ 493 (581)
+.|.++|||+|+|||+|++.|++++++++++ .+++|+|+||+|+++++|++|+++++++..+. ....+++||+||++
T Consensus 147 ~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~--~~~~~~~iGiNC~~ 224 (304)
T PRK09485 147 EALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLA--ASPQVVAVGVNCTA 224 (304)
T ss_pred HHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHh--cCCCceEEEecCCC
Confidence 9999999999999999999999999999995 34899999999999999999999999999983 34568999999999
Q ss_pred CccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHHHHh
Q psy15811 494 PSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMID 573 (581)
Q Consensus 494 p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~~l~ 573 (581)
|+++.++|+++.... +.|+++|||+|.+++..++.|.+..++++|++++++|++.|++||||||||||+||++|++.++
T Consensus 225 p~~~~~~l~~~~~~~-~~pl~~~PNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGttP~hI~al~~~l~ 303 (304)
T PRK09485 225 PELVTAAIAALRAVT-DKPLVVYPNSGEVYDAVTKTWHGPADDASLGELAPEWYAAGARLIGGCCRTTPEDIAALAAALK 303 (304)
T ss_pred HHHHHHHHHHHHhcc-CCcEEEECCCCCCCCCCCCcccCCCChHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHHHHHHhh
Confidence 999999999998765 5899999999999987767788766666899999999999999999999999999999999875
No 4
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-63 Score=486.42 Aligned_cols=283 Identities=35% Similarity=0.604 Sum_probs=257.7
Q ss_pred ccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc---CCcccccccccCCCCCCCccc
Q psy15811 265 VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA---ASIGPYGTVLRDGSEYSGHYV 338 (581)
Q Consensus 265 ~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~~~~~~~~~~~~~~~ 338 (581)
++++||||+|+|+++ |.++. .|+||++++.+.||.|+++|.+|++| ||+|+ +++..+...
T Consensus 10 vliLDGG~~tELe~r-G~~l~-~plWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~------------ 75 (300)
T COG2040 10 VLILDGGLATELERR-GCDLS-DPLWSALALVDEPEIVRNVHADFLRAGADIITTATYQATPEGFAER------------ 75 (300)
T ss_pred EEEecCchhHHHHhc-CCCCC-chhhhhhhcccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHh------------
Confidence 788999999999999 99885 78999999999999999999999999 88888 666665543
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy15811 339 DSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALV 418 (581)
Q Consensus 339 ~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~ 418 (581)
.+.++.+.+++.+|++|++|++.++.+ ...|+||+||+|+++++ ||+|+|. .+.+.+++||++|+++|.
T Consensus 76 --~~~~~~~~l~~~sv~la~~ard~~g~~-----~~~iagsiGP~ga~~a~--Ey~g~Y~--~~~d~~~~fh~~rie~l~ 144 (300)
T COG2040 76 --VSEDEAKQLIRRSVELARAARDAYGEE-----NQNIAGSLGPYGAALAD--EYRGDYG--ASQDALYKFHRPRIEALN 144 (300)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHhccc-----ccccceeccchhhhcCh--hhcCccC--ccHHHHHHHHHHHHHHHH
Confidence 347789999999999999999998643 34589999999999998 9999997 677888999999999999
Q ss_pred hCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCCCccch
Q psy15811 419 RAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVS 498 (581)
Q Consensus 419 ~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~~~~ 498 (581)
++|||+|.+||+|++.|+++++++++++ ++|+||||||++++++++|+++.+++..+ ...+++.++||||++|+++.
T Consensus 145 ~ag~Dlla~ETip~i~Ea~Aiv~l~~~~-s~p~wISfT~~d~~~lr~Gt~l~eaa~~~--~~~~~iaa~gvNC~~p~~~~ 221 (300)
T COG2040 145 EAGADLLACETLPNITEAEAIVQLVQEF-SKPAWISFTLNDDTRLRDGTPLSEAAAIL--AGLPNIAALGVNCCHPDHIP 221 (300)
T ss_pred hCCCcEEeecccCChHHHHHHHHHHHHh-CCceEEEEEeCCCCccCCCccHHHHHHHH--hcCcchhheeeccCChhhhH
Confidence 9999999999999999999999999996 99999999999999999999999999988 33468999999999999999
Q ss_pred HHHHHHHhhCCCCeEEEeeCCCCCccccccccc-CCcCHHHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHHHHhcc
Q psy15811 499 TLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWL-DTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIDEF 575 (581)
Q Consensus 499 ~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~~l~~~ 575 (581)
.+|+.+.......|+++|||+|+.||..++.|+ +...++.|...+.+|.+.|++||||||||+|.||++|++.+++.
T Consensus 222 a~i~~l~~~~~~~piivYPNSGe~~d~~~k~w~~p~~~~~~~~~~a~~w~~~GA~iiGGCCrt~p~~I~ei~~~~~~~ 299 (300)
T COG2040 222 AAIEELSKLLTGKPIIVYPNSGEQYDPAGKTWHGPALSADSYSTLAKSWVEAGARIIGGCCRTGPAHIAEIAKALKKA 299 (300)
T ss_pred HHHHHHHhcCCCCceEEcCCcccccCcCCCcCCCCCCchhHHHHHHHHHHhcccceeeeccCCChHHHHHHHHHHhcc
Confidence 999999666557999999999999998878898 45567899999999999999999999999999999999999864
No 5
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=4.4e-60 Score=494.18 Aligned_cols=294 Identities=33% Similarity=0.507 Sum_probs=249.0
Q ss_pred cCceEEEeccHHHHHhhCcCCCCCCCCCccccccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHH
Q psy15811 4 ICKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALD 83 (581)
Q Consensus 4 ~~~ili~DGamgT~L~~~~g~~~~~~~~ws~~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~ 83 (581)
.++++|+||||||+|+++ |++++ .|+||+.+++++||.|+++|++|++||||||+|||||+|+.+|.++|++.+++++
T Consensus 19 ~~~~lilDGgmGT~Le~~-g~~~~-~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~ 96 (335)
T PLN02489 19 AGGCAVIDGGFATELERH-GADLN-DPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREESET 96 (335)
T ss_pred cCCEEEEEChHHHHHHhC-CCCCC-CCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHHHHH
Confidence 456899999999999998 98875 4799999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHhhhhcCCCc-cccc-ccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy15811 84 LLHKSVQLMNSAKDKENQTPD-INLN-KTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEAL 161 (581)
Q Consensus 84 i~~~av~lA~~a~~~~~~~~~-~~~~-~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l 161 (581)
+|++||+|||+|++++..... .+.+ ..+....++++|+|||||+|+++++|+||+|+|...+++++++++|++|++.|
T Consensus 97 l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l 176 (335)
T PLN02489 97 LLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVL 176 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHH
Confidence 999999999999987522100 0000 00000012799999999999999999999999998899999999999999999
Q ss_pred HHCCCcEEEEEccCCHHHHHHHHHHHHhcC-CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhh
Q psy15811 162 VRAGVDYLALETIPAEKEALALVKLLREFP-GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSH 240 (581)
Q Consensus 162 ~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~-~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~ 240 (581)
+++|||+|+||||+++.|++++++++++.. ++|+|+||++++++++++|+++.+++..+.+ ..++++||+||++|++
T Consensus 177 ~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC~~p~~ 254 (335)
T PLN02489 177 AEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADS--CKKVVAVGINCTPPRF 254 (335)
T ss_pred HhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHh--cCCceEEEecCCCHHH
Confidence 999999999999999999999999999763 6999999999999999999999999988754 4578999999999999
Q ss_pred HHHHHHHHHhhCCCCceEEecCCCccc--cCCC-----------chhhhccc--cCcccCCCCcccccccCCChHHHHHH
Q psy15811 241 VSTLVRCIKQSHPTVQTIVYPNKGVKL--LDGS-----------FTSQVSRH--TIKDVDGHPLWSSVYLTTEPEACVET 305 (581)
Q Consensus 241 ~~~~l~~l~~~~~~~p~~~~pnag~~~--~dG~-----------~gt~L~~~--~g~~~~g~~lws~~~~~~~Pe~v~~v 305 (581)
|.++|+.++.. .+.||++|||+|.+. ..+. |+....+. .|..+.|+| |.++|++|+++
T Consensus 255 ~~~~l~~l~~~-~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGC------Cgt~P~hI~al 327 (335)
T PLN02489 255 IHGLILSIRKV-TSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGC------CRTTPNTIRAI 327 (335)
T ss_pred HHHHHHHHHhh-cCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeC------CCCCHHHHHHH
Confidence 99999999985 778999999999442 1111 22222111 267777888 99999999999
Q ss_pred HHH
Q psy15811 306 HRD 308 (581)
Q Consensus 306 h~~ 308 (581)
.+.
T Consensus 328 ~~~ 330 (335)
T PLN02489 328 SKA 330 (335)
T ss_pred HHH
Confidence 553
No 6
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=9.2e-60 Score=487.26 Aligned_cols=275 Identities=37% Similarity=0.573 Sum_probs=244.2
Q ss_pred CceEEEeccHHHHHhhCcCCCCCCCCCccccccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHH
Q psy15811 5 CKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDL 84 (581)
Q Consensus 5 ~~ili~DGamgT~L~~~~g~~~~~~~~ws~~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i 84 (581)
++++|+||||||+|+++ |+++. .|+||+.+|+++||.|+++|++|++||||||+||||++|+.+|.++|++++++++|
T Consensus 11 ~~~lilDGgmGT~L~~~-g~~~~-~~~ws~~~l~~~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l 88 (304)
T PRK09485 11 GPVLILDGALATELEAR-GCDLN-DSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEEL 88 (304)
T ss_pred CCEEEEeChHHHHHHHc-CCCCC-CcchhhhhhccChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHH
Confidence 45899999999999998 98764 57999999999999999999999999999999999999999999999987899999
Q ss_pred HHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy15811 85 LHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRA 164 (581)
Q Consensus 85 ~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~ 164 (581)
|++||+|||++++++.. . +++|+|||||+|.++++++||+|.|. +++++++++|++|+++|+++
T Consensus 89 ~~~av~lA~~a~~~~~~---------~-----~~~VaGsiGP~g~~l~~~~~y~g~~~--~~~~~~~~~~~~q~~~l~~~ 152 (304)
T PRK09485 89 IRRSVELAKEARDEFWA---------E-----KPLVAGSVGPYGAYLADGSEYRGDYG--LSEEELQDFHRPRIEALAEA 152 (304)
T ss_pred HHHHHHHHHHHHHhhcc---------C-----CceEEEecCCcccccCCCCCCCCCCC--CCHHHHHHHHHHHHHHHhhC
Confidence 99999999999987421 1 58999999999999999999999874 89999999999999999999
Q ss_pred CCcEEEEEccCCHHHHHHHHHHHHh-cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHH
Q psy15811 165 GVDYLALETIPAEKEALALVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVST 243 (581)
Q Consensus 165 gvD~l~~ET~~~~~E~~aa~~a~~~-~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~ 243 (581)
|||+|+||||++++|++++++++|+ .+++|+|+||+++++|+|++|+++++++..+.+ ...+++||+||++|++|.+
T Consensus 153 gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~--~~~~~~iGiNC~~p~~~~~ 230 (304)
T PRK09485 153 GADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAA--SPQVVAVGVNCTAPELVTA 230 (304)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHhc--CCCceEEEecCCCHHHHHH
Confidence 9999999999999999999999994 458999999999999999999999999998864 4568999999999999999
Q ss_pred HHHHHHhhCCCCceEEecCCCcccc--CCC---------chhh---hccccCcccCCCCcccccccCCChHHHHHHHH
Q psy15811 244 LVRCIKQSHPTVQTIVYPNKGVKLL--DGS---------FTSQ---VSRHTIKDVDGHPLWSSVYLTTEPEACVETHR 307 (581)
Q Consensus 244 ~l~~l~~~~~~~p~~~~pnag~~~~--dG~---------~gt~---L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~ 307 (581)
+|+.+.+. .+.|+++|||+|.+.. ++. |+.. ..+. |..+.|+| |.++|+||+++.+
T Consensus 231 ~l~~~~~~-~~~pl~~~PNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~iiGGC------CGttP~hI~al~~ 300 (304)
T PRK09485 231 AIAALRAV-TDKPLVVYPNSGEVYDAVTKTWHGPADDASLGELAPEWYAA-GARLIGGC------CRTTPEDIAALAA 300 (304)
T ss_pred HHHHHHhc-cCCcEEEECCCCCCCCCCCCcccCCCChHHHHHHHHHHHHc-CCeEEeeC------CCCCHHHHHHHHH
Confidence 99999874 6789999999994331 111 2222 2233 77778898 9999999999954
No 7
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-60 Score=467.40 Aligned_cols=273 Identities=25% Similarity=0.311 Sum_probs=239.4
Q ss_pred cCceEEEeccHHHHHhhCcCCCC---CCCCCccccccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHH
Q psy15811 4 ICKVKLLDGSFTSQVSRHTIKDV---DGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQE 80 (581)
Q Consensus 4 ~~~ili~DGamgT~L~~~~g~~~---~~~~~ws~~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~ 80 (581)
.++|||+||||||+||+. |++- ++-....+.+|+++||+|++||++|++||||||+||||++|+.+|++|++ +++
T Consensus 13 ~~rVLv~DGAmGT~lq~~-~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~l-ed~ 90 (311)
T COG0646 13 KERVLVLDGAMGTMLQSY-GLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGL-EDK 90 (311)
T ss_pred HcCEEEeechhhhhHHhc-CCcHHhhccccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhCh-HHH
Confidence 468999999999999999 8753 22234458999999999999999999999999999999999999999999 799
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy15811 81 ALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEA 160 (581)
Q Consensus 81 ~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~ 160 (581)
+++||++|++|||++++++. . . + ++||+|||||++.+++...+ + .++++++++.|++|+++
T Consensus 91 v~~in~~aa~iAR~aA~~~~-~------~-k-----~rfVaGsiGPt~k~~~~~~~----~--~v~fd~l~~ay~eq~~~ 151 (311)
T COG0646 91 VYEINQKAARIARRAADEAG-D------P-K-----PRFVAGSIGPTNKTLSISPD----F--AVTFDELVEAYREQVEG 151 (311)
T ss_pred HHHHHHHHHHHHHHHHhhcC-C------C-C-----ceEEEEeccCcCCcCCcCCc----c--cccHHHHHHHHHHHHHH
Confidence 99999999999999999863 1 1 3 89999999999987776421 1 58999999999999999
Q ss_pred HHHCCCcEEEEEccCCHHHHHHHHHHHHhcC-----CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 161 LVRAGVDYLALETIPAEKEALALVKLLREFP-----GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 161 l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~-----~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
|+++|||+||+||++|++|+|+|+.++++.. .+|||+|.|+.+.|++++|+++++++..+. +.++++||+||
T Consensus 152 Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~---~~~~~~vGlNC 228 (311)
T COG0646 152 LIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLE---HLGPDAVGLNC 228 (311)
T ss_pred HHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhh---ccCCcEEeecc
Confidence 9999999999999999999999999999653 399999999999999999999999998886 68899999999
Q ss_pred C-ChhhHHHHHHHHHhhCCCCceEEecCCCccccCCC----------chhh---hccccCcccCCCCcccccccCCChHH
Q psy15811 236 V-RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGS----------FTSQ---VSRHTIKDVDGHPLWSSVYLTTEPEA 301 (581)
Q Consensus 236 ~-~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~----------~gt~---L~~~~g~~~~g~~lws~~~~~~~Pe~ 301 (581)
+ ||++|++.|+.+... .+.++++|||+|++..-|+ |+.. +.+..++.+.|+| |+|+|||
T Consensus 229 a~Gp~~m~~~l~~ls~~-~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~vnIvGGC------CGTTPeH 301 (311)
T COG0646 229 ALGPDEMRPHLRELSRI-ADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGVNIVGGC------CGTTPEH 301 (311)
T ss_pred ccCHHHHHHHHHHHHhc-cCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCCceeeccc------cCCCHHH
Confidence 8 999999999999996 8999999999997766665 3333 3344237888999 9999999
Q ss_pred HHHHHH
Q psy15811 302 CVETHR 307 (581)
Q Consensus 302 v~~vh~ 307 (581)
|+++-+
T Consensus 302 Iraia~ 307 (311)
T COG0646 302 IRAIAE 307 (311)
T ss_pred HHHHHH
Confidence 998843
No 8
>KOG1579|consensus
Probab=100.00 E-value=4.6e-57 Score=450.64 Aligned_cols=280 Identities=35% Similarity=0.558 Sum_probs=248.8
Q ss_pred cCceEEEeccHHHHHhhCcCCCCCCCCCccccccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHH
Q psy15811 4 ICKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALD 83 (581)
Q Consensus 4 ~~~ili~DGamgT~L~~~~g~~~~~~~~ws~~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~ 83 (581)
..+++|+||||||+|+++ |.+-...|+||+..++++||+|+++|++||+||||||+|||||++...+.++ .+.++..+
T Consensus 16 ~~~vlvlDGG~~t~Ler~-g~~~~~~PlWs~~~~~s~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~-~~~~~~~e 93 (317)
T KOG1579|consen 16 TGRVLVLDGGFGTQLERR-GYDKVDSPLWSAEALASNPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEY-VEEEELIE 93 (317)
T ss_pred cCcEEEEeChHHHHHHhh-cccccCCCCCCchhhccChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhh-hhhHHHHH
Confidence 357999999999999999 8873346999999999999999999999999999999999999999999999 55789999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy15811 84 LLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVR 163 (581)
Q Consensus 84 i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~ 163 (581)
+++..+++|+.|++.+... .-+|+|||||+++++++++||+|+|.+.+++++++++|+.|++.|.+
T Consensus 94 l~~~s~~~a~~Are~~~~~--------------~~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~ 159 (317)
T KOG1579|consen 94 LYEKSVELADLARERLGEE--------------TGYVAGSIGPYGATLADGSEYTGIYGDNVEFEELYDFFKQQLEVFLE 159 (317)
T ss_pred HHHHHHHHHHHHHHHhccc--------------cceeeeecccccceecCCcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 9999999999999876321 22999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCHHHHHHHHHHHHhc-CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHH
Q psy15811 164 AGVDYLALETIPAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVS 242 (581)
Q Consensus 164 ~gvD~l~~ET~~~~~E~~aa~~a~~~~-~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~ 242 (581)
+|||+|+|||||+..||+++++++++. ++.|+|||||+.+.|++++|+++++++..+.. ..++.+|||||++|..+.
T Consensus 160 ~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~~--~~~~~~IGvNC~~~~~~~ 237 (317)
T KOG1579|consen 160 AGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLLKD--GINLLGIGVNCVSPNFVE 237 (317)
T ss_pred CCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHhcc--CCceEEEEeccCCchhcc
Confidence 999999999999999999999999987 89999999999999999999999999886543 335999999999999999
Q ss_pred HHHHHHHhhCCCCceEEecCCC--ccccCCCc-h------------hhhccccCcccCCCCcccccccCCChHHHHHHHH
Q psy15811 243 TLVRCIKQSHPTVQTIVYPNKG--VKLLDGSF-T------------SQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHR 307 (581)
Q Consensus 243 ~~l~~l~~~~~~~p~~~~pnag--~~~~dG~~-g------------t~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~ 307 (581)
++++.+....++.|+++|||+| ...-+|++ . .+.... |..+.|+| |.++|.+|+++++
T Consensus 238 ~~~~~L~~~~~~~~llvYPNsGe~yd~~~g~~~~~~~~~~~~~~~~~~~~~l-Gv~iIGGC------Crt~P~~I~aI~e 310 (317)
T KOG1579|consen 238 PLLKELMAKLTKIPLLVYPNSGEVYDNEKGGWIPTPFGLEPWQTYVKKAIDL-GVRIIGGC------CRTTPKHIRAIAE 310 (317)
T ss_pred HHHHHHhhccCCCeEEEecCCCCCCccccCcccCCCcccchHHHHHHHHHhc-ccceeCcc------cCCChHHHHHHHH
Confidence 9999998545889999999999 55555642 1 133333 67777888 9999999999966
Q ss_pred H
Q psy15811 308 D 308 (581)
Q Consensus 308 ~ 308 (581)
+
T Consensus 311 ~ 311 (317)
T KOG1579|consen 311 A 311 (317)
T ss_pred H
Confidence 4
No 9
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=1.2e-56 Score=467.56 Aligned_cols=278 Identities=21% Similarity=0.220 Sum_probs=235.1
Q ss_pred CccccCCCchhhhccccCcccCC-CCcccccccCCChHHHHHHHHHHHHH---HHhhc---CCcccccccccCCCCCCCc
Q psy15811 264 GVKLLDGSFTSQVSRHTIKDVDG-HPLWSSVYLTTEPEACVETHRDFIRG---HIETA---ASIGPYGTVLRDGSEYSGH 336 (581)
Q Consensus 264 g~~~~dG~~gt~L~~~~g~~~~g-~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~~~~~~~~~~~~~ 336 (581)
.++++||||||+|+++ |++... .++| ++++||.|+++|++|++| ||+|| ++..++..+
T Consensus 13 ~ililDGgmGTeL~~~-G~~~~~~~~lw----si~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~---------- 77 (336)
T PRK07534 13 GVLLADGATGTNLFNM-GLESGEAPELW----NEDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLH---------- 77 (336)
T ss_pred CEEEEECHHHHHHHHC-CCCCCCCchHh----cccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhc----------
Confidence 4789999999999998 887642 2466 489999999999999999 99999 343333222
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy15811 337 YVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEA 416 (581)
Q Consensus 337 ~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~ 416 (581)
+ .++++.++|+++|++|++|++++ +++++|+|||||+|+++.+++ .++.++++++|++|++.
T Consensus 78 --~--~~~~~~~l~~~av~lAr~a~~~~------~~~~~VaGsIGP~g~~l~~~~--------~~~~~e~~~~~~~qi~~ 139 (336)
T PRK07534 78 --D--AQDRVHELNRAAAEIAREVADKA------GRKVIVAGSVGPTGEIMEPMG--------ALTHALAVEAFHEQAEG 139 (336)
T ss_pred --C--cHHHHHHHHHHHHHHHHHHHHhc------CCccEEEEecCCCccccCCCC--------CCCHHHHHHHHHHHHHH
Confidence 1 37789999999999999998764 235899999999999887532 36889999999999999
Q ss_pred HHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCC-CCc
Q psy15811 417 LVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-RPS 495 (581)
Q Consensus 417 l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~-~p~ 495 (581)
|.++|||+|+|||||++.|++++++++++ .++|||+||+|+++++|.+|+++++++..+.. .+.++++||+||+ +|+
T Consensus 140 l~~~gvD~l~~ET~p~l~E~~a~~~~~~~-~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~-~~~~~~avGvNC~~gp~ 217 (336)
T PRK07534 140 LKAGGADVLWVETISAPEEIRAAAEAAKL-AGMPWCGTMSFDTAGRTMMGLTPADLADLVEK-LGEPPLAFGANCGVGAS 217 (336)
T ss_pred HHhCCCCEEEEeccCCHHHHHHHHHHHHH-cCCeEEEEEEECCCCeeCCCCcHHHHHHHHHh-cCCCceEEEecCCCCHH
Confidence 99999999999999999999999999998 59999999999999999999999999999843 3457799999998 599
Q ss_pred cchHHHHHH-HhhCCCCeEEEeeCCCC-CcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHHHHh
Q psy15811 496 HVSTLVRCI-KQSHPTVQTIVYPNKGG-VWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMID 573 (581)
Q Consensus 496 ~~~~~l~~l-~~~~~~~pl~~ypNag~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~~l~ 573 (581)
++...+.++ .... +.|+++|||+|. .|+.. .|.+..+|+.|++++++|++.|++||||||||||+||++|++.++
T Consensus 218 ~~~~~l~~~~~~~~-~~pl~vyPNaG~p~~~~~--~~~~~~~p~~~~~~~~~~~~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 218 DLLRTVLGFTAQGP-ERPIIAKGNAGIPKYVDG--HIHYDGTPELMAEYAVLARDAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred HHHHHHHHHHHhcC-CCeEEEEcCCCCcccCCC--ccccCCCHHHHHHHHHHHHHcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 886666555 4433 589999999998 55433 344566789999999999999999999999999999999999998
Q ss_pred cccCCC
Q psy15811 574 EFNTKK 579 (581)
Q Consensus 574 ~~~~~~ 579 (581)
+..|++
T Consensus 295 ~~~~~~ 300 (336)
T PRK07534 295 ARPRGP 300 (336)
T ss_pred cCCCCC
Confidence 877664
No 10
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=2.5e-59 Score=485.75 Aligned_cols=287 Identities=34% Similarity=0.588 Sum_probs=212.3
Q ss_pred ccccCCCchhhhccccCcccCCCCccccc-------ccCCChHHHHHHHHHHHHH---HHhhc---CCcccccccccCCC
Q psy15811 265 VKLLDGSFTSQVSRHTIKDVDGHPLWSSV-------YLTTEPEACVETHRDFIRG---HIETA---ASIGPYGTVLRDGS 331 (581)
Q Consensus 265 ~~~~dG~~gt~L~~~~g~~~~g~~lws~~-------~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~~~~~~~~ 331 (581)
++++||||||+|+++ |.+.. +++||.. +++++||.|+++|++|++| ||+|| +++.++.++
T Consensus 1 ililDGgmGT~L~~~-g~~~~-~~~~s~~~~~~~~~~~~~~p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~~----- 73 (305)
T PF02574_consen 1 ILILDGGMGTELERR-GLDLN-DPLWSALSHPWNELLNIENPELVRQIHRDYLEAGADIITTNTYQASRERLKEY----- 73 (305)
T ss_dssp -CTT--EEHHCCHHH-HHHHC-TSS----TTT-GGTHHHH-HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGGG-----
T ss_pred CEEeehhhHHHHHhC-CcCcc-ccccccccccchHhhhccCHHHHHHHHHHHHHCCCCeEEecCCcCchhhhhhc-----
Confidence 478999999999999 88764 6788744 6778999999999999999 99999 566666655
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy15811 332 EYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHR 411 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~ 411 (581)
| ++.+..+++|+++|++|++|++++. .+++++|+||+||+|++++ |+||+++|. ++.++++++|+
T Consensus 74 -------g-~~~~~~~~l~~~av~lA~~a~~~~~----~~~~~~VaGsiGP~ga~l~-g~~y~~~~~--~~~~~~~~~~~ 138 (305)
T PF02574_consen 74 -------G-LSDEEAEELNRAAVELAREAADEYG----SGRKVLVAGSIGPYGAYLS-GSEYPGDYG--LSFEELRDFHR 138 (305)
T ss_dssp -------T--GGGCHHHHHHHHHHHHHHHHTT-------TT-SEEEEEEE--S---------CTTCT--T-HHHHHHHHH
T ss_pred -------C-CcHHHHHHHHHHHHHHHHHHHhhcc----CCCccEEEEEcccccccch-hhhcccccc--ccHHHHHHHHH
Confidence 3 5455568999999999999998864 2345999999999999999 999999986 78999999999
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhC---CCCceEEE
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLAN---PDQIQAIG 488 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~---~~~~~~iG 488 (581)
+|++.|.++|||+|+|||||++.|++++++++++.+++|+|+||+|++++++++|+++.+++..+.... ..++++||
T Consensus 139 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iG 218 (305)
T PF02574_consen 139 EQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIG 218 (305)
T ss_dssp HHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEE
T ss_pred HHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEE
Confidence 999999999999999999999999999999999977899999999999999999999998888774321 36889999
Q ss_pred ECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCC-cCHH-HHHHHHHHHHHcCCcEEeecCCCchHHHH
Q psy15811 489 VNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDT-EDEY-SILHYVPQWLEEGVNIIGGCCEVTSYEIQ 566 (581)
Q Consensus 489 iNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~-~~~~-~~~~~~~~w~~~G~~iiGGCCGt~P~hI~ 566 (581)
+||++|..+...|.++.....+.|+++|||+|.+++.. ..|... .+.. +|.+++++|++.|++||||||||||+||+
T Consensus 219 vNC~~~~~~~~~l~~~~~~~~~~~l~vyPNsG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~ 297 (305)
T PF02574_consen 219 VNCTSPPEIMKALLELMSATHDIPLIVYPNSGEPYDVG-KVWSETPEDFAPEWAEFVKEWVEAGARIIGGCCGTTPEHIR 297 (305)
T ss_dssp EESSS-HHHHHHHHHHHHHHT-SEEEEE--SBS-TTSS-GGSTTTTTSHGGG-HHHHHHHHHHHHCEE---TT--HHHHH
T ss_pred cCCCCcHHHHhHHHHHHhccCCceEEEecCCCCCcccc-cccccchhhhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHH
Confidence 99999888777776666542269999999999999888 778653 2222 27889999999999999999999999999
Q ss_pred HHHHHHhc
Q psy15811 567 QMRIMIDE 574 (581)
Q Consensus 567 al~~~l~~ 574 (581)
+|++.+++
T Consensus 298 al~~~l~~ 305 (305)
T PF02574_consen 298 ALAKALDK 305 (305)
T ss_dssp HHHHHTH-
T ss_pred HHHHHhcC
Confidence 99999874
No 11
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-56 Score=438.41 Aligned_cols=283 Identities=24% Similarity=0.289 Sum_probs=244.8
Q ss_pred CCCccccCCCchhhhccccCccc---CCCCcccccccCCChHHHHHHHHHHHHH---HHhhcC---CcccccccccCCCC
Q psy15811 262 NKGVKLLDGSFTSQVSRHTIKDV---DGHPLWSSVYLTTEPEACVETHRDFIRG---HIETAA---SIGPYGTVLRDGSE 332 (581)
Q Consensus 262 nag~~~~dG~~gt~L~~~~g~~~---~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tna---~~~~~~~~~~~~~~ 332 (581)
+..++++||+|||+|++. |++. .|-.-..+.+++++||.|.++|++|++| ||.||| +...+.+|
T Consensus 13 ~~rVLv~DGAmGT~lq~~-~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady------ 85 (311)
T COG0646 13 KERVLVLDGAMGTMLQSY-GLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADY------ 85 (311)
T ss_pred HcCEEEeechhhhhHHhc-CCcHHhhccccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhh------
Confidence 345889999999999998 7743 2211125899999999999999999999 999994 44445554
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy15811 333 YSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRP 412 (581)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~ 412 (581)
+ + ++++.+||++|+++||+|++++. . ++++||+||+||.+..++. ++++ .++++++++.|++
T Consensus 86 ------~-l-ed~v~~in~~aa~iAR~aA~~~~-~---~k~rfVaGsiGPt~k~~~~----~~~~--~v~fd~l~~ay~e 147 (311)
T COG0646 86 ------G-L-EDKVYEINQKAARIARRAADEAG-D---PKPRFVAGSIGPTNKTLSI----SPDF--AVTFDELVEAYRE 147 (311)
T ss_pred ------C-h-HHHHHHHHHHHHHHHHHHHhhcC-C---CCceEEEEeccCcCCcCCc----CCcc--cccHHHHHHHHHH
Confidence 3 6 78899999999999999999874 1 2578999999999976654 2322 4899999999999
Q ss_pred HHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCC-----CeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEE
Q psy15811 413 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPG-----QKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 487 (581)
Q Consensus 413 ~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~-----~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~i 487 (581)
|++.|.+.|||+|+|||+.+..++|+++.++++... +|+|+|.|+.+.|++++|.++++++.++ .+.+++.|
T Consensus 148 q~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l---~~~~~~~v 224 (311)
T COG0646 148 QVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSL---EHLGPDAV 224 (311)
T ss_pred HHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHh---hccCCcEE
Confidence 999999999999999999999999999999997544 9999999999999999999999999998 56689999
Q ss_pred EECC-CCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcC-CcEEeecCCCchHHH
Q psy15811 488 GVNC-VRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEG-VNIIGGCCEVTSYEI 565 (581)
Q Consensus 488 GiNC-~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G-~~iiGGCCGt~P~hI 565 (581)
|+|| .+|+.|.+.|+.+.... +.++.+|||+|.|-..+ ++..|..+|++|+++++.|.+.| ++||||||||||+||
T Consensus 225 GlNCa~Gp~~m~~~l~~ls~~~-~~~vs~~PNAGLP~~~g-~~~~Y~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHI 302 (311)
T COG0646 225 GLNCALGPDEMRPHLRELSRIA-DAFVSVYPNAGLPNAFG-ERAVYDLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHI 302 (311)
T ss_pred eeccccCHHHHHHHHHHHHhcc-CceEEEeCCCCCCcccC-CccccCCCHHHHHHHHHHHHHhCCceeeccccCCCHHHH
Confidence 9999 89999999999999886 79999999999875444 44567788999999999999888 999999999999999
Q ss_pred HHHHHHHhc
Q psy15811 566 QQMRIMIDE 574 (581)
Q Consensus 566 ~al~~~l~~ 574 (581)
++|++.+++
T Consensus 303 raia~~v~~ 311 (311)
T COG0646 303 RAIAEAVKG 311 (311)
T ss_pred HHHHHHhcC
Confidence 999998863
No 12
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=1.6e-54 Score=451.68 Aligned_cols=266 Identities=21% Similarity=0.243 Sum_probs=227.0
Q ss_pred CceEEEeccHHHHHhhCcCCCCCCC-CCccccccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHH
Q psy15811 5 CKVKLLDGSFTSQVSRHTIKDVDGH-PLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALD 83 (581)
Q Consensus 5 ~~ili~DGamgT~L~~~~g~~~~~~-~~ws~~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~ 83 (581)
++++|+||||||+|+++ |+++..+ ++| ++++||+|++||++|++||||||+|||||+|+.+|..+|. ++++++
T Consensus 12 ~~ililDGgmGTeL~~~-G~~~~~~~~lw----si~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~-~~~~~~ 85 (336)
T PRK07534 12 RGVLLADGATGTNLFNM-GLESGEAPELW----NEDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDA-QDRVHE 85 (336)
T ss_pred CCEEEEECHHHHHHHHC-CCCCCCCchHh----cccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCc-HHHHHH
Confidence 56899999999999998 9876542 355 5999999999999999999999999999999999988885 789999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy15811 84 LLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVR 163 (581)
Q Consensus 84 i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~ 163 (581)
+|++||+|||+|++++ ++ +++|+|||||+|.++.|. +++++++++.+|++|++.|++
T Consensus 86 l~~~av~lAr~a~~~~----------~~-----~~~VaGsIGP~g~~l~~~--------~~~~~~e~~~~~~~qi~~l~~ 142 (336)
T PRK07534 86 LNRAAAEIAREVADKA----------GR-----KVIVAGSVGPTGEIMEPM--------GALTHALAVEAFHEQAEGLKA 142 (336)
T ss_pred HHHHHHHHHHHHHHhc----------CC-----ccEEEEecCCCccccCCC--------CCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999763 13 689999999999988763 347899999999999999999
Q ss_pred CCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC-ChhhHH
Q psy15811 164 AGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-RPSHVS 242 (581)
Q Consensus 164 ~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~-~p~~~~ 242 (581)
+|||+|+||||+++.|++++++++++. ++|||+||+++++|+|++|+++++++..+.. ...++++||+||+ +|++|.
T Consensus 143 ~gvD~l~~ET~p~l~E~~a~~~~~~~~-~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~-~~~~~~avGvNC~~gp~~~~ 220 (336)
T PRK07534 143 GGADVLWVETISAPEEIRAAAEAAKLA-GMPWCGTMSFDTAGRTMMGLTPADLADLVEK-LGEPPLAFGANCGVGASDLL 220 (336)
T ss_pred CCCCEEEEeccCCHHHHHHHHHHHHHc-CCeEEEEEEECCCCeeCCCCcHHHHHHHHHh-cCCCceEEEecCCCCHHHHH
Confidence 999999999999999999999999986 9999999999999999999999999988753 2346799999999 699997
Q ss_pred HHHHHHHhhCCCCceEEecCCCc-cccCCCc------------hhhhccccCcccCCCCcccccccCCChHHHHHHHHH
Q psy15811 243 TLVRCIKQSHPTVQTIVYPNKGV-KLLDGSF------------TSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRD 308 (581)
Q Consensus 243 ~~l~~l~~~~~~~p~~~~pnag~-~~~dG~~------------gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~ 308 (581)
+.+..+.....+.|+++|||+|. ...||.. ....... |..+.|+| |.++|++|+++.+.
T Consensus 221 ~~l~~~~~~~~~~pl~vyPNaG~p~~~~~~~~~~~~p~~~~~~~~~~~~~-Ga~iIGGC------CGTtP~hI~~la~~ 292 (336)
T PRK07534 221 RTVLGFTAQGPERPIIAKGNAGIPKYVDGHIHYDGTPELMAEYAVLARDA-GARIIGGC------CGTMPEHLAAMRAA 292 (336)
T ss_pred HHHHHHHHhcCCCeEEEEcCCCCcccCCCccccCCCHHHHHHHHHHHHHc-CCcEEeee------cCCCHHHHHHHHHH
Confidence 76666543336789999999995 4445531 2222233 77788898 99999999999553
No 13
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=1e-53 Score=479.82 Aligned_cols=366 Identities=24% Similarity=0.319 Sum_probs=284.5
Q ss_pred CceEEEeccHHHHHhhCcCCCCCCCCCccccccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHH
Q psy15811 5 CKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDL 84 (581)
Q Consensus 5 ~~ili~DGamgT~L~~~~g~~~~~~~~ws~~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i 84 (581)
++++|+||||||+|+++ |++++. + .+.+++++||.|+++|++|++||||||+|||||+|+.+|.++|+ .++++++
T Consensus 10 ~~~lilDGgmGT~L~~~-G~~~~~-~--~~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~-~~~~~~l 84 (612)
T PRK08645 10 ERVLIADGAMGTLLYSR-GVPLDR-C--FEELNLSHPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGL-EDKVKEI 84 (612)
T ss_pred CCeEEEECHHHHHHHHc-CCCCCC-C--hHHhhccCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCc-hHHHHHH
Confidence 57899999999999998 988753 2 27899999999999999999999999999999999999999999 5889999
Q ss_pred HHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy15811 85 LHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRA 164 (581)
Q Consensus 85 ~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~ 164 (581)
|++||+|||+++++ +++|+|||||+|++ ++|. .+++++++++|++|++.|.++
T Consensus 85 ~~~av~lAr~a~~~------------------~~~VagsiGP~g~~--------~~~~-~~~~~~~~~~~~~~~~~l~~~ 137 (612)
T PRK08645 85 NRAAVRLAREAAGD------------------DVYVAGTIGPIGGR--------GPLG-DISLEEIRREFREQIDALLEE 137 (612)
T ss_pred HHHHHHHHHHHhcC------------------CCeEEEeCCCCCCC--------CCCC-CCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999863 68999999999994 3343 488999999999999999999
Q ss_pred CCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC-ChhhHHH
Q psy15811 165 GVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-RPSHVST 243 (581)
Q Consensus 165 gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~-~p~~~~~ 243 (581)
|||+|++||+++++|++++++++++..++|+|+||+++++|++++|+++++++..+.+ .++++||+||+ +|+++.+
T Consensus 138 gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~---~~~~avGiNC~~~p~~~~~ 214 (612)
T PRK08645 138 GVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALKELVA---AGADVVGLNCGLGPYHMLE 214 (612)
T ss_pred CCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHHHHHh---CCCCEEEecCCCCHHHHHH
Confidence 9999999999999999999999998756999999999999999999999999998864 56999999999 6999999
Q ss_pred HHHHHHhhCCCCceEEecCCCccccCCC----------c---hhhhccccCcccCCCCcccccccCCChHHHHHHHHHHH
Q psy15811 244 LVRCIKQSHPTVQTIVYPNKGVKLLDGS----------F---TSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFI 310 (581)
Q Consensus 244 ~l~~l~~~~~~~p~~~~pnag~~~~dG~----------~---gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl 310 (581)
+|+.+... .++|+++|||+|.+..+++ | ..+..+. |..+.|+| |.++|++|+++.+..
T Consensus 215 ~l~~l~~~-~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~-Ga~iiGGC------Cgt~P~hI~~la~~l- 285 (612)
T PRK08645 215 ALERIPIP-ENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQ-GVRLIGGC------CGTTPEHIRAMARAL- 285 (612)
T ss_pred HHHHHHhc-cCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHh-CCCEEeEe------cCCCHHHHHHHHHHh-
Confidence 99999874 6789999999996443332 1 1122333 77788888 999999999995543
Q ss_pred HHHHhhcCCcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHH---HHHhhhhhcCCCCCceEEeccCCCCCCC
Q psy15811 311 RGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVR---AGVDYLALIKPSISSQTAASIGPYGTVL 387 (581)
Q Consensus 311 ~aiI~Tna~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~---A~~~~~~~~~~~~~v~VagsiGP~g~~~ 387 (581)
+- . .+.+..... . +..+..+.. ..+.+.++...+ +.+.++-.+|.+
T Consensus 286 ~~----~-~~~~~~~~~-------------~---------~~~~~~~~~~~~~~~~~~~~l~~g-~~vs~E~~PPk~--- 334 (612)
T PRK08645 286 KG----L-KPVTEKEVK-------------P---------RPKVVVTEEPLKAKSSLLDKLKKG-KTVIVELDPPKG--- 334 (612)
T ss_pred cc----C-CCccccccc-------------c---------ccccccccccccccchHHHHHhCC-CeEEEEECCCCC---
Confidence 21 1 000000000 0 000000000 011111111112 237788888864
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHhcCCCeEEEEEEEcCCCc
Q psy15811 388 RDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLREFPGQKAWLSFSCKDDTH 462 (581)
Q Consensus 388 ~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~ 462 (581)
.+. +...+.++.|.+.++|+|.+-..+. ......++..+++..++|+++|+||++.++
T Consensus 335 -------------~~~----~~l~~~~~~L~~~~~d~i~Vtd~~~g~~r~~s~~~a~~l~~~~gi~~i~Hltc~d~n~ 395 (612)
T PRK08645 335 -------------LDT----DKFLEGAKALKEAGVDAITLADNPLARVRISNIALASLIKRELGIEPLVHITCRDRNL 395 (612)
T ss_pred -------------CCH----HHHHHHHHHHhcCCCCEEEcCCCCCcccccCHHHHHHHHHHHhCCCeeeEecCCCcCH
Confidence 122 2345677788888899999887775 344666777777656999999999987665
No 14
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-54 Score=422.22 Aligned_cols=274 Identities=36% Similarity=0.603 Sum_probs=239.3
Q ss_pred CceEEEeccHHHHHhhCcCCCCCCCCCccccccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHH
Q psy15811 5 CKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDL 84 (581)
Q Consensus 5 ~~ili~DGamgT~L~~~~g~~~~~~~~ws~~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i 84 (581)
..|+|+||||+|+|++| |.++. .|+||+..+++.||+|+++|.+|++||||||+|+|||++++.+.+. .+.++.+++
T Consensus 8 ~~vliLDGG~~tELe~r-G~~l~-~plWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~-~~~~~~~~l 84 (300)
T COG2040 8 LSVLILDGGLATELERR-GCDLS-DPLWSALALVDEPEIVRNVHADFLRAGADIITTATYQATPEGFAER-VSEDEAKQL 84 (300)
T ss_pred CCEEEecCchhHHHHhc-CCCCC-chhhhhhhcccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHh-cchhHHHHH
Confidence 45999999999999999 99885 5799999999999999999999999999999999999999999998 778999999
Q ss_pred HHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy15811 85 LHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRA 164 (581)
Q Consensus 85 ~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~ 164 (581)
++.+++|||++++.+... ...|+|||||+|+.+.+ ||+|.|. .+.+.++.||+.|+++|.++
T Consensus 85 ~~~sv~la~~ard~~g~~--------------~~~iagsiGP~ga~~a~--Ey~g~Y~--~~~d~~~~fh~~rie~l~~a 146 (300)
T COG2040 85 IRRSVELARAARDAYGEE--------------NQNIAGSLGPYGAALAD--EYRGDYG--ASQDALYKFHRPRIEALNEA 146 (300)
T ss_pred HHHHHHHHHHHHHHhccc--------------ccccceeccchhhhcCh--hhcCccC--ccHHHHHHHHHHHHHHHHhC
Confidence 999999999999987432 34489999999999986 9999996 66777899999999999999
Q ss_pred CCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHH
Q psy15811 165 GVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTL 244 (581)
Q Consensus 165 gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~ 244 (581)
|||+|.+||+|++.|+++++++++++ ++|+|||||+.+++++++|+++.+++..+.+ ..++.++||||++|+++..+
T Consensus 147 g~Dlla~ETip~i~Ea~Aiv~l~~~~-s~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~--~~~iaa~gvNC~~p~~~~a~ 223 (300)
T COG2040 147 GADLLACETLPNITEAEAIVQLVQEF-SKPAWISFTLNDDTRLRDGTPLSEAAAILAG--LPNIAALGVNCCHPDHIPAA 223 (300)
T ss_pred CCcEEeecccCChHHHHHHHHHHHHh-CCceEEEEEeCCCCccCCCccHHHHHHHHhc--CcchhheeeccCChhhhHHH
Confidence 99999999999999999999999998 9999999999999999999999999988765 56899999999999999999
Q ss_pred HHHHHhhCCCCceEEecCCCccc-cCC--C---------chhhhcc--ccCcccCCCCcccccccCCChHHHHHHHHH
Q psy15811 245 VRCIKQSHPTVQTIVYPNKGVKL-LDG--S---------FTSQVSR--HTIKDVDGHPLWSSVYLTTEPEACVETHRD 308 (581)
Q Consensus 245 l~~l~~~~~~~p~~~~pnag~~~-~dG--~---------~gt~L~~--~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~ 308 (581)
++.+....+.+|+++|||+|-.. -++ + ++|.-.+ ..|..+.|+| |.++|.+|.++.+.
T Consensus 224 i~~l~~~~~~~piivYPNSGe~~d~~~k~w~~p~~~~~~~~~~a~~w~~~GA~iiGGC------Crt~p~~I~ei~~~ 295 (300)
T COG2040 224 IEELSKLLTGKPIIVYPNSGEQYDPAGKTWHGPALSADSYSTLAKSWVEAGARIIGGC------CRTGPAHIAEIAKA 295 (300)
T ss_pred HHHHHhcCCCCceEEcCCcccccCcCCCcCCCCCCchhHHHHHHHHHHhcccceeeec------cCCChHHHHHHHHH
Confidence 99996545889999999988321 111 1 2222111 1255667888 99999999888544
No 15
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=7.6e-56 Score=459.72 Aligned_cols=278 Identities=35% Similarity=0.564 Sum_probs=198.4
Q ss_pred eEEEeccHHHHHhhCcCCCCCCCCCccc-------cccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHH
Q psy15811 7 VKLLDGSFTSQVSRHTIKDVDGHPLWSS-------VYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQ 79 (581)
Q Consensus 7 ili~DGamgT~L~~~~g~~~~~~~~ws~-------~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~ 79 (581)
|+||||||||+|+++ |.++. .++||. .+|+++||.|+++|++|++||||||+|||||+|+.+|.++|++.+
T Consensus 1 ililDGgmGT~L~~~-g~~~~-~~~~s~~~~~~~~~~~~~~p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~~g~~~~ 78 (305)
T PF02574_consen 1 ILILDGGMGTELERR-GLDLN-DPLWSALSHPWNELLNIENPELVRQIHRDYLEAGADIITTNTYQASRERLKEYGLSDE 78 (305)
T ss_dssp -CTT--EEHHCCHHH-HHHHC-TSS----TTT-GGTHHHH-HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGGGT-GGG
T ss_pred CEEeehhhHHHHHhC-CcCcc-ccccccccccchHhhhccCHHHHHHHHHHHHHCCCCeEEecCCcCchhhhhhcCCcHH
Confidence 689999999999999 88764 467764 478899999999999999999999999999999999999999755
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy15811 80 EALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVE 159 (581)
Q Consensus 80 ~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~ 159 (581)
.++++|++||++||++++++.. ++ +++|+|||||+|+++. |+||++.| .+++++++++|++|++
T Consensus 79 ~~~~l~~~av~lA~~a~~~~~~--------~~-----~~~VaGsiGP~ga~l~-g~~y~~~~--~~~~~~~~~~~~~q~~ 142 (305)
T PF02574_consen 79 EAEELNRAAVELAREAADEYGS--------GR-----KVLVAGSIGPYGAYLS-GSEYPGDY--GLSFEELRDFHREQAE 142 (305)
T ss_dssp CHHHHHHHHHHHHHHHHTT-----------TT------SEEEEEEE--S---------CTTC--TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccC--------CC-----ccEEEEEcccccccch-hhhccccc--cccHHHHHHHHHHHHH
Confidence 5699999999999999998641 12 6899999999999999 99999977 4899999999999999
Q ss_pred HHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhC---CCCceEEEeCCC
Q psy15811 160 ALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLAN---PDQIQAIGVNCV 236 (581)
Q Consensus 160 ~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~---~~~~~~vGvNC~ 236 (581)
.|+++|||+|+||||+++.|++++++++++..++|+|+||++.+++++++|+++.+++..+.+.. ..++++||+||+
T Consensus 143 ~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvNC~ 222 (305)
T PF02574_consen 143 ALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVNCT 222 (305)
T ss_dssp HHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEESS
T ss_pred HHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcCCC
Confidence 99999999999999999999999999999966899999999999999999999998888776511 268999999999
Q ss_pred ChhhHHHHHHHHHhhCCCCceEEecCCCccccCC--------Cchh----hhccc--cCcccCCCCcccccccCCChHHH
Q psy15811 237 RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDG--------SFTS----QVSRH--TIKDVDGHPLWSSVYLTTEPEAC 302 (581)
Q Consensus 237 ~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG--------~~gt----~L~~~--~g~~~~g~~lws~~~~~~~Pe~v 302 (581)
+|......|..+.....+.|+++|||+|.+...+ .++. .+.+. .|..+.|+| |.++|++|
T Consensus 223 ~~~~~~~~l~~~~~~~~~~~l~vyPNsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGC------CGt~P~hI 296 (305)
T PF02574_consen 223 SPPEIMKALLELMSATHDIPLIVYPNSGEPYDVGKVWSETPEDFAPEWAEFVKEWVEAGARIIGGC------CGTTPEHI 296 (305)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEEE--SBS-TTSSGGSTTTTTSHGGG-HHHHHHHHHHHHCEE---------TT--HHHH
T ss_pred CcHHHHhHHHHHHhccCCceEEEecCCCCCcccccccccchhhhHHHHHHHHHHHHHhCCEEEEeC------CCCCHHHH
Confidence 7655555554444431489999999999554444 1233 22221 255677888 99999999
Q ss_pred HHHHHH
Q psy15811 303 VETHRD 308 (581)
Q Consensus 303 ~~vh~~ 308 (581)
+++++.
T Consensus 297 ~al~~~ 302 (305)
T PF02574_consen 297 RALAKA 302 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999653
No 16
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=7e-53 Score=492.14 Aligned_cols=291 Identities=21% Similarity=0.311 Sum_probs=250.3
Q ss_pred CCccccCCCchhhhccccCcc---cCCC--Cccc-------ccccCCChHHHHHHHHHHHHH---HHhhc---CCccccc
Q psy15811 263 KGVKLLDGSFTSQVSRHTIKD---VDGH--PLWS-------SVYLTTEPEACVETHRDFIRG---HIETA---ASIGPYG 324 (581)
Q Consensus 263 ag~~~~dG~~gt~L~~~~g~~---~~g~--~lws-------~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~ 324 (581)
..++++||||||+|+++ |++ +.|. ++|+ +.+++++||.|+++|++|++| ||+|| ++...+.
T Consensus 17 ~riLIlDGAMGT~Lq~~-gl~~~d~~g~~~~~ws~~l~~~~e~l~lt~Pe~I~~IH~~Yl~AGADII~TNTF~a~~~~L~ 95 (1229)
T PRK09490 17 ERILVLDGAMGTMIQRY-KLEEADYRGERFADWPCDLKGNNDLLVLTQPDVIEAIHRAYLEAGADIIETNTFNATTIAQA 95 (1229)
T ss_pred CCeEEEECcchHHHHHc-CCChhhccccccccccccccCCchhhhcCCHHHHHHHHHHHHHHhCceeecCCCCCCHHHHh
Confidence 45789999999999998 864 2221 4565 588999999999999999999 99999 4444454
Q ss_pred ccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCC--CCCCCCCCCCCCCCCC
Q psy15811 325 TVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTV--LRDGSEYSGHYVDSMT 402 (581)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~--~~~g~eY~g~y~~~~~ 402 (581)
.+ + + ++++.++|++++++||+|++++..+. ++++++|||||||+|.+ ++|++||.| |. .++
T Consensus 96 ~y------------g-l-~~~~~eln~~av~LAreAa~~~~~~~-~~~~~~VAGSIGP~g~~~sl~p~~e~pg-~~-~it 158 (1229)
T PRK09490 96 DY------------G-M-ESLVYELNFAAARLAREAADEWTAKT-PDKPRFVAGVLGPTNRTASISPDVNDPG-FR-NVT 158 (1229)
T ss_pred hC------------C-h-HHHHHHHHHHHHHHHHHHHHHhhhcc-CCCceEEEEecCCCCcccccCCCccccc-cc-CCC
Confidence 44 3 5 67789999999999999998864321 23468999999999954 568999988 44 599
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc-----CCCeEEEEEEEcC-CCcCCCCCcHHHHHHHH
Q psy15811 403 EADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF-----PGQKAWLSFSCKD-DTHTSHGELISSAVTSC 476 (581)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~-----~~~pv~iSft~~~-~~~l~~G~~~~~~~~~l 476 (581)
+++++++|++|++.|.++|||+|+|||+|++.|+++++.++++. .++|+|+||||.+ +|++++|+++++++..+
T Consensus 159 ~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l 238 (1229)
T PRK09490 159 FDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSL 238 (1229)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999964 5799999999975 79999999999999988
Q ss_pred HhhCCCCceEEEECCC-CCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcC-CcEE
Q psy15811 477 LLANPDQIQAIGVNCV-RPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEG-VNII 554 (581)
Q Consensus 477 ~~~~~~~~~~iGiNC~-~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G-~~ii 554 (581)
.+.++++||+||+ +|++|.++|+.+.... +.|+++|||+|.+.... .| ..+|++|++++++|++.| ++||
T Consensus 239 ---~~~~~~avGlNCs~GP~~m~~~l~~l~~~~-~~pi~vyPNAGlP~~~~--~y--d~tPe~~a~~~~~~~~~G~v~II 310 (1229)
T PRK09490 239 ---RHAKPLSIGLNCALGADELRPYVEELSRIA-DTYVSAHPNAGLPNAFG--EY--DETPEEMAAQIGEFAESGFLNIV 310 (1229)
T ss_pred ---hcCCCCEEEEcCCCcHHHHHHHHHHHHHhc-CCeEEEEeCCCCCCCCC--CC--CCCHHHHHHHHHHHHHcCCCCEE
Confidence 4678899999996 8999999999998876 68999999999875322 33 567999999999999999 9999
Q ss_pred eecCCCchHHHHHHHHHHhcccCCC
Q psy15811 555 GGCCEVTSYEIQQMRIMIDEFNTKK 579 (581)
Q Consensus 555 GGCCGt~P~hI~al~~~l~~~~~~~ 579 (581)
||||||||+||++|++.+++.+|+.
T Consensus 311 GGCCGTtPeHI~ala~~l~~~~p~~ 335 (1229)
T PRK09490 311 GGCCGTTPEHIAAIAEAVAGLPPRK 335 (1229)
T ss_pred EecCCCCHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999888864
No 17
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=7.6e-53 Score=491.86 Aligned_cols=280 Identities=21% Similarity=0.300 Sum_probs=239.6
Q ss_pred CceEEEeccHHHHHhhCcCCC---CCCC--CCcc-------ccccCCChHHHHHHHHHHHHhccccccccccccccccHh
Q psy15811 5 CKVKLLDGSFTSQVSRHTIKD---VDGH--PLWS-------SVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLT 72 (581)
Q Consensus 5 ~~ili~DGamgT~L~~~~g~~---~~~~--~~ws-------~~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~ 72 (581)
+++|||||||||+||++ |++ +.+. +.|+ +.+|+++||+|++||++|++||||||+||||++|+.+|.
T Consensus 17 ~riLIlDGAMGT~Lq~~-gl~~~d~~g~~~~~ws~~l~~~~e~l~lt~Pe~I~~IH~~Yl~AGADII~TNTF~a~~~~L~ 95 (1229)
T PRK09490 17 ERILVLDGAMGTMIQRY-KLEEADYRGERFADWPCDLKGNNDLLVLTQPDVIEAIHRAYLEAGADIIETNTFNATTIAQA 95 (1229)
T ss_pred CCeEEEECcchHHHHHc-CCChhhccccccccccccccCCchhhhcCCHHHHHHHHHHHHHHhCceeecCCCCCCHHHHh
Confidence 57999999999999998 874 2221 4554 689999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCC--CCCCCCCCCCCCCCCCHHHH
Q psy15811 73 KLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTV--LRDGSEYSGHYVDSMTEADL 150 (581)
Q Consensus 73 ~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~--~~~~~ey~~~y~~~~~~~~~ 150 (581)
++|+ +++++++|++|++|||+|++++...+ .++ ++||||||||+|.. ++|+.||.| | +.++++++
T Consensus 96 ~ygl-~~~~~eln~~av~LAreAa~~~~~~~-----~~~-----~~~VAGSIGP~g~~~sl~p~~e~pg-~-~~it~del 162 (1229)
T PRK09490 96 DYGM-ESLVYELNFAAARLAREAADEWTAKT-----PDK-----PRFVAGVLGPTNRTASISPDVNDPG-F-RNVTFDEL 162 (1229)
T ss_pred hCCh-HHHHHHHHHHHHHHHHHHHHHhhhcc-----CCC-----ceEEEEecCCCCcccccCCCccccc-c-cCCCHHHH
Confidence 9999 58999999999999999998863211 123 79999999999965 558888887 3 36999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc-----CCCcEEEEEEEcC-CCcCCCCCCHHHHHHHHHhhC
Q psy15811 151 IAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF-----PGQKAWLSFSCKD-DTHTSHGELISSAVTSCLLAN 224 (581)
Q Consensus 151 ~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~-----~~~pv~isft~~~-~g~l~~G~~~~~~~~~~~~~~ 224 (581)
+++|++|+++|+++|||+|+|||++++.|+++++.++++. +++|||+|||+.+ +|+|++|+++++++..+.
T Consensus 163 ~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~--- 239 (1229)
T PRK09490 163 VAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLR--- 239 (1229)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHh---
Confidence 9999999999999999999999999999999999999864 5799999999964 899999999999887774
Q ss_pred CCCceEEEeCCC-ChhhHHHHHHHHHhhCCCCceEEecCCCccccCCC-------chhhhccc--cC-cccCCCCccccc
Q psy15811 225 PDQIQAIGVNCV-RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGS-------FTSQVSRH--TI-KDVDGHPLWSSV 293 (581)
Q Consensus 225 ~~~~~~vGvNC~-~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~-------~gt~L~~~--~g-~~~~g~~lws~~ 293 (581)
..++++||+||+ +|++|.++|+.+.+. ++.|+++|||+|.+...|. |+..+.+. .| ..+.|||
T Consensus 240 ~~~~~avGlNCs~GP~~m~~~l~~l~~~-~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~v~IIGGC----- 313 (1229)
T PRK09490 240 HAKPLSIGLNCALGADELRPYVEELSRI-ADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESGFLNIVGGC----- 313 (1229)
T ss_pred cCCCCEEEEcCCCcHHHHHHHHHHHHHh-cCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEec-----
Confidence 688999999999 899999999999985 7899999999996544443 33333222 26 6777898
Q ss_pred ccCCChHHHHHHHHH
Q psy15811 294 YLTTEPEACVETHRD 308 (581)
Q Consensus 294 ~~~~~Pe~v~~vh~~ 308 (581)
|+|+|+||+++.+.
T Consensus 314 -CGTtPeHI~ala~~ 327 (1229)
T PRK09490 314 -CGTTPEHIAAIAEA 327 (1229)
T ss_pred -CCCCHHHHHHHHHH
Confidence 99999999999554
No 18
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=3.2e-52 Score=488.51 Aligned_cols=290 Identities=20% Similarity=0.284 Sum_probs=250.6
Q ss_pred CCCccccCCCchhhhccccCcccCCCCccc------------ccccCCChHHHHHHHHHHHHH---HHhhc---CCcccc
Q psy15811 262 NKGVKLLDGSFTSQVSRHTIKDVDGHPLWS------------SVYLTTEPEACVETHRDFIRG---HIETA---ASIGPY 323 (581)
Q Consensus 262 nag~~~~dG~~gt~L~~~~g~~~~g~~lws------------~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~ 323 (581)
+..++++||||||+|+++ |++.. +++|+ +.+++++||.|+++|++|++| ||+|| ++..++
T Consensus 2 ~~rilvlDGamGT~Lq~~-gl~~~-d~~g~~~~~~~~~~~~~e~l~lt~Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L 79 (1178)
T TIGR02082 2 NQRILVLDGAMGTQLQSA-NLTEA-DFRGAEFTCHRELKGNNDILNLTKPEVIATIHRAYFEAGADIIETNTFNSTTISQ 79 (1178)
T ss_pred CCceEEEEChhHHHHHhC-CCCcc-ccCcccccccccccCCcHHhhcCCHHHHHHHHHHHHHHhchheecCCccCCHHHH
Confidence 345889999999999999 88763 67785 889999999999999999999 99999 455555
Q ss_pred cccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCC--CCCCCCCCCCCCCC
Q psy15811 324 GTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVL--RDGSEYSGHYVDSM 401 (581)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~--~~g~eY~g~y~~~~ 401 (581)
..+ + + ++++.++|++++++||+|++++.. .++++++|||||||+|.++ .++.||.| |. .+
T Consensus 80 ~~y------------g-~-~~~~~eln~~av~lAr~Aa~~~~~--~~~~~~~VAGsIGP~g~~~~lgp~~~~~~-~~-~~ 141 (1178)
T TIGR02082 80 ADY------------D-L-EDLIYDLNFKGAKLARAVADEFTL--TPEKPRFVAGSMGPTNKTATLSPDVERPG-FR-NV 141 (1178)
T ss_pred hhC------------C-H-HHHHHHHHHHHHHHHHHHHHhhcc--cCCCceEEEEEeCCCCCCccCCCccccCc-cC-CC
Confidence 444 3 5 677899999999999999988642 1234689999999999754 45566655 65 58
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc-----CCCeEEEEEE-EcCCCcCCCCCcHHHHHHH
Q psy15811 402 TEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF-----PGQKAWLSFS-CKDDTHTSHGELISSAVTS 475 (581)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~-----~~~pv~iSft-~~~~~~l~~G~~~~~~~~~ 475 (581)
++++++++|++|++.|.++|||+|++||+|++.|+++++.++++. .++|||+||+ ++++|++++|+++++++..
T Consensus 142 t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~ 221 (1178)
T TIGR02082 142 TYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTS 221 (1178)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999963 5799999955 5678999999999999998
Q ss_pred HHhhCCCCceEEEECCC-CCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHc-CCcE
Q psy15811 476 CLLANPDQIQAIGVNCV-RPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEE-GVNI 553 (581)
Q Consensus 476 l~~~~~~~~~~iGiNC~-~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-G~~i 553 (581)
+ .+.++++||+||+ +|+.|.++|+.|.... +.|+++|||+|.++... .| ..+|++|++++++|++. |++|
T Consensus 222 l---~~~~~~avGlNCs~gP~~m~~~l~~l~~~~-~~pi~vyPNAGlP~~~~--~y--d~~p~~~a~~~~~~~~~ggv~I 293 (1178)
T TIGR02082 222 L---EHAGIDMIGLNCALGPDEMRPHLKHLSEHA-EAYVSCHPNAGLPNAFG--EY--DLTPDELAKALADFAAEGGLNI 293 (1178)
T ss_pred H---hcCCCCEEEeCCCCCHHHHHHHHHHHHHhc-CceEEEEeCCCCCCCCC--cc--cCCHHHHHHHHHHHHHhCCCcE
Confidence 8 4678999999996 8999999999999886 68999999999876532 34 55799999999999987 6999
Q ss_pred EeecCCCchHHHHHHHHHHhcccCCC
Q psy15811 554 IGGCCEVTSYEIQQMRIMIDEFNTKK 579 (581)
Q Consensus 554 iGGCCGt~P~hI~al~~~l~~~~~~~ 579 (581)
|||||||||+||++|++++++.+|++
T Consensus 294 IGGCCGTtPeHI~ala~~l~~~~p~~ 319 (1178)
T TIGR02082 294 VGGCCGTTPDHIRAIAEAVKNIKPRQ 319 (1178)
T ss_pred EEecCCCCHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999888865
No 19
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=5e-52 Score=486.90 Aligned_cols=280 Identities=21% Similarity=0.245 Sum_probs=240.4
Q ss_pred cCceEEEeccHHHHHhhCcCCCCCCCCCcc------------ccccCCChHHHHHHHHHHHHhccccccccccccccccH
Q psy15811 4 ICKVKLLDGSFTSQVSRHTIKDVDGHPLWS------------SVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNL 71 (581)
Q Consensus 4 ~~~ili~DGamgT~L~~~~g~~~~~~~~ws------------~~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l 71 (581)
.++||||||||||+||++ |++.+ ++.|+ +.+|+++||+|++||++|++||||||+||||++|+.+|
T Consensus 2 ~~rilvlDGamGT~Lq~~-gl~~~-d~~g~~~~~~~~~~~~~e~l~lt~Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L 79 (1178)
T TIGR02082 2 NQRILVLDGAMGTQLQSA-NLTEA-DFRGAEFTCHRELKGNNDILNLTKPEVIATIHRAYFEAGADIIETNTFNSTTISQ 79 (1178)
T ss_pred CCceEEEEChhHHHHHhC-CCCcc-ccCcccccccccccCCcHHhhcCCHHHHHHHHHHHHHHhchheecCCccCCHHHH
Confidence 367999999999999999 98754 56775 88999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCC--CCCCCCCCCCCCCCCHHH
Q psy15811 72 TKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVL--RDGSEYSGHYVDSMTEAD 149 (581)
Q Consensus 72 ~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~--~~~~ey~~~y~~~~~~~~ 149 (581)
.++|+ +++++++|++|++|||+|++++... .++ +++|||||||+|..+ .|+.+|.| |. .+++++
T Consensus 80 ~~yg~-~~~~~eln~~av~lAr~Aa~~~~~~------~~~-----~~~VAGsIGP~g~~~~lgp~~~~~~-~~-~~t~de 145 (1178)
T TIGR02082 80 ADYDL-EDLIYDLNFKGAKLARAVADEFTLT------PEK-----PRFVAGSMGPTNKTATLSPDVERPG-FR-NVTYDE 145 (1178)
T ss_pred hhCCH-HHHHHHHHHHHHHHHHHHHHhhccc------CCC-----ceEEEEEeCCCCCCccCCCccccCc-cC-CCCHHH
Confidence 99999 6899999999999999999886321 123 789999999999854 45556655 54 589999
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc-----CCCcEEEEE-EEcCCCcCCCCCCHHHHHHHHHhh
Q psy15811 150 LIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF-----PGQKAWLSF-SCKDDTHTSHGELISSAVTSCLLA 223 (581)
Q Consensus 150 ~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~-----~~~pv~isf-t~~~~g~l~~G~~~~~~~~~~~~~ 223 (581)
++++|++|+++|+++|||+|+|||++++.|+++|+.++++. .++|||+|| +++++|+|++|+++++++..+.
T Consensus 146 l~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~-- 223 (1178)
T TIGR02082 146 LVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLE-- 223 (1178)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHh--
Confidence 99999999999999999999999999999999999999963 479999995 4568899999999999998774
Q ss_pred CCCCceEEEeCCC-ChhhHHHHHHHHHhhCCCCceEEecCCCccccCCC-------chhhhccc---cCcccCCCCcccc
Q psy15811 224 NPDQIQAIGVNCV-RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGS-------FTSQVSRH---TIKDVDGHPLWSS 292 (581)
Q Consensus 224 ~~~~~~~vGvNC~-~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~-------~gt~L~~~---~g~~~~g~~lws~ 292 (581)
..++++||+||+ +|++|.++|+.+.+. ++.|+++|||+|.+...|. |+..+.+. .|..+.|||
T Consensus 224 -~~~~~avGlNCs~gP~~m~~~l~~l~~~-~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~ggv~IIGGC---- 297 (1178)
T TIGR02082 224 -HAGIDMIGLNCALGPDEMRPHLKHLSEH-AEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEGGLNIVGGC---- 297 (1178)
T ss_pred -cCCCCEEEeCCCCCHHHHHHHHHHHHHh-cCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhCCCcEEEec----
Confidence 688999999999 899999999999986 7899999999996544443 33333332 257778898
Q ss_pred cccCCChHHHHHHHHHH
Q psy15811 293 VYLTTEPEACVETHRDF 309 (581)
Q Consensus 293 ~~~~~~Pe~v~~vh~~y 309 (581)
|+|+|+||+++.+..
T Consensus 298 --CGTtPeHI~ala~~l 312 (1178)
T TIGR02082 298 --CGTTPDHIRAIAEAV 312 (1178)
T ss_pred --CCCCHHHHHHHHHHh
Confidence 999999999995543
No 20
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=4e-52 Score=467.01 Aligned_cols=276 Identities=22% Similarity=0.297 Sum_probs=239.6
Q ss_pred CCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc---CCcccccccccCCCCCCC
Q psy15811 262 NKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA---ASIGPYGTVLRDGSEYSG 335 (581)
Q Consensus 262 nag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~~~~~~~~~~~~ 335 (581)
+.+++++||||||+|+++ |.+.. .| .+.+++++||.|+++|++|++| ||+|| ++..++..+
T Consensus 9 ~~~~lilDGgmGT~L~~~-G~~~~-~~--~~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~--------- 75 (612)
T PRK08645 9 KERVLIADGAMGTLLYSR-GVPLD-RC--FEELNLSHPELILRIHREYIEAGADVIQTNTFGANRIKLKRY--------- 75 (612)
T ss_pred cCCeEEEECHHHHHHHHc-CCCCC-CC--hHHhhccCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhc---------
Confidence 445789999999999988 88764 34 3788999999999999999999 99999 666666665
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy15811 336 HYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVE 415 (581)
Q Consensus 336 ~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~ 415 (581)
| + .+++.+++++||++|++|++ ++++|+|||||+|++ ++|. .++.++++++|++|++
T Consensus 76 ---g-~-~~~~~~l~~~av~lAr~a~~---------~~~~VagsiGP~g~~--------~~~~-~~~~~~~~~~~~~~~~ 132 (612)
T PRK08645 76 ---G-L-EDKVKEINRAAVRLAREAAG---------DDVYVAGTIGPIGGR--------GPLG-DISLEEIRREFREQID 132 (612)
T ss_pred ---C-c-hHHHHHHHHHHHHHHHHHhc---------CCCeEEEeCCCCCCC--------CCCC-CCCHHHHHHHHHHHHH
Confidence 3 5 57789999999999999985 148999999999974 3454 3789999999999999
Q ss_pred HHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCC-CC
Q psy15811 416 ALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-RP 494 (581)
Q Consensus 416 ~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~-~p 494 (581)
.|.++|||+|++||+|++.|++++++++++..++|+|+||+|++++++++|+++++++..+. ..++++||+||+ +|
T Consensus 133 ~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~---~~~~~avGiNC~~~p 209 (612)
T PRK08645 133 ALLEEGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALKELV---AAGADVVGLNCGLGP 209 (612)
T ss_pred HHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHHHHH---hCCCCEEEecCCCCH
Confidence 99999999999999999999999999999855599999999999999999999999999983 345899999998 59
Q ss_pred ccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHHHHhc
Q psy15811 495 SHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIDE 574 (581)
Q Consensus 495 ~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~~l~~ 574 (581)
+++.++|+.++... ++|+++|||+|.+...+...| +..+|+.|++++++|++.|++||||||||||+||++|+++++.
T Consensus 210 ~~~~~~l~~l~~~~-~~pl~vypNaG~~~~~~~~~~-~~~~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la~~l~~ 287 (612)
T PRK08645 210 YHMLEALERIPIPE-NAPLSAYPNAGLPEYVDGRYV-YSANPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMARALKG 287 (612)
T ss_pred HHHHHHHHHHHhcc-CceEEEEECCCCCCCCCCccc-cCCCHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHHHHhcc
Confidence 99999999998755 589999999998643332333 2347889999999999999999999999999999999999987
Q ss_pred ccCC
Q psy15811 575 FNTK 578 (581)
Q Consensus 575 ~~~~ 578 (581)
.+|.
T Consensus 288 ~~~~ 291 (612)
T PRK08645 288 LKPV 291 (612)
T ss_pred CCCc
Confidence 7763
No 21
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.29 E-value=2.3 Score=40.45 Aligned_cols=140 Identities=11% Similarity=0.046 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHH-hcC--CCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCce
Q psy15811 409 WHRPNVEALVRAGVDYLALETIPAEKEALALVKLLR-EFP--GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 409 ~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~-~~~--~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~ 485 (581)
..++.++.+.+.|+|.|.+-- .+++.++ ... .+|+++........ ....+.++.++.....+++
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~~~~v~~~v~~~~~~-----~~~~~~~~~a~~a~~~Gad 80 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGSDVPVIVVVGFPTGL-----TTTEVKVAEVEEAIDLGAD 80 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCCCCeEEEEecCCCCC-----CcHHHHHHHHHHHHHcCCC
Confidence 355667777779999986654 2333333 223 47888777542211 2245555555444456788
Q ss_pred EEEECCC---C----CccchHHHHHHHhhC-CCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeec
Q psy15811 486 AIGVNCV---R----PSHVSTLVRCIKQSH-PTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGC 557 (581)
Q Consensus 486 ~iGiNC~---~----p~~~~~~l~~l~~~~-~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGC 557 (581)
++.+-+. . ++.+...++++.... .+.|+++|.+-+.. .+++...+.++...+.|+..|==.
T Consensus 81 ~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-----------~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 81 EIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-----------KTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred EEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-----------CCHHHHHHHHHHHHHhCCCEEEeC
Confidence 7777552 1 233445555666552 26899999985422 124455665555566777777544
Q ss_pred CC-----CchHHHHHHHHHH
Q psy15811 558 CE-----VTSYEIQQMRIMI 572 (581)
Q Consensus 558 CG-----t~P~hI~al~~~l 572 (581)
.| .+..+++.+++.+
T Consensus 150 ~~~~~~~~~~~~~~~i~~~~ 169 (201)
T cd00945 150 TGFGGGGATVEDVKLMKEAV 169 (201)
T ss_pred CCCCCCCCCHHHHHHHHHhc
Confidence 44 3677887777665
No 22
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=93.30 E-value=6.1 Score=40.13 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=42.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCH-----------HHHHHHHHHHHhcCCCeEEEEE
Q psy15811 395 GHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAE-----------KEALALVKLLREFPGQKAWLSF 455 (581)
Q Consensus 395 g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~-----------~Ea~a~~~~~~~~~~~pv~iSf 455 (581)
+.|.. +.+++.++-.+-++.|.++|+|.|++|.+.+. .-+-.++..+++..++|+=+.+
T Consensus 18 p~~~~--~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnv 87 (254)
T PF03437_consen 18 PRYDG--SMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNV 87 (254)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeee
Confidence 44553 89999999999999999999999999998863 2222333444544577765544
No 23
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.61 E-value=1.9 Score=43.56 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEE
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSF 199 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isf 199 (581)
--++++.+.++|+|.+++++..+.++++.+.+. .+.|+.+-.
T Consensus 162 ai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~----~~~Pl~~~~ 203 (243)
T cd00377 162 AIERAKAYAEAGADGIFVEGLKDPEEIRAFAEA----PDVPLNVNM 203 (243)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhc----CCCCEEEEe
Confidence 456889999999999999999999888877665 368888753
No 24
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.99 E-value=2 Score=43.29 Aligned_cols=104 Identities=17% Similarity=0.110 Sum_probs=66.6
Q ss_pred HHHHHHHHhCCCCEEEecccC--------------CHHHHHHHHHHHHhcC-C-CeEEEEEEEcCCCcCCCCCcHHHHHH
Q psy15811 411 RPNVEALVRAGVDYLALETIP--------------AEKEALALVKLLREFP-G-QKAWLSFSCKDDTHTSHGELISSAVT 474 (581)
Q Consensus 411 ~~~~~~l~~~gvD~i~~ET~p--------------~~~Ea~a~~~~~~~~~-~-~pv~iSft~~~~~~l~~G~~~~~~~~ 474 (581)
.+.++.+.++||+.|.+|+.. +..|...-++++++.. + .+++|-. +.+........++++++
T Consensus 87 ~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiA--RTDa~~~~~~~~~eai~ 164 (243)
T cd00377 87 ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIA--RTDALLAGEEGLDEAIE 164 (243)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEE--EcCchhccCCCHHHHHH
Confidence 355777888999999998754 4667777777776422 2 2444443 33333222257999999
Q ss_pred HHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCC
Q psy15811 475 SCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKG 520 (581)
Q Consensus 475 ~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag 520 (581)
..+.....+++++-+-+ |. -..-++.+.+.. +.|+++|+..+
T Consensus 165 Ra~ay~~AGAD~v~v~~--~~-~~~~~~~~~~~~-~~Pl~~~~~~~ 206 (243)
T cd00377 165 RAKAYAEAGADGIFVEG--LK-DPEEIRAFAEAP-DVPLNVNMTPG 206 (243)
T ss_pred HHHHHHHcCCCEEEeCC--CC-CHHHHHHHHhcC-CCCEEEEecCC
Confidence 98777778888777765 22 223444454444 68999997655
No 25
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=91.73 E-value=5.5 Score=39.27 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=52.2
Q ss_pred HHHHHHHHHHCCCcEEEEEcc----CCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCce
Q psy15811 154 HRPNVEALVRAGVDYLALETI----PAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ 229 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~----~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~ 229 (581)
+.+|++.+.++|+|++++-.- ++..+....++.+++..++|+++.. .+++++... . ..|++
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v-----------~t~~ea~~a-~---~~G~d 145 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADI-----------STLEEALNA-A---KLGFD 145 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEEC-----------CCHHHHHHH-H---HcCCC
Confidence 446889999999998877421 2223566677777664347777632 245555433 2 46889
Q ss_pred EEEeC-CC-Ch------hhHHHHHHHHHhhCCCCceE
Q psy15811 230 AIGVN-CV-RP------SHVSTLVRCIKQSHPTVQTI 258 (581)
Q Consensus 230 ~vGvN-C~-~p------~~~~~~l~~l~~~~~~~p~~ 258 (581)
.+++| .. .+ ....+.++.+++. .++|++
T Consensus 146 ~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~-~~ipvi 181 (219)
T cd04729 146 IIGTTLSGYTEETAKTEDPDFELLKELRKA-LGIPVI 181 (219)
T ss_pred EEEccCccccccccCCCCCCHHHHHHHHHh-cCCCEE
Confidence 99875 31 01 1123566777664 345544
No 26
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=91.47 E-value=8.2 Score=40.13 Aligned_cols=185 Identities=17% Similarity=0.195 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCceEEec--cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15811 349 WHRPNVEALVRAGVDYLALIKPSISSQTAAS--IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLA 426 (581)
Q Consensus 349 l~~~av~lA~~A~~~~~~~~~~~~~v~Vags--iGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~ 426 (581)
+..++++..++..- ..+|... +-||-.+=+.|-- . .+.++.++..+...+++-.+.++|+|++.
T Consensus 95 ~v~~air~iK~~~p----------~l~vi~DVclc~YT~hGHcGil-~---~~~idND~Tl~~L~~~Avs~A~AGADiVA 160 (320)
T cd04823 95 LVCRAIRAIKEAFP----------ELGIITDVALDPYTSHGHDGIV-R---DGGILNDETVEVLCKQALVQAEAGADIVA 160 (320)
T ss_pred hHHHHHHHHHHhCC----------CcEEEEeeeccCCCCCCcceec-c---CCcCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 55666766555421 2455554 4566543222210 0 02367888899999999999999999998
Q ss_pred ecccCCHHHHHHHHHHHHh--cCCCeEEEEEEEc----------C-------CC----cCCCCCcHHHHHHHHHhhCCCC
Q psy15811 427 LETIPAEKEALALVKLLRE--FPGQKAWLSFSCK----------D-------DT----HTSHGELISSAVTSCLLANPDQ 483 (581)
Q Consensus 427 ~ET~p~~~Ea~a~~~~~~~--~~~~pv~iSft~~----------~-------~~----~l~~G~~~~~~~~~l~~~~~~~ 483 (581)
=-.|-+- ...++.+++.+ +.++|++ |.+.+ + .| .-++-..-.++++.+.....-+
T Consensus 161 PSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EG 238 (320)
T cd04823 161 PSDMMDG-RIGAIREALDAEGFTNVSIL-SYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEG 238 (320)
T ss_pred cccchhh-HHHHHHHHHHHCCCCCCcee-echHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhC
Confidence 4443331 23355555554 3456644 66543 0 01 1122222345555443222346
Q ss_pred ceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCC---CcccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 484 IQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGG---VWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 484 ~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
++.+.|-=..| .+.+++.++... +.|+.+|--+|+ .+.....+|.+. ..-+.|....+..+|+.+|
T Consensus 239 AD~lMVKPal~--YLDIi~~~k~~~-~lPvaaYqVSGEYaMikaAa~~G~~d~--~~~~~Esl~~ikRAGAd~I 307 (320)
T cd04823 239 ADMVMVKPGMP--YLDIIRRVKDEF-GVPTFAYQVSGEYAMLKAAAQNGWLDE--DKVMLESLLAFKRAGADGI 307 (320)
T ss_pred CCEEEEcCCch--HHHHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhcCCCEE
Confidence 67777764222 456677777766 699999999995 222223567654 3356777788888898876
No 27
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=91.38 E-value=2.2 Score=43.63 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=69.9
Q ss_pred eEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEE
Q psy15811 118 IETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWL 197 (581)
Q Consensus 118 ~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~i 197 (581)
.+|.+++ |+|.+ ..+.+++ .+.-.+.+.++||+.+-+|-- .|...-++++.+. ++||+-
T Consensus 77 p~vvaD~-pfg~y-------------~~~~~~a---v~~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~a-gIpV~g 135 (264)
T PRK00311 77 ALVVADM-PFGSY-------------QASPEQA---LRNAGRLMKEAGAHAVKLEGG---EEVAETIKRLVER-GIPVMG 135 (264)
T ss_pred CcEEEeC-CCCCc-------------cCCHHHH---HHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHC-CCCEee
Confidence 3566788 77652 1233332 333344455599999999974 4666667777764 899873
Q ss_pred EEEEc------CCCcCCCCCCH---HHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCceEE
Q psy15811 198 SFSCK------DDTHTSHGELI---SSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 198 sft~~------~~g~l~~G~~~---~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
-+=+. .+|...-|.+- .++++.+......|++++=+-|. |. +..+.+.+. .++|++-
T Consensus 136 HiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v-~~---~~~~~i~~~-l~iP~ig 201 (264)
T PRK00311 136 HLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV-PA---ELAKEITEA-LSIPTIG 201 (264)
T ss_pred eecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC-CH---HHHHHHHHh-CCCCEEE
Confidence 32221 23444455553 45555554455799999999999 43 344555543 5567654
No 28
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=91.33 E-value=6.6 Score=40.60 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=76.2
Q ss_pred EEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEE-c-----cCCHHHHHHHHHHHHhc--
Q psy15811 119 ETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE-T-----IPAEKEALALVKLLREF-- 190 (581)
Q Consensus 119 ~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E-T-----~~~~~E~~aa~~a~~~~-- 190 (581)
++...+-|+.+ .+.++++. ++..++.+++.|||.|++- | .-+.+|=+.+++.+.+.
T Consensus 4 i~~a~vTPf~~------------dg~iD~~~----l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~ 67 (289)
T cd00951 4 LLSFPVTHFDA------------DGSFDEDA----YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA 67 (289)
T ss_pred eEEEeecCCCC------------CCCcCHHH----HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC
Confidence 34556677654 23577655 5677888889999998654 2 33677777777766543
Q ss_pred CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC-----ChhhHHHHHHHHHhhCCCCceEEec
Q psy15811 191 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-----RPSHVSTLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 191 ~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~-----~p~~~~~~l~~l~~~~~~~p~~~~p 261 (581)
..+||++.... +..++++.+..+...|++++.+=-- .++.+....+.+... +++|+++|=
T Consensus 68 ~~~pvi~gv~~----------~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~-~~~pi~lYn 132 (289)
T cd00951 68 GRVPVLAGAGY----------GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKS-TDLGVIVYN 132 (289)
T ss_pred CCCCEEEecCC----------CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhc-CCCCEEEEe
Confidence 35899986532 2345555444444688888887542 235666777777664 789999994
No 29
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=91.31 E-value=3.1 Score=42.37 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=89.5
Q ss_pred HHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCC
Q psy15811 51 FIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTV 130 (581)
Q Consensus 51 yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~ 130 (581)
.-+||.|+|.|-...++. .+|++ +-..--....+..++.++... . +.+|.++| |++.
T Consensus 31 ~~~aG~d~ilvGdSlgm~----~lG~~-~t~~vtldem~~h~~aV~rg~-----------~-----~~~vv~Dm-Pf~s- 87 (263)
T TIGR00222 31 FADAGVDVILVGDSLGMV----VLGHD-STLPVTVADMIYHTAAVKRGA-----------P-----NCLIVTDL-PFMS- 87 (263)
T ss_pred HHHcCCCEEEECccHhHH----hcCCC-CCCCcCHHHHHHHHHHHHhhC-----------C-----CceEEeCC-CcCC-
Confidence 457999998877554433 35552 110001222233334443321 1 56777776 4442
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEE-------EEEEEcC
Q psy15811 131 LRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAW-------LSFSCKD 203 (581)
Q Consensus 131 ~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~-------isft~~~ 203 (581)
| . + ..+.++.-.+.+.++|+|.+=+|-- .|....++++.+. ++||+ .+....
T Consensus 88 ------y----~---~---~e~a~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~~-gIpV~gHiGltPq~a~~~- 146 (263)
T TIGR00222 88 ------Y----A---T---PEQALKNAARVMQETGANAVKLEGG---EWLVETVQMLTER-GVPVVGHLGLTPQSVNIL- 146 (263)
T ss_pred ------C----C---C---HHHHHHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHHC-CCCEEEecCCCceeEeec-
Confidence 1 1 1 2334444456666699999999963 4555556666664 89998 444332
Q ss_pred CCcCCCCCCHH---HHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCceEE
Q psy15811 204 DTHTSHGELIS---SAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 204 ~g~l~~G~~~~---~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
+|...-|.+.+ ++++.+......|++++=+-|..++ +.+.+.+. .++|++=
T Consensus 147 ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~vp~~----~a~~It~~-l~iP~iG 200 (263)
T TIGR00222 147 GGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLECVPVE----LAAKITEA-LAIPVIG 200 (263)
T ss_pred CCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH----HHHHHHHh-CCCCEEe
Confidence 34555576654 4444443344799999999998643 34444443 4566543
No 30
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=91.28 E-value=6 Score=40.23 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=65.2
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCc------CCCCCc---HHHHHHHHHhhCCC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTH------TSHGEL---ISSAVTSCLLANPD 482 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~------l~~G~~---~~~~~~~l~~~~~~ 482 (581)
...+.+.++|++.+-+|.- .|....++++.+ .++||+-|+-+.+... ...|-+ .+++++..+.....
T Consensus 95 ~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~A 170 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG---AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEA 170 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHC
Confidence 3444555699999999996 466777777776 6999997776644322 222322 56777777666678
Q ss_pred CceEEEECCCCCccchHHHHHHHhhCCCCeEEEee
Q psy15811 483 QIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYP 517 (581)
Q Consensus 483 ~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~yp 517 (581)
++++|=+-|.. + ++++.+.... ++|++-.-
T Consensus 171 GA~~i~lE~v~-~---~~~~~i~~~v-~iP~igiG 200 (254)
T cd06557 171 GAFALVLECVP-A---ELAKEITEAL-SIPTIGIG 200 (254)
T ss_pred CCCEEEEcCCC-H---HHHHHHHHhC-CCCEEEec
Confidence 99999999973 2 3556666654 57866443
No 31
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.27 E-value=4.1 Score=42.90 Aligned_cols=84 Identities=11% Similarity=0.233 Sum_probs=55.7
Q ss_pred HHHHHHHHHHCCC--cEEEEE-ccCCHHHHHHHHHHHHh-cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCce
Q psy15811 154 HRPNVEALVRAGV--DYLALE-TIPAEKEALALVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ 229 (581)
Q Consensus 154 ~~~q~~~l~~~gv--D~l~~E-T~~~~~E~~aa~~a~~~-~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~ 229 (581)
..++++.|+++|+ |+|.+- |.++...+...++.+|+ .++.||++- .. .+.+++.. +. ..|++
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g-------~V---~t~e~a~~-l~---~aGad 163 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAG-------NV---GTPEAVRE-LE---NAGAD 163 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEE-------ec---CCHHHHHH-HH---HcCcC
Confidence 3478999999965 999986 66788888888888885 467888861 11 14555543 33 47888
Q ss_pred EE------EeCCC-C-------hhhHHHHHHHHHhh
Q psy15811 230 AI------GVNCV-R-------PSHVSTLVRCIKQS 251 (581)
Q Consensus 230 ~v------GvNC~-~-------p~~~~~~l~~l~~~ 251 (581)
++ |-||. . |+....+++.+.+.
T Consensus 164 ~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~ 199 (326)
T PRK05458 164 ATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA 199 (326)
T ss_pred EEEECCCCCcccccccccCCCCCccHHHHHHHHHHH
Confidence 77 66774 2 33344556666653
No 32
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=90.76 E-value=10 Score=36.73 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCCEEEec-----ccCCHHHHHHHHHHHHhcCCCeEEEEEEEcC
Q psy15811 408 AWHRPNVEALVRAGVDYLALE-----TIPAEKEALALVKLLREFPGQKAWLSFSCKD 459 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~E-----T~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~ 459 (581)
....+.++.+.++|+|.|=+= .+|+......+++.+++.++.|+.+++.+.+
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~ 67 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVEN 67 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCC
Confidence 455688899999999998663 3344444455666666556778777777753
No 33
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=90.66 E-value=11 Score=39.24 Aligned_cols=185 Identities=16% Similarity=0.168 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCceEEe--ccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15811 349 WHRPNVEALVRAGVDYLALIKPSISSQTAA--SIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLA 426 (581)
Q Consensus 349 l~~~av~lA~~A~~~~~~~~~~~~~v~Vag--siGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~ 426 (581)
+..++++..+++.- ...|.. ++-||..+=+.|--- .+.++.++..+.+.+++-...++|+|++.
T Consensus 90 ~v~~air~iK~~~p----------~l~vi~DvcLc~YT~hGHcGil~----~~~idND~Tl~~L~k~Als~A~AGADiVA 155 (314)
T cd00384 90 IVQRAIRAIKEAVP----------ELVVITDVCLCEYTDHGHCGILK----DDYVDNDATLELLAKIAVSHAEAGADIVA 155 (314)
T ss_pred hHHHHHHHHHHhCC----------CcEEEEeeeccCCCCCCcceecc----CCcCccHHHHHHHHHHHHHHHHcCCCeee
Confidence 55667766665431 244444 355665432222110 12467888899999999999999999998
Q ss_pred ecccCCHHHHHHHHHHHHh--cCCCeEEEEEEEc--------------------CC-CcCCCCCcHHHHHHHHHhhCCCC
Q psy15811 427 LETIPAEKEALALVKLLRE--FPGQKAWLSFSCK--------------------DD-THTSHGELISSAVTSCLLANPDQ 483 (581)
Q Consensus 427 ~ET~p~~~Ea~a~~~~~~~--~~~~pv~iSft~~--------------------~~-~~l~~G~~~~~~~~~l~~~~~~~ 483 (581)
=-.|-+- ...++.+++.+ +.++|++ |.+.+ |+ ..-++--.-.++++.+.....-+
T Consensus 156 PSdMMDG-rV~aIR~aLd~~g~~~v~Im-sYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EG 233 (314)
T cd00384 156 PSDMMDG-RVAAIREALDEAGFSDVPIM-SYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEG 233 (314)
T ss_pred ccccccc-HHHHHHHHHHHCCCCCCcee-ecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhC
Confidence 5444431 23455566654 3455644 65543 00 11122223345555442222346
Q ss_pred ceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCC---CcccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 484 IQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGG---VWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 484 ~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
++.|.|.=..| .+.+++.++... ++|+.+|--+|+ .......+|.+. ..-+.|....+..+|+.+|
T Consensus 234 AD~lMVKPal~--YLDIi~~~k~~~-~~PvaaYqVSGEYaMikaAa~~G~id~--~~~~~Esl~~~kRAGAd~I 302 (314)
T cd00384 234 ADILMVKPALA--YLDIIRDVRERF-DLPVAAYNVSGEYAMIKAAAKNGWIDE--ERVVLESLTSIKRAGADLI 302 (314)
T ss_pred CCEEEEcCCch--HHHHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHcCCccH--HHHHHHHHHHHHhcCCCEE
Confidence 67777665222 456677777766 799999999995 122223568654 3356777788888998876
No 34
>PLN02591 tryptophan synthase
Probab=90.62 E-value=8.4 Score=39.05 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=56.8
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
+.+-++.+.++|||-+++--+| ++|....+..+++. ++..+. .+.+ ++-.+-+..+.+....-+=.|+.
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~-gl~~I~--lv~P-------tt~~~ri~~ia~~~~gFIY~Vs~ 163 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKN-GIELVL--LTTP-------TTPTERMKAIAEASEGFVYLVSS 163 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHc-CCeEEE--EeCC-------CCCHHHHHHHHHhCCCcEEEeeC
Confidence 3444667778999999998887 48888899999876 655443 1211 11122223332212222334454
Q ss_pred CCC-C-----hhhHHHHHHHHHhhCCCCceEE
Q psy15811 234 NCV-R-----PSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 234 NC~-~-----p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
+=+ | |..+...++.+++. +++|+.+
T Consensus 164 ~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~v 194 (250)
T PLN02591 164 TGVTGARASVSGRVESLLQELKEV-TDKPVAV 194 (250)
T ss_pred CCCcCCCcCCchhHHHHHHHHHhc-CCCceEE
Confidence 432 2 67778888888885 7777765
No 35
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.62 E-value=3.3 Score=42.92 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=55.8
Q ss_pred HHHHHCCCcEEEEEccCCHH-------------------------HHHHHHHHHHh---cCCCcEEEEEEEcCCCcCCCC
Q psy15811 159 EALVRAGVDYLALETIPAEK-------------------------EALALVKLLRE---FPGQKAWLSFSCKDDTHTSHG 210 (581)
Q Consensus 159 ~~l~~~gvD~l~~ET~~~~~-------------------------E~~aa~~a~~~---~~~~pv~isft~~~~g~l~~G 210 (581)
+.+.+.|++++..+|+.... .....++-+++ ..+.|+++|+. |
T Consensus 29 ~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~qi~---------g 99 (300)
T TIGR01037 29 RRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASVY---------G 99 (300)
T ss_pred HHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEEee---------c
Confidence 34566799999987665320 12222333321 12569999884 3
Q ss_pred CCHHHHHHHHHhhCC--CCceEEEeCCCCh-------------hhHHHHHHHHHhhCCCCceEEecC
Q psy15811 211 ELISSAVTSCLLANP--DQIQAIGVNCVRP-------------SHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 211 ~~~~~~~~~~~~~~~--~~~~~vGvNC~~p-------------~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
.++++.+..+..... .++++|=+||++| +.+.++++.+++. .+.|++++-+
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~-~~~pv~vKi~ 165 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK-TDVPVFAKLS 165 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEECC
Confidence 344444433322222 2489999999855 4566777888775 5788888754
No 36
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=90.58 E-value=5.2 Score=40.67 Aligned_cols=117 Identities=19% Similarity=0.247 Sum_probs=72.3
Q ss_pred CeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEE
Q psy15811 117 HIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAW 196 (581)
Q Consensus 117 ~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~ 196 (581)
..+|.+++ |+|.+. .+.+++ .+.-.+.+.++||+.+-+|-- .|...-++++.+. +.||+
T Consensus 73 ~p~viaD~-~fg~y~-------------~~~~~a---v~~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~a-gipV~ 131 (254)
T cd06557 73 RALVVADM-PFGSYQ-------------TSPEQA---LRNAARLMKEAGADAVKLEGG---AEVAETIRALVDA-GIPVM 131 (254)
T ss_pred CCeEEEeC-CCCccc-------------CCHHHH---HHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHc-CCCee
Confidence 34566788 777531 234444 333344455699999999974 4777777888774 88988
Q ss_pred EEEEEc------CCCcCCCCCC---HHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCceEE
Q psy15811 197 LSFSCK------DDTHTSHGEL---ISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 197 isft~~------~~g~l~~G~~---~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
--+-+. .+|...-|.+ .+++++.+......|++++=+-|. |. +.++.+.+. .++|++=
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v-~~---~~~~~i~~~-v~iP~ig 198 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECV-PA---ELAKEITEA-LSIPTIG 198 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC-CH---HHHHHHHHh-CCCCEEE
Confidence 443332 1333444544 455565555455799999999998 43 355555554 5566653
No 37
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=90.46 E-value=3.7 Score=42.04 Aligned_cols=105 Identities=16% Similarity=0.144 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCcEEEEE-c-----cCCHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCcCCCCCCHHH
Q psy15811 144 SMTEADLIAWHRPNVEALVRAGVDYLALE-T-----IPAEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISS 215 (581)
Q Consensus 144 ~~~~~~~~~~~~~q~~~l~~~gvD~l~~E-T-----~~~~~E~~aa~~a~~~~--~~~pv~isft~~~~g~l~~G~~~~~ 215 (581)
.++++. ++++++.+++.|||.|++= | .-+.+|-+.+++.+.+. ..+|+++... +.+..+
T Consensus 14 ~iD~~~----~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~ 80 (281)
T cd00408 14 EVDLDA----LRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------ANSTRE 80 (281)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC---------CccHHH
Confidence 566644 5677888888999998743 2 23678888888877653 2588887552 234456
Q ss_pred HHHHHHhhCCCCceEEEeCCC-----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 216 AVTSCLLANPDQIQAIGVNCV-----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 216 ~~~~~~~~~~~~~~~vGvNC~-----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
+++.+..+...|++++.+--- .++.+....+.+... +++|+++|-+
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~-~~~pi~iYn~ 131 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA-SDLPVILYNI 131 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 666555455789999998762 346677777777775 7899999944
No 38
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=90.37 E-value=11 Score=39.22 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCceEEec--cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15811 349 WHRPNVEALVRAGVDYLALIKPSISSQTAAS--IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLA 426 (581)
Q Consensus 349 l~~~av~lA~~A~~~~~~~~~~~~~v~Vags--iGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~ 426 (581)
+..++++..+++.. ..+|... +-||-.+=+.|-- +. +.++.++..+...+|+-.+.++|+|++.
T Consensus 98 ~v~rair~iK~~~p----------~l~vi~DVcLc~YT~hGHcGil---~~-g~idND~Tl~~L~~~Al~~A~AGaDiVA 163 (323)
T PRK09283 98 LVQRAIRAIKKAFP----------ELGVITDVCLDEYTSHGHCGIL---ED-GYVDNDETLELLAKQALSQAEAGADIVA 163 (323)
T ss_pred HHHHHHHHHHHhCC----------CcEEEEeeeccCCCCCCceecc---cC-CcCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 55667766665431 2455554 4566543222210 00 3467888899999999999999999998
Q ss_pred ecccCCHHHHHHHHHHHHh--cCCCeEEEEEEEc--------------------C-CCcCCCCCcHHHHHHHHHhhCCCC
Q psy15811 427 LETIPAEKEALALVKLLRE--FPGQKAWLSFSCK--------------------D-DTHTSHGELISSAVTSCLLANPDQ 483 (581)
Q Consensus 427 ~ET~p~~~Ea~a~~~~~~~--~~~~pv~iSft~~--------------------~-~~~l~~G~~~~~~~~~l~~~~~~~ 483 (581)
=-.|-+- ...++.+++.+ +.+++++ |.+.+ | ...-++--.-.++++.+.....-+
T Consensus 164 PSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EG 241 (323)
T PRK09283 164 PSDMMDG-RVGAIREALDEAGFTDVPIM-SYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEG 241 (323)
T ss_pred ccccccc-HHHHHHHHHHHCCCCCCcee-ecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhC
Confidence 5544442 23455556654 3455543 66543 0 011222233445555543222346
Q ss_pred ceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCC---CcccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 484 IQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGG---VWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 484 ~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
++.|.|-=..| .+.+++.++... ++|+.+|--+|+ .......+|.+. ...+.|....+..+|+.+|
T Consensus 242 AD~lMVKPal~--YLDIi~~~k~~~-~~PvaaYqVSGEYaMikaAa~~G~~D~--~~~~~Esl~~~kRAGAd~I 310 (323)
T PRK09283 242 ADMVMVKPALP--YLDIIRRVKDEF-NLPVAAYQVSGEYAMIKAAAQNGWIDE--ERVVLESLLSIKRAGADGI 310 (323)
T ss_pred CCEEEEcCCch--HHHHHHHHHhcC-CCCEEEEEccHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCCEE
Confidence 67777765222 456677777776 699999999995 122222567653 3357777788888898876
No 39
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=90.35 E-value=4 Score=42.29 Aligned_cols=107 Identities=12% Similarity=0.055 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-CcEEEEE------ccCCHHHHHHHHHHHHhc-C-CCcEEEEEEEcCCCcCCCCCCHH
Q psy15811 144 SMTEADLIAWHRPNVEALVRAG-VDYLALE------TIPAEKEALALVKLLREF-P-GQKAWLSFSCKDDTHTSHGELIS 214 (581)
Q Consensus 144 ~~~~~~~~~~~~~q~~~l~~~g-vD~l~~E------T~~~~~E~~aa~~a~~~~-~-~~pv~isft~~~~g~l~~G~~~~ 214 (581)
.++.+ .++++++.+++.| ||.|++= ..-+.+|-+..++.+.+. . .+||++... +.+..
T Consensus 17 ~iD~~----~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~~~t~ 83 (290)
T TIGR00683 17 TINEK----GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG---------SVNLK 83 (290)
T ss_pred CcCHH----HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------CCCHH
Confidence 46654 4567788888999 9998653 344788888888766643 2 478887552 23456
Q ss_pred HHHHHHHhhCCCCceEEEeC-----CCChhhHHHHHHHHHhhCCCCceEEecCC
Q psy15811 215 SAVTSCLLANPDQIQAIGVN-----CVRPSHVSTLVRCIKQSHPTVQTIVYPNK 263 (581)
Q Consensus 215 ~~~~~~~~~~~~~~~~vGvN-----C~~p~~~~~~l~~l~~~~~~~p~~~~pna 263 (581)
++++.+..+...|++++.+= +...+.+....+.+.....++|+++|-+-
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 66665554456888888772 22346677777777554237999999543
No 40
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=90.34 E-value=4.3 Score=45.43 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=55.4
Q ss_pred CCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccC-CHHHHHHHHHHHHh-cCCC
Q psy15811 116 GHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIP-AEKEALALVKLLRE-FPGQ 193 (581)
Q Consensus 116 ~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~-~~~E~~aa~~a~~~-~~~~ 193 (581)
++.+|++++|+..+ ..++++.|+++|||+|.+-+-. +-......++.+|+ .+++
T Consensus 235 ~~l~vgaavg~~~~------------------------~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~ 290 (505)
T PLN02274 235 GKLLVGAAIGTRES------------------------DKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPEL 290 (505)
T ss_pred CCEEEEEEEcCCcc------------------------HHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCC
Confidence 36788888998543 3579999999999999998743 34444567788875 4678
Q ss_pred cEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 194 KAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 194 pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
++++ |.. .+.+++...+ ..|+|+|-+
T Consensus 291 ~vi~-------g~v---~t~e~a~~a~----~aGaD~i~v 316 (505)
T PLN02274 291 DVIG-------GNV---VTMYQAQNLI----QAGVDGLRV 316 (505)
T ss_pred cEEE-------ecC---CCHHHHHHHH----HcCcCEEEE
Confidence 8775 111 3456665443 478888855
No 41
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=90.24 E-value=9.2 Score=37.68 Aligned_cols=89 Identities=22% Similarity=0.317 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCcEEEEEcc----CCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCce
Q psy15811 154 HRPNVEALVRAGVDYLALETI----PAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ 229 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~----~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~ 229 (581)
+.+|++.+.++|+|++++-.- ++.+++...++.+++.+++|+++.. .+.+++. .+. ..|++
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v-----------~t~ee~~-~a~---~~G~d 141 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC-----------STLEEGL-AAQ---KLGFD 141 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC-----------CCHHHHH-HHH---HcCCC
Confidence 346788889999998876432 1225667778888763377776522 2455553 333 47889
Q ss_pred EEEeCCC---C-----hhhHHHHHHHHHhhCCCCceE
Q psy15811 230 AIGVNCV---R-----PSHVSTLVRCIKQSHPTVQTI 258 (581)
Q Consensus 230 ~vGvNC~---~-----p~~~~~~l~~l~~~~~~~p~~ 258 (581)
.+++|-. + .......++.+++. .++|++
T Consensus 142 ~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~-~~iPvi 177 (221)
T PRK01130 142 FIGTTLSGYTEETKKPEEPDFALLKELLKA-VGCPVI 177 (221)
T ss_pred EEEcCCceeecCCCCCCCcCHHHHHHHHHh-CCCCEE
Confidence 9988632 1 11224566777664 445544
No 42
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=90.24 E-value=6.1 Score=40.85 Aligned_cols=122 Identities=13% Similarity=0.142 Sum_probs=80.8
Q ss_pred HHHHHHHHHHCCCcEEEEEc-----------------cCCHHHHHHHHHHHHhc-CCCcEEEEEEEcCCCcCCCCCCHHH
Q psy15811 154 HRPNVEALVRAGVDYLALET-----------------IPAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISS 215 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET-----------------~~~~~E~~aa~~a~~~~-~~~pv~isft~~~~g~l~~G~~~~~ 215 (581)
.++.++.|.++||..|.+|- +-+.+|...-++++++. .+.+++|--..+ -+. .+..+++
T Consensus 94 v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTD--a~~-~~~~~~e 170 (285)
T TIGR02320 94 FRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVE--SLI-LGKGMED 170 (285)
T ss_pred HHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecc--ccc-ccCCHHH
Confidence 35567888889999999975 34678888888888754 233333322222 111 2345889
Q ss_pred HHHHHHhhCCCCceEEEeCC-C-ChhhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcc
Q psy15811 216 AVTSCLLANPDQIQAIGVNC-V-RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKD 283 (581)
Q Consensus 216 ~~~~~~~~~~~~~~~vGvNC-~-~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~ 283 (581)
+++++......|+|+|-+=+ . .++++.++.+.+...++++|+++.|...+.+ -..+|.+. |+.
T Consensus 171 Ai~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~----~~~eL~~l-G~~ 235 (285)
T TIGR02320 171 ALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTT----PTDEFRDA-GIS 235 (285)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCC----CHHHHHHc-CCC
Confidence 99887666679999999987 2 6888888888887544578888766432221 13566665 654
No 43
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=89.83 E-value=14 Score=38.35 Aligned_cols=187 Identities=17% Similarity=0.143 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCceEEec--cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15811 349 WHRPNVEALVRAGVDYLALIKPSISSQTAAS--IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLA 426 (581)
Q Consensus 349 l~~~av~lA~~A~~~~~~~~~~~~~v~Vags--iGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~ 426 (581)
+..++++..++..- ..+|... +-||...=+.|---. .+.++.++..+...+++-.+.++|+|++.
T Consensus 93 ~v~~air~iK~~~p----------dl~vi~Dvclc~YT~hGHcGil~~---~g~vdND~Tl~~L~k~Avs~A~AGADiVA 159 (320)
T cd04824 93 PVIQAIKLIREEFP----------ELLIACDVCLCEYTSHGHCGILYE---DGTINNEASVKRLAEVALAYAKAGAHIVA 159 (320)
T ss_pred hHHHHHHHHHHhCC----------CcEEEEeeeccCCCCCCcceeECC---CCcCcCHHHHHHHHHHHHHHHHhCCCEEe
Confidence 55666666555421 2455544 456654322221000 12367788889999999999999999998
Q ss_pred ecccCCHHHHHHHHHHHHh--c-CCCeEEEEEEEc--------------------CC-CcCCCCCcHHHHHHHHHhhCCC
Q psy15811 427 LETIPAEKEALALVKLLRE--F-PGQKAWLSFSCK--------------------DD-THTSHGELISSAVTSCLLANPD 482 (581)
Q Consensus 427 ~ET~p~~~Ea~a~~~~~~~--~-~~~pv~iSft~~--------------------~~-~~l~~G~~~~~~~~~l~~~~~~ 482 (581)
=-.|-+- ...++.+++.+ + .++|++ |.+.+ |+ ..-++-..-.++++.+.....-
T Consensus 160 PSdMMDG-rV~aIR~aLD~~G~~~~v~Im-SYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~E 237 (320)
T cd04824 160 PSDMMDG-RVRAIKQALIQAGLGNKVSVM-SYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSE 237 (320)
T ss_pred ccccccc-HHHHHHHHHHHCCCccCCeee-ehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHh
Confidence 5554442 23455666664 3 355644 66543 00 1122222334555554222234
Q ss_pred CceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCC---CcccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 483 QIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGG---VWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 483 ~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
+++.+.|-=..| .+.+++.++...+++|+.+|--+|+ .......+|.+. ..-+.|....+..+|+.+|
T Consensus 238 GAD~lMVKPal~--YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iDe--~~~~~Esl~~ikRAGAd~I 308 (320)
T cd04824 238 GADMIMVKPGTP--YLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFDL--KRAVLEAMTGFRRAGADII 308 (320)
T ss_pred CCCEEEEcCCch--HHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhcCCCEE
Confidence 667777765222 4566777777665799999999995 122223567654 3357778888889999876
No 44
>PRK06852 aldolase; Validated
Probab=89.78 E-value=4.7 Score=41.98 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=58.4
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHH-hcCCCeEEEEEEEcCCCc--------CCCCCcHHHHHHHHHhhCCC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLR-EFPGQKAWLSFSCKDDTH--------TSHGELISSAVTSCLLANPD 482 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~-~~~~~pv~iSft~~~~~~--------l~~G~~~~~~~~~l~~~~~~ 482 (581)
..++.+.++|+|.|+.- +.+++... .+.++|.++.++-..+-. ..--.++++|++.= ...+.
T Consensus 63 ~~i~~~~~~g~dav~~~--------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG-~~~~~ 133 (304)
T PRK06852 63 HLFRIASKAKIGVFATQ--------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFK-ENSGL 133 (304)
T ss_pred HHHHHHHhcCCCEEEeC--------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcC-CccCC
Confidence 35566677899999854 44444433 346799999986421111 01223466665521 01135
Q ss_pred CceEEEECC-CCCccchHHHHHHHhh-----CCCCeEE--EeeCCCCC
Q psy15811 483 QIQAIGVNC-VRPSHVSTLVRCIKQS-----HPTVQTI--VYPNKGGV 522 (581)
Q Consensus 483 ~~~~iGiNC-~~p~~~~~~l~~l~~~-----~~~~pl~--~ypNag~~ 522 (581)
++++|++.. .+.+.-.+.|+.+... ....|++ +||-.+..
T Consensus 134 ~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i 181 (304)
T PRK06852 134 NILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV 181 (304)
T ss_pred CceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCccc
Confidence 689999999 5655444555554332 2358876 58876544
No 45
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.70 E-value=5.9 Score=39.07 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=53.1
Q ss_pred CCCCEEEecccCCH--HHHHHH-HHHHHh-cCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCC--
Q psy15811 420 AGVDYLALETIPAE--KEALAL-VKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR-- 493 (581)
Q Consensus 420 ~gvD~i~~ET~p~~--~Ea~a~-~~~~~~-~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~-- 493 (581)
.|+|++.=|.+... ...... ...... ..+.|+++++... +-+.+.++++.+ ...+.++|-|||..
T Consensus 22 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~------~~~~~~~aa~~~---~~aG~d~ieln~g~p~ 92 (231)
T cd02801 22 YGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGS------DPETLAEAAKIV---EELGADGIDLNMGCPS 92 (231)
T ss_pred HCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCC------CHHHHHHHHHHH---HhcCCCEEEEeCCCCH
Confidence 46999887765541 111111 111111 2468999999532 123444555544 45688999999944
Q ss_pred ---------------CccchHHHHHHHhhCCCCeEEEeeCCC
Q psy15811 494 ---------------PSHVSTLVRCIKQSHPTVQTIVYPNKG 520 (581)
Q Consensus 494 ---------------p~~~~~~l~~l~~~~~~~pl~~ypNag 520 (581)
|..+..+++.++... +.|+.+.-+.|
T Consensus 93 ~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~ 133 (231)
T cd02801 93 PKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLG 133 (231)
T ss_pred HHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeec
Confidence 344566777777654 47888877654
No 46
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=89.63 E-value=14 Score=38.54 Aligned_cols=185 Identities=15% Similarity=0.073 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCceEEec--cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15811 349 WHRPNVEALVRAGVDYLALIKPSISSQTAAS--IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLA 426 (581)
Q Consensus 349 l~~~av~lA~~A~~~~~~~~~~~~~v~Vags--iGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~ 426 (581)
+..++++..++..- ..+|... +-||...=+.|--. .+.++.++..+...+++-.+.++|+|+|.
T Consensus 100 ~v~~air~iK~~~p----------dl~vi~DVcLc~YT~hGHcGil~----~g~i~ND~Tl~~L~~~Als~A~AGADiVA 165 (322)
T PRK13384 100 LLARMVRTIKAAVP----------EMMVIPDICFCEYTDHGHCGVLH----NDEVDNDATVENLVKQSVTAAKAGADMLA 165 (322)
T ss_pred hHHHHHHHHHHHCC----------CeEEEeeeecccCCCCCceeecc----CCcCccHHHHHHHHHHHHHHHHcCCCeEe
Confidence 55667766655421 2455544 45665432322111 12467888889999999999999999998
Q ss_pred ecccCCHHHHHHHHHHHHh--cCCCeEEEEEEEcC----------------CC----cCCCCCcHHHHHHHHHhhCCCCc
Q psy15811 427 LETIPAEKEALALVKLLRE--FPGQKAWLSFSCKD----------------DT----HTSHGELISSAVTSCLLANPDQI 484 (581)
Q Consensus 427 ~ET~p~~~Ea~a~~~~~~~--~~~~pv~iSft~~~----------------~~----~l~~G~~~~~~~~~l~~~~~~~~ 484 (581)
=-+|-+- ...++.+++.+ +.+++++ |.+.+= .| .-++--.-.++++.+.....-++
T Consensus 166 PSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGA 243 (322)
T PRK13384 166 PSAMMDG-QVKAIRQGLDAAGFEHVAIL-AHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGA 243 (322)
T ss_pred ccccccc-HHHHHHHHHHHCCCCCCcee-ehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCC
Confidence 5555442 23455566654 3455543 665430 01 11222223345554422223466
Q ss_pred eEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCC---CcccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 485 QAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGG---VWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 485 ~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
+.+.|-=..| .+.+++.++... +.|+.+|--+|+ .......+|.+. ...+.|....+..+|+.+|
T Consensus 244 D~lMVKPal~--YLDIi~~~k~~~-~lPvaaYqVSGEYaMikaAa~~G~~d~--~~~~~Esl~~~kRAGAd~I 311 (322)
T PRK13384 244 DILMVKPGTP--YLDVLSRLRQET-HLPLAAYQVGGEYAMIKFAALAGALDE--RAVVTETLGGLKRAGADLI 311 (322)
T ss_pred CEEEEcCCch--HHHHHHHHHhcc-CCCEEEEEchHHHHHHHHHHHcCCccH--HHHHHHHHHHHHHcCCCEE
Confidence 7777765222 445667777765 799999999995 122222567654 3457788888899999876
No 47
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.52 E-value=5.1 Score=41.73 Aligned_cols=105 Identities=20% Similarity=0.129 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCcEEEE-----E-ccCCHHHHHHHHHHHHhcC--CCcEEEEEEEcCCCcCCCCCCHHH
Q psy15811 144 SMTEADLIAWHRPNVEALVRAGVDYLAL-----E-TIPAEKEALALVKLLREFP--GQKAWLSFSCKDDTHTSHGELISS 215 (581)
Q Consensus 144 ~~~~~~~~~~~~~q~~~l~~~gvD~l~~-----E-T~~~~~E~~aa~~a~~~~~--~~pv~isft~~~~g~l~~G~~~~~ 215 (581)
.++++ .+++.++.+++.|||.|++ | ..-+.+|=+.+++.+++.. .+||++.. .+.+.++
T Consensus 21 ~vD~~----a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---------g~~~t~e 87 (299)
T COG0329 21 SVDEE----ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---------GSNSTAE 87 (299)
T ss_pred CcCHH----HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---------CCCcHHH
Confidence 46664 5677888999999998765 3 2236777777777777543 48888744 2334566
Q ss_pred HHHHHHhhCCCCceEEEeCCC-----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 216 AVTSCLLANPDQIQAIGVNCV-----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 216 ~~~~~~~~~~~~~~~vGvNC~-----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
+++.+..+...|++++.+=.- ..+.+.+..+.+... .++|+++|=+
T Consensus 88 ai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a-~~lPvilYN~ 138 (299)
T COG0329 88 AIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEA-VDLPVILYNI 138 (299)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHh-cCCCEEEEeC
Confidence 666655555789998888662 346778888888886 7999999943
No 48
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=89.48 E-value=9.9 Score=39.57 Aligned_cols=117 Identities=18% Similarity=0.118 Sum_probs=77.5
Q ss_pred EEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEE-c-----cCCHHHHHHHHHHHHhc--
Q psy15811 119 ETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE-T-----IPAEKEALALVKLLREF-- 190 (581)
Q Consensus 119 ~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E-T-----~~~~~E~~aa~~a~~~~-- 190 (581)
++...+-|+.+ .+.++++. ++.+++.+++.|||.|++= | .-+.+|=+.+++.+.+.
T Consensus 11 v~~a~vTPf~~------------dg~iD~~~----l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~ 74 (303)
T PRK03620 11 LLSFPVTPFDA------------DGSFDEAA----YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA 74 (303)
T ss_pred eEEeeeCCCCC------------CCCcCHHH----HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC
Confidence 45556777654 23577655 5677888888999998652 2 22667777777766542
Q ss_pred CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC-----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 191 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 191 ~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~-----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
..+||++... + +..++++.+..+...|++++.+--- .++.+....+.+... +++||++|-+
T Consensus 75 ~~~pvi~gv~---------~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~-~~lpi~lYn~ 140 (303)
T PRK03620 75 GRVPVIAGAG---------G-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKS-TDLGVIVYNR 140 (303)
T ss_pred CCCcEEEecC---------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEEcC
Confidence 3589987541 1 4566666555555788888877542 245677777777775 7899999953
No 49
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.35 E-value=3.4 Score=43.69 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC-h-----------hhHHHH
Q psy15811 177 EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR-P-----------SHVSTL 244 (581)
Q Consensus 177 ~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~-p-----------~~~~~~ 244 (581)
.++....++.+++..+.|+++|+...+. +.+.+++..+. ..++++|-+|+++ | +.+.++
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~------~e~~~~a~~~~---~agad~ielN~scpp~~~~~~g~~~~~~~~ei 156 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSA------GGWVDYARQIE---QAGADALELNIYYLPTDPDISGAEVEQRYLDI 156 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCH------HHHHHHHHHHH---HcCCCEEEEeCCCCCCCCCCccccHHHHHHHH
Confidence 4555555555544347899998844211 12334444443 4578999998643 1 235677
Q ss_pred HHHHHhhCCCCceEEec
Q psy15811 245 VRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 245 l~~l~~~~~~~p~~~~p 261 (581)
++.+++. .++|++++.
T Consensus 157 l~~v~~~-~~iPV~vKl 172 (334)
T PRK07565 157 LRAVKSA-VSIPVAVKL 172 (334)
T ss_pred HHHHHhc-cCCcEEEEe
Confidence 7888775 678998884
No 50
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=89.26 E-value=13 Score=38.85 Aligned_cols=187 Identities=16% Similarity=0.180 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCceEEec--cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15811 349 WHRPNVEALVRAGVDYLALIKPSISSQTAAS--IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLA 426 (581)
Q Consensus 349 l~~~av~lA~~A~~~~~~~~~~~~~v~Vags--iGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~ 426 (581)
+..++++..++..- ...|... +-||-..=+.|-- -+-.+.++.++..+...+++-.+.++|+|+|.
T Consensus 98 ~v~~air~iK~~~p----------dl~vi~Dvclc~YT~hGHcGil--~~~~g~idND~Tl~~Lak~Al~~A~AGADiVA 165 (324)
T PF00490_consen 98 LVQRAIRAIKKAFP----------DLLVITDVCLCEYTSHGHCGIL--DDEDGEIDNDETLERLAKQALSHAEAGADIVA 165 (324)
T ss_dssp HHHHHHHHHHHHST----------TSEEEEEE-STTTBTSSSSSEB---CTTSSBEHHHHHHHHHHHHHHHHHHT-SEEE
T ss_pred hHHHHHHHHHHhCC----------CcEEEEecccccccCCCceEEE--ECCCCeEecHHHHHHHHHHHHHHHHhCCCeec
Confidence 55677766665531 2455544 5577554333210 00123578899999999999999999999998
Q ss_pred ecccCCHHHHHHHHHHHHh--cCCCeEEEEEEEcC---------------------CCcCCCCCcHHHHHHHHHhhCCCC
Q psy15811 427 LETIPAEKEALALVKLLRE--FPGQKAWLSFSCKD---------------------DTHTSHGELISSAVTSCLLANPDQ 483 (581)
Q Consensus 427 ~ET~p~~~Ea~a~~~~~~~--~~~~pv~iSft~~~---------------------~~~l~~G~~~~~~~~~l~~~~~~~ 483 (581)
=-.|-+- ...++.+++.+ +.++|+ +|.+.+- ...-++--...++++.+.....-+
T Consensus 166 PSdMMDG-rV~aIR~aLd~~g~~~v~I-mSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EG 243 (324)
T PF00490_consen 166 PSDMMDG-RVGAIREALDEAGFSDVPI-MSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEG 243 (324)
T ss_dssp E-S--TT-HHHHHHHHHHHTTCTTSEE-EEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT
T ss_pred cccccCC-HHHHHHHHHHhCCCCCccE-EechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhC
Confidence 6555542 23455566664 345664 4888761 011222223445555443222346
Q ss_pred ceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCC---CcccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 484 IQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGG---VWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 484 ~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
++.+.|-=..| .+.+++.++... ++|+.+|--+|+ .......+|.+. ..-+.|....+..+|+.+|
T Consensus 244 AD~lMVKPal~--YLDIi~~~k~~~-~~P~~aYqVSGEYaMikaAa~~G~~d~--~~~~~Esl~~~kRAGAd~I 312 (324)
T PF00490_consen 244 ADILMVKPALP--YLDIIRRVKERF-DLPVAAYQVSGEYAMIKAAAQNGWIDE--KRVVLESLLSIKRAGADII 312 (324)
T ss_dssp -SEEEEESSGG--GHHHHHHHHHHC-TS-EEEEETHHHHHHHHHHHHTTSS-H--HHHHHHHHHHHHHHT-SEE
T ss_pred CCEEEeecchh--HHHHHHHHHHhc-CCCEEEEEehHHHHHHHHHHHCCCcch--hhHHHHHHHHHHHcCCCEE
Confidence 67777765222 456777888777 799999999985 111222567553 3357777788888898876
No 51
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=89.24 E-value=3.5 Score=42.46 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=77.5
Q ss_pred EEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEc------cCCHHHHHHHHHHHHhc--
Q psy15811 119 ETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALET------IPAEKEALALVKLLREF-- 190 (581)
Q Consensus 119 ~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET------~~~~~E~~aa~~a~~~~-- 190 (581)
++..-+-|+.+ .+.+++ +.+++.++.+++.|||.|++=- .-+.+|-+..++.+.+.
T Consensus 5 i~~~~~TPf~~------------dg~id~----~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~ 68 (289)
T PF00701_consen 5 IFPALITPFNA------------DGSIDE----DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA 68 (289)
T ss_dssp EEEEE---BET------------TSSB-H----HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT
T ss_pred eeeeeeCCCCC------------CcCcCH----HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc
Confidence 45556677765 134665 4567788889999999998742 12577777777777642
Q ss_pred CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC-----CChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 191 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC-----VRPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 191 ~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC-----~~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
.++||++.... .+..++++.+..+...|++++.+-- ...+.+.+..+.+... +++|+++|-+
T Consensus 69 ~~~~vi~gv~~---------~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~-~~~pi~iYn~ 135 (289)
T PF00701_consen 69 GRVPVIAGVGA---------NSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADA-TDLPIIIYNN 135 (289)
T ss_dssp TSSEEEEEEES---------SSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHH-SSSEEEEEEB
T ss_pred CceEEEecCcc---------hhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhh-cCCCEEEEEC
Confidence 36899986533 3466777666555578888887653 1456777888888875 8999999955
No 52
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.17 E-value=4.5 Score=43.87 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=55.4
Q ss_pred CeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEc-cCCHHHHHHHHHHHHh-cCCCc
Q psy15811 117 HIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALET-IPAEKEALALVKLLRE-FPGQK 194 (581)
Q Consensus 117 ~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET-~~~~~E~~aa~~a~~~-~~~~p 194 (581)
+.+|++++|+... ..++++.|+++|||+|.+-+ -.+...+...++.+|+ +|+++
T Consensus 141 ~l~v~aavg~~~~------------------------~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~ 196 (404)
T PRK06843 141 KLRVGAAVSIDID------------------------TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLD 196 (404)
T ss_pred CeEEEEEEeCCHH------------------------HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCc
Confidence 6789999987432 35688999999999999874 4445667777888885 46788
Q ss_pred EEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 195 AWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 195 v~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
+++-. -.+.+++...+ ..|+|+|.+
T Consensus 197 vi~g~----------V~T~e~a~~l~----~aGaD~I~v 221 (404)
T PRK06843 197 LIAGN----------IVTKEAALDLI----SVGADCLKV 221 (404)
T ss_pred EEEEe----------cCCHHHHHHHH----HcCCCEEEE
Confidence 77622 34455555443 367888765
No 53
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=89.13 E-value=4.3 Score=41.57 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhCCCCEEEec-ccC-----CHHHHHHHHHHHHhcC--CCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhh
Q psy15811 408 AWHRPNVEALVRAGVDYLALE-TIP-----AEKEALALVKLLREFP--GQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 479 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~E-T~p-----~~~Ea~a~~~~~~~~~--~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~ 479 (581)
+.++..++.+.+.|||.|++= |.. +.+|-+.+++.+.+.. .+|++++.. +.+..++++..+..
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~~i~~a~~a 88 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------ANSTREAIELARHA 88 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC---------CccHHHHHHHHHHH
Confidence 345567777778899998754 322 2678788888777532 589998873 34556677766555
Q ss_pred CCCCceEEEECC-C----CCccchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 480 NPDQIQAIGVNC-V----RPSHVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 480 ~~~~~~~iGiNC-~----~p~~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
...+++++.+-- . +++.+....+.+.... ++|+++|-+-
T Consensus 89 ~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~-~~pi~iYn~P 132 (281)
T cd00408 89 EEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS-DLPVILYNIP 132 (281)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEECc
Confidence 567888777755 1 2234455566666665 6999999664
No 54
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=89.11 E-value=5.6 Score=41.84 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=51.2
Q ss_pred hCCCCEEEecccCCHHHHH---HHHHHHH-hcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-CC
Q psy15811 419 RAGVDYLALETIPAEKEAL---ALVKLLR-EFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC-VR 493 (581)
Q Consensus 419 ~~gvD~i~~ET~p~~~Ea~---a~~~~~~-~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC-~~ 493 (581)
+.|+|+..-|.++...... .....+. .....|+.+++ -|.++++.++........++++|-+|| |.
T Consensus 31 ~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl---------~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP 101 (321)
T PRK10415 31 EMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI---------AGSDPKEMADAARINVESGAQIIDINMGCP 101 (321)
T ss_pred HHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE---------eCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4688998888877632211 1111111 11124555555 355555544443222345788999999 43
Q ss_pred ----------------CccchHHHHHHHhhCCCCeEEEeeCCC
Q psy15811 494 ----------------PSHVSTLVRCIKQSHPTVQTIVYPNKG 520 (581)
Q Consensus 494 ----------------p~~~~~~l~~l~~~~~~~pl~~ypNag 520 (581)
|+.+..+++.++... ++|+.+.-..|
T Consensus 102 ~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G 143 (321)
T PRK10415 102 AKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTG 143 (321)
T ss_pred HHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEcc
Confidence 334555666666655 57888877755
No 55
>PRK15452 putative protease; Provisional
Probab=89.04 E-value=19 Score=39.66 Aligned_cols=132 Identities=12% Similarity=0.097 Sum_probs=80.3
Q ss_pred HHHHHHHhCCCCEEEec----------ccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCC
Q psy15811 412 PNVEALVRAGVDYLALE----------TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANP 481 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~E----------T~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~ 481 (581)
+++++.+++|+|.|.+. ...+..|.+.+++.+++ .++.+++.+. .+.....+..+...+.....
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~-~g~kvyvt~n-----~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHA-LGKKFYVVVN-----IAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHH-cCCEEEEEec-----CcCCHHHHHHHHHHHHHHHh
Confidence 78888899999999992 23456888889998887 5899998873 23333445555555543356
Q ss_pred CCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCc
Q psy15811 482 DQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVT 561 (581)
Q Consensus 482 ~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~ 561 (581)
.++++|-|... .++..++...++.|+.+-.... ++ + ...++-|.+.|+.-+==-..-+
T Consensus 88 ~gvDgvIV~d~------G~l~~~ke~~p~l~ih~stqln-i~--N-------------~~a~~f~~~lG~~rvvLSrELs 145 (443)
T PRK15452 88 MKPDALIMSDP------GLIMMVREHFPEMPIHLSVQAN-AV--N-------------WATVKFWQQMGLTRVILSRELS 145 (443)
T ss_pred CCCCEEEEcCH------HHHHHHHHhCCCCeEEEEeccc-CC--C-------------HHHHHHHHHCCCcEEEECCcCC
Confidence 68898888772 2333344433345655443331 11 1 1223456677764443345667
Q ss_pred hHHHHHHHHH
Q psy15811 562 SYEIQQMRIM 571 (581)
Q Consensus 562 P~hI~al~~~ 571 (581)
-++|+.|++.
T Consensus 146 l~EI~~i~~~ 155 (443)
T PRK15452 146 LEEIEEIRQQ 155 (443)
T ss_pred HHHHHHHHhh
Confidence 7777777643
No 56
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=89.03 E-value=6.5 Score=41.11 Aligned_cols=105 Identities=14% Similarity=0.076 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCcEEEE-----E-ccCCHHHHHHHHHHHHhc-C-CCcEEEEEEEcCCCcCCCCCCHHH
Q psy15811 144 SMTEADLIAWHRPNVEALVRAGVDYLAL-----E-TIPAEKEALALVKLLREF-P-GQKAWLSFSCKDDTHTSHGELISS 215 (581)
Q Consensus 144 ~~~~~~~~~~~~~q~~~l~~~gvD~l~~-----E-T~~~~~E~~aa~~a~~~~-~-~~pv~isft~~~~g~l~~G~~~~~ 215 (581)
.++++ .++++++.+++.|||.|++ | ..-+.+|-+.+++++.+. . ++||++... ..+..+
T Consensus 25 ~iD~~----~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---------~~~t~~ 91 (309)
T cd00952 25 TVDLD----ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---------TLNTRD 91 (309)
T ss_pred CcCHH----HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---------cCCHHH
Confidence 46654 4577888999999999875 3 233778888888777643 2 489887542 234566
Q ss_pred HHHHHHhhCCCCceEEEeCCC-----ChhhHHHHHHHHHhhCC-CCceEEecC
Q psy15811 216 AVTSCLLANPDQIQAIGVNCV-----RPSHVSTLVRCIKQSHP-TVQTIVYPN 262 (581)
Q Consensus 216 ~~~~~~~~~~~~~~~vGvNC~-----~p~~~~~~l~~l~~~~~-~~p~~~~pn 262 (581)
+++.+..+...|++++.+-=- ..+.+.+..+.+... + ++|+++|-+
T Consensus 92 ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a-~~~lPv~iYn~ 143 (309)
T cd00952 92 TIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEA-VPEMAIAIYAN 143 (309)
T ss_pred HHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHh-CCCCcEEEEcC
Confidence 666655555788998887641 346677777777765 6 699999944
No 57
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=88.93 E-value=20 Score=37.10 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=49.1
Q ss_pred CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCC-ceEEEECCCCC-------------ccchHHHHHHHhhCCCCe
Q psy15811 447 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQ-IQAIGVNCVRP-------------SHVSTLVRCIKQSHPTVQ 512 (581)
Q Consensus 447 ~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~-~~~iGiNC~~p-------------~~~~~~l~~l~~~~~~~p 512 (581)
.+.|+++|+.. .+.++.++........+ +++|=+||..| +.+.++++.+++.. ++|
T Consensus 90 ~~~p~i~si~g---------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~p 159 (301)
T PRK07259 90 FDTPIIANVAG---------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVP 159 (301)
T ss_pred cCCcEEEEecc---------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCC
Confidence 37899999953 33444444433334555 89999998433 22455667777765 689
Q ss_pred EEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcE
Q psy15811 513 TIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNI 553 (581)
Q Consensus 513 l~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~i 553 (581)
+++.-+.. .+++.+.++...+.|+..
T Consensus 160 v~vKl~~~---------------~~~~~~~a~~l~~~G~d~ 185 (301)
T PRK07259 160 VIVKLTPN---------------VTDIVEIAKAAEEAGADG 185 (301)
T ss_pred EEEEcCCC---------------chhHHHHHHHHHHcCCCE
Confidence 88876521 123455555566667643
No 58
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=88.81 E-value=7.8 Score=39.61 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCC------CcCCCCCc---HHHHHHHHHhhCC
Q psy15811 411 RPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDD------THTSHGEL---ISSAVTSCLLANP 481 (581)
Q Consensus 411 ~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~------~~l~~G~~---~~~~~~~l~~~~~ 481 (581)
+..++.+.++|++.+-+|.- .|....++++.+ .++||+-|+=+.+. +....|.+ ..++++..+....
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~e 172 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG---EEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEE 172 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHH
Confidence 34455556689999999995 355566666666 69999866644332 22223433 5567776666667
Q ss_pred CCceEEEECCCCCccchHHHHHHHhhCCCCeEEEe
Q psy15811 482 DQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVY 516 (581)
Q Consensus 482 ~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~y 516 (581)
.++++|=+-|.. . .+.+.+.... ++|++-.
T Consensus 173 AGA~~i~lE~v~-~---~~~~~i~~~l-~iP~igi 202 (264)
T PRK00311 173 AGAFALVLECVP-A---ELAKEITEAL-SIPTIGI 202 (264)
T ss_pred CCCCEEEEcCCC-H---HHHHHHHHhC-CCCEEEe
Confidence 899999999973 3 2445555544 5787653
No 59
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=88.75 E-value=5.8 Score=41.15 Aligned_cols=116 Identities=18% Similarity=0.149 Sum_probs=77.1
Q ss_pred EEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEE-c-----cCCHHHHHHHHHHHHhc--
Q psy15811 119 ETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE-T-----IPAEKEALALVKLLREF-- 190 (581)
Q Consensus 119 ~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E-T-----~~~~~E~~aa~~a~~~~-- 190 (581)
++...+-|+.. .+.++.+. ++.+++.+++.|||.|++= | .-+.+|=+.+++.+.+.
T Consensus 9 i~~a~vTPf~~------------dg~iD~~~----l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~ 72 (296)
T TIGR03249 9 LLSFPVTPFDA------------DGSFDEAA----YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK 72 (296)
T ss_pred eEEeeeCCcCC------------CCCcCHHH----HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC
Confidence 45556667654 13566654 6778888899999998763 2 33677888888766543
Q ss_pred CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC-----ChhhHHHHHHHHHhhCCCCceEEec
Q psy15811 191 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-----RPSHVSTLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 191 ~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~-----~p~~~~~~l~~l~~~~~~~p~~~~p 261 (581)
..+||++... .+..++++.+..+...|++++.+--- ..+.+....+.+... .++|+++|=
T Consensus 73 g~~pvi~gv~----------~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a-~~~pvilYn 137 (296)
T TIGR03249 73 GKVPVYTGVG----------GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCES-TDLGVIVYQ 137 (296)
T ss_pred CCCcEEEecC----------ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhc-cCCCEEEEe
Confidence 2588887541 23566766655555788998888652 235566666666664 779999993
No 60
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.55 E-value=12 Score=38.68 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhCCCCEEEec------------ccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHH
Q psy15811 408 AWHRPNVEALVRAGVDYLALE------------TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTS 475 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~E------------T~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~ 475 (581)
+.|...++.+.++|+|.|-+- -..+...+..+++++++..++|+++-++.. -+.+.+.++.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~-------~~~~~~~a~~ 174 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN-------VTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC-------chhHHHHHHH
Confidence 456677888888899998552 224456677888899876689999887521 1235555565
Q ss_pred HHhhCCCCceEEE-ECCCC-----Cc--------------------cchHHHHHHHhhCCCCeEEEeeCCCCCccccccc
Q psy15811 476 CLLANPDQIQAIG-VNCVR-----PS--------------------HVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMK 529 (581)
Q Consensus 476 l~~~~~~~~~~iG-iNC~~-----p~--------------------~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~ 529 (581)
+ ...++++|- +|++. +. .....++.+++.. ++|++. |.| ..
T Consensus 175 ~---~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~-~ipii~--~GG-I~------ 241 (296)
T cd04740 175 A---EEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-EIPIIG--VGG-IA------ 241 (296)
T ss_pred H---HHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-CCCEEE--ECC-CC------
Confidence 5 233555543 45421 10 0124455555543 456543 222 11
Q ss_pred ccCCcCHHHHHHHHHHHHHcCCcEEeecCC--CchHHHHHHHHHHhc
Q psy15811 530 WLDTEDEYSILHYVPQWLEEGVNIIGGCCE--VTSYEIQQMRIMIDE 574 (581)
Q Consensus 530 ~~~~~~~~~~~~~~~~w~~~G~~iiGGCCG--t~P~hI~al~~~l~~ 574 (581)
++ +-+.++++.|+..|+-|=+ .+|..++.+.+-+..
T Consensus 242 -----~~----~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~ 279 (296)
T cd04740 242 -----SG----EDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEA 279 (296)
T ss_pred -----CH----HHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHH
Confidence 11 2345666788887775544 378888888776654
No 61
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=88.32 E-value=14 Score=36.01 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCCEEEe-----cccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCC-------------CcCCCCCc---
Q psy15811 410 HRPNVEALVRAGVDYLAL-----ETIPAEKEALALVKLLREFPGQKAWLSFSCKDD-------------THTSHGEL--- 468 (581)
Q Consensus 410 ~~~~~~~l~~~gvD~i~~-----ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~-------------~~l~~G~~--- 468 (581)
+.+.++.+.++|+|.|=+ ...|+.......++.+++....|+-+++.+.+. +-+.++..
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~~~~ 97 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVEASEH 97 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEeeccchh
Confidence 557888999999999988 555543323344555554333555566665541 11122222
Q ss_pred HHHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeC-CCCCcccccccccCCcCHHHHHHHHHHHH
Q psy15811 469 ISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPN-KGGVWDSVHMKWLDTEDEYSILHYVPQWL 547 (581)
Q Consensus 469 ~~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypN-ag~~~~~~~~~~~~~~~~~~~~~~~~~w~ 547 (581)
..++++.+ ...+ ..+|+-| +|......++.+.... + .+.+.+- .| .+.+.|.. .........++|.
T Consensus 98 ~~~~~~~~---~~~~-~~~g~~~-~~~t~~e~~~~~~~~~-d-~i~~~~~~~g----~tg~~~~~--~~~~~i~~~~~~~ 164 (220)
T PRK05581 98 IHRLLQLI---KSAG-IKAGLVL-NPATPLEPLEDVLDLL-D-LVLLMSVNPG----FGGQKFIP--EVLEKIRELRKLI 164 (220)
T ss_pred HHHHHHHH---HHcC-CEEEEEE-CCCCCHHHHHHHHhhC-C-EEEEEEECCC----CCcccccH--HHHHHHHHHHHHH
Confidence 23344444 2223 2356666 3333344455554332 2 3333331 11 01111211 1112333445666
Q ss_pred Hc---CCcE-EeecCCCchHHHHHHHH
Q psy15811 548 EE---GVNI-IGGCCEVTSYEIQQMRI 570 (581)
Q Consensus 548 ~~---G~~i-iGGCCGt~P~hI~al~~ 570 (581)
.. +..+ ++| |.+|++++.+.+
T Consensus 165 ~~~~~~~~i~v~G--GI~~~nv~~l~~ 189 (220)
T PRK05581 165 DERGLDILIEVDG--GINADNIKECAE 189 (220)
T ss_pred HhcCCCceEEEEC--CCCHHHHHHHHH
Confidence 53 2333 766 899999988875
No 62
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.32 E-value=2.8 Score=43.10 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=41.2
Q ss_pred CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCCh------------hhHHHHHHHHHhhCCCCceE
Q psy15811 191 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRP------------SHVSTLVRCIKQSHPTVQTI 258 (581)
Q Consensus 191 ~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p------------~~~~~~l~~l~~~~~~~p~~ 258 (581)
.+.|+++|+...+ -+.+.++++.+. ..++++|-+||++| +.+.++++.+++. .+.|++
T Consensus 97 ~~~pvi~si~g~~------~~~~~~~a~~~~---~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~ 166 (289)
T cd02810 97 PGQPLIASVGGSS------KEDYVELARKIE---RAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLL 166 (289)
T ss_pred CCCeEEEEeccCC------HHHHHHHHHHHH---HhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEE
Confidence 4789999884431 123344444443 45899999999755 3566778888875 577888
Q ss_pred EecC
Q psy15811 259 VYPN 262 (581)
Q Consensus 259 ~~pn 262 (581)
+..+
T Consensus 167 vKl~ 170 (289)
T cd02810 167 VKLS 170 (289)
T ss_pred EEeC
Confidence 7744
No 63
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.28 E-value=33 Score=35.85 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=68.4
Q ss_pred CCCCCHH---HHHHHHHHHHHHHHHCCCcEEEEEcc-------------------------CCHHHHHHHHHHHHhcC--
Q psy15811 142 VDSMTEA---DLIAWHRPNVEALVRAGVDYLALETI-------------------------PAEKEALALVKLLREFP-- 191 (581)
Q Consensus 142 ~~~~~~~---~~~~~~~~q~~~l~~~gvD~l~~ET~-------------------------~~~~E~~aa~~a~~~~~-- 191 (581)
.+.+|.+ ++.+.|.+-++...++|.|.|=+=.- .....+..+++++++..
T Consensus 128 ~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~ 207 (327)
T cd02803 128 PREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGP 207 (327)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3567665 46677888888888899998844321 01233456677777543
Q ss_pred CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCCh--------------hhHHHHHHHHHhhCCCCce
Q psy15811 192 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRP--------------SHVSTLVRCIKQSHPTVQT 257 (581)
Q Consensus 192 ~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p--------------~~~~~~l~~l~~~~~~~p~ 257 (581)
+.|+.+-++..+ ....|.+.++++..+......+++.|-+..... ....+.++.+++. .++||
T Consensus 208 d~~i~vris~~~--~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPV 284 (327)
T cd02803 208 DFPVGVRLSADD--FVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA-VKIPV 284 (327)
T ss_pred CceEEEEechhc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH-CCCCE
Confidence 678877766532 233566777765544433357788887765421 1223566666664 45555
Q ss_pred EE
Q psy15811 258 IV 259 (581)
Q Consensus 258 ~~ 259 (581)
+.
T Consensus 285 i~ 286 (327)
T cd02803 285 IA 286 (327)
T ss_pred EE
Confidence 43
No 64
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.08 E-value=5.5 Score=41.18 Aligned_cols=61 Identities=21% Similarity=0.209 Sum_probs=38.1
Q ss_pred CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCCh-------------hhHHHHHHHHHhhCCCCce
Q psy15811 191 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRP-------------SHVSTLVRCIKQSHPTVQT 257 (581)
Q Consensus 191 ~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p-------------~~~~~~l~~l~~~~~~~p~ 257 (581)
.+.|+++|+...+ -+.+.+++..+. ..++++|=+|+++| +.+.++++.+++. .+.|+
T Consensus 88 ~~~p~ivsi~g~~------~~~~~~~a~~~~---~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv 157 (296)
T cd04740 88 FGTPVIASIAGST------VEEFVEVAEKLA---DAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPV 157 (296)
T ss_pred CCCcEEEEEecCC------HHHHHHHHHHHH---HcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCE
Confidence 4689999885321 122334444443 46789999998643 3455677777764 57788
Q ss_pred EEec
Q psy15811 258 IVYP 261 (581)
Q Consensus 258 ~~~p 261 (581)
+++.
T Consensus 158 ~vKl 161 (296)
T cd04740 158 IVKL 161 (296)
T ss_pred EEEe
Confidence 7764
No 65
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=88.07 E-value=4.9 Score=41.42 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhCCCCEEEecccC------CHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhh
Q psy15811 408 AWHRPNVEALVRAGVDYLALETIP------AEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 479 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~ET~p------~~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~ 479 (581)
+.+++.++.+.+.|||.|++=-.. +..|-+.+++.+.+. ...|+++... +.+..++++.++..
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~st~~~i~~a~~a 92 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG---------ANSTEEAIELARHA 92 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE---------SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc---------chhHHHHHHHHHHH
Confidence 456677888888999998874322 166777777776642 4589999884 34677777777655
Q ss_pred CCCCceEEEECC-----CCCccchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 480 NPDQIQAIGVNC-----VRPSHVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 480 ~~~~~~~iGiNC-----~~p~~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
...+++++-+-- .+.+.+....+.+.... +.|+++|-+-
T Consensus 93 ~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~-~~pi~iYn~P 136 (289)
T PF00701_consen 93 QDAGADAVLVIPPYYFKPSQEELIDYFRAIADAT-DLPIIIYNNP 136 (289)
T ss_dssp HHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHS-SSEEEEEEBH
T ss_pred hhcCceEEEEeccccccchhhHHHHHHHHHHhhc-CCCEEEEECC
Confidence 567788776643 13344566667777766 7999999884
No 66
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=87.91 E-value=29 Score=38.45 Aligned_cols=104 Identities=15% Similarity=0.252 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEEEE--EEEcCCCcCCCCCCHHHHHHHHHhhC
Q psy15811 148 ADLIAWHRPNVEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLS--FSCKDDTHTSHGELISSAVTSCLLAN 224 (581)
Q Consensus 148 ~~~~~~~~~q~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~is--ft~~~~g~l~~G~~~~~~~~~~~~~~ 224 (581)
+++...| ++...+.|+|+| +|--+.+.+.++.+++++|+. +.-+.++ ++.++...+ +.+.+.++.+.
T Consensus 104 ddvv~~f---v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~-G~~~~~~i~yt~sp~~t~---~y~~~~a~~l~--- 173 (468)
T PRK12581 104 DDIVDKF---ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKT-GKEAQLCIAYTTSPVHTL---NYYLSLVKELV--- 173 (468)
T ss_pred chHHHHH---HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHc-CCEEEEEEEEEeCCcCcH---HHHHHHHHHHH---
Confidence 4444444 556678999997 667788999999999999986 5554444 444331100 11333444443
Q ss_pred CCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 225 PDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 225 ~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
..|++.|.+-=+ .|..+.++++.+++. .++||.+.-.
T Consensus 174 ~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~H 214 (468)
T PRK12581 174 EMGADSICIKDMAGILTPKAAKELVSGIKAM-TNLPLIVHTH 214 (468)
T ss_pred HcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeC
Confidence 578888877654 499999999999884 6788776544
No 67
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=87.74 E-value=6.1 Score=40.87 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCC-CCEEEec-c-----cCCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhh
Q psy15811 409 WHRPNVEALVRAG-VDYLALE-T-----IPAEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 479 (581)
Q Consensus 409 ~~~~~~~~l~~~g-vD~i~~E-T-----~p~~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~ 479 (581)
.++.+++.+.+.| ||.|++= | .=+.+|-+.+++.+.+. ..+|++++.. +.+..++++..+..
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~~i~la~~a 92 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG---------SVNLKEAVELGKYA 92 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------CCCHHHHHHHHHHH
Confidence 4456677778889 9998654 2 22377878888766643 2478888873 34566777766555
Q ss_pred CCCCceEEEECC-----CCCccchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 480 NPDQIQAIGVNC-----VRPSHVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 480 ~~~~~~~iGiNC-----~~p~~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
...+++++.+-= .+.+.+....+.+....++.|+++|-|-
T Consensus 93 ~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 93 TELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred HHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 556777666621 1223455555666554436999999775
No 68
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=87.62 E-value=39 Score=35.27 Aligned_cols=226 Identities=14% Similarity=0.100 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEE
Q psy15811 42 EACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETA 121 (581)
Q Consensus 42 e~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~Va 121 (581)
+.+.+.-++-++.|-.-|.. |+....+ ...|-....-.-+..+|++..|+..- +.+|.
T Consensus 61 d~l~~~~~~~~~~Gi~~v~l--Fgv~~~K-d~~gs~A~~~~g~v~~air~iK~~~p-------------------dl~vi 118 (322)
T PRK13384 61 SALADEIERLYALGIRYVMP--FGISHHK-DAKGSDTWDDNGLLARMVRTIKAAVP-------------------EMMVI 118 (322)
T ss_pred HHHHHHHHHHHHcCCCEEEE--eCCCCCC-CCCcccccCCCChHHHHHHHHHHHCC-------------------CeEEE
Confidence 56667778889999875543 4432211 11222111223478888888777652 44555
Q ss_pred ee--cCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc--CCCcEEE
Q psy15811 122 AS--IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF--PGQKAWL 197 (581)
Q Consensus 122 gs--iGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~--~~~pv~i 197 (581)
.+ +-||...=+.|--. .+.++.|+-.+...+|+-.++++|+|++.==-|-|- .+.++.+++.+. .+.|++
T Consensus 119 ~DVcLc~YT~hGHcGil~----~g~i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im- 192 (322)
T PRK13384 119 PDICFCEYTDHGHCGVLH----NDEVDNDATVENLVKQSVTAAKAGADMLAPSAMMDG-QVKAIRQGLDAAGFEHVAIL- 192 (322)
T ss_pred eeeecccCCCCCceeecc----CCcCccHHHHHHHHHHHHHHHHcCCCeEeccccccc-HHHHHHHHHHHCCCCCCcee-
Confidence 44 56666554443211 135788999999999999999999999986666665 567777777753 345543
Q ss_pred EEEEc--------------------CCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCce
Q psy15811 198 SFSCK--------------------DDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQT 257 (581)
Q Consensus 198 sft~~--------------------~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~ 257 (581)
|-+.+ ...+-++-..-.+|+..+......|+|.+.|-=+.| -+.+++.++.. .++|+
T Consensus 193 SYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~-~~lPv 269 (322)
T PRK13384 193 AHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTP--YLDVLSRLRQE-THLPL 269 (322)
T ss_pred ehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCch--HHHHHHHHHhc-cCCCE
Confidence 43321 011223444556677665544568899999987655 36788888885 78999
Q ss_pred EEecCCC-ccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc
Q psy15811 258 IVYPNKG-VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA 317 (581)
Q Consensus 258 ~~~pnag-~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn 317 (581)
.+|=-+| .-++ +.. .. .+ | ++..+.+.+.+..|-+| +|.|.
T Consensus 270 aaYqVSGEYaMi--------kaA--a~--~G--~-----~d~~~~~~Esl~~~kRAGAd~IiTY 314 (322)
T PRK13384 270 AAYQVGGEYAMI--------KFA--AL--AG--A-----LDERAVVTETLGGLKRAGADLIVSY 314 (322)
T ss_pred EEEEchHHHHHH--------HHH--HH--cC--C-----ccHHHHHHHHHHHHHHcCCCEEeeh
Confidence 9996665 1111 010 00 11 2 56677888888999999 66665
No 69
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.59 E-value=7.4 Score=39.99 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=52.9
Q ss_pred CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCCCc------------cchHHHHHHHhhCCCCeEE
Q psy15811 447 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPS------------HVSTLVRCIKQSHPTVQTI 514 (581)
Q Consensus 447 ~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~------------~~~~~l~~l~~~~~~~pl~ 514 (581)
.+.|+++|+... +-+.+.++++.+ ...++++|-+||..|. .+.++++.++... ++|++
T Consensus 97 ~~~pvi~si~g~------~~~~~~~~a~~~---~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~ 166 (289)
T cd02810 97 PGQPLIASVGGS------SKEDYVELARKI---ERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLL 166 (289)
T ss_pred CCCeEEEEeccC------CHHHHHHHHHHH---HHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEE
Confidence 578999998542 112344445554 3447889999985443 3445677777665 68888
Q ss_pred EeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 515 VYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 515 ~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
+.-+.+. +.+++.+.++...+.|+..|
T Consensus 167 vKl~~~~-------------~~~~~~~~a~~l~~~Gad~i 193 (289)
T cd02810 167 VKLSPYF-------------DLEDIVELAKAAERAGADGL 193 (289)
T ss_pred EEeCCCC-------------CHHHHHHHHHHHHHcCCCEE
Confidence 8866431 13456666676777776554
No 70
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.53 E-value=6.5 Score=40.97 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec-ccC-----CHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHH
Q psy15811 400 SMTEADLIAWHRPNVEALVRAGVDYLALE-TIP-----AEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISS 471 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~gvD~i~~E-T~p-----~~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~ 471 (581)
.++.+. ++.+++.+.+.|||.|++- |.. +.+|-+.+++.+.+. ..+|++++.. + +..+
T Consensus 24 ~iD~~~----l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~-~t~~ 89 (303)
T PRK03620 24 SFDEAA----YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG---------G-GTAQ 89 (303)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------C-CHHH
Confidence 356554 5567778888999998653 322 266777777766542 3589998772 2 4566
Q ss_pred HHHHHHhhCCCCceEEEECC-C----CCccchHHHHHHHhhCCCCeEEEeeCCC
Q psy15811 472 AVTSCLLANPDQIQAIGVNC-V----RPSHVSTLVRCIKQSHPTVQTIVYPNKG 520 (581)
Q Consensus 472 ~~~~l~~~~~~~~~~iGiNC-~----~p~~~~~~l~~l~~~~~~~pl~~ypNag 520 (581)
+++.++.....+++++.+-- . +++.+....+.+.... +.|+++|-+.|
T Consensus 90 ~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~-~lpi~lYn~~g 142 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKST-DLGVIVYNRDN 142 (303)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEcCCC
Confidence 77766555566778766643 1 1123444556666666 69999998766
No 71
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=87.44 E-value=18 Score=38.16 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEecc-cC-----CHH--------HHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHH
Q psy15811 407 IAWHRPNVEALVRAGVDYLALET-IP-----AEK--------EALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSA 472 (581)
Q Consensus 407 ~~~~~~~~~~l~~~gvD~i~~ET-~p-----~~~--------Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~ 472 (581)
.+...+.++.+.++|+|+|.+-+ .. +.. -.+-+++.+++. +.+.++|+|= + . ...
T Consensus 179 ~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~-g~~~ilH~CG-~--------~-~~~ 247 (340)
T TIGR01463 179 LDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEI-GGITVLHICG-F--------T-QPI 247 (340)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhc-CCceEEEECC-C--------c-hhh
Confidence 35556777777889999864433 22 121 123444555543 5666778851 1 1 112
Q ss_pred HHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCc
Q psy15811 473 VTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVN 552 (581)
Q Consensus 473 ~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ 552 (581)
+..+. ..+++++.+-- .. . ++..+... +..+.+.-|--+. ......++++..+.+++.++.|.-
T Consensus 248 ~~~l~---~~g~d~ls~d~-~~-~----l~~~~~~~-g~~~~i~Gnidp~------~ll~~gt~eeI~~~v~~~l~~~~~ 311 (340)
T TIGR01463 248 LRDIA---NNGCFGFSVDM-KP-G----MDHAKRVI-GGQASLVGNLSPF------STLMNGTPEKVKKLAKEVLYNGGD 311 (340)
T ss_pred HHHHH---HhCCCEEeecC-CC-C----HHHHHHHc-CCceEEEecCChH------HHhcCCCHHHHHHHHHHHHHcCCe
Confidence 33342 22445433222 11 1 23333332 2234555555211 111234588899999999998877
Q ss_pred EEeecCC----CchHHHHHHHHHHhccc
Q psy15811 553 IIGGCCE----VTSYEIQQMRIMIDEFN 576 (581)
Q Consensus 553 iiGGCCG----t~P~hI~al~~~l~~~~ 576 (581)
|++--|| |.++.|+++.+.++.++
T Consensus 312 Il~~gcgi~~~tp~eni~a~v~a~~~~~ 339 (340)
T TIGR01463 312 IVMPGCDIDWMTPLENLKAMIEACKSIK 339 (340)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 8876676 46789999998887653
No 72
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=87.30 E-value=15 Score=38.00 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEE
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSC 201 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~ 201 (581)
--++++++.++|+|.+++|...+.+|++...+.+ ..|+++.++.
T Consensus 163 AI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i----~~Pl~~n~~~ 206 (285)
T TIGR02317 163 AIERAKAYVEAGADMIFPEALTSLEEFRQFAKAV----KVPLLANMTE 206 (285)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc----CCCEEEEecc
Confidence 4568999999999999999999999988666654 4788876643
No 73
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=87.27 E-value=8.5 Score=39.89 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=40.1
Q ss_pred CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCC-ceEEEeCCCC-------------hhhHHHHHHHHHhhCCCCce
Q psy15811 192 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQ-IQAIGVNCVR-------------PSHVSTLVRCIKQSHPTVQT 257 (581)
Q Consensus 192 ~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~-~~~vGvNC~~-------------p~~~~~~l~~l~~~~~~~p~ 257 (581)
+.|+++|+.. .++++....+......+ +++|=+||++ |+.+.++++.+++. .+.||
T Consensus 91 ~~p~i~si~g---------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~-~~~pv 160 (301)
T PRK07259 91 DTPIIANVAG---------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV-VKVPV 160 (301)
T ss_pred CCcEEEEecc---------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCE
Confidence 6899998843 33444444433333566 8999999853 34466777888775 57888
Q ss_pred EEecC
Q psy15811 258 IVYPN 262 (581)
Q Consensus 258 ~~~pn 262 (581)
+++.+
T Consensus 161 ~vKl~ 165 (301)
T PRK07259 161 IVKLT 165 (301)
T ss_pred EEEcC
Confidence 88754
No 74
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=87.19 E-value=8.3 Score=39.70 Aligned_cols=106 Identities=10% Similarity=0.102 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCcEEEEE------ccCCHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCcCCCCCCHH
Q psy15811 143 DSMTEADLIAWHRPNVEALVRAGVDYLALE------TIPAEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELIS 214 (581)
Q Consensus 143 ~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E------T~~~~~E~~aa~~a~~~~--~~~pv~isft~~~~g~l~~G~~~~ 214 (581)
+.++.+. +++.++.+++.|||.+++= ..-+.+|=+.+++.+.+. ..+||++..+ ..+.+
T Consensus 14 g~iD~~~----~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~s~~ 80 (285)
T TIGR00674 14 GSVDFAA----LEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG---------SNATE 80 (285)
T ss_pred CCcCHHH----HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC---------CccHH
Confidence 3566644 5677888889999998763 234677777777766543 2488887542 23466
Q ss_pred HHHHHHHhhCCCCceEEEeCC----C-ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 215 SAVTSCLLANPDQIQAIGVNC----V-RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 215 ~~~~~~~~~~~~~~~~vGvNC----~-~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
++++.+..+...|++++.+== . .++.+....+.+... .++|+++|-+
T Consensus 81 ~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~-~~~pi~lYn~ 132 (285)
T TIGR00674 81 EAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEE-VDLPIILYNV 132 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 777666555578888877753 1 356777777777765 7899999943
No 75
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=87.07 E-value=2.7 Score=43.72 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=40.7
Q ss_pred CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChh----------------hHHHHHHHHHhhCCC
Q psy15811 191 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPS----------------HVSTLVRCIKQSHPT 254 (581)
Q Consensus 191 ~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~----------------~~~~~l~~l~~~~~~ 254 (581)
++.|+++|+.... +-+.+.++++.+. ..++++|-+||++|. .+.++++.+++. .+
T Consensus 98 ~~~p~i~si~G~~-----~~~~~~~~a~~~~---~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~ 168 (299)
T cd02940 98 PDKILIASIMCEY-----NKEDWTELAKLVE---EAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VK 168 (299)
T ss_pred CCCeEEEEecCCC-----CHHHHHHHHHHHH---hcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cC
Confidence 3689999885430 0123344444443 457899999998653 466777777765 67
Q ss_pred CceEEecC
Q psy15811 255 VQTIVYPN 262 (581)
Q Consensus 255 ~p~~~~pn 262 (581)
+|++++..
T Consensus 169 ~Pv~vKl~ 176 (299)
T cd02940 169 IPVIAKLT 176 (299)
T ss_pred CCeEEECC
Confidence 88888843
No 76
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.02 E-value=39 Score=35.77 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=61.6
Q ss_pred HHHHHHCCCcEEEEEc-cCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC
Q psy15811 158 VEALVRAGVDYLALET-IPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV 236 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET-~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~ 236 (581)
++...+.|+|.+-+-| ....+.++..++.+|+. +..+.+++... +..+++..++.+......+++.|.+-=+
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~-G~~v~~~l~~s------~~~~~e~l~~~a~~~~~~Ga~~i~i~DT 165 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEADVSEQHIGMAREL-GMDTVGFLMMS------HMTPPEKLAEQAKLMESYGADCVYIVDS 165 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHc-CCeEEEEEEcc------cCCCHHHHHHHHHHHHhcCCCEEEEccC
Confidence 4566688999886554 44555666777777775 66666655432 2345555555444434577887766544
Q ss_pred ----ChhhHHHHHHHHHhhC-CCCceEEe
Q psy15811 237 ----RPSHVSTLVRCIKQSH-PTVQTIVY 260 (581)
Q Consensus 237 ----~p~~~~~~l~~l~~~~-~~~p~~~~ 260 (581)
.|+.+.+.++.+++.. +++||.+.
T Consensus 166 ~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 166 AGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 4999999999998752 23666654
No 77
>PRK15063 isocitrate lyase; Provisional
Probab=86.99 E-value=7.7 Score=42.15 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCcEEEEEc-cCCHHHHHHHHHHHHh
Q psy15811 154 HRPNVEALVRAGVDYLALET-IPAEKEALALVKLLRE 189 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET-~~~~~E~~aa~~a~~~ 189 (581)
--++..++.+ |+|+|++|| .++++|++...++++.
T Consensus 267 AI~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~ 302 (428)
T PRK15063 267 AIARGLAYAP-YADLIWCETSTPDLEEARRFAEAIHA 302 (428)
T ss_pred HHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcc
Confidence 3457778888 999999998 8999999999999864
No 78
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=86.98 E-value=14 Score=38.24 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=68.1
Q ss_pred HHHHHHHHhCCCCEEEecccC-----------------CHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHH
Q psy15811 411 RPNVEALVRAGVDYLALETIP-----------------AEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSA 472 (581)
Q Consensus 411 ~~~~~~l~~~gvD~i~~ET~p-----------------~~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~ 472 (581)
+..++.+.++||..|.+|+.. +..|...-++++++. .+.+++|-- +.+..+ .+..++++
T Consensus 95 ~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiA--RTDa~~-~~~~~~eA 171 (285)
T TIGR02320 95 RRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIA--RVESLI-LGKGMEDA 171 (285)
T ss_pred HHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEE--eccccc-ccCCHHHH
Confidence 456677778999999998842 467777777777642 233443332 223222 13358999
Q ss_pred HHHHHhhCCCCceEEEECC--CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 473 VTSCLLANPDQIQAIGVNC--VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 473 ~~~l~~~~~~~~~~iGiNC--~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
++..+.....++++|=+-+ .+++.+..+.+.+....++.|+++-|.
T Consensus 172 i~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~ 219 (285)
T TIGR02320 172 LKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPT 219 (285)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecC
Confidence 9998777778888877765 345667777777654333578876663
No 79
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=86.84 E-value=21 Score=36.35 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=81.5
Q ss_pred HHHHHHHHHhCCCCEEEecc----------------------cCCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCC
Q psy15811 410 HRPNVEALVRAGVDYLALET----------------------IPAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHG 466 (581)
Q Consensus 410 ~~~~~~~l~~~gvD~i~~ET----------------------~p~~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G 466 (581)
..+.++.|.++|||+|=+-- =-++......++.+++. .++|+. +|+..+. ....|
T Consensus 26 ~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Np-i~~~G 103 (256)
T TIGR00262 26 SLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNL-IFRKG 103 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccH-Hhhhh
Confidence 34678888899999984432 11134455556667654 688976 8877532 11222
Q ss_pred CcHHHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCC-------------CCcccccccccCC
Q psy15811 467 ELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKG-------------GVWDSVHMKWLDT 533 (581)
Q Consensus 467 ~~~~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag-------------~~~~~~~~~~~~~ 533 (581)
+++.++.+ ...+++++-+.=..++....+++.++..+-..-+++-|+.. ..|-.+..+..+.
T Consensus 104 --~e~f~~~~---~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~ 178 (256)
T TIGR00262 104 --VEEFYAKC---KEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGA 178 (256)
T ss_pred --HHHHHHHH---HHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence 34444444 23466666666656666667777777664222245666653 1121111111111
Q ss_pred c--CHHHHHHHHHHHHHc-C-CcEEeecCCCc-hHHHHHHHHH
Q psy15811 534 E--DEYSILHYVPQWLEE-G-VNIIGGCCEVT-SYEIQQMRIM 571 (581)
Q Consensus 534 ~--~~~~~~~~~~~w~~~-G-~~iiGGCCGt~-P~hI~al~~~ 571 (581)
. .+.+..+.+++..+. + .-++|| |.+ |+|++.+.+.
T Consensus 179 ~~~~~~~~~~~i~~lr~~~~~pi~vgf--GI~~~e~~~~~~~~ 219 (256)
T TIGR00262 179 RNRAASALNELVKRLKAYSAKPVLVGF--GISKPEQVKQAIDA 219 (256)
T ss_pred cccCChhHHHHHHHHHhhcCCCEEEeC--CCCCHHHHHHHHHc
Confidence 0 122333444433332 2 345676 664 9999988765
No 80
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.81 E-value=9.1 Score=40.02 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhCCCCEEEec-ccC-----CHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhh
Q psy15811 408 AWHRPNVEALVRAGVDYLALE-TIP-----AEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 479 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~E-T~p-----~~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~ 479 (581)
+.++.+++.+.+.|||.|++- |.. +..|-+.+++.+.+. ..+||+++.. ..+..++++..+..
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---------~~~t~~ai~~a~~A 99 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---------TLNTRDTIARTRAL 99 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---------cCCHHHHHHHHHHH
Confidence 345577888888999998752 322 267777777766643 2489998873 24566777766555
Q ss_pred CCCCceEEEECC---C--CCccchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 480 NPDQIQAIGVNC---V--RPSHVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 480 ~~~~~~~iGiNC---~--~p~~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
...+++++.+-= . +.+.+....+.+....++.|+++|-|-
T Consensus 100 ~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P 144 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANP 144 (309)
T ss_pred HHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 667888666553 1 123355556667666534999999664
No 81
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.68 E-value=33 Score=34.95 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=55.4
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCC-ceEEEeC
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQ-IQAIGVN 234 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~-~~~vGvN 234 (581)
+-++.+.++|||.+++--+| ++|+...++.+++. ++..+ .| +.+ ++..+-+..+.+. ..+ +-+++++
T Consensus 108 ~f~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~-gl~~I-~l-vap-------~t~~eri~~i~~~-s~gfIY~vs~~ 175 (258)
T PRK13111 108 RFAADAAEAGVDGLIIPDLP-PEEAEELRAAAKKH-GLDLI-FL-VAP-------TTTDERLKKIASH-ASGFVYYVSRA 175 (258)
T ss_pred HHHHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHc-CCcEE-EE-eCC-------CCCHHHHHHHHHh-CCCcEEEEeCC
Confidence 44667788999999997776 47999999999886 65544 22 221 1122223333332 233 3344555
Q ss_pred C-CC-----hhhHHHHHHHHHhhCCCCceEE
Q psy15811 235 C-VR-----PSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 235 C-~~-----p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
= || |..+.+.++.+++. .++|+++
T Consensus 176 GvTG~~~~~~~~~~~~i~~vk~~-~~~pv~v 205 (258)
T PRK13111 176 GVTGARSADAADLAELVARLKAH-TDLPVAV 205 (258)
T ss_pred CCCCcccCCCccHHHHHHHHHhc-CCCcEEE
Confidence 5 22 45677888888885 5666654
No 82
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=86.38 E-value=3.1 Score=42.19 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEEEccCCH
Q psy15811 146 TEADLIAWHRPNVEALVRAGVDYLALETIPAE 177 (581)
Q Consensus 146 ~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~ 177 (581)
+.+++.++-.+.++.|.++|+|.+++|.+.|.
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 89999999999999999999999999998654
No 83
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=86.32 E-value=10 Score=38.96 Aligned_cols=106 Identities=15% Similarity=0.087 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCcEEEEE-c-----cCCHHHHHHHHHHHHhc-C-CCcEEEEEEEcCCCcCCCCCCHH
Q psy15811 143 DSMTEADLIAWHRPNVEALVRAGVDYLALE-T-----IPAEKEALALVKLLREF-P-GQKAWLSFSCKDDTHTSHGELIS 214 (581)
Q Consensus 143 ~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E-T-----~~~~~E~~aa~~a~~~~-~-~~pv~isft~~~~g~l~~G~~~~ 214 (581)
+.++.+. ++..++.+++.|||.|++= | .-+.+|-+.+++.+.+. . .+|+++.. .+.+..
T Consensus 16 g~iD~~~----~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv---------~~~~~~ 82 (284)
T cd00950 16 GSVDFDA----LERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGT---------GSNNTA 82 (284)
T ss_pred CCcCHHH----HHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEecc---------CCccHH
Confidence 3566654 5667788889999998753 2 34788888888777654 2 47877643 234566
Q ss_pred HHHHHHHhhCCCCceEEEeCCC-----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 215 SAVTSCLLANPDQIQAIGVNCV-----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 215 ~~~~~~~~~~~~~~~~vGvNC~-----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
++++.+..+...|+++|.+==- .++.+....+.+... +++|+++|-+
T Consensus 83 ~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~-~~~pi~lYn~ 134 (284)
T cd00950 83 EAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA-TDLPVILYNV 134 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 7776665555788887776531 246677777777775 7899999944
No 84
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=86.28 E-value=15 Score=38.05 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=66.0
Q ss_pred HHHHHHHhCCCCEEEecccCCH-------------------------HHHHHHHHHHH---hcCCCeEEEEEEEcCCCcC
Q psy15811 412 PNVEALVRAGVDYLALETIPAE-------------------------KEALALVKLLR---EFPGQKAWLSFSCKDDTHT 463 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~-------------------------~Ea~a~~~~~~---~~~~~pv~iSft~~~~~~l 463 (581)
+.++.+.+.|+++++..|+... ......++-++ +..+.|+++|+...+
T Consensus 26 ~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~qi~g~~---- 101 (300)
T TIGR01037 26 ESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASVYGSS---- 101 (300)
T ss_pred HHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEEeecCC----
Confidence 4455566779999988654432 01222233322 223579999995211
Q ss_pred CCCCcHHHHHHHHHhhCCCCceEEEECCCCCc-------------cchHHHHHHHhhCCCCeEEEeeCCCCCcccccccc
Q psy15811 464 SHGELISSAVTSCLLANPDQIQAIGVNCVRPS-------------HVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKW 530 (581)
Q Consensus 464 ~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~-------------~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~ 530 (581)
-+.+.++++.+.+ ....+++|=+||..|. .+.++++.++... +.|+++.-+. +
T Consensus 102 --~~~~~~~a~~~~~-~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~------~---- 167 (300)
T TIGR01037 102 --VEEFAEVAEKLEK-APPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP------N---- 167 (300)
T ss_pred --HHHHHHHHHHHHh-ccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC------C----
Confidence 1234444554411 1134789999996443 3455667777655 5888887642 1
Q ss_pred cCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 531 LDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 531 ~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
.+++.+.++...+.|+..|
T Consensus 168 -----~~~~~~~a~~l~~~G~d~i 186 (300)
T TIGR01037 168 -----VTDITEIAKAAEEAGADGL 186 (300)
T ss_pred -----hhhHHHHHHHHHHcCCCEE
Confidence 1234555666667776554
No 85
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=86.21 E-value=21 Score=38.26 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-EecccCC------HHHHHHHHHHHH---hcCCCeEEEEEEEcCCCcCCCCCcHH
Q psy15811 401 MTEADLIAWHRPNVEALVRAGVDYL-ALETIPA------EKEALALVKLLR---EFPGQKAWLSFSCKDDTHTSHGELIS 470 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~gvD~i-~~ET~p~------~~Ea~a~~~~~~---~~~~~pv~iSft~~~~~~l~~G~~~~ 470 (581)
++.+++. +++..+..+|||+| ..|++.+ .+-.+++.++++ +.++...+..+.+ ++. ..
T Consensus 143 ld~~~la----~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~ni-------t~~-~~ 210 (367)
T cd08205 143 LSPEELA----ELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNI-------TGD-PD 210 (367)
T ss_pred CCHHHHH----HHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEc-------CCC-HH
Confidence 6666555 45556666899998 4455444 233334444444 2344443434433 233 25
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 471 SAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 471 ~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
++++..+.....+++++.++- |..-...++.+.... ++|+..+++.
T Consensus 211 e~i~~a~~a~~~Gad~vmv~~--~~~g~~~~~~l~~~~-~lpi~~H~a~ 256 (367)
T cd08205 211 ELRRRADRAVEAGANALLINP--NLVGLDALRALAEDP-DLPIMAHPAF 256 (367)
T ss_pred HHHHHHHHHHHcCCCEEEEec--ccccccHHHHHHhcC-CCeEEEccCc
Confidence 666655444456667666666 222233345555443 6788888776
No 86
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=86.07 E-value=18 Score=36.43 Aligned_cols=151 Identities=9% Similarity=0.003 Sum_probs=93.0
Q ss_pred HHHHHHHhCCCCEEEecc--------cCC-----HHHHHHHHHHHHhcC-CCeEEEEEEEcCCCcCCCCCcHHHHHHHHH
Q psy15811 412 PNVEALVRAGVDYLALET--------IPA-----EKEALALVKLLREFP-GQKAWLSFSCKDDTHTSHGELISSAVTSCL 477 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET--------~p~-----~~Ea~a~~~~~~~~~-~~pv~iSft~~~~~~l~~G~~~~~~~~~l~ 477 (581)
..++.+.++|+|.|+.-. .|+ +.|+...++.+.+-. .+|+++-+ +. ..|.+.+++++.+.
T Consensus 23 ~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~---~~---G~g~~~~~~~~~~~ 96 (240)
T cd06556 23 SMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADL---PF---GAYGAPTAAFELAK 96 (240)
T ss_pred HHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeC---CC---CCCcCHHHHHHHHH
Confidence 456677778999986532 233 788888888888644 35777555 22 34556677766554
Q ss_pred hhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCccccc---cc-ccCCcCHHHHHHHHHHHHHcCCcE
Q psy15811 478 LANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVH---MK-WLDTEDEYSILHYVPQWLEEGVNI 553 (581)
Q Consensus 478 ~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~---~~-~~~~~~~~~~~~~~~~w~~~G~~i 553 (581)
+....++. |||.=+-..+.+.++.++.. .+|++.+-.+-+...... +. +....+.++..+.++.+.++|+..
T Consensus 97 ~l~~aGa~--gv~iED~~~~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~ 172 (240)
T cd06556 97 TFMRAGAA--GVKIEGGEWHIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADL 172 (240)
T ss_pred HHHHcCCc--EEEEcCcHHHHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCE
Confidence 44456666 67773222344566777665 378887766532211110 11 112223456778889999999876
Q ss_pred EeecCCCchHHHHHHHHHHh
Q psy15811 554 IGGCCEVTSYEIQQMRIMID 573 (581)
Q Consensus 554 iGGCCGt~P~hI~al~~~l~ 573 (581)
|==-|- +++.++++.+.++
T Consensus 173 i~~e~~-~~e~~~~i~~~~~ 191 (240)
T cd06556 173 IVMECV-PVELAKQITEALA 191 (240)
T ss_pred EEEcCC-CHHHHHHHHHhCC
Confidence 654555 9999999998764
No 87
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=86.05 E-value=17 Score=37.03 Aligned_cols=181 Identities=13% Similarity=0.115 Sum_probs=101.5
Q ss_pred ceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----EecccCC--HHHHHHHHHHHHhc
Q psy15811 374 SQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYL-----ALETIPA--EKEALALVKLLREF 446 (581)
Q Consensus 374 v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i-----~~ET~p~--~~Ea~a~~~~~~~~ 446 (581)
.+++|-.+-. ..++ .|...-+.+.+.+|-...++.+.+ .|.++ +||..-. +.+.+..++.+++
T Consensus 15 ~lcvglDp~~-~~~~-------~~~~~~~~~~~~~f~~~ii~~l~~-~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~- 84 (261)
T TIGR02127 15 PLCVGLDPRL-ELLP-------EWGLPSSAAGLQAFCLRIIDATAE-YAAVVKPQVAFFERFGSEGFKALEEVIAHARS- 84 (261)
T ss_pred CEEEEECCCh-hhcc-------cccccchHHHHHHHHHHHHHhcCC-cceEEecCHHHHHhcCHHHHHHHHHHHHHHHH-
Confidence 5777766532 2222 122223456677888888877754 34443 4555532 4566666777777
Q ss_pred CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-CCCccchHHHHHHHhhCCCCeEE-EeeCCCCCcc
Q psy15811 447 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTI-VYPNKGGVWD 524 (581)
Q Consensus 447 ~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC-~~p~~~~~~l~~l~~~~~~~pl~-~ypNag~~~~ 524 (581)
.+.+|++-+-..| .|++....++.+ ....+++++-+|+ .+...+.++++.....+..+-+. ..-|.|.. +
T Consensus 85 ~g~~VilD~K~~D-----IpnTv~~~a~a~--~~~~g~D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~~~-~ 156 (261)
T TIGR02127 85 LGLPVLADVKRGD-----IGSTASAYAKAW--LGHLHADALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPGGA-D 156 (261)
T ss_pred CCCeEEEEeeccC-----hHHHHHHHHHHH--HhhcCCCEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCCHH-H
Confidence 4788887665433 366777777776 2245689999999 67777777776655433122222 23453321 0
Q ss_pred cccccccCCcC-HHHHHHHHHHHHHc--CCcEEeecCC-CchHHHHHHHHHH
Q psy15811 525 SVHMKWLDTED-EYSILHYVPQWLEE--GVNIIGGCCE-VTSYEIQQMRIMI 572 (581)
Q Consensus 525 ~~~~~~~~~~~-~~~~~~~~~~w~~~--G~~iiGGCCG-t~P~hI~al~~~l 572 (581)
..........+ .+...+.++.|.+. |.-..|-=|| |.|++++.||+.+
T Consensus 157 lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR~~~ 208 (261)
T TIGR02127 157 LQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVVGATSPGDLLRLRIEM 208 (261)
T ss_pred HhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEECCCCHHHHHHHHHhC
Confidence 01000000001 23566777777643 1123555554 5578999999876
No 88
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.04 E-value=36 Score=35.94 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=53.9
Q ss_pred CCCCCHHH---HHHHHHHHHHHHHHCCCcEEEEEc--------c--C---------------CHHHHHHHHHHHHhcC--
Q psy15811 142 VDSMTEAD---LIAWHRPNVEALVRAGVDYLALET--------I--P---------------AEKEALALVKLLREFP-- 191 (581)
Q Consensus 142 ~~~~~~~~---~~~~~~~q~~~l~~~gvD~l~~ET--------~--~---------------~~~E~~aa~~a~~~~~-- 191 (581)
.+.+|.++ +.+.|.+-++...++|.|.|=+=- | | ...-+..+++++|+..
T Consensus 136 p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~ 215 (338)
T cd04733 136 PRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGP 215 (338)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 35677655 566777777777789999984321 1 1 1333455677777543
Q ss_pred CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 192 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 192 ~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
+.|+.+-++..+ ....|-++++++..+......+++.|=|
T Consensus 216 d~~v~vris~~~--~~~~g~~~eea~~ia~~Le~~Gvd~iev 255 (338)
T cd04733 216 GFPVGIKLNSAD--FQRGGFTEEDALEVVEALEEAGVDLVEL 255 (338)
T ss_pred CCeEEEEEcHHH--cCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 577777766432 2345667777665543333566777654
No 89
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=85.79 E-value=62 Score=35.77 Aligned_cols=98 Identities=20% Similarity=0.205 Sum_probs=64.7
Q ss_pred HHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC
Q psy15811 158 VEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV 236 (581)
Q Consensus 158 ~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~ 236 (581)
++..++.|+|.| +|-.+++...++.+++.+|+. +..+-+++++....+ .+++-.+..+.++...|++.|.+-=+
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~-G~~v~~~i~~t~~p~----~~~~~~~~~a~~l~~~Gad~I~i~Dt 176 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKA-GGHAQVAISYTTSPV----HTIDYFVKLAKEMQEMGADSICIKDM 176 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHc-CCeEEEEEEeecCCC----CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 344568899987 555667888888899999886 666555555543222 33333333222223578888777553
Q ss_pred ----ChhhHHHHHHHHHhhCCCCceEEec
Q psy15811 237 ----RPSHVSTLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 237 ----~p~~~~~~l~~l~~~~~~~p~~~~p 261 (581)
.|..+..+++.+++. .++||.+.-
T Consensus 177 ~G~l~P~~v~~lv~alk~~-~~~pi~~H~ 204 (448)
T PRK12331 177 AGILTPYVAYELVKRIKEA-VTVPLEVHT 204 (448)
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 499999999999986 567877654
No 90
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=85.63 E-value=12 Score=38.69 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCcEEEEE-c-----cCCHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCcCCCCCCHH
Q psy15811 144 SMTEADLIAWHRPNVEALVRA-GVDYLALE-T-----IPAEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELIS 214 (581)
Q Consensus 144 ~~~~~~~~~~~~~q~~~l~~~-gvD~l~~E-T-----~~~~~E~~aa~~a~~~~--~~~pv~isft~~~~g~l~~G~~~~ 214 (581)
.++.+ .++..++.+++. |||.|++- | .-+.+|=+.+++.+.+. ..+|+++.. ...+..
T Consensus 17 ~iD~~----~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv---------~~~~~~ 83 (288)
T cd00954 17 EINED----VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHV---------GSLNLK 83 (288)
T ss_pred CCCHH----HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEecc---------CCCCHH
Confidence 46654 456777888888 99998653 2 22577777777766643 247888743 223466
Q ss_pred HHHHHHHhhCCCCceEEEeCCC-----ChhhHHHHHHHHHhhCC-CCceEEecC
Q psy15811 215 SAVTSCLLANPDQIQAIGVNCV-----RPSHVSTLVRCIKQSHP-TVQTIVYPN 262 (581)
Q Consensus 215 ~~~~~~~~~~~~~~~~vGvNC~-----~p~~~~~~l~~l~~~~~-~~p~~~~pn 262 (581)
++++.+..+...|++++.+--- ..+.+.+..+.+... . ++|+++|-+
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a-~~~lpi~iYn~ 136 (288)
T cd00954 84 ESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAA-AASLPMIIYHI 136 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCCEEEEeC
Confidence 6776655555789999887552 246677777777665 6 899999944
No 91
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=85.61 E-value=10 Score=39.24 Aligned_cols=106 Identities=18% Similarity=0.096 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec-ccC-----CHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHH
Q psy15811 400 SMTEADLIAWHRPNVEALVRAGVDYLALE-TIP-----AEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISS 471 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~gvD~i~~E-T~p-----~~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~ 471 (581)
.++.+. ++..++.+.+.|||.|++- |.. +.+|-+.+++.+.+. ..+||+++..+ +..+
T Consensus 17 ~iD~~~----l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~----------~t~~ 82 (289)
T cd00951 17 SFDEDA----YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY----------GTAT 82 (289)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC----------CHHH
Confidence 355554 5567777788999998654 322 266777777766543 35899988732 3455
Q ss_pred HHHHHHhhCCCCceEEEECC-C----CCccchHHHHHHHhhCCCCeEEEeeCCC
Q psy15811 472 AVTSCLLANPDQIQAIGVNC-V----RPSHVSTLVRCIKQSHPTVQTIVYPNKG 520 (581)
Q Consensus 472 ~~~~l~~~~~~~~~~iGiNC-~----~p~~~~~~l~~l~~~~~~~pl~~ypNag 520 (581)
+++..+.....+++++.+-- . +.+.+....+.+.... ++|+++|-+.|
T Consensus 83 ~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~-~~pi~lYn~~g 135 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST-DLGVIVYNRAN 135 (289)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCC
Confidence 55555444556778766643 1 1123444556666655 69999997666
No 92
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=85.51 E-value=5.7 Score=37.23 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHH-HH----HHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCC
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKE-AL----ALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPD 226 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E-~~----aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~ 226 (581)
+.+.++++.+.++|+|++.+++...-.. .. ..+..+++..+.|+++++.+.+.. ..+..++..+. ..
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~---~~ 83 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA-----AAVDIAAAAAR---AA 83 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch-----hhhhHHHHHHH---Hc
Confidence 5567788888899999999887552211 11 113333333478999988765422 21221122333 47
Q ss_pred CceEEEeCCCCh---hhHHHHHHHHHhhCCCCceEEecC
Q psy15811 227 QIQAIGVNCVRP---SHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 227 ~~~~vGvNC~~p---~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
++++|-+|+.++ +...+.++.+++...+.|+++..+
T Consensus 84 g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~ 122 (200)
T cd04722 84 GADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLS 122 (200)
T ss_pred CCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 889999999864 345677777776422566666643
No 93
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=85.51 E-value=18 Score=37.99 Aligned_cols=143 Identities=15% Similarity=0.217 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEecccCC-------------HHHHHHHHHHHHhcCCC-eEEEEEEEcCCCcCCCCCcH
Q psy15811 404 ADLIAWHRPNVEALVRAGVDYLALETIPA-------------EKEALALVKLLREFPGQ-KAWLSFSCKDDTHTSHGELI 469 (581)
Q Consensus 404 ~~~~~~~~~~~~~l~~~gvD~i~~ET~p~-------------~~Ea~a~~~~~~~~~~~-pv~iSft~~~~~~l~~G~~~ 469 (581)
+.+.++..+.++.+.++|+|+|.+-+ ++ ..=.+-+++.+++ .+. ++++|.+ |..
T Consensus 178 ~~~~~~~~~~~~~~~~~G~d~i~~~d-~~~~~isp~~f~e~~~P~~k~i~~~i~~-~g~~~~~lH~c---------G~~- 245 (343)
T PF01208_consen 178 DKITDFIIEYAKAQIEAGADGIFIFD-SSGSLISPEMFEEFILPYLKKIIDAIKE-AGKDPVILHIC---------GNT- 245 (343)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEE-TTGGGS-HHHHHHHTHHHHHHHHHHHHH-HETE-EEEEET---------THG-
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccc-cccCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCceEEEEC---------Cch-
Confidence 44455566677777889999986655 33 2224566667776 366 8887773 211
Q ss_pred HHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHc
Q psy15811 470 SSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEE 549 (581)
Q Consensus 470 ~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 549 (581)
...+..+ ...+++++.+. ....+..+.+ ..++++.+ .-|.-. ..... .++++..+.+++.++.
T Consensus 246 ~~~~~~l---~~~g~d~~~~~--~~~~~~~~~~---~~~~~~~l--~Gni~~------~~~l~-gt~eei~~~v~~~i~~ 308 (343)
T PF01208_consen 246 TPILDDL---ADLGADVLSVD--EKVDLAEAKR---KLGDKIVL--MGNIDP------VSLLF-GTPEEIEEEVKRLIEE 308 (343)
T ss_dssp -GGHHHH---HTSS-SEEEE---TTS-HHHHHH---HHTTSSEE--EEEB-G-------GGGG-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHH---HhcCCCEEEEc--CCCCHHHHHH---HhCCCeEE--ECCCCc------ccccc-CCHHHHHHHHHHHHHH
Confidence 1123444 23356654442 2223333433 33323444 333211 01222 4588999999999884
Q ss_pred CCc-----EEeecC----CCchHHHHHHHHHHhcc
Q psy15811 550 GVN-----IIGGCC----EVTSYEIQQMRIMIDEF 575 (581)
Q Consensus 550 G~~-----iiGGCC----Gt~P~hI~al~~~l~~~ 575 (581)
+.. |+|--| +|.|+.|+++-++++++
T Consensus 309 ~~~~~~gfIl~~gc~ip~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 309 GLAGGGGFILSPGCGIPPDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp THCTSSSEEBEBSS---TTS-HHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEeCCCcCCCCcCHHHHHHHHHHHHhC
Confidence 333 788777 57789999999888753
No 94
>PRK00865 glutamate racemase; Provisional
Probab=85.44 E-value=18 Score=36.83 Aligned_cols=138 Identities=20% Similarity=0.147 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhh
Q psy15811 400 SMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 479 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~ 479 (581)
.-+.+++.++-.+.++.|.+.|+|+|++-.+..- ..+++.+|+..++|++ ++ +.++......
T Consensus 46 ~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~---~~~l~~lr~~~~iPvi-gi--------------~~a~~~a~~~ 107 (261)
T PRK00865 46 EKSEEEIRERTLEIVEFLLEYGVKMLVIACNTAS---AVALPDLRERYDIPVV-GI--------------VPAIKPAAAL 107 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH---HHHHHHHHHhCCCCEE-ee--------------HHHHHHHHHh
Confidence 4789999999999999999999999998876532 1255667765688977 22 2333333111
Q ss_pred CCCCceEEEECCCCCccchHHHHH-HHhhCCCCeEEEeeCCCCCcccccccccCC-cCHHHHHHHHHHHHHcCC-cEEee
Q psy15811 480 NPDQIQAIGVNCVRPSHVSTLVRC-IKQSHPTVQTIVYPNKGGVWDSVHMKWLDT-EDEYSILHYVPQWLEEGV-NIIGG 556 (581)
Q Consensus 480 ~~~~~~~iGiNC~~p~~~~~~l~~-l~~~~~~~pl~~ypNag~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~G~-~iiGG 556 (581)
... .-|||=.+....-....+. ++..+....+...|....+.... .++... .....+.++++.+.+.|+ .||=|
T Consensus 108 ~~~--~~igVLaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~ie-~g~~~~~~~~~~l~~~l~~l~~~g~d~iILG 184 (261)
T PRK00865 108 TRN--GRIGVLATPGTVKSAAYRDLIARFAPDCQVESLACPELVPLVE-AGILGGPVTLEVLREYLAPLLAAGIDTLVLG 184 (261)
T ss_pred cCC--CeEEEEECHHHhhchHHHHHHHHhCCCCEEEEecCHHHHHHHh-CCCcCCHHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 111 2455655443322223332 33333234555566654321111 111111 112345666677766775 45566
Q ss_pred cC
Q psy15811 557 CC 558 (581)
Q Consensus 557 CC 558 (581)
|-
T Consensus 185 CT 186 (261)
T PRK00865 185 CT 186 (261)
T ss_pred Cc
Confidence 64
No 95
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=85.42 E-value=55 Score=34.83 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=67.8
Q ss_pred CCCCHHH---HHHHHHHHHHHHHHCCCcEEEEEc-------------cC------------CHHHHHHHHHHHHhcC--C
Q psy15811 143 DSMTEAD---LIAWHRPNVEALVRAGVDYLALET-------------IP------------AEKEALALVKLLREFP--G 192 (581)
Q Consensus 143 ~~~~~~~---~~~~~~~q~~~l~~~gvD~l~~ET-------------~~------------~~~E~~aa~~a~~~~~--~ 192 (581)
..+|.+| +.+.|.+-++...++|.|.|=+=- .+ ...-+..+++++|+.. +
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d 204 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGED 204 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCC
Confidence 4576654 567788888888889999985532 11 1566677788888653 3
Q ss_pred CcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC-C--hh----------hHHHHHHHHHhhCCCCceEE
Q psy15811 193 QKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-R--PS----------HVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 193 ~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~-~--p~----------~~~~~l~~l~~~~~~~p~~~ 259 (581)
.++.+-++..+ ....|.++++++..+......++|.+-|-.. + +. ......+.+++. .++||++
T Consensus 205 ~~v~iRi~~~D--~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~ 281 (353)
T cd02930 205 FIIIYRLSMLD--LVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRA-VDIPVIA 281 (353)
T ss_pred ceEEEEecccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHh-CCCCEEE
Confidence 45555554332 2345677877765544333567887776432 1 11 124455666664 5566554
No 96
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=85.33 E-value=4 Score=42.76 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=53.1
Q ss_pred HCCCcEEEEEccCCHHHHHH---HHHHHHhc-CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCCh
Q psy15811 163 RAGVDYLALETIPAEKEALA---LVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRP 238 (581)
Q Consensus 163 ~~gvD~l~~ET~~~~~E~~a---a~~a~~~~-~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p 238 (581)
+.|+|++.-|.+..-.=... ..+.++.. .+.|+++|+.. .++++.+.++......|.++|-+||++|
T Consensus 29 ~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g---------~~~~~~~~aa~~~~~~G~d~IelN~gcP 99 (319)
T TIGR00737 29 EYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFG---------SDPDTMAEAAKINEELGADIIDINMGCP 99 (319)
T ss_pred HHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeC---------CCHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 55899999998865422111 11222211 26899998843 3344444333322357899999999876
Q ss_pred h-----------------hHHHHHHHHHhhCCCCceEEecC
Q psy15811 239 S-----------------HVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 239 ~-----------------~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
. .+.++++.++.. .+.|++++-.
T Consensus 100 ~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-~~~pv~vKir 139 (319)
T TIGR00737 100 VPKITKKGAGSALLRDPDLIGKIVKAVVDA-VDIPVTVKIR 139 (319)
T ss_pred HHHhcCCCccchHhCCHHHHHHHHHHHHhh-cCCCEEEEEE
Confidence 4 223556666654 5678887744
No 97
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=85.09 E-value=18 Score=37.56 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=38.2
Q ss_pred CCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCCCc----------------cchHHHHHHHhhCCCC
Q psy15811 448 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPS----------------HVSTLVRCIKQSHPTV 511 (581)
Q Consensus 448 ~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~----------------~~~~~l~~l~~~~~~~ 511 (581)
+.|+++|+.... +-+.+.++++.+ ...++++|-+||..|. .+.++++.++... ++
T Consensus 99 ~~p~i~si~G~~-----~~~~~~~~a~~~---~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~ 169 (299)
T cd02940 99 DKILIASIMCEY-----NKEDWTELAKLV---EEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KI 169 (299)
T ss_pred CCeEEEEecCCC-----CHHHHHHHHHHH---HhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CC
Confidence 689999986531 113455555555 3346789999995443 2445566666655 58
Q ss_pred eEEEee
Q psy15811 512 QTIVYP 517 (581)
Q Consensus 512 pl~~yp 517 (581)
|+.+.-
T Consensus 170 Pv~vKl 175 (299)
T cd02940 170 PVIAKL 175 (299)
T ss_pred CeEEEC
Confidence 888874
No 98
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=84.98 E-value=16 Score=37.91 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=36.4
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEE
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFS 200 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft 200 (581)
--+|++.+.++|+|.+++|...+.+|++...+.+ +.|+++.++
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~----~~Pl~~n~~ 210 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMTELEMYRRFADAV----KVPILANIT 210 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc----CCCEEEEec
Confidence 4567999999999999999999999998877765 478887665
No 99
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=84.95 E-value=28 Score=35.54 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=55.7
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
..+-++.+.++|||.+++=-.|- +|....+..+++. ++..+.-++-. ++ .+-+..+.+....=+=.|..
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~-ee~~~~~~~~~~~-gi~~I~lv~Pt--------T~-~eri~~i~~~a~gFIY~vS~ 176 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPY-EESDYLISVCNLY-NIELILLIAPT--------SS-KSRIQKIARAAPGCIYLVST 176 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCH-HHHHHHHHHHHHc-CCCEEEEECCC--------CC-HHHHHHHHHhCCCcEEEEcC
Confidence 34456777889999999988885 7888888999886 65544322211 12 23333433312212223343
Q ss_pred CCC-C-----hhhHHHHHHHHHhhCCCCceEE
Q psy15811 234 NCV-R-----PSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 234 NC~-~-----p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
+=. | ++.+.+.++.+++. ++.|+.+
T Consensus 177 ~GvTG~~~~~~~~~~~~i~~ir~~-t~~Pi~v 207 (263)
T CHL00200 177 TGVTGLKTELDKKLKKLIETIKKM-TNKPIIL 207 (263)
T ss_pred CCCCCCCccccHHHHHHHHHHHHh-cCCCEEE
Confidence 332 2 46677888888874 6666543
No 100
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=84.88 E-value=51 Score=34.05 Aligned_cols=204 Identities=13% Similarity=0.092 Sum_probs=108.7
Q ss_pred HHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC
Q psy15811 158 VEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR 237 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~ 237 (581)
++...+.|--+-.|-+ .+++-++++++++.+. +.||+++++-..-.+. +
T Consensus 8 l~~A~~~~yAV~AfN~-~n~e~~~avi~AAee~-~sPvIlq~s~~~~~~~-----------------------------~ 56 (282)
T TIGR01858 8 LQDAQAGGYAVPAFNI-HNLETIQAVVETAAEM-RSPVILAGTPGTFKHA-----------------------------G 56 (282)
T ss_pred HHHHHHcCCeEEEEEe-CCHHHHHHHHHHHHHh-CCCEEEEeCccHHhhC-----------------------------C
Confidence 3444455655555554 5888999999999986 8899998744211000 1
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHHHHhhc
Q psy15811 238 PSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETA 317 (581)
Q Consensus 238 p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~aiI~Tn 317 (581)
.+.+.+.++.+.+. .++|+.+...-| .+.|.|.+. +++
T Consensus 57 ~~~~~~~~~~~a~~-~~VPValHLDHg--------------------------------~~~e~i~~a----i~~----- 94 (282)
T TIGR01858 57 TEYIVALCSAASTT-YNMPLALHLDHH--------------------------------ESLDDIRQK----VHA----- 94 (282)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEECCCC--------------------------------CCHHHHHHH----HHc-----
Confidence 23344566666664 678887763322 133333221 221
Q ss_pred CCcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCC-CC
Q psy15811 318 ASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYS-GH 396 (581)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~-g~ 396 (581)
+|.+...|+|. ++-++..++.+..|++|+.. .+.|=|-+|-.|. -.++.+.. ..
T Consensus 95 ----GFtSVM~DgS~--------lp~eeNi~~T~~vv~~Ah~~------------gv~VEaElG~vgg-~e~~~~~~~~~ 149 (282)
T TIGR01858 95 ----GVRSAMIDGSH--------FPFAQNVKLVKEVVDFCHRQ------------DCSVEAELGRLGG-VEDDLSVDEED 149 (282)
T ss_pred ----CCCEEeecCCC--------CCHHHHHHHHHHHHHHHHHc------------CCeEEEEEEecCC-ccCCCccccch
Confidence 23333445553 33455556667777777664 2567666666642 11211000 01
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec--ccCC------HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCc
Q psy15811 397 YVDSMTEADLIAWHRPNVEALVRAGVDYLALE--TIPA------EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGEL 468 (581)
Q Consensus 397 y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~E--T~p~------~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~ 468 (581)
..-+++++..+|.+ +.|||.|.+- |..- ..+. -.++.+++..++|..+|= .+|.+
T Consensus 150 -~~~T~peea~~Fv~-------~TgvD~LAvaiGt~HG~yk~~p~Ldf-~~L~~I~~~~~iPLVlHG--------gSG~~ 212 (282)
T TIGR01858 150 -ALYTDPQEAKEFVE-------ATGVDSLAVAIGTAHGLYKKTPKLDF-DRLAEIREVVDVPLVLHG--------ASDVP 212 (282)
T ss_pred -hccCCHHHHHHHHH-------HHCcCEEecccCccccCcCCCCccCH-HHHHHHHHHhCCCeEEec--------CCCCC
Confidence 00245666666654 4699998654 3221 1111 233344444578887665 36777
Q ss_pred HHHHHHHH
Q psy15811 469 ISSAVTSC 476 (581)
Q Consensus 469 ~~~~~~~l 476 (581)
-++..+.+
T Consensus 213 ~e~~~~ai 220 (282)
T TIGR01858 213 DEDVRRTI 220 (282)
T ss_pred HHHHHHHH
Confidence 66655554
No 101
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=84.85 E-value=52 Score=34.06 Aligned_cols=217 Identities=14% Similarity=0.101 Sum_probs=116.3
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV 236 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~ 236 (581)
.++...+.+--+..|- +.+++-++++++++++. +.|++++++-.. +.. .
T Consensus 9 il~~A~~~~yaV~AfN-~~n~e~~~avi~AAee~-~sPvIiq~~~~~-------------~~~------~---------- 57 (284)
T PRK09195 9 MLNNAQRGGYAVPAFN-IHNLETMQVVVETAAEL-HSPVIIAGTPGT-------------FSY------A---------- 57 (284)
T ss_pred HHHHHHHcCceEEEEE-eCCHHHHHHHHHHHHHh-CCCEEEEcChhH-------------Hhh------C----------
Confidence 3444445565444444 45888999999999986 899999874321 000 0
Q ss_pred ChhhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHHHHhh
Q psy15811 237 RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIET 316 (581)
Q Consensus 237 ~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~aiI~T 316 (581)
+.+.+.+.++.+.+. .++|+.+...-| .+.|.+.+. +++
T Consensus 58 g~~~~~~~~~~~A~~-~~VPV~lHLDHg--------------------------------~~~e~i~~A----i~~---- 96 (284)
T PRK09195 58 GTEYLLAIVSAAAKQ-YHHPLALHLDHH--------------------------------EKFDDIAQK----VRS---- 96 (284)
T ss_pred CHHHHHHHHHHHHHH-CCCCEEEECCCC--------------------------------CCHHHHHHH----HHc----
Confidence 123345666666664 678887763222 133444322 222
Q ss_pred cCCcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCC
Q psy15811 317 AASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGH 396 (581)
Q Consensus 317 na~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~ 396 (581)
+|.+...|+|. ++-++..++.+..|++|+.. .+.|=|-+|-.|.. .++.+....
T Consensus 97 -----GftSVM~DgS~--------l~~eeNi~~T~~vv~~Ah~~------------gv~VEaElG~vgg~-e~~~~~~~~ 150 (284)
T PRK09195 97 -----GVRSVMIDGSH--------LPFAQNISLVKEVVDFCHRF------------DVSVEAELGRLGGQ-EDDLQVDEA 150 (284)
T ss_pred -----CCCEEEeCCCC--------CCHHHHHHHHHHHHHHHHHc------------CCEEEEEEecccCc-ccCcccccc
Confidence 23333445553 34555556777777777753 25665556655421 122111111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec--ccCCH------HHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCc
Q psy15811 397 YVDSMTEADLIAWHRPNVEALVRAGVDYLALE--TIPAE------KEALALVKLLREFPGQKAWLSFSCKDDTHTSHGEL 468 (581)
Q Consensus 397 y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~E--T~p~~------~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~ 468 (581)
-...+++++..+|.+ +.|||.|.+- |..-. .+. ..++.+++..++|..+|= .+|.+
T Consensus 151 ~~~~T~peea~~Fv~-------~TgvD~LAvaiGt~HG~y~~~p~Ld~-~~L~~I~~~~~vPLVLHG--------gSG~~ 214 (284)
T PRK09195 151 DALYTDPAQAREFVE-------ATGIDSLAVAIGTAHGMYKGEPKLDF-DRLENIRQWVNIPLVLHG--------ASGLP 214 (284)
T ss_pred cccCCCHHHHHHHHH-------HHCcCEEeeccCccccccCCCCcCCH-HHHHHHHHHhCCCeEEec--------CCCCC
Confidence 001246777666665 4699998654 32211 111 233444444578887665 35777
Q ss_pred HHHHHHHHHhhCCCCceEEEECC
Q psy15811 469 ISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 469 ~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
-++..+.+ ..++.=|.|+.
T Consensus 215 ~e~~~~ai----~~Gi~KiNi~T 233 (284)
T PRK09195 215 TKDIQQTI----KLGICKVNVAT 233 (284)
T ss_pred HHHHHHHH----HcCCeEEEeCc
Confidence 77765554 34556555665
No 102
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=84.80 E-value=43 Score=35.04 Aligned_cols=229 Identities=14% Similarity=0.152 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHhccccccccccccccccHhh-cCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEE
Q psy15811 42 EACVETHRDFIRAGADIIQSSCYQANVDNLTK-LGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIET 120 (581)
Q Consensus 42 e~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~-~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~V 120 (581)
+.+.+.-++-++.|-.-|.. |+.-+...+. .|-....-..+..+|++..|+..- ++.|
T Consensus 57 d~l~~~v~~~~~~GI~~v~l--Fgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~p-------------------dl~v 115 (324)
T PF00490_consen 57 DSLVKEVEEAVDLGIRAVIL--FGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFP-------------------DLLV 115 (324)
T ss_dssp HHHHHHHHHHHHTT--EEEE--EEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHST-------------------TSEE
T ss_pred HHHHHHHHHHHHCCCCEEEE--EeeCCcccCCcchhcccCCCChHHHHHHHHHHhCC-------------------CcEE
Confidence 56666667788888864333 4431111111 221111122367888888777652 4445
Q ss_pred Eee--cCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc--CCCcEE
Q psy15811 121 AAS--IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF--PGQKAW 196 (581)
Q Consensus 121 ags--iGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~--~~~pv~ 196 (581)
..+ +-||...-+.|-- . .-.+.++.++-.+...+|+-.++++|+|+|.==-|-|- .+.++.+++.+. .+.|+
T Consensus 116 i~Dvclc~YT~hGHcGil-~-~~~g~idND~Tl~~Lak~Al~~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~v~I- 191 (324)
T PF00490_consen 116 ITDVCLCEYTSHGHCGIL-D-DEDGEIDNDETLERLAKQALSHAEAGADIVAPSDMMDG-RVGAIREALDEAGFSDVPI- 191 (324)
T ss_dssp EEEE-STTTBTSSSSSEB---CTTSSBEHHHHHHHHHHHHHHHHHHT-SEEEE-S--TT-HHHHHHHHHHHTTCTTSEE-
T ss_pred EEecccccccCCCceEEE-E-CCCCeEecHHHHHHHHHHHHHHHHhCCCeeccccccCC-HHHHHHHHHHhCCCCCccE-
Confidence 544 6677765554311 0 01356889999999999999999999999987666665 567777777753 35654
Q ss_pred EEEEEc--C-------------------CCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCC
Q psy15811 197 LSFSCK--D-------------------DTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTV 255 (581)
Q Consensus 197 isft~~--~-------------------~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~ 255 (581)
+|.+.+ + ..+-++-....+|+..+......|+|.+.|-=+.| -+.+++.++.. .++
T Consensus 192 mSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~-~~~ 268 (324)
T PF00490_consen 192 MSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADILMVKPALP--YLDIIRRVKER-FDL 268 (324)
T ss_dssp EEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSGG--GHHHHHHHHHH-CTS
T ss_pred EechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecchh--HHHHHHHHHHh-cCC
Confidence 466643 1 12234555667777665444467899999987755 36788888886 799
Q ss_pred ceEEecCCC-ccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc
Q psy15811 256 QTIVYPNKG-VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA 317 (581)
Q Consensus 256 p~~~~pnag-~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn 317 (581)
|+.+|--+| .-+ |... .. .+ | ++....+.+.+..+-+| +|.|.
T Consensus 269 P~~aYqVSGEYaM--------ikaA--a~--~G--~-----~d~~~~~~Esl~~~kRAGAd~IiTY 315 (324)
T PF00490_consen 269 PVAAYQVSGEYAM--------IKAA--AQ--NG--W-----IDEKRVVLESLLSIKRAGADIIITY 315 (324)
T ss_dssp -EEEEETHHHHHH--------HHHH--HH--TT--S-----S-HHHHHHHHHHHHHHHT-SEEEET
T ss_pred CEEEEEehHHHHH--------HHHH--HH--CC--C-----cchhhHHHHHHHHHHHcCCCEEEee
Confidence 999996555 111 1110 00 11 2 45567888888999999 66664
No 103
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=84.68 E-value=8.8 Score=40.60 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=77.3
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHH-HHhc-CCCeEEEEEEEcCCCcCCC------CCcHHHHHHHHHhhCCCC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKL-LREF-PGQKAWLSFSCKDDTHTSH------GELISSAVTSCLLANPDQ 483 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~-~~~~-~~~pv~iSft~~~~~~l~~------G~~~~~~~~~l~~~~~~~ 483 (581)
..++.+.++|+|.++.- +.+++. .+.+ .++|+++.++-...-...+ -.++++|++ .+
T Consensus 95 ~~i~~a~~~g~dAv~~~--------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlr-------LG 159 (348)
T PRK09250 95 NIVKLAIEAGCNAVAST--------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALR-------LG 159 (348)
T ss_pred HHHHHHHhcCCCEEEeC--------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHH-------CC
Confidence 35566677899999853 555555 3333 4689999886321110001 122444333 36
Q ss_pred ceEEEECC-CCCccchHHHHHHHhh-----CCCCeEEE--eeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEe
Q psy15811 484 IQAIGVNC-VRPSHVSTLVRCIKQS-----HPTVQTIV--YPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIG 555 (581)
Q Consensus 484 ~~~iGiNC-~~p~~~~~~l~~l~~~-----~~~~pl~~--ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiG 555 (581)
+++||+.. .+.+.-...|+.+... ....|+++ ||-.+...+.. .+..+++.++..++--.++|+.||=
T Consensus 160 AdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~----d~~~~~d~Ia~AaRiaaELGADIVK 235 (348)
T PRK09250 160 AVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDG----DYHTAADLTGQANHLAATIGADIIK 235 (348)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcc----cccccHHHHHHHHHHHHHHcCCEEE
Confidence 78999998 5555444555555332 23578664 88755432211 1233467777788888899999987
Q ss_pred ecCCCchHHH
Q psy15811 556 GCCEVTSYEI 565 (581)
Q Consensus 556 GCCGt~P~hI 565 (581)
==.-++++..
T Consensus 236 v~yp~~~~~f 245 (348)
T PRK09250 236 QKLPTNNGGY 245 (348)
T ss_pred ecCCCChhhH
Confidence 5443444443
No 104
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=84.68 E-value=9.3 Score=36.24 Aligned_cols=98 Identities=9% Similarity=-0.023 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHH-hcC--CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCc
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLR-EFP--GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQI 228 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~-~~~--~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~ 228 (581)
+..++.++.+++.|+|.|.+-- ..++.++ ... +.|+++...... +. ....++++.+..+...|+
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~~~~v~~~v~~~~-~~----~~~~~~~~~a~~a~~~Ga 79 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGSDVPVIVVVGFPT-GL----TTTEVKVAEVEEAIDLGA 79 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCCCCeEEEEecCCC-CC----CcHHHHHHHHHHHHHcCC
Confidence 3466778888889999976543 2233332 223 478776543321 11 224555555544446889
Q ss_pred eEEEeCCC-C------hhhHHHHHHHHHhhC-CCCceEEecC
Q psy15811 229 QAIGVNCV-R------PSHVSTLVRCIKQSH-PTVQTIVYPN 262 (581)
Q Consensus 229 ~~vGvNC~-~------p~~~~~~l~~l~~~~-~~~p~~~~pn 262 (581)
+++.+-+. . ++.+.+.++.+.... .++|+++|.+
T Consensus 80 d~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~ 121 (201)
T cd00945 80 DEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILE 121 (201)
T ss_pred CEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 99998764 2 355566666666631 3688888854
No 105
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=84.61 E-value=12 Score=38.60 Aligned_cols=105 Identities=18% Similarity=0.119 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-CCCcEEEEE------ccCCHHHHHHHHHHHHhc-C-CCcEEEEEEEcCCCcCCCCCCH
Q psy15811 143 DSMTEADLIAWHRPNVEALVR-AGVDYLALE------TIPAEKEALALVKLLREF-P-GQKAWLSFSCKDDTHTSHGELI 213 (581)
Q Consensus 143 ~~~~~~~~~~~~~~q~~~l~~-~gvD~l~~E------T~~~~~E~~aa~~a~~~~-~-~~pv~isft~~~~g~l~~G~~~ 213 (581)
+.++.+. ++..++.+++ .|||.|++- ..-+.+|=+.+++.+.+. . .+||++... ..+.
T Consensus 19 g~iD~~~----~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg---------~~~t 85 (293)
T PRK04147 19 GQIDEQG----LRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG---------SVNT 85 (293)
T ss_pred CCcCHHH----HHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC---------CCCH
Confidence 3566644 5667888888 999998653 223667888888766643 2 478887441 2346
Q ss_pred HHHHHHHHhhCCCCceEEEeCCC-----ChhhHHHHHHHHHhhCCCCceEEec
Q psy15811 214 SSAVTSCLLANPDQIQAIGVNCV-----RPSHVSTLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 214 ~~~~~~~~~~~~~~~~~vGvNC~-----~p~~~~~~l~~l~~~~~~~p~~~~p 261 (581)
.++++.+..+...|++++.+--- ..+.+.+..+.+... .++|+++|-
T Consensus 86 ~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a-~~lPv~iYn 137 (293)
T PRK04147 86 AEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDS-ADNPMIVYN 137 (293)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHh-CCCCEEEEe
Confidence 67776665555788888887652 235666677777664 789999994
No 106
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=84.57 E-value=76 Score=36.40 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=65.0
Q ss_pred HHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC-
Q psy15811 159 EALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV- 236 (581)
Q Consensus 159 ~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~- 236 (581)
+...++|+|.| +|-..+++..++.+++++|+. +.-+-+.+++.... -.+++..+..+.++...|++.|.+-=+
T Consensus 103 ~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p----~~t~~~~~~~a~~l~~~Gad~I~i~Dt~ 177 (592)
T PRK09282 103 EKAAENGIDIFRIFDALNDVRNMEVAIKAAKKA-GAHVQGTISYTTSP----VHTIEKYVELAKELEEMGCDSICIKDMA 177 (592)
T ss_pred HHHHHCCCCEEEEEEecChHHHHHHHHHHHHHc-CCEEEEEEEeccCC----CCCHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 34557899987 667888999999999999975 65555444333211 134554444443333578887766443
Q ss_pred ---ChhhHHHHHHHHHhhCCCCceEEec
Q psy15811 237 ---RPSHVSTLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 237 ---~p~~~~~~l~~l~~~~~~~p~~~~p 261 (581)
.|..+..+++.+++. .++||.+..
T Consensus 178 G~~~P~~~~~lv~~lk~~-~~~pi~~H~ 204 (592)
T PRK09282 178 GLLTPYAAYELVKALKEE-VDLPVQLHS 204 (592)
T ss_pred CCcCHHHHHHHHHHHHHh-CCCeEEEEE
Confidence 499999999999985 567777543
No 107
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=84.54 E-value=12 Score=38.57 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCcEEEEE-c-----cCCHHHHHHHHHHHHhc-C-CCcEEEEEEEcCCCcCCCCCCHH
Q psy15811 143 DSMTEADLIAWHRPNVEALVRAGVDYLALE-T-----IPAEKEALALVKLLREF-P-GQKAWLSFSCKDDTHTSHGELIS 214 (581)
Q Consensus 143 ~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E-T-----~~~~~E~~aa~~a~~~~-~-~~pv~isft~~~~g~l~~G~~~~ 214 (581)
+.++.+ .+++.++.+++.|||.+++= | .-+.+|=+.+++.+.+. . ++|+++.. .+.+..
T Consensus 17 g~iD~~----~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv---------~~~~~~ 83 (292)
T PRK03170 17 GSVDFA----ALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGT---------GSNSTA 83 (292)
T ss_pred CCcCHH----HHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeec---------CCchHH
Confidence 356664 45677888889999998732 2 33677877777766643 3 47888643 223456
Q ss_pred HHHHHHHhhCCCCceEEEeCC--C---ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 215 SAVTSCLLANPDQIQAIGVNC--V---RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 215 ~~~~~~~~~~~~~~~~vGvNC--~---~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
++++.+..+...|++++.+== . .++.+.+..+.+... .++|+++|-+
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~-~~~pv~lYn~ 135 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEA-TDLPIILYNV 135 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 777666555578888887732 1 246677777777764 7899999943
No 108
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=84.44 E-value=12 Score=38.83 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCCCEEEec-ccC-----CHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhC
Q psy15811 409 WHRPNVEALVRAGVDYLALE-TIP-----AEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLAN 480 (581)
Q Consensus 409 ~~~~~~~~l~~~gvD~i~~E-T~p-----~~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~ 480 (581)
.++..++.+.+.|||.|++= |.. +.+|-+.+++.+.+. ..+|++++. |.+..++++..+...
T Consensus 27 ~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv----------~~~t~~ai~~a~~a~ 96 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV----------GGNTSDAIEIARLAE 96 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec----------CccHHHHHHHHHHHH
Confidence 35677888888999998763 321 267777777766643 347999876 223567777665555
Q ss_pred CCCceEEEECC--C-C--CccchHHHHHHHhhCCCCeEEEeeCCC
Q psy15811 481 PDQIQAIGVNC--V-R--PSHVSTLVRCIKQSHPTVQTIVYPNKG 520 (581)
Q Consensus 481 ~~~~~~iGiNC--~-~--p~~~~~~l~~l~~~~~~~pl~~ypNag 520 (581)
..+++++.+-- . . .+.+....+.+.... +.|+++|-+.|
T Consensus 97 ~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~-~~pvilYn~~g 140 (296)
T TIGR03249 97 KAGADGYLLLPPYLINGEQEGLYAHVEAVCEST-DLGVIVYQRDN 140 (296)
T ss_pred HhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEeCCC
Confidence 67888776644 1 1 122444455666655 69999997555
No 109
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=84.32 E-value=53 Score=33.75 Aligned_cols=143 Identities=9% Similarity=0.062 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEec----ccC----CHHHHH-HHHHHHHh------cCCCeEEEEEEEcCCCcCCCCCc
Q psy15811 404 ADLIAWHRPNVEALVRAGVDYLALE----TIP----AEKEAL-ALVKLLRE------FPGQKAWLSFSCKDDTHTSHGEL 468 (581)
Q Consensus 404 ~~~~~~~~~~~~~l~~~gvD~i~~E----T~p----~~~Ea~-a~~~~~~~------~~~~pv~iSft~~~~~~l~~G~~ 468 (581)
+.+.+...+.++.+.++|+|+|.+- +.. +..+-+ -+...+++ ..+.|+++|.+.. .
T Consensus 140 ~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~---------~ 210 (306)
T cd00465 140 EYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYD---------A 210 (306)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCC---------H
Confidence 5566778888888999999977544 211 222222 22333332 1366777766432 1
Q ss_pred HHHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHH
Q psy15811 469 ISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLE 548 (581)
Q Consensus 469 ~~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 548 (581)
.+.+..+. ..+++++++-... ..+..+.+. .+. ...+..|.-... . ...+++..+.+++.++
T Consensus 211 -~~~~~~l~---~~~~d~~~~d~~~-~d~~~~~~~---~~~--~~~i~Ggv~~~~--~------~~~~e~i~~~v~~~l~ 272 (306)
T cd00465 211 -ADLLEEMI---QLGVDVISFDMTV-NEPKEAIEK---VGE--KKTLVGGVDPGY--L------PATDEECIAKVEELVE 272 (306)
T ss_pred -HHHHHHHH---HhCcceEeccccc-CCHHHHHHH---hCC--CEEEECCCCccc--c------CCCHHHHHHHHHHHHH
Confidence 23344452 2256655555432 233333333 221 234444442211 1 1235778888888887
Q ss_pred cCC--cEEeecCCCc----h--HHHHHHHHHHh
Q psy15811 549 EGV--NIIGGCCEVT----S--YEIQQMRIMID 573 (581)
Q Consensus 549 ~G~--~iiGGCCGt~----P--~hI~al~~~l~ 573 (581)
.+. -|++--||.- + +.|+++.+.++
T Consensus 273 ~~~~~~il~~~cgi~~~~~~~~enl~a~v~a~~ 305 (306)
T cd00465 273 RLGPHYIINPDCGLGPDSDYKPEHLRAVVQLVD 305 (306)
T ss_pred HhCCCeEEeCCCCCCCCCCCcHHHHHHHHHHhh
Confidence 544 5777667654 3 88998887764
No 110
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=84.29 E-value=10 Score=38.86 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec-cc-----CCHHHHHHHHHHHHhcC--CCeEEEEEEEcCCCcCCCCCcHHH
Q psy15811 400 SMTEADLIAWHRPNVEALVRAGVDYLALE-TI-----PAEKEALALVKLLREFP--GQKAWLSFSCKDDTHTSHGELISS 471 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~gvD~i~~E-T~-----p~~~Ea~a~~~~~~~~~--~~pv~iSft~~~~~~l~~G~~~~~ 471 (581)
.++.+. ++..++.+.+.|||.|++- |. -+..|-+.+++.+.+.. .+|++++.. +.+..+
T Consensus 17 ~iD~~~----~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~ 83 (284)
T cd00950 17 SVDFDA----LERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG---------SNNTAE 83 (284)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC---------CccHHH
Confidence 355544 4566777778999998754 32 34778888887777532 478887763 346677
Q ss_pred HHHHHHhhCCCCceEEEECCCCCc-------cchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 472 AVTSCLLANPDQIQAIGVNCVRPS-------HVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 472 ~~~~l~~~~~~~~~~iGiNC~~p~-------~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
+++.++.....++++|. ...|. .+....+.+.... +.|+++|-+-
T Consensus 84 ~~~~a~~a~~~G~d~v~--~~~P~~~~~~~~~l~~~~~~ia~~~-~~pi~lYn~P 135 (284)
T cd00950 84 AIELTKRAEKAGADAAL--VVTPYYNKPSQEGLYAHFKAIAEAT-DLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHHcCCCEEE--EcccccCCCCHHHHHHHHHHHHhcC-CCCEEEEECh
Confidence 77777655667778444 43332 3444556666654 6999999764
No 111
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=84.14 E-value=18 Score=38.00 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=67.0
Q ss_pred CeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEE
Q psy15811 117 HIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAW 196 (581)
Q Consensus 117 ~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~ 196 (581)
..+|.++| |+|.+ ..|.+++ .+.-.+.+.++|+|.+=+|--. .+...+++.+-+ .++||+
T Consensus 96 ~a~vVaDm-PfgSY-------------~~s~e~a---v~nA~rl~~eaGa~aVKlEGg~--~~~~~~I~~l~~-~GIPV~ 155 (332)
T PLN02424 96 RPLLVGDL-PFGSY-------------ESSTDQA---VESAVRMLKEGGMDAVKLEGGS--PSRVTAAKAIVE-AGIAVM 155 (332)
T ss_pred CCEEEeCC-CCCCC-------------CCCHHHH---HHHHHHHHHHhCCcEEEECCCc--HHHHHHHHHHHH-cCCCEE
Confidence 56777776 55531 1244444 3444455568999999999642 334455555555 389999
Q ss_pred ----EEEEEc--CCCcCCCCCCHHH---HHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCceEE
Q psy15811 197 ----LSFSCK--DDTHTSHGELISS---AVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 197 ----isft~~--~~g~l~~G~~~~~---~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
++-... -+|+-..|.+.++ .++.+......|++++=+-|.-.. +.+.+... .++|.+-
T Consensus 156 gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~----la~~It~~-l~IPtIG 222 (332)
T PLN02424 156 GHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP----VAAAITSA-LQIPTIG 222 (332)
T ss_pred EeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH----HHHHHHHh-CCCCEEe
Confidence 432211 1344445666543 333333344789999999998332 34444443 5566654
No 112
>PLN02417 dihydrodipicolinate synthase
Probab=83.85 E-value=28 Score=35.78 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=73.8
Q ss_pred EEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEE-c-----cCCHHHHHHHHHHHHhc-C
Q psy15811 119 ETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE-T-----IPAEKEALALVKLLREF-P 191 (581)
Q Consensus 119 ~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E-T-----~~~~~E~~aa~~a~~~~-~ 191 (581)
++...+-|+.+ .+.++++. ++++++.+++.|||.|++- | .-+.+|-+.+++.+.+. .
T Consensus 5 v~~a~~TPf~~------------~g~iD~~~----~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~ 68 (280)
T PLN02417 5 LITAIKTPYLP------------DGRFDLEA----YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG 68 (280)
T ss_pred eeeeeeCCcCC------------CCCcCHHH----HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC
Confidence 34556667654 23566644 6778888899999998762 2 22677777777765543 2
Q ss_pred -CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC----C-ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 192 -GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC----V-RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 192 -~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC----~-~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
.+||++.. ...+..++++.+..+...|++++.+== . ..+.+.+..+.+... . |+++|
T Consensus 69 ~~~pvi~gv---------~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~-~--pi~lY 131 (280)
T PLN02417 69 GKIKVIGNT---------GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDM-G--PTIIY 131 (280)
T ss_pred CCCcEEEEC---------CCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhh-C--CEEEE
Confidence 47888644 223456777666555578888777642 1 346666777777663 3 99999
No 113
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=83.78 E-value=20 Score=35.19 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=55.2
Q ss_pred CHHHHHHHHHhhCCCCceEEEeCCC---ChhhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcccCCCC
Q psy15811 212 LISSAVTSCLLANPDQIQAIGVNCV---RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHP 288 (581)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~vGvNC~---~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~ 288 (581)
.+.+.+..+. ..+.|+|.|-=+ ..+.+.++++.+++. .++|+++.|...-.+..+. + .-
T Consensus 12 ~~~~ia~~v~---~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~-~~lPvilfp~~~~~i~~~a-----------D---~~ 73 (205)
T TIGR01769 12 EIEKIAKNAK---DAGTDAIMVGGSLGIVESNLDQTVKKIKKI-TNLPVILFPGNVNGLSRYA-----------D---AV 73 (205)
T ss_pred HHHHHHHHHH---hcCCCEEEEcCcCCCCHHHHHHHHHHHHhh-cCCCEEEECCCccccCcCC-----------C---EE
Confidence 3444333443 477888888754 478999999999986 8999999998875444321 1 22
Q ss_pred cccccccCCChHHHHHHHHHHH
Q psy15811 289 LWSSVYLTTEPEACVETHRDFI 310 (581)
Q Consensus 289 lws~~~~~~~Pe~v~~vh~~yl 310 (581)
++.+.+|..+|+-+-..|...+
T Consensus 74 ~~~sllns~~~~~i~g~~~~~~ 95 (205)
T TIGR01769 74 FFMSLLNSADTYFIVGAQILGA 95 (205)
T ss_pred EEEEeecCCCcchhhhHHHHHH
Confidence 4456667788888877766654
No 114
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=83.68 E-value=13 Score=38.62 Aligned_cols=103 Identities=18% Similarity=0.094 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhCCCCEEEec-ccC-----CHHHHHHHHHHHHhcC--CCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhh
Q psy15811 408 AWHRPNVEALVRAGVDYLALE-TIP-----AEKEALALVKLLREFP--GQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 479 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~E-T~p-----~~~Ea~a~~~~~~~~~--~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~ 479 (581)
+.+++.++.+.+.|||.|++= |.- +.+|=+.+++.+.+.. .+|+++.. .+.+..++++..+..
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---------g~~~t~eai~lak~a 95 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---------GSNSTAEAIELAKHA 95 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---------CCCcHHHHHHHHHHH
Confidence 455677888888999987653 221 2677777777777643 47888877 344566777766555
Q ss_pred CCCCceEEEECC---C--CCccchHHHHHHHhhCCCCeEEEeeCCC
Q psy15811 480 NPDQIQAIGVNC---V--RPSHVSTLVRCIKQSHPTVQTIVYPNKG 520 (581)
Q Consensus 480 ~~~~~~~iGiNC---~--~p~~~~~~l~~l~~~~~~~pl~~ypNag 520 (581)
...+++++-+=. . +.+.+..-.+.+.... +.|+++|-+-+
T Consensus 96 ~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~-~lPvilYN~P~ 140 (299)
T COG0329 96 EKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAV-DLPVILYNIPS 140 (299)
T ss_pred HhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhc-CCCEEEEeCcc
Confidence 567888766654 1 2344556667777776 79999998754
No 115
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=83.64 E-value=31 Score=34.43 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=43.6
Q ss_pred EEEEE-EcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC-Ch--hhHHHHHHHHHhhCCCCceEEecCCCc
Q psy15811 196 WLSFS-CKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-RP--SHVSTLVRCIKQSHPTVQTIVYPNKGV 265 (581)
Q Consensus 196 ~isft-~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~-~p--~~~~~~l~~l~~~~~~~p~~~~pnag~ 265 (581)
|.-|+ ++++.. +...+.++.+. ..|-|+|.|--+ +. +.+..++++++.. .++|++..|...-
T Consensus 16 ~~H~tliDP~k~----~~~~ei~~~~~---~~GTDaImIGGS~gvt~~~~~~~v~~ik~~-~~lPvilfP~~~~ 81 (240)
T COG1646 16 KRHLTLIDPDKT----EEADEIAEAAA---EAGTDAIMIGGSDGVTEENVDNVVEAIKER-TDLPVILFPGSPS 81 (240)
T ss_pred ceEEEEeCcccc----cccHHHHHHHH---HcCCCEEEECCcccccHHHHHHHHHHHHhh-cCCCEEEecCChh
Confidence 56666 444432 33334444443 478899999998 53 5689999999964 8999999999873
No 116
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=83.56 E-value=11 Score=39.55 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=53.9
Q ss_pred HhCCCCEEEecccCCHHHH---HHHHHHHHh-cCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCC
Q psy15811 418 VRAGVDYLALETIPAEKEA---LALVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR 493 (581)
Q Consensus 418 ~~~gvD~i~~ET~p~~~Ea---~a~~~~~~~-~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~ 493 (581)
.+.|+|++.-|.+....=. ......+.. ..+.|+++++... +.+.+.++++.+ ...++++|-+||..
T Consensus 28 ~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~------~~~~~~~aa~~~---~~~G~d~IelN~gc 98 (319)
T TIGR00737 28 AEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGS------DPDTMAEAAKIN---EELGADIIDINMGC 98 (319)
T ss_pred HHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCC------CHHHHHHHHHHH---HhCCCCEEEEECCC
Confidence 3567999998988763111 111222221 1367888888532 223344555544 45578999999965
Q ss_pred Ccc-----------------chHHHHHHHhhCCCCeEEEeeCCC
Q psy15811 494 PSH-----------------VSTLVRCIKQSHPTVQTIVYPNKG 520 (581)
Q Consensus 494 p~~-----------------~~~~l~~l~~~~~~~pl~~ypNag 520 (581)
|.. +..+++.++... +.|+.++-..|
T Consensus 99 P~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~g 141 (319)
T TIGR00737 99 PVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRIG 141 (319)
T ss_pred CHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEcc
Confidence 531 223455565554 58988886544
No 117
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=83.44 E-value=48 Score=32.61 Aligned_cols=148 Identities=12% Similarity=0.033 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhCCCCEEEecccC--CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCce
Q psy15811 408 AWHRPNVEALVRAGVDYLALETIP--AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~ET~p--~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~ 485 (581)
+.....++.+.+.|+|.|++-..- +.......++++|+..++|+++ | ..+.. .+..-++.+ ..
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvil-f--p~~~~-----~i~~~aD~~-------~~ 75 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVIL-F--PGNVN-----GLSRYADAV-------FF 75 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEE-E--CCCcc-----ccCcCCCEE-------EE
Confidence 334456677888999999997544 4566677889999877999998 5 11111 000001111 11
Q ss_pred EEEECCCCCccchHH-HHHH---HhhCC----CCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEE---
Q psy15811 486 AIGVNCVRPSHVSTL-VRCI---KQSHP----TVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII--- 554 (581)
Q Consensus 486 ~iGiNC~~p~~~~~~-l~~l---~~~~~----~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii--- 554 (581)
---+|-..|+.+... .+.+ ++.+. ...+++-|.+..-+-.+ ..-.+...+++-..++..--..|.++|
T Consensus 76 ~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~-a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le 154 (205)
T TIGR01769 76 MSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGK-AREIPYNKPEIAAAYCLAAKYFGMKWVYLE 154 (205)
T ss_pred EEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecC-cccCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 123566677765443 1222 33321 23455555542111111 111223345555555554446676542
Q ss_pred --eecCC--CchHHHHHHHHHH
Q psy15811 555 --GGCCE--VTSYEIQQMRIMI 572 (581)
Q Consensus 555 --GGCCG--t~P~hI~al~~~l 572 (581)
-|. + .+++.|+.+++.+
T Consensus 155 ~~sGa-~~~v~~e~i~~Vk~~~ 175 (205)
T TIGR01769 155 AGSGA-SYPVNPETISLVKKAS 175 (205)
T ss_pred cCCCC-CCCCCHHHHHHHHHhh
Confidence 233 3 5688898888876
No 118
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=83.38 E-value=13 Score=39.24 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCC-Cc-----------cchHH
Q psy15811 433 EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR-PS-----------HVSTL 500 (581)
Q Consensus 433 ~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~-p~-----------~~~~~ 500 (581)
.++....++.+++..++|+++|+...+ -+.+.++++.+ ...++++|-+|+.. |. .+.++
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~------~~e~~~~a~~~---~~agad~ielN~scpp~~~~~~g~~~~~~~~ei 156 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSS------AGGWVDYARQI---EQAGADALELNIYYLPTDPDISGAEVEQRYLDI 156 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCC------HHHHHHHHHHH---HHcCCCEEEEeCCCCCCCCCCccccHHHHHHHH
Confidence 555555555555445799999995421 12334555555 33467888898732 22 14456
Q ss_pred HHHHHhhCCCCeEEEeeC
Q psy15811 501 VRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 501 l~~l~~~~~~~pl~~ypN 518 (581)
++.++... ++|++++-.
T Consensus 157 l~~v~~~~-~iPV~vKl~ 173 (334)
T PRK07565 157 LRAVKSAV-SIPVAVKLS 173 (334)
T ss_pred HHHHHhcc-CCcEEEEeC
Confidence 67777665 689998843
No 119
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=83.31 E-value=57 Score=33.78 Aligned_cols=217 Identities=19% Similarity=0.186 Sum_probs=113.6
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
+.++.-.+.|--+..|-+ .+++-++++++++++. +.||+++++-.. +...
T Consensus 7 ~ll~~A~~~~yAV~AfN~-~n~e~~~avi~AAe~~-~sPvIlq~~~~~-------------~~~~--------------- 56 (287)
T PF01116_consen 7 ELLKKAKEGGYAVPAFNV-YNLETARAVIEAAEEL-NSPVILQISPSE-------------VKYM--------------- 56 (287)
T ss_dssp HHHHHHHHHT-BEEEEE--SSHHHHHHHHHHHHHT-TS-EEEEEEHHH-------------HHHH---------------
T ss_pred HHHHHHHHCCCeEEEEee-CCHHHHHHHHHHHHHh-CCCEEEEcchhh-------------hhhh---------------
Confidence 344444455665555554 5889999999999986 899999886431 1111
Q ss_pred CChhhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHHHHh
Q psy15811 236 VRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIE 315 (581)
Q Consensus 236 ~~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~aiI~ 315 (581)
+.+.+.+.++.+.+. .++|+.+...-+ .+.|.+.+. +++
T Consensus 57 -~~~~~~~~~~~~a~~-~~vPValHLDH~--------------------------------~~~e~i~~a----i~~--- 95 (287)
T PF01116_consen 57 -GLEYLAAMVKAAAEE-ASVPVALHLDHG--------------------------------KDFEDIKRA----IDA--- 95 (287)
T ss_dssp -HHHHHHHHHHHHHHH-STSEEEEEEEEE---------------------------------SHHHHHHH----HHH---
T ss_pred -hHHHHHHHHHHHHHH-cCCCEEeecccC--------------------------------CCHHHHHHH----HHh---
Confidence 235566777777776 678888772221 123444322 121
Q ss_pred hcCCcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCC
Q psy15811 316 TAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSG 395 (581)
Q Consensus 316 Tna~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g 395 (581)
+|.+...|+|. ++-++..++.+..|++|+.. .+-|=|-+|-.|.. .++.+...
T Consensus 96 ------GftSVM~DgS~--------l~~eeNi~~T~~vv~~ah~~------------gv~VEaElG~i~g~-ed~~~~~~ 148 (287)
T PF01116_consen 96 ------GFTSVMIDGSA--------LPFEENIAITREVVEYAHAY------------GVSVEAELGHIGGK-EDGIESEE 148 (287)
T ss_dssp ------TSSEEEEE-TT--------S-HHHHHHHHHHHHHHHHHT------------T-EEEEEESBSSSS-CTTCSSST
T ss_pred ------CcccccccCCc--------CCHHHHHHHHHHHHHhhhhh------------CCEEEEEeeeeecc-CCCccccc
Confidence 22233334443 34555556667777776664 26677777776532 22222211
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec--c---------cCCHHHHHHHHHHHHhcC-CCeEEEEEEEcCCCc
Q psy15811 396 H-YVDSMTEADLIAWHRPNVEALVRAGVDYLALE--T---------IPAEKEALALVKLLREFP-GQKAWLSFSCKDDTH 462 (581)
Q Consensus 396 ~-y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~E--T---------~p~~~Ea~a~~~~~~~~~-~~pv~iSft~~~~~~ 462 (581)
. -.--+++++..+|.+ +.|||.|.+- | -|.+ + ...++.+++.. ++|..+|=
T Consensus 149 ~~~~~~TdP~~a~~Fv~-------~TgvD~LAvaiGt~HG~y~~~~~p~L-d-~~~L~~I~~~~~~iPLVlHG------- 212 (287)
T PF01116_consen 149 ETESLYTDPEEAKEFVE-------ETGVDALAVAIGTAHGMYKGGKKPKL-D-FDRLKEIREAVPDIPLVLHG------- 212 (287)
T ss_dssp T-TTCSSSHHHHHHHHH-------HHTTSEEEE-SSSBSSSBSSSSSTC----HHHHHHHHHHHHTSEEEESS-------
T ss_pred cccccccCHHHHHHHHH-------HhCCCEEEEecCccccccCCCCCccc-C-HHHHHHHHHhcCCCCEEEEC-------
Confidence 1 001246666666554 4699998764 2 2331 1 23334444434 78877543
Q ss_pred CCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 463 TSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 463 l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
.+|.+-++.-+.+ ..++.=|.|+-
T Consensus 213 -gSG~~~e~~~~ai----~~Gi~KiNi~T 236 (287)
T PF01116_consen 213 -GSGLPDEQIRKAI----KNGISKINIGT 236 (287)
T ss_dssp -CTTS-HHHHHHHH----HTTEEEEEESH
T ss_pred -CCCCCHHHHHHHH----HcCceEEEEeh
Confidence 3566666666655 23555344433
No 120
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=82.88 E-value=18 Score=37.48 Aligned_cols=104 Identities=12% Similarity=0.057 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCcEEEE-----Ec-cCCHHHHHHHHHHHHh-cC-CCcEEEEEEEcCCCcCCCCCCHH
Q psy15811 143 DSMTEADLIAWHRPNVEALVRAGVDYLAL-----ET-IPAEKEALALVKLLRE-FP-GQKAWLSFSCKDDTHTSHGELIS 214 (581)
Q Consensus 143 ~~~~~~~~~~~~~~q~~~l~~~gvD~l~~-----ET-~~~~~E~~aa~~a~~~-~~-~~pv~isft~~~~g~l~~G~~~~ 214 (581)
+.++++.+ +++++.+++.|||.|++ |. .-+.+|=+.+++.+.+ .. .+||++... +.+..
T Consensus 16 g~iD~~~l----~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~---------~~~t~ 82 (294)
T TIGR02313 16 GDIDEEAL----RELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG---------ALNHD 82 (294)
T ss_pred CCcCHHHH----HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC---------cchHH
Confidence 35777555 56788888899999864 32 2266777777776543 32 588886432 23456
Q ss_pred HHHHHHHhhCCCCceEEEeCC----C-ChhhHHHHHHHHHhhCC-CCceEEe
Q psy15811 215 SAVTSCLLANPDQIQAIGVNC----V-RPSHVSTLVRCIKQSHP-TVQTIVY 260 (581)
Q Consensus 215 ~~~~~~~~~~~~~~~~vGvNC----~-~p~~~~~~l~~l~~~~~-~~p~~~~ 260 (581)
++++.+..+...|++++.+== . ..+.+....+.+... + ++|+++|
T Consensus 83 ~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a-~~~lpv~iY 133 (294)
T TIGR02313 83 ETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADA-VPDFPIIIY 133 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHh-ccCCCEEEE
Confidence 666655555567888777643 1 346677777777765 6 8999999
No 121
>PRK15063 isocitrate lyase; Provisional
Probab=82.77 E-value=43 Score=36.54 Aligned_cols=133 Identities=16% Similarity=0.204 Sum_probs=79.7
Q ss_pred HHHHHHHhCCCCEEEecccC---------------CHHHHHHHHHHHH---hcCCCeEEEEEEEcCC-------------
Q psy15811 412 PNVEALVRAGVDYLALETIP---------------AEKEALALVKLLR---EFPGQKAWLSFSCKDD------------- 460 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p---------------~~~Ea~a~~~~~~---~~~~~pv~iSft~~~~------------- 460 (581)
+.++.+.++||-.|-||+.- ...|...=+.+++ ...+.|++|---.+..
T Consensus 165 ~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD 244 (428)
T PRK15063 165 ELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERD 244 (428)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccccccc
Confidence 55788889999999999861 1344443333433 1246675554433221
Q ss_pred ------CcCCCC-----CcHHHHHHHHHhhCCCCceEEEECC--CCCccchHHHHHHHhhCCCCe--EEEeeCCCCCccc
Q psy15811 461 ------THTSHG-----ELISSAVTSCLLANPDQIQAIGVNC--VRPSHVSTLVRCIKQSHPTVQ--TIVYPNKGGVWDS 525 (581)
Q Consensus 461 ------~~l~~G-----~~~~~~~~~l~~~~~~~~~~iGiNC--~~p~~~~~~l~~l~~~~~~~p--l~~ypNag~~~~~ 525 (581)
.++..| ..++++++..+.... +++.|=+-. .+++.+..+.+.++. ..| +++|+.+. ..
T Consensus 245 ~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~---~~P~~~layn~sP---sf 317 (428)
T PRK15063 245 RPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETSTPDLEEARRFAEAIHA---KFPGKLLAYNCSP---SF 317 (428)
T ss_pred cccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcc---cCccceeecCCCC---Cc
Confidence 123333 468999998876655 888543332 123344444444432 235 77774332 12
Q ss_pred ccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 526 VHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
.|..+.+++.+..|.++..+.|.+++
T Consensus 318 ---nW~~~~~~~~~~~f~~eL~~~Gy~~~ 343 (428)
T PRK15063 318 ---NWKKNLDDATIAKFQRELGAMGYKFQ 343 (428)
T ss_pred ---ccccccCHHHHHHHHHHHHHcCceEE
Confidence 37777788899999999999997664
No 122
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=82.77 E-value=33 Score=36.41 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=71.6
Q ss_pred HHHHHHHhCCCCEEEecccCCH---------------------------HHHHHHHHHHHhc-CCCeEEEEEEEcCCCcC
Q psy15811 412 PNVEALVRAGVDYLALETIPAE---------------------------KEALALVKLLREF-PGQKAWLSFSCKDDTHT 463 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~---------------------------~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l 463 (581)
+.++.+.+.|+.++..=|+... ......++-+++. .++|+++|+.+... .
T Consensus 73 ~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~--~ 150 (344)
T PRK05286 73 EAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNKD--T 150 (344)
T ss_pred HHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCC--C
Confidence 4555567778888877766431 1133344444432 47899999976432 2
Q ss_pred CCCCcHHHHHHHHHhhCCCCceEEEECCCCCc-----------cchHHHHHHHhhCC----CCeEEEeeCCCCCcccccc
Q psy15811 464 SHGELISSAVTSCLLANPDQIQAIGVNCVRPS-----------HVSTLVRCIKQSHP----TVQTIVYPNKGGVWDSVHM 528 (581)
Q Consensus 464 ~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~-----------~~~~~l~~l~~~~~----~~pl~~ypNag~~~~~~~~ 528 (581)
..+.+.+|.++.+... ...+++|-+|+..|. .+.++++.++.... ++|+++.-... .
T Consensus 151 ~~~~~~~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~----~--- 222 (344)
T PRK05286 151 PLEDAVDDYLICLEKL-YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPD----L--- 222 (344)
T ss_pred CcccCHHHHHHHHHHH-HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC----C---
Confidence 2234555555555333 235788899986553 35566777776542 27888776632 1
Q ss_pred cccCCcCHHHHHHHHHHHHHcCC
Q psy15811 529 KWLDTEDEYSILHYVPQWLEEGV 551 (581)
Q Consensus 529 ~~~~~~~~~~~~~~~~~w~~~G~ 551 (581)
+.+++.+.++...+.|+
T Consensus 223 ------~~~~~~~ia~~l~~~Ga 239 (344)
T PRK05286 223 ------SDEELDDIADLALEHGI 239 (344)
T ss_pred ------CHHHHHHHHHHHHHhCC
Confidence 12345566666666554
No 123
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=82.71 E-value=16 Score=40.78 Aligned_cols=65 Identities=25% Similarity=0.291 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCCcEEEEEc-cCCHHHHHHHHHHHHh-cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEE
Q psy15811 155 RPNVEALVRAGVDYLALET-IPAEKEALALVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIG 232 (581)
Q Consensus 155 ~~q~~~l~~~gvD~l~~ET-~~~~~E~~aa~~a~~~-~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vG 232 (581)
.++++.|+++|+|+|.+.+ -.+...+...++.+++ .+++|+++ | ++.+.+++...+ ..|+++|.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-------g---~v~t~e~a~~l~----~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-------G---NVATAEAARALI----EAGADAVK 295 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-------e---ccCCHHHHHHHH----HcCCCEEE
Confidence 6789999999999998886 3566666777777774 45889887 1 455666665443 36888886
Q ss_pred e
Q psy15811 233 V 233 (581)
Q Consensus 233 v 233 (581)
+
T Consensus 296 v 296 (486)
T PRK05567 296 V 296 (486)
T ss_pred E
Confidence 5
No 124
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=82.57 E-value=8.9 Score=40.35 Aligned_cols=92 Identities=11% Similarity=0.069 Sum_probs=53.0
Q ss_pred HCCCcEEEEEccCCHHHHHH---HHHHHHh-cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCCh
Q psy15811 163 RAGVDYLALETIPAEKEALA---LVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRP 238 (581)
Q Consensus 163 ~~gvD~l~~ET~~~~~E~~a---a~~a~~~-~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p 238 (581)
+.|+|+..-|-++.-..... ....... -...|+.+|+ .|.++++.++.+......+++.|-+||++|
T Consensus 31 ~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl---------~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP 101 (321)
T PRK10415 31 EMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI---------AGSDPKEMADAARINVESGAQIIDINMGCP 101 (321)
T ss_pred HHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE---------eCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 45889988887776432111 1111111 1135666666 344455444333222246899999999866
Q ss_pred h-----------------hHHHHHHHHHhhCCCCceEEecCCC
Q psy15811 239 S-----------------HVSTLVRCIKQSHPTVQTIVYPNKG 264 (581)
Q Consensus 239 ~-----------------~~~~~l~~l~~~~~~~p~~~~pnag 264 (581)
. .+.++++.+++. .+.|++++-+.|
T Consensus 102 ~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d~pv~vKiR~G 143 (321)
T PRK10415 102 AKKVNRKLAGSALLQYPDLVKSILTEVVNA-VDVPVTLKIRTG 143 (321)
T ss_pred HHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cCCceEEEEEcc
Confidence 3 455667777664 678888876644
No 125
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=82.57 E-value=11 Score=39.92 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=63.1
Q ss_pred HHHHHHHCCCcEEEEEccCCH---------------------------HHHHHHHHHHHhc-CCCcEEEEEEEcCCCcCC
Q psy15811 157 NVEALVRAGVDYLALETIPAE---------------------------KEALALVKLLREF-PGQKAWLSFSCKDDTHTS 208 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~---------------------------~E~~aa~~a~~~~-~~~pv~isft~~~~g~l~ 208 (581)
.++.+.+.|+.++..=|++.. ..+...++-+++. .++|+++|+.... .+.
T Consensus 74 ~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~--~~~ 151 (344)
T PRK05286 74 AIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNK--DTP 151 (344)
T ss_pred HHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCC--CCC
Confidence 345567888888887777532 0133334444432 4789999996542 123
Q ss_pred CCCCHHHHHHHHHhhCCCCceEEEeCCCCh-----------hhHHHHHHHHHhhCC----CCceEEecC
Q psy15811 209 HGELISSAVTSCLLANPDQIQAIGVNCVRP-----------SHVSTLVRCIKQSHP----TVQTIVYPN 262 (581)
Q Consensus 209 ~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p-----------~~~~~~l~~l~~~~~----~~p~~~~pn 262 (581)
.+..+++.+..+.+.. ..++++-+|+++| +.+.++++.+++... ++||+++.+
T Consensus 152 ~~~~~~d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKls 219 (344)
T PRK05286 152 LEDAVDDYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIA 219 (344)
T ss_pred cccCHHHHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeC
Confidence 3455666665554432 3589999999765 346678888887522 267777644
No 126
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=82.48 E-value=19 Score=39.74 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCCcEEEEEc-cCCHHHHHHHHHHHHhc-CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 154 HRPNVEALVRAGVDYLALET-IPAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET-~~~~~E~~aa~~a~~~~-~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
..++++.|+++|+|+|.+-+ ..+-..+...++.+|+. +++||++ | +..+.+++...+ ..|+++|
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-------G---~v~t~~~a~~l~----~aGad~i 290 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-------G---NVATAEQAKALI----DAGADGL 290 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-------E---eCCCHHHHHHHH----HhCCCEE
Confidence 34678899999999999876 33445666777777754 7899887 2 234555554333 3688887
Q ss_pred EeC
Q psy15811 232 GVN 234 (581)
Q Consensus 232 GvN 234 (581)
.|-
T Consensus 291 ~vg 293 (450)
T TIGR01302 291 RVG 293 (450)
T ss_pred EEC
Confidence 653
No 127
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=82.17 E-value=73 Score=33.77 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=87.7
Q ss_pred CCCCHH---HHHHHHHHHHHHHHHCCCcEEEEEcc----------C-----------CH----HHHHHHHHHHHhcCCCc
Q psy15811 143 DSMTEA---DLIAWHRPNVEALVRAGVDYLALETI----------P-----------AE----KEALALVKLLREFPGQK 194 (581)
Q Consensus 143 ~~~~~~---~~~~~~~~q~~~l~~~gvD~l~~ET~----------~-----------~~----~E~~aa~~a~~~~~~~p 194 (581)
+.+|.+ ++.+.|..-++...++|.|.|=+=.- | ++ .=+..+++++|+..+.|
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~ 209 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGP 209 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 467765 46677888888888899999854322 1 11 22334566666544678
Q ss_pred EEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC---------hhhHHHHHHHHHhhCCCCceEEecCCCc
Q psy15811 195 AWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR---------PSHVSTLVRCIKQSHPTVQTIVYPNKGV 265 (581)
Q Consensus 195 v~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~---------p~~~~~~l~~l~~~~~~~p~~~~pnag~ 265 (581)
|.+-++..+ ....|.++++.+..+......++|.|-|-... +....++.+.+++. .++|+++- .++
T Consensus 210 v~vRis~~d--~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~-~~ipVi~~--G~i 284 (337)
T PRK13523 210 LFVRISASD--YHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREH-ANIATGAV--GLI 284 (337)
T ss_pred eEEEecccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhh-cCCcEEEe--CCC
Confidence 887776543 34457788877654433335678887775532 11123566777764 56776653 111
Q ss_pred cccCCCchhhhccccCcccCCCCcccccccCCChHHHHHH
Q psy15811 266 KLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVET 305 (581)
Q Consensus 266 ~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~v 305 (581)
.+..++.++.+..+.++.+ -.+.++.+|+.+.++
T Consensus 285 --~~~~~a~~~l~~g~~D~V~----~gR~~iadP~~~~k~ 318 (337)
T PRK13523 285 --TSGAQAEEILQNNRADLIF----IGRELLRNPYFPRIA 318 (337)
T ss_pred --CCHHHHHHHHHcCCCChHH----hhHHHHhCccHHHHH
Confidence 2223344444441234321 245577899998887
No 128
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=81.72 E-value=47 Score=35.65 Aligned_cols=116 Identities=13% Similarity=0.151 Sum_probs=57.6
Q ss_pred CceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-EecccCC------HHHHHHHHHHHHh
Q psy15811 373 SSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYL-ALETIPA------EKEALALVKLLRE 445 (581)
Q Consensus 373 ~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i-~~ET~p~------~~Ea~a~~~~~~~ 445 (581)
+.++..-+=|.| ++.+++. +.+..+..+|||+| --|.+.+ .+-.+++.+++++
T Consensus 126 rPl~~tiiKP~G----------------L~~~~~a----~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~ 185 (364)
T cd08210 126 RPLLCSALKPQG----------------LSAAELA----ELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAE 185 (364)
T ss_pred CceEEEEecccc----------------CCHHHHH----HHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHH
Confidence 456776677753 5555544 45555666899998 3333322 3344455555553
Q ss_pred ---cCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCC-CeEEEeeCC
Q psy15811 446 ---FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPT-VQTIVYPNK 519 (581)
Q Consensus 446 ---~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~-~pl~~ypNa 519 (581)
.++..+...+.+ .+. ..++++........++.++.+|-... -...|+.++... . .|+..+|+.
T Consensus 186 a~~eTG~~~~y~~Ni-------ta~-~~em~~ra~~a~~~Ga~~vMv~~~~~--G~~~~~~l~~~~-~~l~i~aHra~ 252 (364)
T cd08210 186 ANAETGGRTLYAPNV-------TGP-PTQLLERARFAKEAGAGGVLIAPGLT--GLDTFRELAEDF-DFLPILAHPAF 252 (364)
T ss_pred HHhhcCCcceEEEec-------CCC-HHHHHHHHHHHHHcCCCEEEeecccc--hHHHHHHHHhcC-CCcEEEEcccc
Confidence 345444444433 122 33555544333445556666666211 112333344332 4 556666554
No 129
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=81.65 E-value=17 Score=37.46 Aligned_cols=103 Identities=16% Similarity=0.097 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhC-CCCEEEeccc-C-----CHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHh
Q psy15811 408 AWHRPNVEALVRA-GVDYLALETI-P-----AEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 478 (581)
Q Consensus 408 ~~~~~~~~~l~~~-gvD~i~~ET~-p-----~~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~ 478 (581)
+.++..++.+.+. |||.|++--. . +..|-+.+++.+.+. ..+|+++... ..+..++++....
T Consensus 21 ~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~---------~~~~~~ai~~a~~ 91 (288)
T cd00954 21 DVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG---------SLNLKESQELAKH 91 (288)
T ss_pred HHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC---------CCCHHHHHHHHHH
Confidence 3455677777778 9999865432 1 167777777766642 2478887762 3456777776655
Q ss_pred hCCCCceEEEECC--C---CCccchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 479 ANPDQIQAIGVNC--V---RPSHVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 479 ~~~~~~~~iGiNC--~---~p~~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
....+++++-+-- . +.+.+....+.+....++.|+++|-|-
T Consensus 92 a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 92 AEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred HHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 5567788666544 1 123355556666665535899999764
No 130
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=81.63 E-value=76 Score=33.64 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=56.0
Q ss_pred CCCCCHHH---HHHHHHHHHHHHHHCCCcEEEEEc----------cC-----------C----HHHHHHHHHHHHhcCCC
Q psy15811 142 VDSMTEAD---LIAWHRPNVEALVRAGVDYLALET----------IP-----------A----EKEALALVKLLREFPGQ 193 (581)
Q Consensus 142 ~~~~~~~~---~~~~~~~q~~~l~~~gvD~l~~ET----------~~-----------~----~~E~~aa~~a~~~~~~~ 193 (581)
.+++|.+| +.+.|..-++-..++|.|.|=+=. -| + ..-+..+++++|+..+.
T Consensus 128 ~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 128 PKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 35677665 556677666667779999984433 11 1 13344677777765455
Q ss_pred cEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCC-ceEEEeCC
Q psy15811 194 KAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQ-IQAIGVNC 235 (581)
Q Consensus 194 pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~-~~~vGvNC 235 (581)
++.+.+-+..+.....|.++++.+..+......+ ++.+=|-+
T Consensus 208 ~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 208 DFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred CCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 5555544443334556788887765544333565 78777744
No 131
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=81.57 E-value=29 Score=35.42 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=69.3
Q ss_pred CceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEE
Q psy15811 373 SSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAW 452 (581)
Q Consensus 373 ~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~ 452 (581)
+.+|+.++|= + .|. +. .+.++...+.+.++|+|.+=+|.- .|....++.+.+ .++||+
T Consensus 76 ~~~vv~DmPf-~-----------sy~---~~---e~a~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~-~gIpV~ 133 (263)
T TIGR00222 76 NCLIVTDLPF-M-----------SYA---TP---EQALKNAARVMQETGANAVKLEGG---EWLVETVQMLTE-RGVPVV 133 (263)
T ss_pred CceEEeCCCc-C-----------CCC---CH---HHHHHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHH-CCCCEE
Confidence 4688888854 2 343 23 344445556666799999999985 344444566666 699999
Q ss_pred -------EEEEEcCCCcCCCCCc---HHHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEE
Q psy15811 453 -------LSFSCKDDTHTSHGEL---ISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIV 515 (581)
Q Consensus 453 -------iSft~~~~~~l~~G~~---~~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ 515 (581)
.+... +.|....|.+ ..++++..+.+..+++++|=+-|+.. .+.+.+.... ++|++-
T Consensus 134 gHiGltPq~a~~-~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~vp~----~~a~~It~~l-~iP~iG 200 (263)
T TIGR00222 134 GHLGLTPQSVNI-LGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLECVPV----ELAAKITEAL-AIPVIG 200 (263)
T ss_pred EecCCCceeEee-cCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCCcH----HHHHHHHHhC-CCCEEe
Confidence 33322 1223334655 34555555445678899999999664 3334454443 577654
No 132
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=81.50 E-value=7.4 Score=40.73 Aligned_cols=61 Identities=13% Similarity=0.000 Sum_probs=38.8
Q ss_pred CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCC-ceEEEeCCCCh------------hhHHHHHHHHHhhCCCCce
Q psy15811 191 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQ-IQAIGVNCVRP------------SHVSTLVRCIKQSHPTVQT 257 (581)
Q Consensus 191 ~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~-~~~vGvNC~~p------------~~~~~~l~~l~~~~~~~p~ 257 (581)
++.|+++|+... ++++....+......+ +++|=+|+++| +.+.++++.+++. .++|+
T Consensus 91 ~~~pvI~Si~G~---------~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~-~~~Pv 160 (310)
T PRK02506 91 PNKPHFLSVVGL---------SPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTY-FTKPL 160 (310)
T ss_pred CCCCEEEEEEeC---------cHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHh-cCCcc
Confidence 368999998543 2333332222222344 89999999865 5566777888775 66787
Q ss_pred EEec
Q psy15811 258 IVYP 261 (581)
Q Consensus 258 ~~~p 261 (581)
+++.
T Consensus 161 ~vKl 164 (310)
T PRK02506 161 GVKL 164 (310)
T ss_pred EEec
Confidence 7653
No 133
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=81.22 E-value=24 Score=36.27 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCcEEEE-----E-ccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHH
Q psy15811 144 SMTEADLIAWHRPNVEALVRAGVDYLAL-----E-TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAV 217 (581)
Q Consensus 144 ~~~~~~~~~~~~~q~~~l~~~gvD~l~~-----E-T~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~ 217 (581)
.++.+. ++++++.+++.|||.|++ | ..-+.+|-+.+++.+.+..+ +|++.. .+.+..+++
T Consensus 16 ~iD~~~----~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gv---------g~~~~~~ai 81 (279)
T cd00953 16 KIDKEK----FKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-KVIFQV---------GSLNLEESI 81 (279)
T ss_pred CcCHHH----HHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-CEEEEe---------CcCCHHHHH
Confidence 466544 566788888999999876 4 23377888888887765444 454322 124467777
Q ss_pred HHHHhhCCCCceEEEeCC--C----ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 218 TSCLLANPDQIQAIGVNC--V----RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 218 ~~~~~~~~~~~~~vGvNC--~----~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
+.+..+...|++++.+=- - .++.+....+.+.. ++|+++|
T Consensus 82 ~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~---~lpv~iY 127 (279)
T cd00953 82 ELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS---PYPTFIY 127 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh---cCCEEEE
Confidence 666555678899888722 1 23455555666555 6899999
No 134
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=81.13 E-value=4.5 Score=42.99 Aligned_cols=57 Identities=25% Similarity=0.437 Sum_probs=44.6
Q ss_pred CeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEc-cCCHHHHHHHHHHHH-hcCCCc
Q psy15811 117 HIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALET-IPAEKEALALVKLLR-EFPGQK 194 (581)
Q Consensus 117 ~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET-~~~~~E~~aa~~a~~-~~~~~p 194 (581)
+.+|+.++||..+ +.++++.|+++|||+|.+-+ -.+.+.....++.+| +++++|
T Consensus 96 ~l~V~aavg~~~~------------------------~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~ 151 (352)
T PF00478_consen 96 RLLVAAAVGTRDD------------------------DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVP 151 (352)
T ss_dssp CBCEEEEEESSTC------------------------HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSE
T ss_pred cceEEEEecCCHH------------------------HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCce
Confidence 7899999999764 46789999999999999984 456667777788887 457789
Q ss_pred EEE
Q psy15811 195 AWL 197 (581)
Q Consensus 195 v~i 197 (581)
|++
T Consensus 152 via 154 (352)
T PF00478_consen 152 VIA 154 (352)
T ss_dssp EEE
T ss_pred EEe
Confidence 886
No 135
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=80.87 E-value=68 Score=32.53 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=61.4
Q ss_pred HHHHHhCCCCEEEeccc-CCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-
Q psy15811 414 VEALVRAGVDYLALETI-PAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC- 491 (581)
Q Consensus 414 ~~~l~~~gvD~i~~ET~-p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC- 491 (581)
++...++|+|.|-+-+. +...+++.+++.+++ .+..+.+++.. .. ..+.+..++.+......+++.|.+--
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~-~G~~v~~~~~~--~~----~~~~~~~~~~~~~~~~~G~d~i~l~DT 163 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARK-LGMDVVGFLMM--SH----MASPEELAEQAKLMESYGADCVYVTDS 163 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHH-CCCeEEEEEEe--cc----CCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 55566789999866543 346677888888887 47776666632 11 23344443333222345677777753
Q ss_pred ---CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 492 ---VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 492 ---~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
..|..+..+++.++...+.+|+.+...
T Consensus 164 ~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 164 AGAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 368889999999988653237766553
No 136
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=80.81 E-value=71 Score=32.73 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=64.0
Q ss_pred HHHHHHHhCCCCEEEeccc-CCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEEC
Q psy15811 412 PNVEALVRAGVDYLALETI-PAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 490 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~-p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiN 490 (581)
.-++...++|+|.|-+-+- +++..++.+++.+|+ .++.+.+.+++.+.++ .+-+.+.+.++.+ ...+++.|.+-
T Consensus 95 ~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~-~G~~v~~~i~~~~~~~-~~~~~~~~~~~~~---~~~Ga~~i~l~ 169 (275)
T cd07937 95 LFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKK-AGKHVEGAICYTGSPV-HTLEYYVKLAKEL---EDMGADSICIK 169 (275)
T ss_pred HHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHH-CCCeEEEEEEecCCCC-CCHHHHHHHHHHH---HHcCCCEEEEc
Confidence 3445566789999766543 457778888888887 4777666554433322 1222344444444 34466766665
Q ss_pred C----CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 491 C----VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 491 C----~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
- ..|..+..+++.++... ++|+.+...
T Consensus 170 DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~H 200 (275)
T cd07937 170 DMAGLLTPYAAYELVKALKKEV-GLPIHLHTH 200 (275)
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 4 26888999999998875 477776653
No 137
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=80.72 E-value=49 Score=31.79 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCEEEe-----cccCCHHHHHHHHHHHHhcCCCeEEEEEEEcC
Q psy15811 410 HRPNVEALVRAGVDYLAL-----ETIPAEKEALALVKLLREFPGQKAWLSFSCKD 459 (581)
Q Consensus 410 ~~~~~~~l~~~gvD~i~~-----ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~ 459 (581)
+.+.++.+.++|+|.|-+ ...+.......+++.+++..+.|+-+.+.+.+
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d 68 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVEN 68 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCC
Confidence 456888899999999977 33444322223555565433567667776653
No 138
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=80.58 E-value=70 Score=32.56 Aligned_cols=155 Identities=16% Similarity=0.183 Sum_probs=88.6
Q ss_pred HHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEE-E
Q psy15811 413 NVEALVRAGVDYLALETIPA---EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI-G 488 (581)
Q Consensus 413 ~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~i-G 488 (581)
.++.+...++|++.+-+.|. ......++..+++..++|+++|++|++.++ ..+.+.+..+.+..-.++.++ |
T Consensus 20 ~~~~~~~~~~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~----~~l~~~L~~~~~~Gi~~iL~l~G 95 (274)
T cd00537 20 AADLLGALDPDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNR----IELQSILLGAHALGIRNILALRG 95 (274)
T ss_pred HHHHhhcCCCCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCCH----HHHHHHHHHHHHCCCCeEEEeCC
Confidence 33344444599999998887 444555666666556899999999988665 345555555532221222322 1
Q ss_pred ECC----------CCCccchHHHHHHHhhC---CCCeEEEeeCCCCCccccc--------------ccc---cCCcCHHH
Q psy15811 489 VNC----------VRPSHVSTLVRCIKQSH---PTVQTIVYPNKGGVWDSVH--------------MKW---LDTEDEYS 538 (581)
Q Consensus 489 iNC----------~~p~~~~~~l~~l~~~~---~~~pl~~ypNag~~~~~~~--------------~~~---~~~~~~~~ 538 (581)
=.- ....+..++++.++... ..+.+..|| .|.+...+. ..+ +.-.|++.
T Consensus 96 D~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP-e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~fd~~~ 174 (274)
T cd00537 96 DPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYP-EGHPEAPSLEEDIKRLKRKVDAGADFIITQLFFDNDA 174 (274)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCC-CcCCCCCCHHHHHHHHHHHHHCCCCEEeecccccHHH
Confidence 111 12223556677776531 235577788 333322210 001 01125677
Q ss_pred HHHHHHHHHHcC--CcEEeecCCC-chHHHHHHHHHH
Q psy15811 539 ILHYVPQWLEEG--VNIIGGCCEV-TSYEIQQMRIMI 572 (581)
Q Consensus 539 ~~~~~~~w~~~G--~~iiGGCCGt-~P~hI~al~~~l 572 (581)
+.+++++..+.| +.|+-|=-.. +...++.|.+.+
T Consensus 175 ~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~ 211 (274)
T cd00537 175 FLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLC 211 (274)
T ss_pred HHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhh
Confidence 788888877887 6666665554 668888887766
No 139
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=80.53 E-value=38 Score=34.76 Aligned_cols=98 Identities=12% Similarity=0.147 Sum_probs=62.4
Q ss_pred HHHHHHHCCCcEEEE-EccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 157 NVEALVRAGVDYLAL-ETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 157 q~~~l~~~gvD~l~~-ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
-++...+.|+|.+-+ -..++++.++.+++.+|+. +..+.+.+++...++. +-..+.+.++++. ..|++.|.+-=
T Consensus 96 di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~-G~~v~~~i~~~~~~~~-~~~~~~~~~~~~~---~~Ga~~i~l~D 170 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKA-GKHVEGAICYTGSPVH-TLEYYVKLAKELE---DMGADSICIKD 170 (275)
T ss_pred HHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCCC-CHHHHHHHHHHHH---HcCCCEEEEcC
Confidence 345566889998744 4556888899999999876 6665554444332222 2222334444443 56788777654
Q ss_pred C----ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 236 V----RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 236 ~----~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
+ .|..+..+++.+++. .+.||.+.
T Consensus 171 T~G~~~P~~v~~lv~~l~~~-~~~~l~~H 198 (275)
T cd07937 171 MAGLLTPYAAYELVKALKKE-VGLPIHLH 198 (275)
T ss_pred CCCCCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 4 499999999999985 44555544
No 140
>PRK12677 xylose isomerase; Provisional
Probab=80.50 E-value=56 Score=35.33 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhccc--cccccccccccccHhhc-CCC---HHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCC
Q psy15811 43 ACVETHRDFIRAGAD--IIQSSCYQANVDNLTKL-GYS---EQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTG 116 (581)
Q Consensus 43 ~v~~iH~~yl~AGAd--iI~TnTf~a~~~~l~~~-g~~---~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~ 116 (581)
.++++.+.--+.|-. .+++|+|.-...+...+ .-+ .....+..++++++|++.=.+
T Consensus 68 ~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~------------------ 129 (384)
T PRK12677 68 IIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAK------------------ 129 (384)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCC------------------
Confidence 466666666688888 57788886433222211 111 122233466666666554221
Q ss_pred CeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH----CC--CcEEEEEccC----------CHHHH
Q psy15811 117 HIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVR----AG--VDYLALETIP----------AEKEA 180 (581)
Q Consensus 117 ~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~----~g--vD~l~~ET~~----------~~~E~ 180 (581)
.+.|. .|.- +.+|. ...+.++..+.+++-++.+.+ .| |. |++|..| +..++
T Consensus 130 ~Vvv~--~G~~------g~~~~----~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~-laIEpkp~ep~~~~~l~t~~~a 196 (384)
T PRK12677 130 TYVMW--GGRE------GAEYD----AAKDVRAALDRYREAIDLLAAYVKDQGYDLR-FALEPKPNEPRGDILLPTVGHA 196 (384)
T ss_pred EEEEe--eCCC------CccCc----ccCCHHHHHHHHHHHHHHHHHHHHhcCCCcE-EEEccCCCCCCCCeeeCCHHHH
Confidence 23332 2221 12222 245667777777766665554 34 65 6778764 34444
Q ss_pred HHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeC
Q psy15811 181 LALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 234 (581)
Q Consensus 181 ~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvN 234 (581)
..+++.+ +.|-.+-++++.......|+++..++..... ...+..|=+|
T Consensus 197 l~li~~l----g~~~~vGv~lD~gH~~m~g~n~~~~i~~~l~--~~kL~HvHln 244 (384)
T PRK12677 197 LAFIATL----EHPEMVGLNPEVGHEQMAGLNFTHGIAQALW--AGKLFHIDLN 244 (384)
T ss_pred HHHHHHh----CCCccEEEeeechHHHhcCCCHHHHHHHHHh--CCcEEEEEec
Confidence 4444433 3343345566654445678887777755432 2334444444
No 141
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=80.41 E-value=66 Score=32.78 Aligned_cols=154 Identities=15% Similarity=0.142 Sum_probs=84.7
Q ss_pred HHHHHHHHHhCCCCEEEecccCC-----------------------HHHHHHHHHHHH-hcCCCeEEEEEEEcCCCcCCC
Q psy15811 410 HRPNVEALVRAGVDYLALETIPA-----------------------EKEALALVKLLR-EFPGQKAWLSFSCKDDTHTSH 465 (581)
Q Consensus 410 ~~~~~~~l~~~gvD~i~~ET~p~-----------------------~~Ea~a~~~~~~-~~~~~pv~iSft~~~~~~l~~ 465 (581)
..+.++.|.+.|||+|=+- +|- +.+....++.+| +..++|++ -|+.-+ .-...
T Consensus 28 ~~~~~~~l~~~Gad~iElG-iPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v-lm~Y~N-~i~~~ 104 (258)
T PRK13111 28 SLEIIKALVEAGADIIELG-IPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV-LMTYYN-PIFQY 104 (258)
T ss_pred HHHHHHHHHHCCCCEEEEC-CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEeccc-HHhhc
Confidence 3467888888999998433 221 223344455555 33578864 555432 11222
Q ss_pred CCcHHHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCC-------------CcccccccccC
Q psy15811 466 GELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGG-------------VWDSVHMKWLD 532 (581)
Q Consensus 466 G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~-------------~~~~~~~~~~~ 532 (581)
.++..++.+ ...+++++-|+=..++....+++.++..+-..-.++-||... .|-.+..+..+
T Consensus 105 --G~e~f~~~~---~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG 179 (258)
T PRK13111 105 --GVERFAADA---AEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTG 179 (258)
T ss_pred --CHHHHHHHH---HHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 345566666 345888888888888888888888887752222447777631 22111011111
Q ss_pred C--cCH---HHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHHHHh
Q psy15811 533 T--EDE---YSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMID 573 (581)
Q Consensus 533 ~--~~~---~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~~l~ 573 (581)
. ..+ .++.+.++++.+ -.-++|+ +=.+|+|++++.+..+
T Consensus 180 ~~~~~~~~~~~~i~~vk~~~~-~pv~vGf-GI~~~e~v~~~~~~AD 223 (258)
T PRK13111 180 ARSADAADLAELVARLKAHTD-LPVAVGF-GISTPEQAAAIAAVAD 223 (258)
T ss_pred cccCCCccHHHHHHHHHhcCC-CcEEEEc-ccCCHHHHHHHHHhCC
Confidence 1 112 334455555432 2344555 3348999999887543
No 142
>KOG2335|consensus
Probab=80.32 E-value=2.4 Score=44.72 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=26.6
Q ss_pred CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhh
Q psy15811 192 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSH 240 (581)
Q Consensus 192 ~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~ 240 (581)
+.|.+|+|..++ -+.+.+|++-+ ..-.|+|++||++|..
T Consensus 73 D~PLIvQf~~nd------p~~ll~Aa~lv----~~y~D~idlNcGCPq~ 111 (358)
T KOG2335|consen 73 DRPLIVQFGGND------PENLLKAARLV----QPYCDGIDLNCGCPQK 111 (358)
T ss_pred CCceEEEEcCCC------HHHHHHHHHHh----hhhcCcccccCCCCHH
Confidence 699999996653 23344554433 2456999999998854
No 143
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=80.29 E-value=25 Score=37.89 Aligned_cols=104 Identities=14% Similarity=0.200 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCc--EEEEEEEcCCCcCCCCCCHHHHHHHHHhhC
Q psy15811 148 ADLIAWHRPNVEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQK--AWLSFSCKDDTHTSHGELISSAVTSCLLAN 224 (581)
Q Consensus 148 ~~~~~~~~~q~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~p--v~isft~~~~g~l~~G~~~~~~~~~~~~~~ 224 (581)
+++.+-|- +-..+.|+|+| +|-.++|...++-+++++|+. +.- ..+|.|..+-. +++-.+..+.+..
T Consensus 97 DDvVe~Fv---~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~-G~h~q~~i~YT~sPvH------t~e~yv~~akel~ 166 (472)
T COG5016 97 DDVVEKFV---EKAAENGIDVFRIFDALNDVRNLKTAIKAAKKH-GAHVQGTISYTTSPVH------TLEYYVELAKELL 166 (472)
T ss_pred hHHHHHHH---HHHHhcCCcEEEechhccchhHHHHHHHHHHhc-CceeEEEEEeccCCcc------cHHHHHHHHHHHH
Confidence 55655554 44568999998 899999999999999999987 443 44555555533 3343333333344
Q ss_pred CCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 225 PDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 225 ~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
..++|.|-+-=. .|....++++.+++. .++|+-+.-.
T Consensus 167 ~~g~DSIciKDmaGlltP~~ayelVk~iK~~-~~~pv~lHtH 207 (472)
T COG5016 167 EMGVDSICIKDMAGLLTPYEAYELVKAIKKE-LPVPVELHTH 207 (472)
T ss_pred HcCCCEEEeecccccCChHHHHHHHHHHHHh-cCCeeEEecc
Confidence 688898877662 499999999999986 6677665533
No 144
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=79.98 E-value=17 Score=37.36 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhCCCCEEEec-cc-----CCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhh
Q psy15811 408 AWHRPNVEALVRAGVDYLALE-TI-----PAEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 479 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~E-T~-----p~~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~ 479 (581)
+.++..++.+.+.|||.|++= |. -+.+|=+.+++.+.+. ..+||+++.. ..+..++++..+..
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~s~~~~i~~a~~a 89 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG---------SNATEEAISLTKFA 89 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC---------CccHHHHHHHHHHH
Confidence 344567777788999998763 32 2367777777766643 2479998763 34567777776555
Q ss_pred CCCCceEEEECC---C--CCccchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 480 NPDQIQAIGVNC---V--RPSHVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 480 ~~~~~~~iGiNC---~--~p~~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
...+++++-+-= . +++.+....+.+.... +.|+++|-|-
T Consensus 90 ~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~-~~pi~lYn~P 133 (285)
T TIGR00674 90 EDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV-DLPIILYNVP 133 (285)
T ss_pred HHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEECc
Confidence 667778554432 1 1233445556666655 6999999764
No 145
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=79.95 E-value=16 Score=37.06 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=62.9
Q ss_pred HHHHHHHhCC-CCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEEC
Q psy15811 412 PNVEALVRAG-VDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 490 (581)
Q Consensus 412 ~~~~~l~~~g-vD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiN 490 (581)
+..+.+.+.+ +|+|=+|-.........++..+++ .+.++++|+. +-..+++-+.+.+.++.+. ..+++.+=+-
T Consensus 99 ~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~-~~~kvI~S~H--~f~~tP~~~~l~~~~~~~~---~~gaDivKia 172 (253)
T PRK02412 99 ALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHE-HGVKVVLSYH--DFEKTPPKEEIVERLRKME---SLGADIVKIA 172 (253)
T ss_pred HHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHH-cCCEEEEeeC--CCCCCcCHHHHHHHHHHHH---HhCCCEEEEE
Confidence 3344455667 899999965554555566666665 5889999984 3344454444666666663 3345555555
Q ss_pred C--CCCccchHHHHHHHhh---CCCCeEEEeeCC
Q psy15811 491 C--VRPSHVSTLVRCIKQS---HPTVQTIVYPNK 519 (581)
Q Consensus 491 C--~~p~~~~~~l~~l~~~---~~~~pl~~ypNa 519 (581)
+ .++.++..+++..... ..+.|++.+.-+
T Consensus 173 ~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG 206 (253)
T PRK02412 173 VMPQSEQDVLTLLNATREMKELYADQPLITMSMG 206 (253)
T ss_pred ecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 5 4666666776554332 135798888743
No 146
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=79.82 E-value=72 Score=33.15 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCceEEe--ccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15811 349 WHRPNVEALVRAGVDYLALIKPSISSQTAA--SIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLA 426 (581)
Q Consensus 349 l~~~av~lA~~A~~~~~~~~~~~~~v~Vag--siGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~ 426 (581)
+++++++..++... ...|.. ++-||-++=+.|--+.+. .+..++..+.+.+++-...++|+|+|.
T Consensus 102 ivqravr~ik~~~p----------~l~iitDvcLceyT~HGHcGil~~~~---~V~ND~Tle~l~k~Avs~AeAGAdivA 168 (330)
T COG0113 102 IVQRAVRAIKEAFP----------ELVVITDVCLCEYTDHGHCGILDDGG---YVDNDETLEILAKQAVSQAEAGADIVA 168 (330)
T ss_pred hHHHHHHHHHHhCC----------CeEEEeeecccCCcCCCccccccCCC---eecchHHHHHHHHHHHHHHHcCCCeec
Confidence 55666665555421 234433 456765543333222111 356788888999999889999999998
Q ss_pred ecccCCHHHHHHHHHHHHh--cCCCeEEEEEEEc----------C----C-------CcCCCCCcHHHHHHHHHhhCCCC
Q psy15811 427 LETIPAEKEALALVKLLRE--FPGQKAWLSFSCK----------D----D-------THTSHGELISSAVTSCLLANPDQ 483 (581)
Q Consensus 427 ~ET~p~~~Ea~a~~~~~~~--~~~~pv~iSft~~----------~----~-------~~l~~G~~~~~~~~~l~~~~~~~ 483 (581)
=-.|-+- ...++.+++-+ +.++|++ |.+.+ + . ..=+|--.-.++++.+.....-+
T Consensus 169 PSdMMDG-rV~aIR~aLd~ag~~~v~IM-sYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EG 246 (330)
T COG0113 169 PSDMMDG-RVGAIREALDEAGFIDVPIM-SYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEG 246 (330)
T ss_pred ccccccc-hHHHHHHHHHHcCCCcceee-ehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcC
Confidence 4443331 22344455543 3455544 55443 0 0 00122222345555442222345
Q ss_pred ceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCC---cccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 484 IQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGV---WDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 484 ~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~---~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
++.|.|.=..| .+.+++.++... +.|+.+|--+|+- .-....+|.+. ..-+.+....+..+|+.+|
T Consensus 247 AD~lMVKPal~--YLDIi~~vk~~~-~lP~~AYqVSGEYaMikAAa~nGwide--~~~vlEsL~~~kRAGAd~I 315 (330)
T COG0113 247 ADILMVKPALP--YLDIIRRVKEEF-NLPVAAYQVSGEYAMIKAAAQNGWIDE--EKVVLESLTSIKRAGADLI 315 (330)
T ss_pred CcEEEEcCCch--HHHHHHHHHHhc-CCCeEEEecchHHHHHHHHHHcCCcch--HHHHHHHHHHHHhcCCCEE
Confidence 67666654222 345566677766 6999999999951 11122568664 2245566666777777655
No 147
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=79.77 E-value=11 Score=39.65 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=38.4
Q ss_pred CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC----h--------hhHHHHHHHHHhhCCCCceEE
Q psy15811 192 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR----P--------SHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 192 ~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~----p--------~~~~~~l~~l~~~~~~~p~~~ 259 (581)
+.|+++|+... . -+.+.+++..+. ..++++|=+||++ | +.+.++++.++.. .++|+++
T Consensus 99 ~~pvi~si~g~----~--~~~~~~~a~~~~---~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~v 168 (325)
T cd04739 99 SIPVIASLNGV----S--AGGWVDYARQIE---EAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAV 168 (325)
T ss_pred CCeEEEEeCCC----C--HHHHHHHHHHHH---hcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEE
Confidence 78999997321 1 122344554443 4578999999964 2 2245777777775 6789988
Q ss_pred ec
Q psy15811 260 YP 261 (581)
Q Consensus 260 ~p 261 (581)
+.
T Consensus 169 Kl 170 (325)
T cd04739 169 KL 170 (325)
T ss_pred Ec
Confidence 84
No 148
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=79.74 E-value=20 Score=37.00 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhCCCCEEEec-cc-----CCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhh
Q psy15811 408 AWHRPNVEALVRAGVDYLALE-TI-----PAEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 479 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~E-T~-----p~~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~ 479 (581)
+.++..++.+.+.|||.|++= |. -+..|=+.+++.+.+. ..+|++++.. +.+..++++.++..
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~~~~~~i~~a~~a 92 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG---------SNSTAEAIELTKFA 92 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC---------CchHHHHHHHHHHH
Confidence 345577888888999998743 32 2377777777766643 2478887763 34567777776655
Q ss_pred CCCCceEEEECC--C---CCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 480 NPDQIQAIGVNC--V---RPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 480 ~~~~~~~iGiNC--~---~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
...+++++.+-= . +++.+....+.+.... +.|+++|-+
T Consensus 93 ~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~-~~pv~lYn~ 135 (292)
T PRK03170 93 EKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT-DLPIILYNV 135 (292)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEEC
Confidence 667788655532 1 1233555566776665 699999965
No 149
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=79.71 E-value=15 Score=37.96 Aligned_cols=102 Identities=18% Similarity=0.065 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHh-CCCCEEEecc-cC-----CHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHh
Q psy15811 408 AWHRPNVEALVR-AGVDYLALET-IP-----AEKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 478 (581)
Q Consensus 408 ~~~~~~~~~l~~-~gvD~i~~ET-~p-----~~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~ 478 (581)
+.++..++.+.+ .|||.|++-- .. +..|-+.+++.+.+. ..+|+++... ..+..++++..+.
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg---------~~~t~~ai~~a~~ 94 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG---------SVNTAEAQELAKY 94 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC---------CCCHHHHHHHHHH
Confidence 345567778888 9999986643 21 167777777766643 2478887762 2456777776655
Q ss_pred hCCCCceEEEECC---CCC--ccchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 479 ANPDQIQAIGVNC---VRP--SHVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 479 ~~~~~~~~iGiNC---~~p--~~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
....+++++-+-- ..| +.+....+.+.... +.|+++|-+-
T Consensus 95 a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~-~lPv~iYn~P 139 (293)
T PRK04147 95 ATELGYDAISAVTPFYYPFSFEEICDYYREIIDSA-DNPMIVYNIP 139 (293)
T ss_pred HHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhC-CCCEEEEeCc
Confidence 5566778555443 111 23444556666655 6899999653
No 150
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=79.69 E-value=36 Score=35.22 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=78.7
Q ss_pred HHhccccccccccccccccH-hhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecC-CcCC
Q psy15811 52 IRAGADIIQSSCYQANVDNL-TKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIG-PYGT 129 (581)
Q Consensus 52 l~AGAdiI~TnTf~a~~~~l-~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiG-P~g~ 129 (581)
+++|.+.|... +.+|.... ..++.+.+++.+..+.+++.|++.-.. - ...|.-+.| |+.
T Consensus 89 ~~~g~~~v~i~-~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~------------v-----~~~i~~~~~~~~~- 149 (287)
T PRK05692 89 LAAGADEVAVF-ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVR------------V-----RGYVSCVLGCPYE- 149 (287)
T ss_pred HHcCCCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE------------E-----EEEEEEEecCCCC-
Confidence 46677765544 34443322 236666666666677777777654211 0 112222233 221
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEE-ccC--CHHHHHHHHHHHHhc-CCCcEEEEEEEcCCC
Q psy15811 130 VLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE-TIP--AEKEALALVKLLREF-PGQKAWLSFSCKDDT 205 (581)
Q Consensus 130 ~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E-T~~--~~~E~~aa~~a~~~~-~~~pv~isft~~~~g 205 (581)
+ ..+. +++.+.++.+.+.|+|.|-+- |.. ...++...++.+++. +++| ++|-+=++
T Consensus 150 ---------~----~~~~----~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~--i~~H~Hn~- 209 (287)
T PRK05692 150 ---------G----EVPP----EAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAER--LAGHFHDT- 209 (287)
T ss_pred ---------C----CCCH----HHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCe--EEEEecCC-
Confidence 1 2333 566777788888999998665 544 677888888888853 3344 46665543
Q ss_pred cCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 206 HTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 206 ~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
.|..+..++.++. .|++.|
T Consensus 210 ---~Gla~AN~laA~~----aG~~~i 228 (287)
T PRK05692 210 ---YGQALANIYASLE----EGITVF 228 (287)
T ss_pred ---CCcHHHHHHHHHH----hCCCEE
Confidence 5777887777663 566554
No 151
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=79.69 E-value=27 Score=40.00 Aligned_cols=106 Identities=10% Similarity=0.130 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCC
Q psy15811 148 ADLIAWHRPNVEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPD 226 (581)
Q Consensus 148 ~~~~~~~~~q~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~ 226 (581)
+++...|- +...+.|+|+| +|-.+.+++.++.+++++|+. +.-+...+++..+ .-.+++..+..+.+....
T Consensus 95 d~vv~~~v---~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~-G~~~~~~i~yt~s----p~~t~e~~~~~ak~l~~~ 166 (596)
T PRK14042 95 DDVVRAFV---KLAVNNGVDVFRVFDALNDARNLKVAIDAIKSH-KKHAQGAICYTTS----PVHTLDNFLELGKKLAEM 166 (596)
T ss_pred hHHHHHHH---HHHHHcCCCEEEEcccCcchHHHHHHHHHHHHc-CCEEEEEEEecCC----CCCCHHHHHHHHHHHHHc
Confidence 34444443 34567899997 788999999999999999986 6666666554421 123444444433333357
Q ss_pred CceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 227 QIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 227 ~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
|++.|.+-=+ .|..+.++++.+++. .++||.+.-.
T Consensus 167 Gad~I~IkDtaG~l~P~~v~~lv~alk~~-~~ipi~~H~H 205 (596)
T PRK14042 167 GCDSIAIKDMAGLLTPTVTVELYAGLKQA-TGLPVHLHSH 205 (596)
T ss_pred CCCEEEeCCcccCCCHHHHHHHHHHHHhh-cCCEEEEEeC
Confidence 8888877653 499999999999985 5678775543
No 152
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=79.63 E-value=35 Score=36.29 Aligned_cols=112 Identities=11% Similarity=0.057 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEecc----------cC--C-------------HHHHHHHHHHHHhcCCCeEEEEEEEc
Q psy15811 404 ADLIAWHRPNVEALVRAGVDYLALET----------IP--A-------------EKEALALVKLLREFPGQKAWLSFSCK 458 (581)
Q Consensus 404 ~~~~~~~~~~~~~l~~~gvD~i~~ET----------~p--~-------------~~Ea~a~~~~~~~~~~~pv~iSft~~ 458 (581)
+++.+.|.+.++.+.++|.|.|=+=- .| + ..-...+++++|+..+.++.+.+-+.
T Consensus 133 ~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~ 212 (353)
T cd02930 133 EQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLS 212 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEec
Confidence 55677888888888899999986533 12 1 35556777777765455444444333
Q ss_pred CCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-C--CCc----------cchHHHHHHHhhCCCCeEEEe
Q psy15811 459 DDTHTSHGELISSAVTSCLLANPDQIQAIGVNC-V--RPS----------HVSTLVRCIKQSHPTVQTIVY 516 (581)
Q Consensus 459 ~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC-~--~p~----------~~~~~l~~l~~~~~~~pl~~y 516 (581)
.......|.+++++++.+..+...+++.|-|-. . .+. ......+++++.. ++|+++-
T Consensus 213 ~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~ 282 (353)
T cd02930 213 MLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV-DIPVIAS 282 (353)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC-CCCEEEc
Confidence 222334577888777766555556677766633 1 111 1234456777766 6887763
No 153
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=78.91 E-value=93 Score=32.97 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=61.8
Q ss_pred HHHHHHCCCcEEEEEc-cCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC
Q psy15811 158 VEALVRAGVDYLALET-IPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV 236 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET-~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~ 236 (581)
++...+.|+|.+-+-| ....+.++..++.+|+. +..+.+++... +..+++..+..+......+++.|.+-=+
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~-G~~v~~~l~~a------~~~~~e~l~~~a~~~~~~Ga~~i~i~DT 166 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLAREL-GMDTVGFLMMS------HMAPPEKLAEQAKLMESYGAQCVYVVDS 166 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHC-CCeEEEEEEec------cCCCHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 5666788999876554 44555666677777775 67666655432 2345555555444334577887766544
Q ss_pred ----ChhhHHHHHHHHHhhC-CCCceEEe
Q psy15811 237 ----RPSHVSTLVRCIKQSH-PTVQTIVY 260 (581)
Q Consensus 237 ----~p~~~~~~l~~l~~~~-~~~p~~~~ 260 (581)
.|+.+...++.++... +++||.+.
T Consensus 167 ~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 167 AGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 4999999999998752 35666654
No 154
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=78.84 E-value=87 Score=32.68 Aligned_cols=227 Identities=14% Similarity=0.157 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEE
Q psy15811 41 PEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIET 120 (581)
Q Consensus 41 Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~V 120 (581)
.+.+.+.-++-++.|-.-|.- |+....+ ...|-....-.-+..+|++..|+... +..|
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~L--Fgv~~~K-d~~gs~A~~~~g~v~~air~iK~~~p-------------------~l~v 107 (314)
T cd00384 50 VDSLVEEAEELADLGIRAVIL--FGIPEHK-DEIGSEAYDPDGIVQRAIRAIKEAVP-------------------ELVV 107 (314)
T ss_pred HHHHHHHHHHHHHCCCCEEEE--ECCCCCC-CCCcccccCCCChHHHHHHHHHHhCC-------------------CcEE
Confidence 355666667788888874443 4442111 11222111122478888888877653 3344
Q ss_pred Ee--ecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc--CCCcEE
Q psy15811 121 AA--SIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF--PGQKAW 196 (581)
Q Consensus 121 ag--siGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~--~~~pv~ 196 (581)
.. ++-||...=+.|--- .+.++.++-.+...+|+-..+++|+|++.==-|-|- .+.++.+++.+. .+.|++
T Consensus 108 i~DvcLc~YT~hGHcGil~----~~~idND~Tl~~L~k~Als~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im 182 (314)
T cd00384 108 ITDVCLCEYTDHGHCGILK----DDYVDNDATLELLAKIAVSHAEAGADIVAPSDMMDG-RVAAIREALDEAGFSDVPIM 182 (314)
T ss_pred EEeeeccCCCCCCcceecc----CCcCccHHHHHHHHHHHHHHHHcCCCeeeccccccc-HHHHHHHHHHHCCCCCCcee
Confidence 44 456776654443211 135788999999999999999999999986666555 566777777653 355544
Q ss_pred EEEEEc---------------------CCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCC
Q psy15811 197 LSFSCK---------------------DDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTV 255 (581)
Q Consensus 197 isft~~---------------------~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~ 255 (581)
|-+.+ ...+-++-..-.+|+..+......|+|.+.|-=+.| -+.+++.++.. .++
T Consensus 183 -sYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~-~~~ 258 (314)
T cd00384 183 -SYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALA--YLDIIRDVRER-FDL 258 (314)
T ss_pred -ecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHh-cCC
Confidence 43221 111233445556677665444468899999987655 46788888886 789
Q ss_pred ceEEecCCC-ccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc
Q psy15811 256 QTIVYPNKG-VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA 317 (581)
Q Consensus 256 p~~~~pnag-~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn 317 (581)
|+.+|--+| .-++- .. .. .+ | ++....+.+.+..|-+| +|.|.
T Consensus 259 PvaaYqVSGEYaMik--------aA--a~--~G--~-----id~~~~~~Esl~~~kRAGAd~IiTY 305 (314)
T cd00384 259 PVAAYNVSGEYAMIK--------AA--AK--NG--W-----IDEERVVLESLTSIKRAGADLIITY 305 (314)
T ss_pred CEEEEEccHHHHHHH--------HH--HH--cC--C-----ccHHHHHHHHHHHHHhcCCCEEEee
Confidence 999996666 21111 10 00 11 3 56667788888999999 66665
No 155
>PLN02591 tryptophan synthase
Probab=78.73 E-value=49 Score=33.55 Aligned_cols=156 Identities=9% Similarity=0.012 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhCCCCEEEec-ccCC---------------------HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCC
Q psy15811 409 WHRPNVEALVRAGVDYLALE-TIPA---------------------EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHG 466 (581)
Q Consensus 409 ~~~~~~~~l~~~gvD~i~~E-T~p~---------------------~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G 466 (581)
...+.++.|.++|||+|=+- =+++ +......++.+|+..++|++ -|+.-+. -...
T Consensus 17 ~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i-lm~Y~N~-i~~~- 93 (250)
T PLN02591 17 TTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV-LFTYYNP-ILKR- 93 (250)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE-EEecccH-HHHh-
Confidence 34577888889999998332 1111 12333344444444567854 5554321 1122
Q ss_pred CcHHHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCC-------------CcccccccccCC
Q psy15811 467 ELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGG-------------VWDSVHMKWLDT 533 (581)
Q Consensus 467 ~~~~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~-------------~~~~~~~~~~~~ 533 (581)
.+++.++.+ ...+++++-|.=..++......+..+..+-..-..+-|+..+ .|-....+-.+.
T Consensus 94 -G~~~F~~~~---~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~ 169 (250)
T PLN02591 94 -GIDKFMATI---KEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGA 169 (250)
T ss_pred -HHHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCC
Confidence 355566666 355788888888888888888888877652222334477642 232111111111
Q ss_pred --cCHHHHHHHHHHHHH-cCCcEEeecCCCchHHHHHHHHH
Q psy15811 534 --EDEYSILHYVPQWLE-EGVNIIGGCCEVTSYEIQQMRIM 571 (581)
Q Consensus 534 --~~~~~~~~~~~~w~~-~G~~iiGGCCGt~P~hI~al~~~ 571 (581)
..+..+.+++++-.+ .++.++=|=-=.+|+|++++.+.
T Consensus 170 ~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~ 210 (250)
T PLN02591 170 RASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGW 210 (250)
T ss_pred CcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhc
Confidence 123444444444443 24555445545669999988765
No 156
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=78.35 E-value=15 Score=34.42 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHH-----HHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCC
Q psy15811 408 AWHRPNVEALVRAGVDYLALETIPAEKEAL-----ALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPD 482 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~-----a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~ 482 (581)
+.+.+.++.+.+.|+|++.+++...-..-. ..+..+++..+.|+++++.+.+... .+...+..+ ...
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~---~~~ 83 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAA-----AVDIAAAAA---RAA 83 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchh-----hhhHHHHHH---HHc
Confidence 455677888888999999988765421111 1233444346899999997754322 111112333 344
Q ss_pred CceEEEECCCCCc---cchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 483 QIQAIGVNCVRPS---HVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 483 ~~~~iGiNC~~p~---~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
++++|-+|+..+. .....++.++...++.|+++.-+.
T Consensus 84 g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 84 GADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred CCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 6678888886543 355666777665334777766654
No 157
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=78.21 E-value=87 Score=32.26 Aligned_cols=199 Identities=19% Similarity=0.169 Sum_probs=108.5
Q ss_pred HHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCCh
Q psy15811 159 EALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRP 238 (581)
Q Consensus 159 ~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p 238 (581)
+.-.+.|--+..|- +.+++-++++++++++. +.|++++++-..-. . ++.
T Consensus 6 ~~A~~~~yaV~AfN-~~n~e~~~avi~AAe~~-~sPvIi~~~~~~~~-------------~----------------~~~ 54 (276)
T cd00947 6 KKAREGGYAVGAFN-INNLETLKAILEAAEET-RSPVILQISEGAIK-------------Y----------------AGL 54 (276)
T ss_pred HHHHHCCceEEEEe-eCCHHHHHHHHHHHHHh-CCCEEEEcCcchhh-------------h----------------CCH
Confidence 33344555444444 45788999999999986 89999987432100 0 013
Q ss_pred hhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHHHHhhcC
Q psy15811 239 SHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAA 318 (581)
Q Consensus 239 ~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~aiI~Tna 318 (581)
+.+.+.++.+.+. .++|+.+..+-+ .++|.|.+. +++
T Consensus 55 ~~~~~~~~~~a~~-~~VPV~lHLDH~--------------------------------~~~~~i~~a----i~~------ 91 (276)
T cd00947 55 ELLVAMVKAAAER-ASVPVALHLDHG--------------------------------SSFELIKRA----IRA------ 91 (276)
T ss_pred HHHHHHHHHHHHH-CCCCEEEECCCC--------------------------------CCHHHHHHH----HHh------
Confidence 4455666666664 678887763222 244555332 232
Q ss_pred CcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCC--CCCCCC
Q psy15811 319 SIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDG--SEYSGH 396 (581)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g--~eY~g~ 396 (581)
+|.+...|+|. ++.++..++.+..+++|+.. .+.|=+-+|-.|.. .++ ++ ..-
T Consensus 92 ---GftSVMiD~S~--------l~~eeNi~~t~~vv~~ah~~------------gv~VEaElG~i~g~-e~~~~~~-~~~ 146 (276)
T cd00947 92 ---GFSSVMIDGSH--------LPFEENVAKTKEVVELAHAY------------GVSVEAELGRIGGE-EDGVVGD-EGL 146 (276)
T ss_pred ---CCCEEEeCCCC--------CCHHHHHHHHHHHHHHHHHc------------CCeEEEEEeeecCc-cCCcccc-ccc
Confidence 23334445453 34555556677777777664 25565555555411 111 11 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec--cc--------CCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCC
Q psy15811 397 YVDSMTEADLIAWHRPNVEALVRAGVDYLALE--TI--------PAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHG 466 (581)
Q Consensus 397 y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~E--T~--------p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G 466 (581)
| +++++..+|.++ .|||.|.+- |. |.+ +. ..++.+++..++|..+|= .+|
T Consensus 147 ~---T~pe~a~~Fv~~-------TgvD~LAvsiGt~HG~Y~~~~p~L-~~-~~L~~i~~~~~vPLVlHG--------gSG 206 (276)
T cd00947 147 L---TDPEEAEEFVEE-------TGVDALAVAIGTSHGAYKGGEPKL-DF-DRLKEIAERVNVPLVLHG--------GSG 206 (276)
T ss_pred C---CCHHHHHHHHHH-------HCCCEEEeccCccccccCCCCCcc-CH-HHHHHHHHHhCCCEEEeC--------CCC
Confidence 2 466666666554 589998653 33 221 11 233444443578887664 357
Q ss_pred CcHHHHHHHH
Q psy15811 467 ELISSAVTSC 476 (581)
Q Consensus 467 ~~~~~~~~~l 476 (581)
.+-++.-+.+
T Consensus 207 ~~~e~~~~ai 216 (276)
T cd00947 207 IPDEQIRKAI 216 (276)
T ss_pred CCHHHHHHHH
Confidence 7777665554
No 158
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=77.94 E-value=46 Score=34.17 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=60.8
Q ss_pred HHHHHHHhCCCCEEEecccCCH---------------HHHHHHHHHHHhcCCCeEEE----EEEEcCCCcCCCCCcHHHH
Q psy15811 412 PNVEALVRAGVDYLALETIPAE---------------KEALALVKLLREFPGQKAWL----SFSCKDDTHTSHGELISSA 472 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~---------------~Ea~a~~~~~~~~~~~pv~i----Sft~~~~~~l~~G~~~~~~ 472 (581)
.-++...+.|+|.|-+-.-.+- ..++.+++.+++ .++.+.+ +|.|.+.++. +-+.+.+.
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~-~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~ 154 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA-AGLRVRGYVSTAFGCPYEGEV-PPERVAEV 154 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEeEecCCCCCCC-CHHHHHHH
Confidence 3466667789998766544431 334445556665 4665544 3445554443 22233444
Q ss_pred HHHHHhhCCCCceEEEECC----CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 473 VTSCLLANPDQIQAIGVNC----VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 473 ~~~l~~~~~~~~~~iGiNC----~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
++.+ ...+++.|.+-- ..|..+..+++.++...+++|+.+.-.
T Consensus 155 ~~~~---~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~H 201 (274)
T cd07938 155 AERL---LDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFH 201 (274)
T ss_pred HHHH---HHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 4444 345677666655 368889999999987654577776654
No 159
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=77.81 E-value=22 Score=36.83 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEeccc-C-----CHHHHHHHHHHHHh-c-CCCeEEEEEEEcCCCcCCCCCcHHH
Q psy15811 400 SMTEADLIAWHRPNVEALVRAGVDYLALETI-P-----AEKEALALVKLLRE-F-PGQKAWLSFSCKDDTHTSHGELISS 471 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~-p-----~~~Ea~a~~~~~~~-~-~~~pv~iSft~~~~~~l~~G~~~~~ 471 (581)
.++++.+. ..++.+.+.|||.|++=-. . +..|=+.+++.+.+ . ..+||+++.. +.+..+
T Consensus 17 ~iD~~~l~----~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~---------~~~t~~ 83 (294)
T TIGR02313 17 DIDEEALR----ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG---------ALNHDE 83 (294)
T ss_pred CcCHHHHH----HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC---------cchHHH
Confidence 36665544 6677777899999865322 1 16676777765553 2 3479987773 345667
Q ss_pred HHHHHHhhCCCCceEEEECCCCC-------ccchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 472 AVTSCLLANPDQIQAIGVNCVRP-------SHVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 472 ~~~~l~~~~~~~~~~iGiNC~~p-------~~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
+++..+.....+++++. ...| +.+....+.+....++.|+++|-+-
T Consensus 84 ai~~a~~A~~~Gad~v~--v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P 136 (294)
T TIGR02313 84 TLELTKFAEEAGADAAM--VIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIP 136 (294)
T ss_pred HHHHHHHHHHcCCCEEE--EcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 77766544556777443 3333 2344445666665536999999653
No 160
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=77.79 E-value=14 Score=38.81 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEc-----------------CCCcCCCCCcHHH
Q psy15811 409 WHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCK-----------------DDTHTSHGELISS 471 (581)
Q Consensus 409 ~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~-----------------~~~~l~~G~~~~~ 471 (581)
.--.|+..|.++|+|++-+ |+|+.+++.++-+.-++ .++|++.-|.|. +.|..-...-+.+
T Consensus 37 aTv~QI~~L~~aG~dIVRv-tv~~~e~A~A~~~Ik~~-~~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~ 114 (361)
T COG0821 37 ATVAQIKALERAGCDIVRV-TVPDMEAAEALKEIKQR-LNVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVRE 114 (361)
T ss_pred HHHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHh-CCCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHH
Confidence 3458999999999999874 78988777666555555 699999887775 2344445566888
Q ss_pred HHHHHHhhCCCCceEEEECCCCC
Q psy15811 472 AVTSCLLANPDQIQAIGVNCVRP 494 (581)
Q Consensus 472 ~~~~l~~~~~~~~~~iGiNC~~p 494 (581)
+++... ...-+.=||+|-.+-
T Consensus 115 vVe~Ak--~~g~piRIGVN~GSL 135 (361)
T COG0821 115 VVEAAK--DKGIPIRIGVNAGSL 135 (361)
T ss_pred HHHHHH--HcCCCEEEecccCch
Confidence 888874 344567899999543
No 161
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=77.74 E-value=25 Score=37.07 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=59.8
Q ss_pred HHHHHHHCCCcEEEEEccCCH-------------HH--------------HHHHHHHHHhc--CCCcEEEEEEEcCCCcC
Q psy15811 157 NVEALVRAGVDYLALETIPAE-------------KE--------------ALALVKLLREF--PGQKAWLSFSCKDDTHT 207 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~-------------~E--------------~~aa~~a~~~~--~~~pv~isft~~~~g~l 207 (581)
.++.+.+.|+.++..=|++.- .| +...++-+++. .+.|+++|+...+..
T Consensus 64 ~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~-- 141 (327)
T cd04738 64 AIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDT-- 141 (327)
T ss_pred HHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCC--
Confidence 345556789999888877642 01 12233334322 368999999665321
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEEeCCCCh-----------hhHHHHHHHHHhhCC-----CCceEEec
Q psy15811 208 SHGELISSAVTSCLLANPDQIQAIGVNCVRP-----------SHVSTLVRCIKQSHP-----TVQTIVYP 261 (581)
Q Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p-----------~~~~~~l~~l~~~~~-----~~p~~~~p 261 (581)
..-..+++.+..+.+.. ..++++-+|+++| +.+.++++.+++. . ++|++++.
T Consensus 142 ~~~~~~~d~~~~~~~~~-~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~-~~~~~~~~Pv~vKl 209 (327)
T cd04738 142 PLEDAVEDYVIGVRKLG-PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEE-RNKLGKKVPLLVKI 209 (327)
T ss_pred cccccHHHHHHHHHHHH-hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHH-HhhcccCCCeEEEe
Confidence 11233455544433321 2479999999766 4577888888764 3 37777774
No 162
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=77.68 E-value=1.4e+02 Score=34.26 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=64.3
Q ss_pred HHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC
Q psy15811 158 VEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV 236 (581)
Q Consensus 158 ~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~ 236 (581)
++..++.|+|.| +|-.+++...++.+++.+|+. +..+.+++++....+ .+++..+..+.++...|++.|.+-=+
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~----~~~~~~~~~~~~~~~~Gad~I~i~Dt 171 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKH-GAHAQGTISYTTSPV----HTLETYLDLAEELLEMGVDSICIKDM 171 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHc-CCEEEEEEEeccCCC----CCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 344557899986 556778899999999999986 665555444332111 34444433333333578887766443
Q ss_pred ----ChhhHHHHHHHHHhhCCCCceEEec
Q psy15811 237 ----RPSHVSTLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 237 ----~p~~~~~~l~~l~~~~~~~p~~~~p 261 (581)
.|..+..+++.+++. .++||.+.-
T Consensus 172 ~G~~~P~~v~~lv~~lk~~-~~~pi~~H~ 199 (582)
T TIGR01108 172 AGILTPKAAYELVSALKKR-FGLPVHLHS 199 (582)
T ss_pred CCCcCHHHHHHHHHHHHHh-CCCceEEEe
Confidence 499999999999985 457776543
No 163
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=77.62 E-value=67 Score=31.80 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=68.7
Q ss_pred HHHHHHHhCCCCEEEecccC-C------HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCC---CcHHHHHHHHHhhCC
Q psy15811 412 PNVEALVRAGVDYLALETIP-A------EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHG---ELISSAVTSCLLANP 481 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p-~------~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G---~~~~~~~~~l~~~~~ 481 (581)
.+++...+.|+|.+.+.... . ..+++.+.+..++ .++|+++.... +..++... +.+..+++.. ..
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~-~g~~~iie~~~-~g~~~~~~~~~~~i~~~~~~a---~~ 154 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHK-YGLPLIAWMYP-RGPAVKNEKDPDLIAYAARIG---AE 154 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHH-cCCCEEEEEec-cCCcccCccCHHHHHHHHHHH---HH
Confidence 45667778899877554322 2 2355555555555 58999986533 22233222 2333333333 34
Q ss_pred CCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCc
Q psy15811 482 DQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVN 552 (581)
Q Consensus 482 ~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ 552 (581)
.+++.|+++... =...++++.... ++|+++- .|.. ..+++++.+.+++.++.|+.
T Consensus 155 ~GaD~Ik~~~~~---~~~~~~~i~~~~-~~pvv~~--GG~~----------~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 155 LGADIVKTKYTG---DAESFKEVVEGC-PVPVVIA--GGPK----------KDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred HCCCEEEecCCC---CHHHHHHHHhcC-CCCEEEe--CCCC----------CCCHHHHHHHHHHHHHcCCc
Confidence 588999998632 134556666554 5786444 2211 12356777888888888876
No 164
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=77.49 E-value=60 Score=31.70 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=40.6
Q ss_pred HHHHHHHCCCcEEEEE-ccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeC
Q psy15811 157 NVEALVRAGVDYLALE-TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 234 (581)
Q Consensus 157 q~~~l~~~gvD~l~~E-T~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvN 234 (581)
|++.+.+.|+|.+++= +....++++..++..+.. ++-+++.+. +.+++- .+. ..+++.+|+|
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~-g~~~~v~v~-----------~~~e~~-~~~---~~g~~~i~~t 148 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKELYELAREL-GMEVLVEVH-----------DEEELE-RAL---ALGAKIIGIN 148 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHc-CCeEEEEEC-----------CHHHHH-HHH---HcCCCEEEEe
Confidence 6888999999999753 333446777777777665 665544331 344433 333 3678999988
No 165
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=77.43 E-value=46 Score=35.32 Aligned_cols=92 Identities=18% Similarity=0.219 Sum_probs=58.1
Q ss_pred CCCH---HHHHHHHHHHHHHHHhCCCCEEEecc----------cCC---------------HHHHHHHHHHHHhcCCCeE
Q psy15811 400 SMTE---ADLIAWHRPNVEALVRAGVDYLALET----------IPA---------------EKEALALVKLLREFPGQKA 451 (581)
Q Consensus 400 ~~~~---~~~~~~~~~~~~~l~~~gvD~i~~ET----------~p~---------------~~Ea~a~~~~~~~~~~~pv 451 (581)
.+|. +++.+.|...++.+.++|.|.|=+=. .|. ..=+..+++++|+..+.++
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~ 209 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDF 209 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCC
Confidence 4554 55667788888878889999985544 221 1334467777776556666
Q ss_pred EEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCC-ceEEEECC
Q psy15811 452 WLSFSCKDDTHTSHGELISSAVTSCLLANPDQ-IQAIGVNC 491 (581)
Q Consensus 452 ~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~-~~~iGiNC 491 (581)
.+.+-+........|.++++.+..+..+...+ ++.|-|.+
T Consensus 210 ~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 210 IVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred eEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 66665544444567888888776665445555 67766643
No 166
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=77.05 E-value=34 Score=34.66 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHCC-CcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 153 WHRPNVEALVRAG-VDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 153 ~~~~q~~~l~~~g-vD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
.|.+.++.+++.| +|++=+|--.+-+.....+..+++ .+.++++|+..- ..+++-..+.+.+..+. ..|+|.+
T Consensus 96 ~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~-~~~kvI~S~H~f--~~tP~~~~l~~~~~~~~---~~gaDiv 169 (253)
T PRK02412 96 EYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHE-HGVKVVLSYHDF--EKTPPKEEIVERLRKME---SLGADIV 169 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHH-cCCEEEEeeCCC--CCCcCHHHHHHHHHHHH---HhCCCEE
Confidence 3444556677888 999999965555556666666665 378999998632 12333334555555544 5678888
Q ss_pred EeCCC--ChhhHHHHHHHHHhh---CCCCceEEec
Q psy15811 232 GVNCV--RPSHVSTLVRCIKQS---HPTVQTIVYP 261 (581)
Q Consensus 232 GvNC~--~p~~~~~~l~~l~~~---~~~~p~~~~p 261 (581)
=+-+. .+.+...+++...+. ..+.|++.+.
T Consensus 170 Kia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~ 204 (253)
T PRK02412 170 KIAVMPQSEQDVLTLLNATREMKELYADQPLITMS 204 (253)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 88775 577777776555431 1457877764
No 167
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=77.02 E-value=49 Score=34.23 Aligned_cols=98 Identities=11% Similarity=0.078 Sum_probs=61.8
Q ss_pred HHHHHHHhCCCCEEEecccC--------------CHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHH
Q psy15811 412 PNVEALVRAGVDYLALETIP--------------AEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSC 476 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p--------------~~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l 476 (581)
..++.+.++||..|-+|+.- +..|...=++++++- .+.+++|-- |.+.... ..++++++..
T Consensus 92 ~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiA--RTDa~~~--~g~deAI~Ra 167 (285)
T TIGR02317 92 RTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIA--RTDARAV--EGLDAAIERA 167 (285)
T ss_pred HHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEE--EcCcccc--cCHHHHHHHH
Confidence 46788889999999999842 355666666666642 344555544 3344333 3589999998
Q ss_pred HhhCCCCceEEEECC-CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 477 LLANPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 477 ~~~~~~~~~~iGiNC-~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
+.....++++|-+-+ .+++.+ +.+...- +.|+++-+-
T Consensus 168 ~ay~~AGAD~vfi~g~~~~e~i----~~~~~~i-~~Pl~~n~~ 205 (285)
T TIGR02317 168 KAYVEAGADMIFPEALTSLEEF----RQFAKAV-KVPLLANMT 205 (285)
T ss_pred HHHHHcCCCEEEeCCCCCHHHH----HHHHHhc-CCCEEEEec
Confidence 766678888777766 333444 3444333 468755443
No 168
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=76.95 E-value=26 Score=36.74 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
+.-..|+..|-++|+|++= =|+|+.+.|.+ +..+++..++|++.-|.|+. ++ ++..+ ..+++.+
T Consensus 36 ~aTv~QI~~L~~aG~dIVR-vtv~~~e~A~A-~~~Ik~~~~vPLVaDiHf~~--rl--------a~~~~----~~g~~k~ 99 (361)
T COG0821 36 EATVAQIKALERAGCDIVR-VTVPDMEAAEA-LKEIKQRLNVPLVADIHFDY--RL--------ALEAA----ECGVDKV 99 (361)
T ss_pred HHHHHHHHHHHHcCCCEEE-EecCCHHHHHH-HHHHHHhCCCCEEEEeeccH--HH--------HHHhh----hcCcceE
Confidence 4567899999999999985 48899866655 45555445999999888862 22 33332 3568999
Q ss_pred EeCCC--C-hhhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHH
Q psy15811 232 GVNCV--R-PSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVET 305 (581)
Q Consensus 232 GvNC~--~-p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~v 305 (581)
=+|=. + .+.+.++++..+. .++|+=+=-|.| .+..+|.+.+| .| +||.+.+-
T Consensus 100 RINPGNig~~~~v~~vVe~Ak~--~g~piRIGVN~G------SLek~~~~ky~-----~p---------t~ealveS 154 (361)
T COG0821 100 RINPGNIGFKDRVREVVEAAKD--KGIPIRIGVNAG------SLEKRLLEKYG-----GP---------TPEALVES 154 (361)
T ss_pred EECCcccCcHHHHHHHHHHHHH--cCCCEEEecccC------chhHHHHHHhc-----CC---------CHHHHHHH
Confidence 99986 4 5668888887776 477887777776 33455555533 34 78876553
No 169
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=76.88 E-value=64 Score=32.59 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=45.4
Q ss_pred HHHHHHHCCCcEEEE--EccCCHHHH--HHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEE
Q psy15811 157 NVEALVRAGVDYLAL--ETIPAEKEA--LALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIG 232 (581)
Q Consensus 157 q~~~l~~~gvD~l~~--ET~~~~~E~--~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vG 232 (581)
.++.|.+.|+|++.- |.|.+-.-+ ...++.+++..+.||++ +|.. .+.+++...+ ..|+++|+
T Consensus 136 ~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~------egGI---~tpeda~~Am----elGAdgVl 202 (248)
T cd04728 136 LAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIV------DAGI---GTPSDAAQAM----ELGADAVL 202 (248)
T ss_pred HHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE------eCCC---CCHHHHHHHH----HcCCCEEE
Confidence 356777889999833 433321100 22333444435788886 3434 3455555544 38999999
Q ss_pred eCCC--C---hhhHHHHHHH
Q psy15811 233 VNCV--R---PSHVSTLVRC 247 (581)
Q Consensus 233 vNC~--~---p~~~~~~l~~ 247 (581)
+|-+ . |..|.+.++.
T Consensus 203 V~SAIt~a~dP~~ma~af~~ 222 (248)
T cd04728 203 LNTAIAKAKDPVAMARAFKL 222 (248)
T ss_pred EChHhcCCCCHHHHHHHHHH
Confidence 9984 4 7776655443
No 170
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=76.76 E-value=57 Score=34.52 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhCCCCEEE-ecccCC-----------HHHHHHHHHHHHhcC-CCeEEEEEEEcCCCcCCCCCcHHHHHH
Q psy15811 408 AWHRPNVEALVRAGVDYLA-LETIPA-----------EKEALALVKLLREFP-GQKAWLSFSCKDDTHTSHGELISSAVT 474 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~-~ET~p~-----------~~Ea~a~~~~~~~~~-~~pv~iSft~~~~~~l~~G~~~~~~~~ 474 (581)
+.-...++.+.++|+|+|. ++...+ ..=.+-+++.+++.. +.| +++||.... ..+.
T Consensus 186 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~-ilh~cg~~~----------~~~~ 254 (346)
T PRK00115 186 DATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVP-VILFGKGAG----------ELLE 254 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcCCcH----------HHHH
Confidence 3345566666779999885 555333 122244555665532 344 557765211 1233
Q ss_pred HHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCc--
Q psy15811 475 SCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVN-- 552 (581)
Q Consensus 475 ~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~-- 552 (581)
.+ ...++++++++... . ++..+... +..+.+.-|--+ . -. ..++++..+.+++.++.+..
T Consensus 255 ~~---~~~~~~~is~d~~~-----d-l~~~k~~~-g~~~~i~Gni~p----~--ll--~gt~e~i~~~~~~~i~~~~~~g 316 (346)
T PRK00115 255 AM---AETGADVVGLDWTV-----D-LAEARRRV-GDKKALQGNLDP----A--VL--LAPPEAIEEEVRAILDGGGGPG 316 (346)
T ss_pred HH---HhcCCCEEeeCCCC-----C-HHHHHHHc-CCCeEEEeCCCh----h--Hh--cCCHHHHHHHHHHHHHHhCCCC
Confidence 44 23356777777621 1 22233322 122555666521 1 11 13478899999998875432
Q ss_pred -EE-eecC---CCchHHHHHHHHHHhcc
Q psy15811 553 -II-GGCC---EVTSYEIQQMRIMIDEF 575 (581)
Q Consensus 553 -ii-GGCC---Gt~P~hI~al~~~l~~~ 575 (581)
|+ -||. +|.++.|+++-+.++.+
T Consensus 317 fIl~~Gc~i~~~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 317 HIFNLGHGILPETPPENVKALVEAVHEL 344 (346)
T ss_pred eeeecCCcCCCCcCHHHHHHHHHHHHHh
Confidence 44 3564 78899999999988764
No 171
>PRK08508 biotin synthase; Provisional
Probab=76.73 E-value=60 Score=33.32 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.8
Q ss_pred HHHHHHHHHCCCcEEEE
Q psy15811 155 RPNVEALVRAGVDYLAL 171 (581)
Q Consensus 155 ~~q~~~l~~~gvD~l~~ 171 (581)
+++++.|.++|+|.+-.
T Consensus 102 ~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 102 VEQLKELKKAGIFSYNH 118 (279)
T ss_pred HHHHHHHHHcCCCEEcc
Confidence 56778899999999863
No 172
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=76.59 E-value=81 Score=32.75 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEecc-cC-----CH--------HHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcH
Q psy15811 404 ADLIAWHRPNVEALVRAGVDYLALET-IP-----AE--------KEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELI 469 (581)
Q Consensus 404 ~~~~~~~~~~~~~l~~~gvD~i~~ET-~p-----~~--------~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~ 469 (581)
+.+.+...+.++.+.++|+|+|.+-. .. +. .-.+.+++.++. .+.|+++|.|- +..
T Consensus 164 ~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~-~g~~~~lH~cG-~~~-------- 233 (330)
T cd03465 164 EKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKA-LGGPVIHHNCG-DTA-------- 233 (330)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHH-cCCceEEEECC-Cch--------
Confidence 44555566777778888999875543 21 21 122445555555 37788887742 111
Q ss_pred HHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHc
Q psy15811 470 SSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEE 549 (581)
Q Consensus 470 ~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 549 (581)
..+..+. ..++++ +|.-....+..+ +... +....+.-|-... ......++++..+.+++.++.
T Consensus 234 -~~~~~l~---~~~~d~--~~~d~~~dl~~~----~~~~-g~~~~i~G~id~~------~~l~~gt~eei~~~v~~~l~~ 296 (330)
T cd03465 234 -PILELMA---DLGADV--FSIDVTVDLAEA----KKKV-GDKACLMGNLDPI------DVLLNGSPEEIKEEVKELLEK 296 (330)
T ss_pred -hHHHHHH---HhCCCe--EeecccCCHHHH----HHHh-CCceEEEeCcChH------HhhcCCCHHHHHHHHHHHHHH
Confidence 2233442 223453 333111123222 2221 2234455554221 011234577888888887765
Q ss_pred CC-----cEEeecCC----CchHHHHHHHHHHh
Q psy15811 550 GV-----NIIGGCCE----VTSYEIQQMRIMID 573 (581)
Q Consensus 550 G~-----~iiGGCCG----t~P~hI~al~~~l~ 573 (581)
+. -|++--|| |.++.|+++-+.++
T Consensus 297 ~~~~~~~~il~~gc~i~~~~p~enl~a~v~a~~ 329 (330)
T cd03465 297 LLKGGGGYILSSGCEIPPDTPIENIKAMIDAVR 329 (330)
T ss_pred HhCCCCCEEEeCCCCCCCCCCHHHHHHHHHHHh
Confidence 32 27766565 56788988887765
No 173
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=76.48 E-value=42 Score=38.46 Aligned_cols=97 Identities=10% Similarity=0.122 Sum_probs=66.4
Q ss_pred HHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC---
Q psy15811 416 ALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC--- 491 (581)
Q Consensus 416 ~l~~~gvD~i-~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC--- 491 (581)
...+.|+|+| +|..+.+..-++..++++++ .+.-+..++|+-... .-+=+.+.+.++.+ ...+++.|.|--
T Consensus 104 ~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~-~G~~~~~~i~yt~sp-~~t~e~~~~~ak~l---~~~Gad~I~IkDtaG 178 (596)
T PRK14042 104 LAVNNGVDVFRVFDALNDARNLKVAIDAIKS-HKKHAQGAICYTTSP-VHTLDNFLELGKKL---AEMGCDSIAIKDMAG 178 (596)
T ss_pred HHHHcCCCEEEEcccCcchHHHHHHHHHHHH-cCCEEEEEEEecCCC-CCCHHHHHHHHHHH---HHcCCCEEEeCCccc
Confidence 3456899998 56677778888999999998 588777776553222 11112344444444 455777777766
Q ss_pred -CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 492 -VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 492 -~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
..|..+..+++.++... ++|+.+.-.
T Consensus 179 ~l~P~~v~~lv~alk~~~-~ipi~~H~H 205 (596)
T PRK14042 179 LLTPTVTVELYAGLKQAT-GLPVHLHSH 205 (596)
T ss_pred CCCHHHHHHHHHHHHhhc-CCEEEEEeC
Confidence 36888999999998875 588877654
No 174
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=76.28 E-value=17 Score=36.55 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=61.2
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCC---------cCCCCCcHHHHHHHHHhhCCC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDT---------HTSHGELISSAVTSCLLANPD 482 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~---------~l~~G~~~~~~~~~l~~~~~~ 482 (581)
..++.|.++|++.|-+|... |....++++++ .++||+-+.-..+.. ..++-..++++++..+.....
T Consensus 93 ~~~~~l~~aGa~gv~iED~~---~~~~~i~ai~~-a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~A 168 (240)
T cd06556 93 ELAKTFMRAGAAGVKIEGGE---WHIETLQMLTA-AAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPA 168 (240)
T ss_pred HHHHHHHHcCCcEEEEcCcH---HHHHHHHHHHH-cCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHc
Confidence 44566777999999999974 55556677776 467777666332111 112224577888877666678
Q ss_pred CceEEEECCCCCccchHHHHHHHhhCCCCeEEEe
Q psy15811 483 QIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVY 516 (581)
Q Consensus 483 ~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~y 516 (581)
++++|=+-|..++ ..+++.+.. ++|++..
T Consensus 169 GAd~i~~e~~~~e----~~~~i~~~~-~~P~~~~ 197 (240)
T cd06556 169 GADLIVMECVPVE----LAKQITEAL-AIPLAGI 197 (240)
T ss_pred CCCEEEEcCCCHH----HHHHHHHhC-CCCEEEE
Confidence 8898888886333 334454444 5887764
No 175
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=76.27 E-value=26 Score=35.03 Aligned_cols=91 Identities=14% Similarity=0.199 Sum_probs=50.9
Q ss_pred HHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC-
Q psy15811 159 EALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR- 237 (581)
Q Consensus 159 ~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~- 237 (581)
+.+.+.|-.-|+.+- .++-.+..+..+++. +.|+++|+. |.++++..+.+..... ..+.|=+||++
T Consensus 42 ~~~~~~~~~ef~~~~--~~~~~~~~~~~~~~~-~~p~~vqi~---------g~~~~~~~~aa~~~~~-~~~~ielN~gCP 108 (233)
T cd02911 42 RKLVKRGRKEFLPDD--PLEFIEGEIKALKDS-NVLVGVNVR---------SSSLEPLLNAAALVAK-NAAILEINAHCR 108 (233)
T ss_pred HHHHhcCCccccccc--hHHHHHHHHHHhhcc-CCeEEEEec---------CCCHHHHHHHHHHHhh-cCCEEEEECCCC
Confidence 344455554444333 222333344445553 679999873 3444443333222113 35899999975
Q ss_pred ----------------hhhHHHHHHHHHhhCCCCceEEecCCC
Q psy15811 238 ----------------PSHVSTLVRCIKQSHPTVQTIVYPNKG 264 (581)
Q Consensus 238 ----------------p~~~~~~l~~l~~~~~~~p~~~~pnag 264 (581)
|+.+.++++.++. .+.|++++-..|
T Consensus 109 ~~~v~~~g~G~~Ll~~p~~l~eiv~avr~--~~~pVsvKir~g 149 (233)
T cd02911 109 QPEMVEAGAGEALLKDPERLSEFIKALKE--TGVPVSVKIRAG 149 (233)
T ss_pred cHHHhcCCcchHHcCCHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 4445667777765 478888876554
No 176
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=76.13 E-value=23 Score=34.77 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHCCCcEEEEEccCCH--HHHHHH-HHHHHh-cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCc
Q psy15811 153 WHRPNVEALVRAGVDYLALETIPAE--KEALAL-VKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQI 228 (581)
Q Consensus 153 ~~~~q~~~l~~~gvD~l~~ET~~~~--~E~~aa-~~a~~~-~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~ 228 (581)
.||..++.+ |+|+++=|-+..- ...... ...... ..+.|+++|+.. .++++....+......|.
T Consensus 14 ~fR~l~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g---------~~~~~~~~aa~~~~~aG~ 81 (231)
T cd02801 14 PFRLLCRRY---GADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGG---------SDPETLAEAAKIVEELGA 81 (231)
T ss_pred HHHHHHHHH---CCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcC---------CCHHHHHHHHHHHHhcCC
Confidence 345444433 6999887655432 111111 111111 136999998853 334444333333335789
Q ss_pred eEEEeCCCCh-----------------hhHHHHHHHHHhhCCCCceEEecC
Q psy15811 229 QAIGVNCVRP-----------------SHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 229 ~~vGvNC~~p-----------------~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
++|=+||++| +.+.++++.+++. ...|+++.-+
T Consensus 82 d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~~~v~vk~r 131 (231)
T cd02801 82 DGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VPIPVTVKIR 131 (231)
T ss_pred CEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cCCCEEEEEe
Confidence 9999999754 3456777777764 4467776644
No 177
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=76.09 E-value=60 Score=32.35 Aligned_cols=78 Identities=13% Similarity=0.208 Sum_probs=55.3
Q ss_pred HHHHHHhhCCCCceEEEeCCC-C--hhhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcccCCCCcccc
Q psy15811 216 AVTSCLLANPDQIQAIGVNCV-R--PSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSS 292 (581)
Q Consensus 216 ~~~~~~~~~~~~~~~vGvNC~-~--p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~ 292 (581)
.++.+. ..+.|+|.|-=| + .+.+.++++.+++. .+|++..|...-.+..+. + .-++.+
T Consensus 19 ~~~~~~---~~gtdai~vGGS~~vt~~~~~~~v~~ik~~--~lPvilfp~~~~~i~~~a-----------D---a~l~~s 79 (223)
T TIGR01768 19 IAKAAA---ESGTDAILIGGSQGVTYEKTDTLIEALRRY--GLPIILFPSNPTNVSRDA-----------D---ALFFPS 79 (223)
T ss_pred HHHHHH---hcCCCEEEEcCCCcccHHHHHHHHHHHhcc--CCCEEEeCCCccccCcCC-----------C---EEEEEE
Confidence 444444 477899999887 3 58999999999984 499999997664443321 1 234456
Q ss_pred cccCCChHHHHHHHHHHHHH
Q psy15811 293 VYLTTEPEACVETHRDFIRG 312 (581)
Q Consensus 293 ~~~~~~Pe~v~~vh~~yl~a 312 (581)
.+|..+|+-+-..|.+.+..
T Consensus 80 vlNs~~~~~iig~~~~~~~~ 99 (223)
T TIGR01768 80 VLNSDDPYWIIGAQIEAAPK 99 (223)
T ss_pred eecCCCchHHHhHHHHHHHH
Confidence 67788999888888777665
No 178
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=76.03 E-value=15 Score=37.49 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCH
Q psy15811 145 MTEADLIAWHRPNVEALVRAGVDYLALETIPAE 177 (581)
Q Consensus 145 ~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~ 177 (581)
.+.+++.+.-.+=++.|.++|+|.+++|.+.|.
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~ 53 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFENFFDA 53 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 578999999999999999999999999998664
No 179
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=75.99 E-value=45 Score=33.42 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=62.4
Q ss_pred HHHHHHHHCCCcEEEEEccCC---------------HHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHH
Q psy15811 156 PNVEALVRAGVDYLALETIPA---------------EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSC 220 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~---------------~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~ 220 (581)
+.++.+.+.|+|.+.+=.-.+ .++++.+++.+++. +.++.+++...... ..+++.....+
T Consensus 78 ~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~~~~~~~~~----~~~~~~l~~~~ 152 (265)
T cd03174 78 KGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEA-GLEVEGSLEDAFGC----KTDPEYVLEVA 152 (265)
T ss_pred hhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeecCC----CCCHHHHHHHH
Confidence 346777788999986554433 67788888888875 78877776432110 13444443333
Q ss_pred HhhCCCCceEEEeCC----CChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 221 LLANPDQIQAIGVNC----VRPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 221 ~~~~~~~~~~vGvNC----~~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
......+++.|.+-= ..|+.+.++++.+++...++|+.+.
T Consensus 153 ~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H 196 (265)
T cd03174 153 KALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLH 196 (265)
T ss_pred HHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 222246676665533 3599999999999986333555544
No 180
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=75.93 E-value=71 Score=31.92 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=69.2
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
...+.+.+.|-.-|+.+. ...-.+-.+..+++ .+.|+.+++.-. +-+.+.++++.+ .. ..+.|-+||
T Consensus 39 ~aa~~~~~~~~~ef~~~~--~~~~~~~~~~~~~~-~~~p~~vqi~g~------~~~~~~~aa~~~---~~-~~~~ielN~ 105 (233)
T cd02911 39 EAARKLVKRGRKEFLPDD--PLEFIEGEIKALKD-SNVLVGVNVRSS------SLEPLLNAAALV---AK-NAAILEINA 105 (233)
T ss_pred HHHHHHHhcCCccccccc--hHHHHHHHHHHhhc-cCCeEEEEecCC------CHHHHHHHHHHH---hh-cCCEEEEEC
Confidence 445556555654444443 12223334444554 477988888321 122344444444 22 347888999
Q ss_pred CC-----------------CccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 492 VR-----------------PSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 492 ~~-----------------p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
.- |+.+..+++.++.. ++|+.+.-..| |. .+..+.++...+.|+.+|
T Consensus 106 gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g---------~~-----~~~~~la~~l~~aG~d~i 169 (233)
T cd02911 106 HCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAG---------VD-----VDDEELARLIEKAGADII 169 (233)
T ss_pred CCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCC---------cC-----cCHHHHHHHHHHhCCCEE
Confidence 32 34455667777763 58988877665 21 123344455556777766
Q ss_pred eecCCCc--hHHHHHHHH
Q psy15811 555 GGCCEVT--SYEIQQMRI 570 (581)
Q Consensus 555 GGCCGt~--P~hI~al~~ 570 (581)
-+-++.. +.+++.|++
T Consensus 170 hv~~~~~g~~ad~~~I~~ 187 (233)
T cd02911 170 HVDAMDPGNHADLKKIRD 187 (233)
T ss_pred EECcCCCCCCCcHHHHHH
Confidence 6544432 334444443
No 181
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=75.78 E-value=28 Score=34.51 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=52.3
Q ss_pred HHHHHHHHCCCcEEEEEc-cCCHH------HHHHHHHHHHhcCCCcEEEEEEEcCCCcCC---CCCCHHHHHHHHHhhCC
Q psy15811 156 PNVEALVRAGVDYLALET-IPAEK------EALALVKLLREFPGQKAWLSFSCKDDTHTS---HGELISSAVTSCLLANP 225 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET-~~~~~------E~~aa~~a~~~~~~~pv~isft~~~~g~l~---~G~~~~~~~~~~~~~~~ 225 (581)
.+++..++.|+|.+.+.- +.+.. +++.+.+++++. ++|+++..... +.++. +...+..+++.+. .
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-g~~~iie~~~~-g~~~~~~~~~~~i~~~~~~a~---~ 154 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKY-GLPLIAWMYPR-GPAVKNEKDPDLIAYAARIGA---E 154 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHc-CCCEEEEEecc-CCcccCccCHHHHHHHHHHHH---H
Confidence 356778889999775543 22322 555555555554 89998854332 22221 1223333333333 4
Q ss_pred CCceEEEeCCC-ChhhHHHHHHHHHhhCCCCceEE
Q psy15811 226 DQIQAIGVNCV-RPSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 226 ~~~~~vGvNC~-~p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
.|+|.|+++.+ +++.+ +.+.+. ..+|+.+
T Consensus 155 ~GaD~Ik~~~~~~~~~~----~~i~~~-~~~pvv~ 184 (235)
T cd00958 155 LGADIVKTKYTGDAESF----KEVVEG-CPVPVVI 184 (235)
T ss_pred HCCCEEEecCCCCHHHH----HHHHhc-CCCCEEE
Confidence 79999999976 45444 444443 4566533
No 182
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=75.78 E-value=44 Score=34.12 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=61.0
Q ss_pred HHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC
Q psy15811 158 VEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV 236 (581)
Q Consensus 158 ~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~ 236 (581)
++...+.|+|.+ ++-...++++++.+++.+|+. +..|.+++... .+.+.+..+..+......+++.|.+-=+
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~-G~~v~~~~~~a------~~~~~~~~~~~~~~~~~~g~~~i~l~DT 160 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEK-GYEVFFNLMAI------SGYSDEELLELLELVNEIKPDVFYIVDS 160 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHC-CCeEEEEEEee------cCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 444567899975 444567888899999999876 66666555432 1244444443333323467777766543
Q ss_pred ----ChhhHHHHHHHHHhhCCC--CceEEe
Q psy15811 237 ----RPSHVSTLVRCIKQSHPT--VQTIVY 260 (581)
Q Consensus 237 ----~p~~~~~~l~~l~~~~~~--~p~~~~ 260 (581)
.|+.+..+++.+++. .+ +||.+.
T Consensus 161 ~G~~~P~~v~~lv~~l~~~-~~~~~~i~~H 189 (266)
T cd07944 161 FGSMYPEDIKRIISLLRSN-LDKDIKLGFH 189 (266)
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCCceEEEE
Confidence 499999999999875 32 555544
No 183
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=75.73 E-value=75 Score=33.28 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCCCCEEEecccCCH---HHHHHH---HHHHH----hcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhh
Q psy15811 410 HRPNVEALVRAGVDYLALETIPAE---KEALAL---VKLLR----EFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 479 (581)
Q Consensus 410 ~~~~~~~l~~~gvD~i~~ET~p~~---~Ea~a~---~~~~~----~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~ 479 (581)
||..++.+ .++|+..=|.++.. ...+.. ...+. ...+.|+.+++. |.++++.+++....
T Consensus 16 fR~l~~~~--g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~---------g~~p~~~~~aA~~~ 84 (312)
T PRK10550 16 VRELLTEV--NDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL---------GQYPQWLAENAARA 84 (312)
T ss_pred HHHHHHHh--CCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec---------cCCHHHHHHHHHHH
Confidence 44444332 24899998988741 111111 11111 112478888873 55544444333222
Q ss_pred CCCCceEEEECCCCCc-----------------cchHHHHHHHhhC-CCCeEEEeeCCCCCcccccccccCCcCHHHHHH
Q psy15811 480 NPDQIQAIGVNCVRPS-----------------HVSTLVRCIKQSH-PTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILH 541 (581)
Q Consensus 480 ~~~~~~~iGiNC~~p~-----------------~~~~~l~~l~~~~-~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~ 541 (581)
...+.++|-|||..|. .+..+++.++... ++.|+.+.-..| |.. .+++.+
T Consensus 85 ~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g---------~~~---~~~~~~ 152 (312)
T PRK10550 85 VELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLG---------WDS---GERKFE 152 (312)
T ss_pred HHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECC---------CCC---chHHHH
Confidence 3457889999995443 1223345555443 248998887654 211 123456
Q ss_pred HHHHHHHcCCcE
Q psy15811 542 YVPQWLEEGVNI 553 (581)
Q Consensus 542 ~~~~w~~~G~~i 553 (581)
+++.+.+.|+..
T Consensus 153 ~a~~l~~~Gvd~ 164 (312)
T PRK10550 153 IADAVQQAGATE 164 (312)
T ss_pred HHHHHHhcCCCE
Confidence 666666666544
No 184
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=75.67 E-value=11 Score=38.79 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=42.8
Q ss_pred CCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHhcC
Q psy15811 371 SISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLREFP 447 (581)
Q Consensus 371 ~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~~~ 447 (581)
++.++-+.-.+|.+. +..+...+.++.|.+.++|+|.+-..|. ......++..+++..
T Consensus 9 ~~~~~s~E~~PPk~~-------------------~~~~~l~~~~~~l~~~~pd~vsVTd~~~~~~~~~s~~~a~~l~~~~ 69 (287)
T PF02219_consen 9 GEFVVSFELFPPKGA-------------------DGEEKLLEAAERLKDLGPDFVSVTDNPGGSSRMMSLLAAAKLLKET 69 (287)
T ss_dssp SS-EEEEEE---SSH-------------------HHHHHHHHHHHHHHTT--SEEEE---GCGTTHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEeCCCCc-------------------hHHHHHHHHHHHhcCCCCCEEEeecCCCCcccCCcHHHHHHHHHHh
Confidence 345777888888641 2334556677888888999998877766 455555556665447
Q ss_pred CCeEEEEEEEcCCCc
Q psy15811 448 GQKAWLSFSCKDDTH 462 (581)
Q Consensus 448 ~~pv~iSft~~~~~~ 462 (581)
++++++||+|++.++
T Consensus 70 g~~~i~Hlt~rd~n~ 84 (287)
T PF02219_consen 70 GIEPIPHLTCRDRNR 84 (287)
T ss_dssp T--EEEEEESTTSBH
T ss_pred CCceEEeecccCCCH
Confidence 999999999998654
No 185
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=75.56 E-value=58 Score=34.23 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=46.9
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCC--CCHHHHHHHHHhhCCCCceEEEeC
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHG--ELISSAVTSCLLANPDQIQAIGVN 234 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G--~~~~~~~~~~~~~~~~~~~~vGvN 234 (581)
.++.+.+.|+|.+-++...++.|++ +...+ .+.+.--+++...+..| +.+.+.+..+.+ .+-..++..
T Consensus 247 ~~~~l~~~g~d~ls~d~~~~l~~~~------~~~g~-~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~---~~~~Il~~g 316 (340)
T TIGR01463 247 ILRDIANNGCFGFSVDMKPGMDHAK------RVIGG-QASLVGNLSPFSTLMNGTPEKVKKLAKEVLY---NGGDIVMPG 316 (340)
T ss_pred hHHHHHHhCCCEEeecCCCCHHHHH------HHcCC-ceEEEecCChHHHhcCCCHHHHHHHHHHHHH---cCCeEECCC
Confidence 3566778899999999998987753 22222 23433444432233334 334444444443 455788889
Q ss_pred CCC-----hhhHHHHHHHHH
Q psy15811 235 CVR-----PSHVSTLVRCIK 249 (581)
Q Consensus 235 C~~-----p~~~~~~l~~l~ 249 (581)
|.- ++.+..+++..+
T Consensus 317 cgi~~~tp~eni~a~v~a~~ 336 (340)
T TIGR01463 317 CDIDWMTPLENLKAMIEACK 336 (340)
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 962 244444444443
No 186
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=75.50 E-value=27 Score=37.99 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc-cCCHHHHHHHHHHHHh-cCCC
Q psy15811 372 ISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALET-IPAEKEALALVKLLRE-FPGQ 449 (581)
Q Consensus 372 ~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET-~p~~~Ea~a~~~~~~~-~~~~ 449 (581)
.+.+|.+++|+... ..++++.|.++|||+|++-+ -++-......++.+|+ ++++
T Consensus 140 ~~l~v~aavg~~~~------------------------~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~ 195 (404)
T PRK06843 140 NKLRVGAAVSIDID------------------------TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNL 195 (404)
T ss_pred cCeEEEEEEeCCHH------------------------HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCC
Confidence 35789999998421 23889999999999999864 3444556667777775 4678
Q ss_pred eEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEE
Q psy15811 450 KAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 489 (581)
Q Consensus 450 pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGi 489 (581)
++++... .+.+++...+ ..++++|.+
T Consensus 196 ~vi~g~V----------~T~e~a~~l~----~aGaD~I~v 221 (404)
T PRK06843 196 DLIAGNI----------VTKEAALDLI----SVGADCLKV 221 (404)
T ss_pred cEEEEec----------CCHHHHHHHH----HcCCCEEEE
Confidence 8776543 3556665554 235555543
No 187
>PLN02417 dihydrodipicolinate synthase
Probab=75.43 E-value=27 Score=35.89 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCCCEEEec-ccCC-----HHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhC
Q psy15811 409 WHRPNVEALVRAGVDYLALE-TIPA-----EKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLAN 480 (581)
Q Consensus 409 ~~~~~~~~l~~~gvD~i~~E-T~p~-----~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~ 480 (581)
.++..++.+.+.|||.|++- |... .+|-+.+++.+.+. ..+|++++.. ..+..++++..+...
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~~i~~a~~a~ 93 (280)
T PLN02417 23 AYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG---------SNSTREAIHATEQGF 93 (280)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC---------CccHHHHHHHHHHHH
Confidence 46677888888999998763 3222 67777777765543 2478887762 345677777765555
Q ss_pred CCCceEEEECCCCCc-------cchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 481 PDQIQAIGVNCVRPS-------HVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 481 ~~~~~~iGiNC~~p~-------~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
..+++++. +..|. .+....+.+... . |+++|-+-
T Consensus 94 ~~Gadav~--~~~P~y~~~~~~~i~~~f~~va~~--~-pi~lYn~P 134 (280)
T PLN02417 94 AVGMHAAL--HINPYYGKTSQEGLIKHFETVLDM--G-PTIIYNVP 134 (280)
T ss_pred HcCCCEEE--EcCCccCCCCHHHHHHHHHHHHhh--C-CEEEEECh
Confidence 67778444 44443 344445555554 4 99999653
No 188
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=75.25 E-value=1.4e+02 Score=33.18 Aligned_cols=177 Identities=14% Similarity=0.145 Sum_probs=98.6
Q ss_pred ChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeE
Q psy15811 40 EPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIE 119 (581)
Q Consensus 40 ~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 119 (581)
..+....|-+...++|.+.|+.- -+++.....++ ++++ ..+..++++.... . ..+
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~-ggatfd~~~~F-l~e~--------p~e~l~~l~~~~~----------~-----~~l 77 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVW-GGATFDVCVRF-LNEN--------PWERLKEIRKRLK----------N-----TKI 77 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec-CCccchhhhcc-cCCC--------HHHHHHHHHHhCC----------C-----CEE
Confidence 44555667788999999999982 22222211111 1111 2333333332210 0 234
Q ss_pred EEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEEEE
Q psy15811 120 TAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLS 198 (581)
Q Consensus 120 VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~is 198 (581)
.+.+.|+--.-+. +| .+++...| ++..+++|+|.| +|-..+++..++.+++++|+. +..+...
T Consensus 78 ~~l~r~~N~~G~~-------~~-----~dDvv~~f---v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~ 141 (467)
T PRK14041 78 QMLLRGQNLVGYR-------HY-----ADDVVELF---VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKH-GAHVQGA 141 (467)
T ss_pred EEEeccccccCcc-------cc-----cchhhHHH---HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHC-CCEEEEE
Confidence 5556666332111 11 23443333 344568899976 666778899999999999875 5555533
Q ss_pred EEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 199 FSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 199 ft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
+++.-.. -.+++..+..+.+....|++.|.+-=+ .|..+.++++.+++. .++||.+.-.
T Consensus 142 i~~t~~p----~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~-~~vpI~~H~H 204 (467)
T PRK14041 142 ISYTVSP----VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKK-FGVPVEVHSH 204 (467)
T ss_pred EEeccCC----CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHh-cCCceEEEec
Confidence 3322111 123443333333333578887776543 499999999999986 5678776643
No 189
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=75.19 E-value=44 Score=37.40 Aligned_cols=98 Identities=13% Similarity=0.202 Sum_probs=67.7
Q ss_pred HHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcE--EEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeC
Q psy15811 158 VEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKA--WLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 234 (581)
Q Consensus 158 ~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv--~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvN 234 (581)
++..++.|+|+| +|-.++++..++.+++++++. +.-+ .+++|..+. .+++..+..+.++...|++.|.+-
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~a-g~~~~~~i~yt~sp~------~t~e~~~~~a~~l~~~Gad~I~Ik 175 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKV-GKHAQGTICYTVSPI------HTVEGFVEQAKRLLDMGADSICIK 175 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHh-CCeEEEEEEEecCCC------CCHHHHHHHHHHHHHcCCCEEEeC
Confidence 445567899997 788899999999999999986 4434 445555431 244444443333335788888775
Q ss_pred CC----ChhhHHHHHHHHHhhCC-CCceEEecC
Q psy15811 235 CV----RPSHVSTLVRCIKQSHP-TVQTIVYPN 262 (581)
Q Consensus 235 C~----~p~~~~~~l~~l~~~~~-~~p~~~~pn 262 (581)
=+ .|..+..+++.+++... ++||.+.-.
T Consensus 176 DtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~H 208 (499)
T PRK12330 176 DMAALLKPQPAYDIVKGIKEACGEDTRINLHCH 208 (499)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 54 49999999999998632 688876654
No 190
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=75.19 E-value=81 Score=30.39 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=43.4
Q ss_pred HHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEEC
Q psy15811 413 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 490 (581)
Q Consensus 413 ~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiN 490 (581)
+++.+.++|+|+|++=-.........+++.+++ .++++++.+.- ..++++++.... ..+++.|+++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~-~g~~~~~~~~~-------~~t~~~~~~~~~----~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKK-HGKEVQVDLIN-------VKDKVKRAKELK----ELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH-cCCEEEEEecC-------CCChHHHHHHHH----HcCCCEEEEc
Confidence 677888999999976544443445677888887 59999986521 133455554443 2266788886
No 191
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=75.12 E-value=1e+02 Score=31.37 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=54.3
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
..+-++.+.++|||.+++=-.|. +|....+..+++. ++..+. .+.+ .++.+. +..+.+....-+-.+++
T Consensus 104 ~e~f~~~~~~aGvdgviipDlp~-ee~~~~~~~~~~~-gl~~i~--lv~P------~T~~er-i~~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVADLPL-EESGDLVEAAKKH-GVKPIF--LVAP------NADDER-LKQIAEKSQGFVYLVSR 172 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCh-HHHHHHHHHHHHC-CCcEEE--EECC------CCCHHH-HHHHHHhCCCCEEEEEC
Confidence 34457778899999999877765 7888889999886 655443 2332 233432 22332222223445566
Q ss_pred CC-CC-----hhhHHHHHHHHHhhCCCCc
Q psy15811 234 NC-VR-----PSHVSTLVRCIKQSHPTVQ 256 (581)
Q Consensus 234 NC-~~-----p~~~~~~l~~l~~~~~~~p 256 (581)
|= +| +..+.+.++.+++. ++.|
T Consensus 173 ~G~TG~~~~~~~~~~~~i~~lr~~-~~~p 200 (256)
T TIGR00262 173 AGVTGARNRAASALNELVKRLKAY-SAKP 200 (256)
T ss_pred CCCCCCcccCChhHHHHHHHHHhh-cCCC
Confidence 63 23 23567788888774 4444
No 192
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=75.09 E-value=22 Score=37.41 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEc-----------------CCCcCCCCCcHH
Q psy15811 408 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCK-----------------DDTHTSHGELIS 470 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~-----------------~~~~l~~G~~~~ 470 (581)
+.--.|+..|.++|+|++-+ ++|+..+++++-+..+ ...+|++.-+.|+ +.|.+.+-+-+.
T Consensus 34 ~atv~QI~~L~~aGceiVRv-avp~~~~A~al~~I~~-~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v~ 111 (346)
T TIGR00612 34 DSTVAQIRALEEAGCDIVRV-TVPDRESAAAFEAIKE-GTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRERVR 111 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHh-CCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHHH
Confidence 34457889999999999875 6788877776655555 4789988766664 234444445677
Q ss_pred HHHHHHHhhCCCCceEEEECCCC
Q psy15811 471 SAVTSCLLANPDQIQAIGVNCVR 493 (581)
Q Consensus 471 ~~~~~l~~~~~~~~~~iGiNC~~ 493 (581)
++++.++ ...-+.=||+|+.+
T Consensus 112 ~vv~~ak--~~~ipIRIGVN~GS 132 (346)
T TIGR00612 112 DVVEKAR--DHGKAMRIGVNHGS 132 (346)
T ss_pred HHHHHHH--HCCCCEEEecCCCC
Confidence 8888773 34456779999943
No 193
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.99 E-value=52 Score=33.38 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=56.3
Q ss_pred HHHHHHCCCcEEEE-EccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC
Q psy15811 158 VEALVRAGVDYLAL-ETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV 236 (581)
Q Consensus 158 ~~~l~~~gvD~l~~-ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~ 236 (581)
++...+.|+|.+-+ -..++..+++.+++.+|+. +..+.+++ .+.++ .+++..+..+......+++.|.+-=+
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~-G~~v~~~~--~~~~~----~~~~~~~~~~~~~~~~G~d~i~l~DT 163 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARKL-GMDVVGFL--MMSHM----ASPEELAEQAKLMESYGADCVYVTDS 163 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHC-CCeEEEEE--EeccC----CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45566889998744 4555677888888888875 66555544 32222 33444333332223567888877433
Q ss_pred ----ChhhHHHHHHHHHhh
Q psy15811 237 ----RPSHVSTLVRCIKQS 251 (581)
Q Consensus 237 ----~p~~~~~~l~~l~~~ 251 (581)
.|+.+..+++.+++.
T Consensus 164 ~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 164 AGAMLPDDVRERVRALREA 182 (263)
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 499999999999985
No 194
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=74.95 E-value=16 Score=39.31 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHCCCcEE-EEEccCC-----H-HHHHHHHHHHHhc---CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHh
Q psy15811 153 WHRPNVEALVRAGVDYL-ALETIPA-----E-KEALALVKLLREF---PGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 222 (581)
Q Consensus 153 ~~~~q~~~l~~~gvD~l-~~ET~~~-----~-~E~~aa~~a~~~~---~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~ 222 (581)
.+.++++.|+++|||+| .-|+..+ . +-++.+.+++++. .+...++.+.+ ++. ..++++.+..
T Consensus 147 ~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~ni-------t~~-~~e~i~~a~~ 218 (367)
T cd08205 147 ELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNI-------TGD-PDELRRRADR 218 (367)
T ss_pred HHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEc-------CCC-HHHHHHHHHH
Confidence 45667788888999998 4444432 2 3333444444432 23323332322 222 3666666555
Q ss_pred hCCCCceEEEeCCC--ChhhHHHHHHHHHhhCCCCceEEecCC
Q psy15811 223 ANPDQIQAIGVNCV--RPSHVSTLVRCIKQSHPTVQTIVYPNK 263 (581)
Q Consensus 223 ~~~~~~~~vGvNC~--~p~~~~~~l~~l~~~~~~~p~~~~pna 263 (581)
+...|++++.+|-- +... ++.+.+. .++||...++.
T Consensus 219 a~~~Gad~vmv~~~~~g~~~----~~~l~~~-~~lpi~~H~a~ 256 (367)
T cd08205 219 AVEAGANALLINPNLVGLDA----LRALAED-PDLPIMAHPAF 256 (367)
T ss_pred HHHcCCCEEEEecccccccH----HHHHHhc-CCCeEEEccCc
Confidence 55788999999884 4543 3444443 57899999886
No 195
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=74.40 E-value=1.2e+02 Score=31.94 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=68.4
Q ss_pred CCCCCHHH---HHHHHHHHHHHHHHCCCcEEEEEc--------------cC-----------CHHHHHHHHHHHHhcC--
Q psy15811 142 VDSMTEAD---LIAWHRPNVEALVRAGVDYLALET--------------IP-----------AEKEALALVKLLREFP-- 191 (581)
Q Consensus 142 ~~~~~~~~---~~~~~~~q~~~l~~~gvD~l~~ET--------------~~-----------~~~E~~aa~~a~~~~~-- 191 (581)
..++|.+| +.+.|.+-++...++|.|.|=+=. -. ....+..+++++|+..
T Consensus 141 p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~ 220 (336)
T cd02932 141 PRELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPE 220 (336)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 35677655 567788888888889999985542 11 1334567777777643
Q ss_pred CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeC---CC-------ChhhHHHHHHHHHhhCCCCceEE
Q psy15811 192 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN---CV-------RPSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 192 ~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvN---C~-------~p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
+.|+.+-++..+ ....|.++++++..+......+++.|-+- ++ .+......++.+++. .++||+.
T Consensus 221 d~~v~vri~~~~--~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~ 295 (336)
T cd02932 221 DKPLFVRISATD--WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE-AGIPVIA 295 (336)
T ss_pred CceEEEEEcccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh-CCCCEEE
Confidence 678888776542 23346667777654433224567766542 11 122234566667664 5566553
No 196
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=74.40 E-value=1.2e+02 Score=31.89 Aligned_cols=137 Identities=9% Similarity=0.054 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhCCCCEEE-ecccCC-----------HHHHHHHHHHHHhcC-CCeEEEEEEEcCCCcCCCCCcHHHHHH
Q psy15811 408 AWHRPNVEALVRAGVDYLA-LETIPA-----------EKEALALVKLLREFP-GQKAWLSFSCKDDTHTSHGELISSAVT 474 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~-~ET~p~-----------~~Ea~a~~~~~~~~~-~~pv~iSft~~~~~~l~~G~~~~~~~~ 474 (581)
+.-.+.++.+.++|+|.|. ++...+ ..-.+-+++.+++.. +.|+ +++++. +. ..+.
T Consensus 177 ~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-lh~cg~--------~~--~~~~ 245 (335)
T cd00717 177 DATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-ILFAKG--------AG--GLLE 245 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEcCC--------CH--HHHH
Confidence 3345556666678999875 554322 222345556666532 4454 577652 22 3345
Q ss_pred HHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCc--
Q psy15811 475 SCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVN-- 552 (581)
Q Consensus 475 ~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~-- 552 (581)
.+. ..++++++++... .+. ..+... +..+.+.-|.-+ . .+ ..++++..+.+++.++.+..
T Consensus 246 ~~~---~~~~~~~s~d~~~--dl~----e~k~~~-g~~~~i~Gni~p----~--~l--~~~~e~i~~~v~~~l~~~~~~~ 307 (335)
T cd00717 246 DLA---QLGADVVGLDWRV--DLD----EARKRL-GPKVALQGNLDP----A--LL--YAPKEAIEKEVKRILKAFGGAP 307 (335)
T ss_pred HHH---hcCCCEEEeCCCC--CHH----HHHHHh-CCCeEEEeCCCh----h--hh--cCCHHHHHHHHHHHHHHhCcCC
Confidence 552 2346777777621 122 222221 123344445421 1 11 12367899999998876544
Q ss_pred --EEe-ecC---CCchHHHHHHHHHHh
Q psy15811 553 --IIG-GCC---EVTSYEIQQMRIMID 573 (581)
Q Consensus 553 --iiG-GCC---Gt~P~hI~al~~~l~ 573 (581)
|+. ||. +|.++.|+++.+.++
T Consensus 308 gfIl~~gc~i~~~tp~eNi~a~v~a~~ 334 (335)
T cd00717 308 GHIFNLGHGILPDTPPENVKALVEAVH 334 (335)
T ss_pred CceeecCCcCCCCcCHHHHHHHHHHHh
Confidence 554 565 788999999988765
No 197
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=74.40 E-value=1.1e+02 Score=32.41 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
+.-..|+..|.++|+|++= =|+|+.+++++. ..+++...+|++.-+.|+ ..-|+.++ ..+++.+
T Consensus 34 ~atv~QI~~L~~aGceiVR-vavp~~~~A~al-~~I~~~~~iPlVADIHFd----------~~lAl~a~----~~g~dki 97 (346)
T TIGR00612 34 DSTVAQIRALEEAGCDIVR-VTVPDRESAAAF-EAIKEGTNVPLVADIHFD----------YRLAALAM----AKGVAKV 97 (346)
T ss_pred HHHHHHHHHHHHcCCCEEE-EcCCCHHHHHhH-HHHHhCCCCCEEEeeCCC----------cHHHHHHH----HhccCeE
Confidence 4566799999999999875 478999776654 444444579999977775 22344444 3688999
Q ss_pred EeCCC---ChhhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHH
Q psy15811 232 GVNCV---RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRD 308 (581)
Q Consensus 232 GvNC~---~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~ 308 (581)
=+|=. +.+.+.++++..+. .++|+=+=-|+|-+ ...|.+.+| . .+||.+.+-..+
T Consensus 98 RINPGNig~~e~v~~vv~~ak~--~~ipIRIGVN~GSL------~~~~~~kyg-----~---------~t~eamveSAl~ 155 (346)
T TIGR00612 98 RINPGNIGFRERVRDVVEKARD--HGKAMRIGVNHGSL------ERRLLEKYG-----D---------ATAEAMVQSALE 155 (346)
T ss_pred EECCCCCCCHHHHHHHHHHHHH--CCCCEEEecCCCCC------cHHHHHHcC-----C---------CCHHHHHHHHHH
Confidence 99986 47888888888877 47888888788732 223433322 2 378887776667
Q ss_pred HHHH
Q psy15811 309 FIRG 312 (581)
Q Consensus 309 yl~a 312 (581)
+++-
T Consensus 156 ~v~~ 159 (346)
T TIGR00612 156 EAAI 159 (346)
T ss_pred HHHH
Confidence 7664
No 198
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=74.29 E-value=72 Score=30.59 Aligned_cols=113 Identities=17% Similarity=0.282 Sum_probs=71.6
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
++++.+.+.|+|++.. |... ..++++.++ .+.++++.. ++++++.+++ ..+++.|++-=
T Consensus 67 ~~~~~a~~~Ga~~i~~---p~~~--~~~~~~~~~-~~~~~i~gv-----------~t~~e~~~A~----~~Gad~i~~~p 125 (190)
T cd00452 67 EQADAAIAAGAQFIVS---PGLD--PEVVKAANR-AGIPLLPGV-----------ATPTEIMQAL----ELGADIVKLFP 125 (190)
T ss_pred HHHHHHHHcCCCEEEc---CCCC--HHHHHHHHH-cCCcEECCc-----------CCHHHHHHHH----HCCCCEEEEcC
Confidence 6788888899999974 3211 245555665 477877533 2677777765 34668888754
Q ss_pred CCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCchHHH
Q psy15811 492 VRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEI 565 (581)
Q Consensus 492 ~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI 565 (581)
.++. -...++.++...+..|+++- .| . + .+.+.+|++.|+..|+.+.....+.+
T Consensus 126 ~~~~-g~~~~~~l~~~~~~~p~~a~--GG-I------------~----~~n~~~~~~~G~~~v~v~s~i~~~~~ 179 (190)
T cd00452 126 AEAV-GPAYIKALKGPFPQVRFMPT--GG-V------------S----LDNAAEWLAAGVVAVGGGSLLPKDAV 179 (190)
T ss_pred Cccc-CHHHHHHHHhhCCCCeEEEe--CC-C------------C----HHHHHHHHHCCCEEEEEchhcchhhh
Confidence 4444 56677777664433554432 22 1 0 13457899999999998887775443
No 199
>PLN02540 methylenetetrahydrofolate reductase
Probab=74.17 E-value=90 Score=35.52 Aligned_cols=109 Identities=12% Similarity=0.137 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCC
Q psy15811 407 IAWHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQ 483 (581)
Q Consensus 407 ~~~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~ 483 (581)
.+....+++.|.+.+.++|-+-.-+. ......++..+++..++++++|+||++.++. .+.+.+..+.++.-.+
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~----~L~~~L~~a~~~GIrN 89 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVE----KIDHALETIKSNGIQN 89 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHH----HHHHHHHHHHHCCCCE
Confidence 44555688889889999986543322 4556677777777679999999999876542 3455555443221111
Q ss_pred ceEEE------EC----C-CCCccchHHHHHHHhhC---CCCeEEEeeCC
Q psy15811 484 IQAIG------VN----C-VRPSHVSTLVRCIKQSH---PTVQTIVYPNK 519 (581)
Q Consensus 484 ~~~iG------iN----C-~~p~~~~~~l~~l~~~~---~~~pl~~ypNa 519 (581)
+.++. -. + ..-.+...+++.++... ..+-+..||..
T Consensus 90 ILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEg 139 (565)
T PLN02540 90 ILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEA 139 (565)
T ss_pred EEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCC
Confidence 11110 00 0 01123667777777642 23567788864
No 200
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=74.15 E-value=10 Score=39.89 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=54.1
Q ss_pred HHHHHHHHHHCCC-cEEEEEccCCHHHHHH-HHHHHHh-cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceE
Q psy15811 154 HRPNVEALVRAGV-DYLALETIPAEKEALA-LVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQA 230 (581)
Q Consensus 154 ~~~q~~~l~~~gv-D~l~~ET~~~~~E~~a-a~~a~~~-~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~ 230 (581)
||..++.+ |+ |++.=|-+..-.=... --+.++. -.+.|+++|+.-. +.+.+.+++..+. ..+.++
T Consensus 16 fR~l~~~~---g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~---~~g~d~ 83 (318)
T TIGR00742 16 FRYFLRLL---SKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGS------DPNDLAKCAKIAE---KRGYDE 83 (318)
T ss_pred HHHHHHHh---CCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEccC------CHHHHHHHHHHHH---hCCCCE
Confidence 55554433 76 7776665543210000 0012221 1368999887432 2233444444443 467999
Q ss_pred EEeCCCChhh-----------------HHHHHHHHHhhCCCCceEEecCCC
Q psy15811 231 IGVNCVRPSH-----------------VSTLVRCIKQSHPTVQTIVYPNKG 264 (581)
Q Consensus 231 vGvNC~~p~~-----------------~~~~l~~l~~~~~~~p~~~~pnag 264 (581)
|-+||++|.. +.++++.++.. .++|++++-..|
T Consensus 84 IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~-~~~PVsvKiR~g 133 (318)
T TIGR00742 84 INLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA-VNIPVTVKHRIG 133 (318)
T ss_pred EEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH-hCCCeEEEEecC
Confidence 9999987643 35666777664 567888875444
No 201
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=74.13 E-value=34 Score=34.76 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=29.2
Q ss_pred CccccccCCChHHHHHHHHHHHHhcccccccccccccc
Q psy15811 31 LWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANV 68 (581)
Q Consensus 31 ~ws~~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~ 68 (581)
.|+.-.....|+.+.+.-+.++++||++|-.+....++
T Consensus 12 SF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p 49 (257)
T TIGR01496 12 SFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRP 49 (257)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
Confidence 34555555678888888899999999999998665555
No 202
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=74.10 E-value=1e+02 Score=31.96 Aligned_cols=118 Identities=17% Similarity=0.082 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q psy15811 341 MTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRA 420 (581)
Q Consensus 341 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~ 420 (581)
++-++..++.+..|++|+.. .+-|=+-+|-.|. -.++.+...+..--+++++..+|.++ .
T Consensus 108 lp~eeNi~~T~~vv~~Ah~~------------gvsVEaElG~igg-~e~~~~~~~~~~~~T~peeA~~Fv~~-------T 167 (284)
T PRK12737 108 LSFEENIAIVKEVVEFCHRY------------DASVEAELGRLGG-QEDDLVVDEKDAMYTNPDAAAEFVER-------T 167 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHc------------CCEEEEEEeeccC-ccCCcccccccccCCCHHHHHHHHHH-------h
Confidence 34555556777777777764 2556555555431 11221111110012467776666654 6
Q ss_pred CCCEEEec--ccCCH------HHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 421 GVDYLALE--TIPAE------KEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 421 gvD~i~~E--T~p~~------~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
|||.|.+- |..-. .+. ..++.+++..++|..+|= .+|.+-++.-+.+ ..++.=|.|+.
T Consensus 168 gvD~LAvaiGt~HG~y~~~p~Ld~-~~L~~I~~~~~iPLVlHG--------gSG~~~e~~~kai----~~Gi~KiNi~T 233 (284)
T PRK12737 168 GIDSLAVAIGTAHGLYKGEPKLDF-ERLAEIREKVSIPLVLHG--------ASGVPDEDVKKAI----SLGICKVNVAT 233 (284)
T ss_pred CCCEEeeccCccccccCCCCcCCH-HHHHHHHHHhCCCEEEeC--------CCCCCHHHHHHHH----HCCCeEEEeCc
Confidence 99998654 32211 111 234444444578877654 3577777765554 33555444544
No 203
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.09 E-value=53 Score=32.46 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=64.1
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
+|++...++|++||+ .|... ..++++.++ .++|++... .++.++...+ ..+++.|++-=
T Consensus 79 ~~~~~a~~aGA~Fiv---sP~~~--~~v~~~~~~-~~i~~iPG~-----------~T~~E~~~A~----~~Gad~vklFP 137 (213)
T PRK06552 79 VTARLAILAGAQFIV---SPSFN--RETAKICNL-YQIPYLPGC-----------MTVTEIVTAL----EAGSEIVKLFP 137 (213)
T ss_pred HHHHHHHHcCCCEEE---CCCCC--HHHHHHHHH-cCCCEECCc-----------CCHHHHHHHH----HcCCCEEEECC
Confidence 788888999999999 44432 244555665 589988432 4567777765 24667888721
Q ss_pred CCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeec
Q psy15811 492 VRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGC 557 (581)
Q Consensus 492 ~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGC 557 (581)
.++-. ...|+.++...+.+|++ |-.|-. .+.+.+|++.|+..+|..
T Consensus 138 a~~~G-~~~ik~l~~~~p~ip~~--atGGI~-----------------~~N~~~~l~aGa~~vavg 183 (213)
T PRK06552 138 GSTLG-PSFIKAIKGPLPQVNVM--VTGGVN-----------------LDNVKDWFAAGADAVGIG 183 (213)
T ss_pred cccCC-HHHHHHHhhhCCCCEEE--EECCCC-----------------HHHHHHHHHCCCcEEEEc
Confidence 12111 34466666544346655 444311 134578999998776654
No 204
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=74.02 E-value=46 Score=38.12 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=66.4
Q ss_pred HHHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEE--EEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 157 NVEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAW--LSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 157 q~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~--isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
-++...+.|+|.| +|-.++++..++.+++++|+. +..+- +++|..+. ++ =..+.+.++.+. ..|++.|.+
T Consensus 102 ~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~-~~--~~~~~~~a~~l~---~~Gad~i~i 174 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKV-GAHAQGTLSYTTSPV-HT--LQTWVDLAKQLE---DMGVDSLCI 174 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCc-cC--HHHHHHHHHHHH---HcCCCEEEE
Confidence 3455678999976 777889999999999999986 66544 44444331 11 122334444443 578888777
Q ss_pred CCC----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 234 NCV----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 234 NC~----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
-=+ .|..+.++++.++.. .++||.+.-.
T Consensus 175 ~Dt~G~l~P~~~~~lv~~lk~~-~~~pi~~H~H 206 (593)
T PRK14040 175 KDMAGLLKPYAAYELVSRIKKR-VDVPLHLHCH 206 (593)
T ss_pred CCCCCCcCHHHHHHHHHHHHHh-cCCeEEEEEC
Confidence 543 499999999999986 5788775543
No 205
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=73.86 E-value=63 Score=33.93 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=49.2
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCC--CHHHHHHHHHhhCCCCceEEEeC
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGE--LISSAVTSCLLANPDQIQAIGVN 234 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~--~~~~~~~~~~~~~~~~~~~vGvN 234 (581)
.++.+.+.|+|.+-++.-.++.|++..+ .+ .+.+.--+++...+..|+ .+.+.+..+.+ .+...+...
T Consensus 245 ~l~~~~~~g~d~~~~d~~~dl~~~~~~~------g~-~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~---~g~~Il~~g 314 (339)
T PRK06252 245 ILEEMADCGFDGISIDEKVDVKTAKENV------GD-RAALIGNVSTSFTLLNGTPEKVKAEAKKCLE---DGVDILAPG 314 (339)
T ss_pred HHHHHHhcCCCeeccCCCCCHHHHHHHh------CC-CeEEEeccCcHHHhcCCCHHHHHHHHHHHHH---cCCCEEcCC
Confidence 4667778999999988888887765322 11 133333444423344443 34444444443 456788899
Q ss_pred CC-C----hhhHHHHHHHHHh
Q psy15811 235 CV-R----PSHVSTLVRCIKQ 250 (581)
Q Consensus 235 C~-~----p~~~~~~l~~l~~ 250 (581)
|. . ++++..+++..+.
T Consensus 315 cgi~~~tp~enl~a~v~a~~~ 335 (339)
T PRK06252 315 CGIAPKTPLENIKAMVEARKE 335 (339)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 96 2 4566666665554
No 206
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=73.84 E-value=10 Score=36.67 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=37.7
Q ss_pred ccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccC
Q psy15811 36 YLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLT 115 (581)
Q Consensus 36 ~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~ 115 (581)
+++.+||-.+.+++ |-+.|||+.+| |+ +..+.++|++.+++++ . .
T Consensus 3 lDl~~~~gr~~l~~--L~~~ADV~i~n-~r--pg~~~~lGl~~~~l~~--------------~------------n---- 47 (191)
T PF02515_consen 3 LDLKSPEGRAALRR--LLATADVVIEN-FR--PGVLERLGLDYEALRA--------------I------------N---- 47 (191)
T ss_dssp EETTSHHHHHHHHH--HHHT-SEEEEE-SS--TTHHHHTT-SHHHHHH--------------H-----------------
T ss_pred eeCcCHHHHHHHHH--HHHhCCEEEEC-Cc--hhhhHhcCCCHHHHHh--------------h------------C----
Confidence 56788886665554 34479999998 55 6667889998655532 1 1
Q ss_pred CCeEEEeecCCcCC
Q psy15811 116 GHIETAASIGPYGT 129 (581)
Q Consensus 116 ~~~~VagsiGP~g~ 129 (581)
+.+|..||.++|.
T Consensus 48 -P~LV~~~isgfG~ 60 (191)
T PF02515_consen 48 -PRLVYCSISGFGQ 60 (191)
T ss_dssp -TT-EEEEEESS-S
T ss_pred -CCCeEEEEEeecC
Confidence 6688899999996
No 207
>PRK15452 putative protease; Provisional
Probab=73.83 E-value=30 Score=38.09 Aligned_cols=97 Identities=9% Similarity=0.087 Sum_probs=59.9
Q ss_pred HHHHHHHHCCCcEEEE----------EccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCC
Q psy15811 156 PNVEALVRAGVDYLAL----------ETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANP 225 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~----------ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~ 225 (581)
+++++.+++|+|.|.+ -.-.+.+|++.+++.+++. ++.+++.+- ++.....+..+...+.....
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~-g~kvyvt~n-----~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHAL-GKKFYVVVN-----IAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHc-CCEEEEEec-----CcCCHHHHHHHHHHHHHHHh
Confidence 5677888999999998 2344678899999999885 788888542 22333334444444433335
Q ss_pred CCceEEEeCCCChhhHHHHHHHHHhhCCCCceEEecCCC
Q psy15811 226 DQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKG 264 (581)
Q Consensus 226 ~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~~~~pnag 264 (581)
.++|+|-|.-- . ++..+++..+++|+..-.+..
T Consensus 88 ~gvDgvIV~d~--G----~l~~~ke~~p~l~ih~stqln 120 (443)
T PRK15452 88 MKPDALIMSDP--G----LIMMVREHFPEMPIHLSVQAN 120 (443)
T ss_pred CCCCEEEEcCH--H----HHHHHHHhCCCCeEEEEeccc
Confidence 78898888763 2 223333322456665554443
No 208
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=73.81 E-value=5.1 Score=41.16 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=37.1
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEE
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSC 201 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~ 201 (581)
--+++.+++++|+|.|+.|-+.+.+|.+...++++ +|+.+.++-
T Consensus 168 AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~----~pl~~N~t~ 211 (289)
T COG2513 168 AIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP----VPLPANITE 211 (289)
T ss_pred HHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC----CCeeeEeec
Confidence 45688999999999999999999999998888875 677776653
No 209
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=73.71 E-value=1.2e+02 Score=31.61 Aligned_cols=228 Identities=15% Similarity=0.182 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhccccccccccccccccHhh-cCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEE
Q psy15811 42 EACVETHRDFIRAGADIIQSSCYQANVDNLTK-LGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIET 120 (581)
Q Consensus 42 e~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~-~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~V 120 (581)
+.+.+--++-++.|-..|.. |+.-....+. .|-....-.-++++|++..|+...+ ..|
T Consensus 61 d~l~~~~~~~~~lGi~av~L--Fgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~-------------------l~i 119 (330)
T COG0113 61 DRLVEEAEELVDLGIPAVIL--FGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPE-------------------LVV 119 (330)
T ss_pred HHHHHHHHHHHhcCCCEEEE--eCCCcccccCcccccccCCCChHHHHHHHHHHhCCC-------------------eEE
Confidence 34555556677888876543 5554333333 2221111224788888877766532 333
Q ss_pred Ee--ecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc--CCCcEE
Q psy15811 121 AA--SIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF--PGQKAW 196 (581)
Q Consensus 121 ag--siGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~--~~~pv~ 196 (581)
.. ++-||.+.=+.|--+.+ +.+..|+-.+.+.+|+-..+++|+|++.==-|-|. .+.++.+++.+. .+.|++
T Consensus 120 itDvcLceyT~HGHcGil~~~---~~V~ND~Tle~l~k~Avs~AeAGAdivAPSdMMDG-rV~aIR~aLd~ag~~~v~IM 195 (330)
T COG0113 120 ITDVCLCEYTDHGHCGILDDG---GYVDNDETLEILAKQAVSQAEAGADIVAPSDMMDG-RVGAIREALDEAGFIDVPIM 195 (330)
T ss_pred EeeecccCCcCCCccccccCC---CeecchHHHHHHHHHHHHHHHcCCCeecccccccc-hHHHHHHHHHHcCCCcceee
Confidence 33 46677765555432222 14677889999999999999999999975555554 456666666643 356554
Q ss_pred EEEEEc-----------------C--CC--cCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCC
Q psy15811 197 LSFSCK-----------------D--DT--HTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTV 255 (581)
Q Consensus 197 isft~~-----------------~--~g--~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~ 255 (581)
|.+.+ . +. +-++-....+|+..+......|+|.+.|-=+.| -+.+++.++.. .++
T Consensus 196 -sYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKPal~--YLDIi~~vk~~-~~l 271 (330)
T COG0113 196 -SYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKPALP--YLDIIRRVKEE-FNL 271 (330)
T ss_pred -ehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcCCch--HHHHHHHHHHh-cCC
Confidence 32221 0 11 123444556677665444467899999987765 35778888875 789
Q ss_pred ceEEecCCC-ccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc
Q psy15811 256 QTIVYPNKG-VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA 317 (581)
Q Consensus 256 p~~~~pnag-~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn 317 (581)
|+.+|--+| .-++ +.. ...+ | ++....|.+....|-+| .|.|.
T Consensus 272 P~~AYqVSGEYaMi--------kAA----a~nG--w-----ide~~~vlEsL~~~kRAGAd~IiTY 318 (330)
T COG0113 272 PVAAYQVSGEYAMI--------KAA----AQNG--W-----IDEEKVVLESLTSIKRAGADLIITY 318 (330)
T ss_pred CeEEEecchHHHHH--------HHH----HHcC--C-----cchHHHHHHHHHHHHhcCCCEEEee
Confidence 999996666 2111 110 0011 4 55666788888888888 66664
No 210
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=73.71 E-value=16 Score=37.84 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=39.7
Q ss_pred CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC------------hhhHHHHHHHHHhhCCCCceE
Q psy15811 191 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR------------PSHVSTLVRCIKQSHPTVQTI 258 (581)
Q Consensus 191 ~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~------------p~~~~~~l~~l~~~~~~~p~~ 258 (581)
.+.|+++|+... -+.+.++++.+.+....++++|=+|+++ |+.+.++++.+++. .++|++
T Consensus 90 ~~~pvivsi~g~-------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~-~~iPv~ 161 (294)
T cd04741 90 SAKPFFISVTGS-------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA-YSIPVG 161 (294)
T ss_pred cCCeEEEECCCC-------HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh-cCCCEE
Confidence 368999988422 1223333333332011168999999974 45677788888875 678888
Q ss_pred Eec
Q psy15811 259 VYP 261 (581)
Q Consensus 259 ~~p 261 (581)
++.
T Consensus 162 vKl 164 (294)
T cd04741 162 VKT 164 (294)
T ss_pred EEe
Confidence 874
No 211
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=73.49 E-value=26 Score=34.52 Aligned_cols=103 Identities=19% Similarity=0.194 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
+.|.+.++.+++.|+|++=+|--..-+.... ....+. .+.++++|+.-- ..+++-..+.+.+..+. ..+++.+
T Consensus 75 ~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~-~~~~~~-~~~~iI~S~H~f--~~tp~~~~l~~~~~~~~---~~gadiv 147 (224)
T PF01487_consen 75 EEYLELLERAIRLGPDYIDIELDLFPDDLKS-RLAARK-GGTKIILSYHDF--EKTPSWEELIELLEEMQ---ELGADIV 147 (224)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGCCHHHHHH-HHHHHH-TTSEEEEEEEES--S---THHHHHHHHHHHH---HTT-SEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccchhHHHH-HHHHhh-CCCeEEEEeccC--CCCCCHHHHHHHHHHHH---hcCCCeE
Confidence 5677778888888999999998644433333 333333 478999999722 12333333555555554 5788888
Q ss_pred EeCCC--ChhhHHHHHHHHHhhC--CCCceEEec
Q psy15811 232 GVNCV--RPSHVSTLVRCIKQSH--PTVQTIVYP 261 (581)
Q Consensus 232 GvNC~--~p~~~~~~l~~l~~~~--~~~p~~~~p 261 (581)
=+-|. .+++...+++...... .+.|++.++
T Consensus 148 Kia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~ 181 (224)
T PF01487_consen 148 KIAVMANSPEDVLRLLRFTKEFREEPDIPVIAIS 181 (224)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred EEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEE
Confidence 88774 5777776666655431 468888874
No 212
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=73.46 E-value=1.1e+02 Score=32.58 Aligned_cols=123 Identities=19% Similarity=0.231 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
+.-..|+..|.++|+|++= =|+|+.+++++.-+..++ ..+|++.-+.|+ ..-|+.++ ..|++.+
T Consensus 42 ~atv~Qi~~L~~aGceiVR-vav~~~~~a~al~~I~~~-~~iPlvADIHFd----------~~lAl~a~----~~G~~~i 105 (360)
T PRK00366 42 EATVAQIKRLARAGCEIVR-VAVPDMEAAAALPEIKKQ-LPVPLVADIHFD----------YRLALAAA----EAGADAL 105 (360)
T ss_pred HHHHHHHHHHHHcCCCEEE-EccCCHHHHHhHHHHHHc-CCCCEEEecCCC----------HHHHHHHH----HhCCCEE
Confidence 4567799999999999875 488999776655444444 479999877775 23344444 4689999
Q ss_pred EeCCC---C-hhhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHH
Q psy15811 232 GVNCV---R-PSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHR 307 (581)
Q Consensus 232 GvNC~---~-p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~ 307 (581)
=+|=. . .+.+.++++..+. .++||=+=-|+|- +..++.+++ |+| +||.+.+-..
T Consensus 106 RINPGNig~~~~~v~~vv~~ak~--~~ipIRIGvN~GS------L~~~~~~~y-----g~~---------t~eamveSAl 163 (360)
T PRK00366 106 RINPGNIGKRDERVREVVEAAKD--YGIPIRIGVNAGS------LEKDLLEKY-----GEP---------TPEALVESAL 163 (360)
T ss_pred EECCCCCCchHHHHHHHHHHHHH--CCCCEEEecCCcc------ChHHHHHHc-----CCC---------CHHHHHHHHH
Confidence 99986 3 5677888887776 4778877777773 223343432 223 7888776666
Q ss_pred HHHHH
Q psy15811 308 DFIRG 312 (581)
Q Consensus 308 ~yl~a 312 (581)
++++.
T Consensus 164 ~~~~~ 168 (360)
T PRK00366 164 RHAKI 168 (360)
T ss_pred HHHHH
Confidence 77664
No 213
>PLN02433 uroporphyrinogen decarboxylase
Probab=73.08 E-value=1.3e+02 Score=31.80 Aligned_cols=139 Identities=10% Similarity=0.050 Sum_probs=74.3
Q ss_pred HHHHHHHhCCCCEE-EecccCC-----------HHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHh
Q psy15811 412 PNVEALVRAGVDYL-ALETIPA-----------EKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 478 (581)
Q Consensus 412 ~~~~~l~~~gvD~i-~~ET~p~-----------~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~ 478 (581)
+.++.+.++|+|++ +++..++ ..=.+-+++.+++. .+.|++++. |. .+ ..+..+.
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~-cG--------~~--~~~~~~~- 250 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYA-NG--------SG--GLLERLA- 250 (345)
T ss_pred HHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe-CC--------CH--HHHHHHH-
Confidence 44455566899987 5543333 12224455566542 246655544 42 21 2344552
Q ss_pred hCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCc---EEe
Q psy15811 479 ANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVN---IIG 555 (581)
Q Consensus 479 ~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~---iiG 555 (581)
..+++++++-.. ..+..+ .+..+ ..+.+.-|.-+. ....+++++.+.+++.++.+.. |+.
T Consensus 251 --~~~~~~i~~d~~--~dl~e~---~~~~g--~~~~l~GNi~p~--------ll~gt~e~i~~~v~~~i~~~~~~g~Il~ 313 (345)
T PLN02433 251 --GTGVDVIGLDWT--VDMADA---RRRLG--SDVAVQGNVDPA--------VLFGSKEAIEKEVRDVVKKAGPQGHILN 313 (345)
T ss_pred --hcCCCEEEcCCC--CCHHHH---HHHhC--CCeEEEeCCCch--------hhCCCHHHHHHHHHHHHHHcCCCCeEEe
Confidence 235565554331 112222 22222 224444465321 1134578899999998876443 665
Q ss_pred ecC----CCchHHHHHHHHHHhcccCCC
Q psy15811 556 GCC----EVTSYEIQQMRIMIDEFNTKK 579 (581)
Q Consensus 556 GCC----Gt~P~hI~al~~~l~~~~~~~ 579 (581)
--| +|.|++|+++-+.++++.-+|
T Consensus 314 ~Gc~i~~~tp~eNi~a~v~av~~~~~~~ 341 (345)
T PLN02433 314 LGHGVLVGTPEENVAHFFDVARELRYEM 341 (345)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhChhh
Confidence 444 467899999999998765543
No 214
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=73.03 E-value=26 Score=35.69 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecccCCH-----------HHHHHHHHHHHhcCCCeEEEEE
Q psy15811 401 MTEADLIAWHRPNVEALVRAGVDYLALETIPAE-----------KEALALVKLLREFPGQKAWLSF 455 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~-----------~Ea~a~~~~~~~~~~~pv~iSf 455 (581)
.+.+++.+.-.+-++.|.++|+|.|++|.+.+. .-+..++..+++..++|+=+.+
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~Gvnv 86 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINV 86 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeee
Confidence 578999999999999999999999999988772 2222333445555677844333
No 215
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=73.00 E-value=45 Score=37.36 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCcEEEEEcc-CCHHHHHHHHHHHHhc-CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 155 RPNVEALVRAGVDYLALETI-PAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 155 ~~q~~~l~~~gvD~l~~ET~-~~~~E~~aa~~a~~~~-~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
.++++.|+++|+|+|.+-+- .+...+...++.+|+. +++|+++ | +..+.+++...+ ..|+++|
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-------G---~V~t~~~a~~~~----~aGad~I 307 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-------G---NVVTADQAKNLI----DAGADGL 307 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-------C---CcCCHHHHHHHH----HcCCCEE
Confidence 67899999999999988652 2334455667777754 6788876 2 335555554333 4677776
No 216
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=72.88 E-value=17 Score=36.33 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEecccCC-----------HHHHHHHHHHHHhcCCCeEEEEE
Q psy15811 402 TEADLIAWHRPNVEALVRAGVDYLALETIPA-----------EKEALALVKLLREFPGQKAWLSF 455 (581)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~-----------~~Ea~a~~~~~~~~~~~pv~iSf 455 (581)
+.+++.+.-.+-++.|.++|+|.+++|.+.+ ..-+..++.-+++..++|+=|.+
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNV 92 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNV 92 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeee
Confidence 7899999999999999999999999998776 11222333334444688887766
No 217
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=72.81 E-value=16 Score=39.89 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=40.4
Q ss_pred CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChh----------------hHHHHHHHHHhhCCC
Q psy15811 191 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPS----------------HVSTLVRCIKQSHPT 254 (581)
Q Consensus 191 ~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~----------------~~~~~l~~l~~~~~~ 254 (581)
++.|+++|+.... +.+.+.+++..+. ..++++|=+|++.|. .+.++++.++.. .+
T Consensus 98 ~~~p~i~si~g~~-----~~~~~~~~a~~~~---~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~ 168 (420)
T PRK08318 98 PDRALIASIMVEC-----NEEEWKEIAPLVE---ETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SR 168 (420)
T ss_pred CCceEEEEeccCC-----CHHHHHHHHHHHH---hcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cC
Confidence 4688888874220 1133444444443 467899999987654 555677777764 67
Q ss_pred CceEEecC
Q psy15811 255 VQTIVYPN 262 (581)
Q Consensus 255 ~p~~~~pn 262 (581)
+||+++..
T Consensus 169 ~Pv~vKl~ 176 (420)
T PRK08318 169 LPVIVKLT 176 (420)
T ss_pred CcEEEEcC
Confidence 89988854
No 218
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=72.80 E-value=43 Score=41.44 Aligned_cols=108 Identities=6% Similarity=0.151 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCC----CCCHHHHHHHHHh
Q psy15811 148 ADLIAWHRPNVEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSH----GELISSAVTSCLL 222 (581)
Q Consensus 148 ~~~~~~~~~q~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~----G~~~~~~~~~~~~ 222 (581)
+++...|-+ ...+.|+|+| +|-.+.++..++.+++++|+. +.-+-..+++. |...+ -.+++-.+..+.+
T Consensus 624 d~vv~~f~~---~~~~~GidifrifD~lN~~~n~~~~~~~~~~~-g~~~~~~i~yt--~~~~d~~~~~~~l~y~~~~ak~ 697 (1143)
T TIGR01235 624 DNVVKYFVK---QAAQGGIDIFRVFDSLNWVENMRVGMDAVAEA-GKVVEAAICYT--GDILDPARPKYDLKYYTNLAVE 697 (1143)
T ss_pred HHHHHHHHH---HHHHcCCCEEEECccCcCHHHHHHHHHHHHHc-CCEEEEEEEEe--ccCCCcCCCCCCHHHHHHHHHH
Confidence 445444443 3557899998 889999999999999999986 65554444443 11112 2334433332222
Q ss_pred hCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 223 ANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 223 ~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
+...|++.|.+-=+ .|..+..+++.++.. .++||.+.-.
T Consensus 698 l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~-~~~pi~~H~H 740 (1143)
T TIGR01235 698 LEKAGAHILGIKDMAGLLKPAAAKLLIKALREK-TDLPIHFHTH 740 (1143)
T ss_pred HHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHh-cCCeEEEEEC
Confidence 23578888887654 499999999999986 5788776543
No 219
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=72.73 E-value=1.1e+02 Score=30.86 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=70.6
Q ss_pred HHHHHHHhCCCCEEEeccc--CC-----HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCc
Q psy15811 412 PNVEALVRAGVDYLALETI--PA-----EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQI 484 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~--p~-----~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~ 484 (581)
..++.+++.|+|.+-+... ++ +.+++.+.+..++ .++|+++-+. .+..++.. .+..............++
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~-~g~~liv~~~-~~Gvh~~~-~~~~~~~~~~~~a~~~GA 170 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDD-WGVPLLAMMY-PRGPHIDD-RDPELVAHAARLGAELGA 170 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHH-cCCCEEEEEe-ccCccccc-ccHHHHHHHHHHHHHHCC
Confidence 4566778899987766443 11 3344555555555 5899888443 22223322 222222221111234577
Q ss_pred eEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCC
Q psy15811 485 QAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEV 560 (581)
Q Consensus 485 ~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt 560 (581)
+.|++.-. .=...++++.... ++|+.+ +|.+-. .+.+++.+.+.+.++.|+. |=|+|.
T Consensus 171 Dyikt~~~---~~~~~l~~~~~~~-~iPVva---~GGi~~---------~~~~~~~~~i~~~~~aGa~--Gia~g~ 228 (258)
T TIGR01949 171 DIVKTPYT---GDIDSFRDVVKGC-PAPVVV---AGGPKT---------NSDREFLQMIKDAMEAGAA--GVAVGR 228 (258)
T ss_pred CEEeccCC---CCHHHHHHHHHhC-CCcEEE---ecCCCC---------CCHHHHHHHHHHHHHcCCc--EEehhh
Confidence 88887631 1235566666544 578755 243321 1255778888888899987 666663
No 220
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=72.56 E-value=70 Score=33.34 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeccc----------CC---------------HHHHHHHHHHHHhcC--CCeEEEEE
Q psy15811 403 EADLIAWHRPNVEALVRAGVDYLALETI----------PA---------------EKEALALVKLLREFP--GQKAWLSF 455 (581)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~gvD~i~~ET~----------p~---------------~~Ea~a~~~~~~~~~--~~pv~iSf 455 (581)
.+++.+.|.+.++.+.++|.|.|=+=.- |. ..-...+++++++.. +.|+.+-+
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 3566778888888888999999855321 10 122356666666543 56777666
Q ss_pred EEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 456 SCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 456 t~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
+.. .....|.+.++++..+..+...+++.|-+..
T Consensus 216 s~~--~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 216 SAD--DFVPGGLTLEEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred chh--ccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 542 2334566777766655444555678776655
No 221
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=72.52 E-value=1.1e+02 Score=31.22 Aligned_cols=162 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhcccccccc-----------ccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccc
Q psy15811 40 EPEACVETHRDFIRAGADIIQSS-----------CYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLN 108 (581)
Q Consensus 40 ~Pe~v~~iH~~yl~AGAdiI~Tn-----------Tf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~ 108 (581)
++|.-.++-+...++|||+|+-- +-|....+--+.|++ .+...++.++++.+....
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~-------~~~~~~~~~~ir~~~~~~------ 88 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFT-------LEKIFELVKEIRKKEPDI------ 88 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHCTSS------
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-------HHHHHHHHHHHhccCCCC------
Q ss_pred ccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHH
Q psy15811 109 KTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAW-HRPNVEALVRAGVDYLALETIPAEKEALALVKLL 187 (581)
Q Consensus 109 ~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~-~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~ 187 (581)
++++. .=++.+..+ ..+-++.+.++|||.+++--+| .+|......++
T Consensus 89 --------pivlm-----------------------~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~ 136 (259)
T PF00290_consen 89 --------PIVLM-----------------------TYYNPIFQYGIERFFKEAKEAGVDGLIIPDLP-PEESEELREAA 136 (259)
T ss_dssp --------EEEEE-----------------------E-HHHHHHH-HHHHHHHHHHHTEEEEEETTSB-GGGHHHHHHHH
T ss_pred --------CEEEE-----------------------eeccHHhccchHHHHHHHHHcCCCEEEEcCCC-hHHHHHHHHHH
Q ss_pred HhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC--------hhhHHHHHHHHHhhCCCCceEE
Q psy15811 188 REFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR--------PSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 188 ~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~--------p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
++. ++..+- +..-++..+-+..+.+ ...-..+-+-=.| +..+.+.++.+++. +++|+.+
T Consensus 137 ~~~-gl~~I~---------lv~p~t~~~Ri~~i~~--~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~-~~~Pv~v 203 (259)
T PF00290_consen 137 KKH-GLDLIP---------LVAPTTPEERIKKIAK--QASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKH-TDLPVAV 203 (259)
T ss_dssp HHT-T-EEEE---------EEETTS-HHHHHHHHH--H-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHT-TSS-EEE
T ss_pred HHc-CCeEEE---------EECCCCCHHHHHHHHH--hCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhh-cCcceEE
No 222
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=72.45 E-value=39 Score=35.63 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=67.9
Q ss_pred CceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEE
Q psy15811 373 SSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAW 452 (581)
Q Consensus 373 ~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~ 452 (581)
+.+|+++++ +| .|. .+.++. .+...+.+.++|+|.+=+|.-. .+...+++.+-+ .++||+
T Consensus 96 ~a~vVaDmP-fg-----------SY~--~s~e~a---v~nA~rl~~eaGa~aVKlEGg~--~~~~~~I~~l~~-~GIPV~ 155 (332)
T PLN02424 96 RPLLVGDLP-FG-----------SYE--SSTDQA---VESAVRMLKEGGMDAVKLEGGS--PSRVTAAKAIVE-AGIAVM 155 (332)
T ss_pred CCEEEeCCC-CC-----------CCC--CCHHHH---HHHHHHHHHHhCCcEEEECCCc--HHHHHHHHHHHH-cCCCEE
Confidence 467887774 33 443 344443 4445555567999999999753 233344444444 699999
Q ss_pred EEEEEcCC------CcCCCCCcHH---HHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEE
Q psy15811 453 LSFSCKDD------THTSHGELIS---SAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIV 515 (581)
Q Consensus 453 iSft~~~~------~~l~~G~~~~---~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ 515 (581)
-|+=+.+. |.-..|.+-+ ++++..+.+...++.+|=+-|+... +.+.+.... ++|.+-
T Consensus 156 gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~----la~~It~~l-~IPtIG 222 (332)
T PLN02424 156 GHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP----VAAAITSAL-QIPTIG 222 (332)
T ss_pred EeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH----HHHHHHHhC-CCCEEe
Confidence 66644332 1112344433 4444444455678899999995444 334454443 467554
No 223
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=72.37 E-value=66 Score=33.41 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCCEEEecccC--------------CHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHH
Q psy15811 412 PNVEALVRAGVDYLALETIP--------------AEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSC 476 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p--------------~~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l 476 (581)
..++.+.++||-.|.+|+.. +..|...=++++++- .+.+++|-- |.+..... .+++++++.
T Consensus 97 r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiA--RTDa~~~~--g~deAI~Ra 172 (292)
T PRK11320 97 RTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMA--RTDALAVE--GLDAAIERA 172 (292)
T ss_pred HHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEE--ecCccccc--CHHHHHHHH
Confidence 55777888999999999853 355666656655532 355555544 43444333 489999998
Q ss_pred HhhCCCCceEEEECC-CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 477 LLANPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 477 ~~~~~~~~~~iGiNC-~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
+.....++++|-+-+ .+++.+.. +.... +.|+++-+-
T Consensus 173 ~aY~eAGAD~ifi~~~~~~~~i~~----~~~~~-~~Pl~~n~~ 210 (292)
T PRK11320 173 QAYVEAGADMIFPEAMTELEMYRR----FADAV-KVPILANIT 210 (292)
T ss_pred HHHHHcCCCEEEecCCCCHHHHHH----HHHhc-CCCEEEEec
Confidence 777778889887776 33444433 33333 468755443
No 224
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=72.30 E-value=84 Score=32.97 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=33.7
Q ss_pred CcCHHHHHHHHHHHHHcCCcEEeecCC----CchHHHHHHHHHHhcc
Q psy15811 533 TEDEYSILHYVPQWLEEGVNIIGGCCE----VTSYEIQQMRIMIDEF 575 (581)
Q Consensus 533 ~~~~~~~~~~~~~w~~~G~~iiGGCCG----t~P~hI~al~~~l~~~ 575 (581)
..++++..+.+++.++.|.-|+.-=|| |.+++|+++-+.++.+
T Consensus 290 ~gt~eeI~~~v~~~l~~g~~Il~~gcgi~~~tp~enl~a~v~a~~~~ 336 (339)
T PRK06252 290 NGTPEKVKAEAKKCLEDGVDILAPGCGIAPKTPLENIKAMVEARKEY 336 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 345888999999999988767765565 5689999999888764
No 225
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=72.19 E-value=27 Score=37.18 Aligned_cols=100 Identities=25% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCC
Q psy15811 52 IRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVL 131 (581)
Q Consensus 52 l~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~ 131 (581)
+++|||.|-.---..+..... ..++.++ .++++++|++. ++ +++|+...=+...-+
T Consensus 23 i~~GADaVY~G~~~~~~R~~a-~nfs~~~----l~e~i~~ah~~--------------gk-----k~~V~~N~~~~~~~~ 78 (347)
T COG0826 23 IAAGADAVYIGEKEFGLRRRA-LNFSVED----LAEAVELAHSA--------------GK-----KVYVAVNTLLHNDEL 78 (347)
T ss_pred HHcCCCEEEeCCccccccccc-ccCCHHH----HHHHHHHHHHc--------------CC-----eEEEEeccccccchh
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc-CCCcEEEEEEEc
Q psy15811 132 RDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF-PGQKAWLSFSCK 202 (581)
Q Consensus 132 ~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~-~~~pv~isft~~ 202 (581)
.. ..+.++.|.+.|||.|++=- .+++..+++. |++|+.+|-...
T Consensus 79 ~~--------------------~~~~l~~l~e~GvDaviv~D-------pg~i~l~~e~~p~l~ih~S~q~~ 123 (347)
T COG0826 79 ET--------------------LERYLDRLVELGVDAVIVAD-------PGLIMLARERGPDLPIHVSTQAN 123 (347)
T ss_pred hH--------------------HHHHHHHHHHcCCCEEEEcC-------HHHHHHHHHhCCCCcEEEeeeEe
No 226
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=72.16 E-value=49 Score=32.60 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=58.1
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcC------CCCCcHHHHHHHHHhhCCCCce
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHT------SHGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l------~~G~~~~~~~~~l~~~~~~~~~ 485 (581)
++++.+.+.|+|.+++-+.+ +.+...+.++++++...++++|+.++..... ....++.+.++.+. ..++.
T Consensus 86 e~~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ga~ 161 (234)
T cd04732 86 EDIERLLDLGVSRVIIGTAA-VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFE---ELGVK 161 (234)
T ss_pred HHHHHHHHcCCCEEEECchH-HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHH---HcCCC
Confidence 66777777899999887655 3455566666666544588999887654221 12345666666663 22334
Q ss_pred EEEECCCCC-----ccchHHHHHHHhhCCCCeEEE
Q psy15811 486 AIGVNCVRP-----SHVSTLVRCIKQSHPTVQTIV 515 (581)
Q Consensus 486 ~iGiNC~~p-----~~~~~~l~~l~~~~~~~pl~~ 515 (581)
.|-+..... ..-..+++++++.. ++|+++
T Consensus 162 ~iii~~~~~~g~~~g~~~~~i~~i~~~~-~ipvi~ 195 (234)
T cd04732 162 AIIYTDISRDGTLSGPNFELYKELAAAT-GIPVIA 195 (234)
T ss_pred EEEEEeecCCCccCCCCHHHHHHHHHhc-CCCEEE
Confidence 443432111 12245677777655 577544
No 227
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=72.14 E-value=31 Score=36.17 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=40.5
Q ss_pred HHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCC--CHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 158 VEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGE--LISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~--~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
++.+.+.|+|.+-++.-.++.|++. ...+ .+.+.--+++.+.+..|+ .+.+.+..+.+ .+...+...|
T Consensus 237 l~~~~~~g~d~~~~d~~~dl~e~~~------~~g~-~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~---~g~~Il~~Gc 306 (326)
T cd03307 237 LEYIAQCGFDGISVDEKVDVKTAKE------IVGG-RAALIGNVSPSQTLLNGTPEDVKAEARKCLE---DGVDILAPGC 306 (326)
T ss_pred HHHHHHcCCCeecccccCCHHHHHH------HcCC-ceEEEeCCChHHHhcCCCHHHHHHHHHHHHH---ccCCEecCcC
Confidence 5667778999999888888877642 2221 233444444433344443 24444444443 3447888889
Q ss_pred C
Q psy15811 236 V 236 (581)
Q Consensus 236 ~ 236 (581)
.
T Consensus 307 ~ 307 (326)
T cd03307 307 G 307 (326)
T ss_pred C
Confidence 6
No 228
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=72.05 E-value=80 Score=30.44 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEEC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 490 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiN 490 (581)
+.++.+ +.|+|.|=+-|--.......+++.+++. ++..+.+.+-+.+.+. ..++.+ ...+++.|-+.
T Consensus 16 ~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~--------~~~~~~---~~~Gad~i~vh 83 (206)
T TIGR03128 16 ELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE--------YEAEQA---FAAGADIVTVL 83 (206)
T ss_pred HHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH--------HHHHHH---HHcCCCEEEEe
Confidence 456666 6788865332112234445666677653 5667777764433221 122333 23466777788
Q ss_pred CC-CCccchHHHHHHHhhCCCCeEEEe-eCC
Q psy15811 491 CV-RPSHVSTLVRCIKQSHPTVQTIVY-PNK 519 (581)
Q Consensus 491 C~-~p~~~~~~l~~l~~~~~~~pl~~y-pNa 519 (581)
|. ++..+..+++..++. +.++++- +|.
T Consensus 84 ~~~~~~~~~~~i~~~~~~--g~~~~~~~~~~ 112 (206)
T TIGR03128 84 GVADDATIKGAVKAAKKH--GKEVQVDLINV 112 (206)
T ss_pred ccCCHHHHHHHHHHHHHc--CCEEEEEecCC
Confidence 84 334456677776665 4666654 454
No 229
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=71.81 E-value=39 Score=35.68 Aligned_cols=90 Identities=11% Similarity=0.195 Sum_probs=57.3
Q ss_pred HHHHHHHHhCCC--CEEEec-ccCCHHHHHHHHHHHHh-cCCCeEEEE-EEEcCCCcCCCCCcHHHHHHHHHhhCCCCce
Q psy15811 411 RPNVEALVRAGV--DYLALE-TIPAEKEALALVKLLRE-FPGQKAWLS-FSCKDDTHTSHGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 411 ~~~~~~l~~~gv--D~i~~E-T~p~~~Ea~a~~~~~~~-~~~~pv~iS-ft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~ 485 (581)
.+++..|+++|+ |+|.+- |.++...+..+++.+++ +++.||+.. ++ +.+++...+ ..+++
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-----------t~e~a~~l~----~aGad 163 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-----------TPEAVRELE----NAGAD 163 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-----------CHHHHHHHH----HcCcC
Confidence 388999999965 999985 66777777778888885 456888863 32 455555543 34556
Q ss_pred EE------EECCCC--------CccchHHHHHHHhhCCCCeEEEe
Q psy15811 486 AI------GVNCVR--------PSHVSTLVRCIKQSHPTVQTIVY 516 (581)
Q Consensus 486 ~i------GiNC~~--------p~~~~~~l~~l~~~~~~~pl~~y 516 (581)
++ |-||.. |..-..+++++.... .+|+++-
T Consensus 164 ~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~-~ipVIAd 207 (326)
T PRK05458 164 ATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-RKPIIAD 207 (326)
T ss_pred EEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc-CCCEEEe
Confidence 65 566732 212334566666554 5776643
No 230
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=71.76 E-value=35 Score=33.76 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=64.5
Q ss_pred HHHHHHCCCcEEEEEc-cCC--------------HHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHh
Q psy15811 158 VEALVRAGVDYLALET-IPA--------------EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 222 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET-~~~--------------~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~ 222 (581)
++.+.+.|+|.+-+-. .++ ++++..+++.+|+. +..+ +|++.+..+.. -+.+.+.++.+.+
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~-g~~v--~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKEL-GYEV--AFGCEDASRTD-PEELLELAEALAE 148 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT-TSEE--EEEETTTGGSS-HHHHHHHHHHHHH
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCce--EeCcccccccc-HHHHHHHHHHHHH
Confidence 3456679999986654 455 67777888888875 5555 77777654442 2344455555543
Q ss_pred hCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEec
Q psy15811 223 ANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 223 ~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~p 261 (581)
.+++.|.+.=+ .|..+..+++.+++...+.||.+..
T Consensus 149 ---~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~ 188 (237)
T PF00682_consen 149 ---AGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHA 188 (237)
T ss_dssp ---HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred ---cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEe
Confidence 57888877643 5999999999999864446676653
No 231
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=71.71 E-value=63 Score=33.34 Aligned_cols=182 Identities=15% Similarity=0.082 Sum_probs=102.4
Q ss_pred ceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----EecccCC--HHHHHHHHHHHHhc
Q psy15811 374 SQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYL-----ALETIPA--EKEALALVKLLREF 446 (581)
Q Consensus 374 v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i-----~~ET~p~--~~Ea~a~~~~~~~~ 446 (581)
.+++|..+ ....++. |...-+.+.+.+|-+..++.+.+ .|.++ +||..-. +.-.+.+++.+++
T Consensus 15 ~lcvGlDP-~~~~l~~-------~~~~~~~~~~~~f~~~ivd~~~~-~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~- 84 (278)
T PRK00125 15 SLCVGLDP-HPSLLPA-------WGLSGDADGLFEFCRIIVDATAD-LVAAFKPQIAYFEAHGAEGLAQLERTIAYLRE- 84 (278)
T ss_pred CEEEEECC-ChHhccc-------ccccccHHHHHHHHHHHHHhcCC-cccEEeccHHHHHhcCchhhhHHHHHHHHHHH-
Confidence 37887766 3333332 22234567888888888888764 34443 4454421 2223446777776
Q ss_pred CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhC-CCCceEEEECC-CCCccchHHHHHHHhhCCCCeEEE-eeCCCC-C
Q psy15811 447 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLAN-PDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIV-YPNKGG-V 522 (581)
Q Consensus 447 ~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~-~~~~~~iGiNC-~~p~~~~~~l~~l~~~~~~~pl~~-ypNag~-~ 522 (581)
.++||++-+-..| .|++....++++ .. ..+++++-||+ .+.+.+.++++.....+..+.+.+ ..|.+. .
T Consensus 85 ~g~~VilD~K~~D-----I~nTv~~ya~a~--~~~~~g~DavTVhp~~G~d~l~~~~~~~~~~~k~vfVlvlTSnp~s~~ 157 (278)
T PRK00125 85 AGVLVIADAKRGD-----IGSTAEAYAKAA--FESPLEADAVTVSPYMGFDSLEPYLEYAEEHGKGVFVLCRTSNPGGSD 157 (278)
T ss_pred CCCcEEEEeecCC-----hHHHHHHHHHHH--hcCccCCcEEEECCcCCHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 4888887664433 366777777877 22 46889999999 677778777776655432223222 345441 1
Q ss_pred cccccccc-cCCcCHHHHHHHHHHHHH---cCCcEEe-ecCCCchHHHHHHHHHHhc
Q psy15811 523 WDSVHMKW-LDTEDEYSILHYVPQWLE---EGVNIIG-GCCEVTSYEIQQMRIMIDE 574 (581)
Q Consensus 523 ~~~~~~~~-~~~~~~~~~~~~~~~w~~---~G~~iiG-GCCGt~P~hI~al~~~l~~ 574 (581)
+.. ... ....-.+.+.+.+.+|.+ ...-.+| ==|.|-|++++.||+.+.+
T Consensus 158 lq~--~~~~~~~~l~~~V~~~a~~~~~~~~~~~g~~G~VVgaT~p~e~~~iR~~~~~ 212 (278)
T PRK00125 158 LQF--LRTADGRPLYQHVADLAAALNNLGNCGYGSIGLVVGATFPPELAAVRKILGG 212 (278)
T ss_pred HHh--hhccCCCcHHHHHHHHHHHHhccccCCCCCCEEEECCCCHHHHHHHHHhCCC
Confidence 110 001 010002344556655554 1122244 3445779999999988643
No 232
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=71.67 E-value=25 Score=36.61 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEE
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSC 201 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~ 201 (581)
--+|++.+.++|+|.+++|...+.+|++...+.+ +.|+++.+..
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~----~~P~~~nv~~ 210 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEI----DAPLLANMVE 210 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhc----CCCeeEEEEe
Confidence 4567999999999999999999999988777654 4688766654
No 233
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=71.49 E-value=25 Score=34.62 Aligned_cols=88 Identities=23% Similarity=0.339 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCCEEEeccc----CCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEE
Q psy15811 412 PNVEALVRAGVDYLALETI----PAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 487 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~----p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~i 487 (581)
++++.+.++|+|+|++-.- |...+...+++.+++..++|+++.. .+.+++... ...+++.|
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v-----------~t~ee~~~a----~~~G~d~i 143 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC-----------STLEEGLAA----QKLGFDFI 143 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC-----------CCHHHHHHH----HHcCCCEE
Confidence 6788889999998776321 2225667777788763467776533 245555433 24467788
Q ss_pred EECCC---C-----CccchHHHHHHHhhCCCCeEEE
Q psy15811 488 GVNCV---R-----PSHVSTLVRCIKQSHPTVQTIV 515 (581)
Q Consensus 488 GiNC~---~-----p~~~~~~l~~l~~~~~~~pl~~ 515 (581)
++|-. + ......++++++... ++|+++
T Consensus 144 ~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-~iPvia 178 (221)
T PRK01130 144 GTTLSGYTEETKKPEEPDFALLKELLKAV-GCPVIA 178 (221)
T ss_pred EcCCceeecCCCCCCCcCHHHHHHHHHhC-CCCEEE
Confidence 77531 1 112346777777765 578664
No 234
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=71.48 E-value=86 Score=31.82 Aligned_cols=159 Identities=11% Similarity=0.106 Sum_probs=93.3
Q ss_pred cCCChHHHHHHHHHHHHhccccccccccc--cccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccccccccc
Q psy15811 37 LTTEPEACVETHRDFIRAGADIIQSSCYQ--ANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLL 114 (581)
Q Consensus 37 ~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~--a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~ 114 (581)
.++.+|.+.++-+.--++|+.+|.--.|- .++.++...|. ++.+..+++++++
T Consensus 24 ~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~----------~gl~~L~~~~~~~--------------- 78 (250)
T PRK13397 24 SIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGL----------QGIRYLHEVCQEF--------------- 78 (250)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCH----------HHHHHHHHHHHHc---------------
Confidence 58999999999999889999999988885 33333332232 3566677777663
Q ss_pred CCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCc
Q psy15811 115 TGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQK 194 (581)
Q Consensus 115 ~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p 194 (581)
.+-+.-+ .. ..++++.+.+ .||++-+=.+.-.. ...++++.+. ++|
T Consensus 79 --Gl~~~Te--------------------v~--------d~~~v~~~~e-~vdilqIgs~~~~n--~~LL~~va~t-gkP 124 (250)
T PRK13397 79 --GLLSVSE--------------------IM--------SERQLEEAYD-YLDVIQVGARNMQN--FEFLKTLSHI-DKP 124 (250)
T ss_pred --CCCEEEe--------------------eC--------CHHHHHHHHh-cCCEEEECcccccC--HHHHHHHHcc-CCe
Confidence 1111100 01 2345677767 69999876554332 3344555553 899
Q ss_pred EEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeC-CC-C-hhhH-----HHHHHHHHhhCCCCceEEecC
Q psy15811 195 AWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN-CV-R-PSHV-----STLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 195 v~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvN-C~-~-p~~~-----~~~l~~l~~~~~~~p~~~~pn 262 (581)
|++| .|...+-..+..+++.+.. ......+..- |+ + |... ...+..+++. ...|+++-|.
T Consensus 125 Vilk-----~G~~~t~~e~~~A~e~i~~--~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~-~~lPVivd~S 192 (250)
T PRK13397 125 ILFK-----RGLMATIEEYLGALSYLQD--TGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQK-TDLPIIVDVS 192 (250)
T ss_pred EEEe-----CCCCCCHHHHHHHHHHHHH--cCCCeEEEEccccCCCCCccccccCHHHHHHHHHH-hCCCeEECCC
Confidence 9983 3444445556666666654 2333555555 74 2 3221 2455555553 4567666444
No 235
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.45 E-value=70 Score=31.99 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=64.9
Q ss_pred HHHHHHHhCCCCEEEecccCC---------------HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHH
Q psy15811 412 PNVEALVRAGVDYLALETIPA---------------EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSC 476 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~---------------~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l 476 (581)
+.++.+.++|+|.|.+=.-.+ ..+++.+++.+++ .++++.+++..-.+. ..++....+.+
T Consensus 78 ~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~G~~v~~~~~~~~~~----~~~~~~l~~~~ 152 (265)
T cd03174 78 KGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE-AGLEVEGSLEDAFGC----KTDPEYVLEVA 152 (265)
T ss_pred hhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEeecCC----CCCHHHHHHHH
Confidence 567777888999986665444 6777777888887 588888888432111 13444333333
Q ss_pred HhhCCCCceEEEECC----CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 477 LLANPDQIQAIGVNC----VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 477 ~~~~~~~~~~iGiNC----~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
......+++.|.+.= ..|+.+..+++.+++..+++|+.+...
T Consensus 153 ~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~H 198 (265)
T cd03174 153 KALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTH 198 (265)
T ss_pred HHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 222334555555433 478889999999988764478877664
No 236
>PLN02389 biotin synthase
Probab=71.29 E-value=1.3e+02 Score=32.44 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=13.8
Q ss_pred HHHHHHHHCCCcEE--EEEc
Q psy15811 156 PNVEALVRAGVDYL--ALET 173 (581)
Q Consensus 156 ~q~~~l~~~gvD~l--~~ET 173 (581)
++++.|.++|+|.+ .+||
T Consensus 179 E~l~~LkeAGld~~~~~LeT 198 (379)
T PLN02389 179 EQAAQLKEAGLTAYNHNLDT 198 (379)
T ss_pred HHHHHHHHcCCCEEEeeecC
Confidence 56788889999975 4565
No 237
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=71.17 E-value=66 Score=30.93 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEE-----ccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCC
Q psy15811 152 AWHRPNVEALVRAGVDYLALE-----TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPD 226 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~E-----T~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~ 226 (581)
....++++.+.++|+|.|=+= .++....-..+++.+++.++.|+.+-+.+.+ ..+.+..+. ..
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~---------~~~~~~~~~---~~ 78 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVEN---------PDRYIEDFA---EA 78 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCC---------HHHHHHHHH---Hc
Confidence 456788999999999998773 3344434445556665545677655344432 234444443 46
Q ss_pred CceEEEeCCCChhhHHHHHHHHHhh
Q psy15811 227 QIQAIGVNCVRPSHVSTLVRCIKQS 251 (581)
Q Consensus 227 ~~~~vGvNC~~p~~~~~~l~~l~~~ 251 (581)
++++|-+=...++.+...++.+++.
T Consensus 79 gadgv~vh~~~~~~~~~~~~~~~~~ 103 (210)
T TIGR01163 79 GADIITVHPEASEHIHRLLQLIKDL 103 (210)
T ss_pred CCCEEEEccCCchhHHHHHHHHHHc
Confidence 7787666554456666777777663
No 238
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=70.84 E-value=58 Score=37.30 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=64.6
Q ss_pred HHHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 413 NVEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 413 ~~~~l~~~gvD~i-~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
-++...++|+|.| +|-.+.++..++.+++.+++ .+..+-.++++..... -+-+.+.+.++.+ ...+++.|.|--
T Consensus 102 ~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~-~G~~~~~~i~yt~~p~-~~~~~~~~~a~~l---~~~Gad~i~i~D 176 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMNDPRNLETALKAVRK-VGAHAQGTLSYTTSPV-HTLQTWVDLAKQL---EDMGVDSLCIKD 176 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHH-cCCeEEEEEEEeeCCc-cCHHHHHHHHHHH---HHcCCCEEEECC
Confidence 3445667899987 45566668888889999998 4776544444321111 0112344555555 345677776655
Q ss_pred ----CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 492 ----VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 492 ----~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
..|..+..+++.++... ++|+.+.-.
T Consensus 177 t~G~l~P~~~~~lv~~lk~~~-~~pi~~H~H 206 (593)
T PRK14040 177 MAGLLKPYAAYELVSRIKKRV-DVPLHLHCH 206 (593)
T ss_pred CCCCcCHHHHHHHHHHHHHhc-CCeEEEEEC
Confidence 36888999999998876 588877664
No 239
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=70.70 E-value=83 Score=33.11 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=69.1
Q ss_pred HHHHHHHhCCCCEEEecccCCH-------------HH--------------HHHHHHHHHhc--CCCeEEEEEEEcCCCc
Q psy15811 412 PNVEALVRAGVDYLALETIPAE-------------KE--------------ALALVKLLREF--PGQKAWLSFSCKDDTH 462 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~-------------~E--------------a~a~~~~~~~~--~~~pv~iSft~~~~~~ 462 (581)
+.++.+.+.|+.++..=|+... .+ ....++.+++. .+.|+++|+...+...
T Consensus 63 ~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~ 142 (327)
T cd04738 63 EAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTP 142 (327)
T ss_pred HHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCc
Confidence 4455556678888777666531 01 22234444432 3789999997654322
Q ss_pred CCCCCcHHHHHHHHHhhCCCCceEEEECCCCCc-----------cchHHHHHHHhhCC----CCeEEEeeCCCCCccccc
Q psy15811 463 TSHGELISSAVTSCLLANPDQIQAIGVNCVRPS-----------HVSTLVRCIKQSHP----TVQTIVYPNKGGVWDSVH 527 (581)
Q Consensus 463 l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~-----------~~~~~l~~l~~~~~----~~pl~~ypNag~~~~~~~ 527 (581)
+ -...++.++.+... ...+++|-+|+..|. .+.++++.++.... ++|+++.-...
T Consensus 143 ~--~~~~~d~~~~~~~~-~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~------- 212 (327)
T cd04738 143 L--EDAVEDYVIGVRKL-GPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD------- 212 (327)
T ss_pred c--cccHHHHHHHHHHH-HhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-------
Confidence 1 22344444444222 224688889986553 35567777766541 37888776421
Q ss_pred ccccCCcCHHHHHHHHHHHHHcCCc
Q psy15811 528 MKWLDTEDEYSILHYVPQWLEEGVN 552 (581)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~w~~~G~~ 552 (581)
| +.+++.+.++...+.|+.
T Consensus 213 --~----~~~~~~~ia~~l~~aGad 231 (327)
T cd04738 213 --L----SDEELEDIADVALEHGVD 231 (327)
T ss_pred --C----CHHHHHHHHHHHHHcCCc
Confidence 1 123455666666666653
No 240
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.31 E-value=83 Score=30.81 Aligned_cols=103 Identities=10% Similarity=0.108 Sum_probs=60.6
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
++++...++|++||+= |... ..+++..++ .++|++. .-.++.|++.++ .. +.+.|=+-=
T Consensus 67 e~a~~ai~aGA~FivS---P~~~--~~vi~~a~~-~~i~~iP-----------G~~TptEi~~A~--~~--Ga~~vK~FP 125 (201)
T PRK06015 67 KQFEDAAKAGSRFIVS---PGTT--QELLAAAND-SDVPLLP-----------GAATPSEVMALR--EE--GYTVLKFFP 125 (201)
T ss_pred HHHHHHHHcCCCEEEC---CCCC--HHHHHHHHH-cCCCEeC-----------CCCCHHHHHHHH--HC--CCCEEEECC
Confidence 7888889999999984 3332 345556666 5888883 335677888876 22 333333221
Q ss_pred CCCccc--hHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEee
Q psy15811 492 VRPSHV--STLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGG 556 (581)
Q Consensus 492 ~~p~~~--~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGG 556 (581)
-+.+ ...+|.|+.-.++.|++ |-.|-.. +.+.+|++.|+...||
T Consensus 126 --a~~~GG~~yikal~~plp~~~l~--ptGGV~~-----------------~n~~~~l~ag~~~~~g 171 (201)
T PRK06015 126 --AEQAGGAAFLKALSSPLAGTFFC--PTGGISL-----------------KNARDYLSLPNVVCVG 171 (201)
T ss_pred --chhhCCHHHHHHHHhhCCCCcEE--ecCCCCH-----------------HHHHHHHhCCCeEEEE
Confidence 1122 34556666533345544 6555221 2357899998666555
No 241
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=70.20 E-value=34 Score=38.34 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=38.1
Q ss_pred HHHHHHHCCCcEEEEE--------c-------cCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHH
Q psy15811 157 NVEALVRAGVDYLALE--------T-------IPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCL 221 (581)
Q Consensus 157 q~~~l~~~gvD~l~~E--------T-------~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~ 221 (581)
+++.++++|+|+|.+- | .|.+.-+..+.+++++. ++|+|. +|-..++. ++++++
T Consensus 295 ~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~-~v~vIa------dGGi~~~~---di~kAl- 363 (495)
T PTZ00314 295 QAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER-GVPCIA------DGGIKNSG---DICKAL- 363 (495)
T ss_pred HHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc-CCeEEe------cCCCCCHH---HHHHHH-
Confidence 4677889999999641 2 24444444555666654 788886 44444444 444444
Q ss_pred hhCCCCceEEEeCC
Q psy15811 222 LANPDQIQAIGVNC 235 (581)
Q Consensus 222 ~~~~~~~~~vGvNC 235 (581)
..|+++|.+-=
T Consensus 364 ---a~GA~~Vm~G~ 374 (495)
T PTZ00314 364 ---ALGADCVMLGS 374 (495)
T ss_pred ---HcCCCEEEECc
Confidence 25666665543
No 242
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=70.07 E-value=1.4e+02 Score=30.96 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCceEEecCCC
Q psy15811 213 ISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKG 264 (581)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~~~~pnag 264 (581)
..+.+..+.+ .+-..-.+||...+.+..+++.... .+.|++++-..+
T Consensus 6 ~~~~l~~A~~---~~yav~AfN~~n~e~~~avi~aAe~--~~sPvIlq~s~~ 52 (293)
T PRK07315 6 AEKFVQAARD---NGYAVGGFNTNNLEWTQAILRAAEA--KKAPVLIQTSMG 52 (293)
T ss_pred HHHHHHHHHH---CCceEEEEEECCHHHHHHHHHHHHH--HCCCEEEEcCcc
Confidence 4455555543 3334456888888888888887776 467888887666
No 243
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=70.02 E-value=57 Score=33.46 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec-ccC-----CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHH
Q psy15811 400 SMTEADLIAWHRPNVEALVRAGVDYLALE-TIP-----AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAV 473 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~gvD~i~~E-T~p-----~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~ 473 (581)
.++.+.+ +.+++.+.+.|||.|++= |.. +..|-+.+++.+.+..+ ++++... ..+..+++
T Consensus 16 ~iD~~~~----~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg---------~~~~~~ai 81 (279)
T cd00953 16 KIDKEKF----KKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG---------SLNLEESI 81 (279)
T ss_pred CcCHHHH----HHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC---------cCCHHHHH
Confidence 3555444 456777778999998762 222 26777788877766444 4555542 24567777
Q ss_pred HHHHhhCCCCceEEEECC---CC---CccchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 474 TSCLLANPDQIQAIGVNC---VR---PSHVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 474 ~~l~~~~~~~~~~iGiNC---~~---p~~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
+..+.....+++++.+-- .. ++.+....+.+.. +.|+++|-|-
T Consensus 82 ~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~---~lpv~iYn~P 130 (279)
T cd00953 82 ELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS---PYPTFIYNYP 130 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh---cCCEEEEeCc
Confidence 777655667778666532 11 1233344455555 5899999653
No 244
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=69.92 E-value=18 Score=39.03 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=38.6
Q ss_pred hcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChh----------------hHHHHHHHHHhhC
Q psy15811 189 EFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPS----------------HVSTLVRCIKQSH 252 (581)
Q Consensus 189 ~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~----------------~~~~~l~~l~~~~ 252 (581)
+.++.|+++|+.... . =+.+.+.+..+. ..++++|=+|-++|. .+.++++.++..
T Consensus 110 ~~~~~pvIaSi~~~~---s--~~~~~~~a~~~e---~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~- 180 (385)
T PLN02495 110 EYPDRILIASIMEEY---N--KDAWEEIIERVE---ETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK- 180 (385)
T ss_pred hCCCCcEEEEccCCC---C--HHHHHHHHHHHH---hcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-
Confidence 446789999874210 0 122334444443 467889888875443 355666777664
Q ss_pred CCCceEEec
Q psy15811 253 PTVQTIVYP 261 (581)
Q Consensus 253 ~~~p~~~~p 261 (581)
.++|++++.
T Consensus 181 ~~iPv~vKL 189 (385)
T PLN02495 181 ATVPVWAKM 189 (385)
T ss_pred hcCceEEEe
Confidence 678888773
No 245
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=69.50 E-value=82 Score=32.31 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=58.0
Q ss_pred HHHHHHCCCcEEEEEccCCH---------------HHHHHHHHHHHhcCCCcEEE----EEEEcCCCcCCCCCCHHHHHH
Q psy15811 158 VEALVRAGVDYLALETIPAE---------------KEALALVKLLREFPGQKAWL----SFSCKDDTHTSHGELISSAVT 218 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET~~~~---------------~E~~aa~~a~~~~~~~pv~i----sft~~~~g~l~~G~~~~~~~~ 218 (581)
++..++.|+|.|-+-.-.+- +.++.+++.+|+. +..+.+ +|.++..++. +-..+.+.+.
T Consensus 79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~-G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~ 156 (274)
T cd07938 79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAA-GLRVRGYVSTAFGCPYEGEV-PPERVAEVAE 156 (274)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeEecCCCCCCC-CHHHHHHHHH
Confidence 56666889998766543332 3344456666664 555544 3444444443 2222333444
Q ss_pred HHHhhCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 219 SCLLANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 219 ~~~~~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
.+. ..|++.|.+-=+ .|..+..+++.++...+++||.+.
T Consensus 157 ~~~---~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H 199 (274)
T cd07938 157 RLL---DLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALH 199 (274)
T ss_pred HHH---HcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 443 477887777554 499999999999876345666655
No 246
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=69.32 E-value=26 Score=34.60 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEE
Q psy15811 408 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 487 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~i 487 (581)
+.|.+.++.+.+.|+|+|-+|--........ ....+. .+.++++|+. +-..+++-+.+.+.++.+. ..+++.+
T Consensus 75 ~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~-~~~~~~-~~~~iI~S~H--~f~~tp~~~~l~~~~~~~~---~~gadiv 147 (224)
T PF01487_consen 75 EEYLELLERAIRLGPDYIDIELDLFPDDLKS-RLAARK-GGTKIILSYH--DFEKTPSWEELIELLEEMQ---ELGADIV 147 (224)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGCCHHHHHH-HHHHHH-TTSEEEEEEE--ESS---THHHHHHHHHHHH---HTT-SEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccchhHHHH-HHHHhh-CCCeEEEEec--cCCCCCCHHHHHHHHHHHH---hcCCCeE
Confidence 4455666666667899999997743333222 333443 6899999997 2333444444666666663 3455565
Q ss_pred EECC--CCCccchHHHHHHHhhC--CCCeEEEeeCC
Q psy15811 488 GVNC--VRPSHVSTLVRCIKQSH--PTVQTIVYPNK 519 (581)
Q Consensus 488 GiNC--~~p~~~~~~l~~l~~~~--~~~pl~~ypNa 519 (581)
=+-| .++++...+++...... .+.|+++++-+
T Consensus 148 Kia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG 183 (224)
T PF01487_consen 148 KIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMG 183 (224)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEET
T ss_pred EEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcC
Confidence 5555 46666666665544332 36899999754
No 247
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=69.26 E-value=37 Score=36.22 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=65.3
Q ss_pred HHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCC----CCc---cch---HHHHHH
Q psy15811 436 ALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV----RPS---HVS---TLVRCI 504 (581)
Q Consensus 436 a~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~----~p~---~~~---~~l~~l 504 (581)
.....+.+|+. ++.|++.++-+.... |.+.+++.+.+... .+....|++||. .|+ ... ..|+.+
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~----~~~~~~~~~~~~~~-~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i 181 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLY----GYGVEEAQRAVEMI-EADALQIHLNPLQELVQPEGDRDFRGWLDNIAEI 181 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccC----CCCHHHHHHHHHhc-CCCcEEEeCccchhhcCCCCcccHHHHHHHHHHH
Confidence 44455566654 489999999775332 55556555554322 455667888882 222 333 456666
Q ss_pred HhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcE--EeecCCCchHHHHH
Q psy15811 505 KQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNI--IGGCCEVTSYEIQQ 567 (581)
Q Consensus 505 ~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~i--iGGCCGt~P~hI~a 567 (581)
+... ++|+++.-+.. .. + .+.++.+.+.|+.. |+|-+||+-..|..
T Consensus 182 ~~~~-~vPVivK~~g~----g~--------s----~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~ 229 (352)
T PRK05437 182 VSAL-PVPVIVKEVGF----GI--------S----KETAKRLADAGVKAIDVAGAGGTSWAAIEN 229 (352)
T ss_pred HHhh-CCCEEEEeCCC----CC--------c----HHHHHHHHHcCCCEEEECCCCCCCccchhh
Confidence 6654 68999886531 01 1 24456677788765 67777876554443
No 248
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=69.18 E-value=40 Score=33.32 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEEC
Q psy15811 411 RPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 490 (581)
Q Consensus 411 ~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiN 490 (581)
.+.++.+.+.++|++-+|-.. .....++..+++ .+..+++|+.- ...+++-..+.+.++.+. ..+++.+=+-
T Consensus 79 ~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~-~~~kiI~S~H~--f~~tp~~~~l~~~~~~~~---~~gadivKla 150 (225)
T cd00502 79 LELLEEALKLGPDYVDIELDS--ALLEELINSRKK-GNTKIIGSYHD--FSGTPSDEELVSRLEKMA---ALGADIVKIA 150 (225)
T ss_pred HHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHh-CCCEEEEEecc--CCCCcCHHHHHHHHHHHH---HhCCCEEEEE
Confidence 344445556679999999543 333444445544 58899999952 333333233445555552 2344554454
Q ss_pred C--CCCccchHHHHHHHhhC--CCCeEEEeeCC
Q psy15811 491 C--VRPSHVSTLVRCIKQSH--PTVQTIVYPNK 519 (581)
Q Consensus 491 C--~~p~~~~~~l~~l~~~~--~~~pl~~ypNa 519 (581)
+ .++.++..+++...... .+.|++++.-+
T Consensus 151 ~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG 183 (225)
T cd00502 151 VMANSIEDNLRLLKFTRQVKNLYDIPLIAINMG 183 (225)
T ss_pred ecCCCHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 4 45667777766554442 14688887743
No 249
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=69.16 E-value=96 Score=32.06 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=57.3
Q ss_pred HHHHHCCCcEEEEEccCC---------------HHHHHHHHHHHHhcCCCcEEEEE----EEcCCCcCCCCCCHHHHHHH
Q psy15811 159 EALVRAGVDYLALETIPA---------------EKEALALVKLLREFPGQKAWLSF----SCKDDTHTSHGELISSAVTS 219 (581)
Q Consensus 159 ~~l~~~gvD~l~~ET~~~---------------~~E~~aa~~a~~~~~~~pv~isf----t~~~~g~l~~G~~~~~~~~~ 219 (581)
+..++.|+|.+-+-.-.+ +++++.+++.+|+. ++.+.+++ .+..++++ +=..+.+.++.
T Consensus 86 e~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~-g~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~ 163 (287)
T PRK05692 86 EAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQA-GVRVRGYVSCVLGCPYEGEV-PPEAVADVAER 163 (287)
T ss_pred HHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCEEEEEEEEEecCCCCCCC-CHHHHHHHHHH
Confidence 445678999875553222 33566777888775 66655433 23444443 22223344444
Q ss_pred HHhhCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 220 CLLANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 220 ~~~~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
+. ..|++.|.+-=+ .|..+..+++.+++...++||.+.
T Consensus 164 ~~---~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H 205 (287)
T PRK05692 164 LF---ALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGH 205 (287)
T ss_pred HH---HcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 43 578887766543 499999999999975333555443
No 250
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=68.89 E-value=71 Score=31.45 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=55.9
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcC------CCCCcHHHHHHHHHhhCCCCce
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHT------SHGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l------~~G~~~~~~~~~l~~~~~~~~~ 485 (581)
++++.+.+.|+|.+++-|... .+...+.++++++...++++|+.++.+... ..+.++.+.++.+.+.....+.
T Consensus 85 ed~~~~~~~Ga~~vvlgs~~l-~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii 163 (230)
T TIGR00007 85 EDVEKLLDLGVDRVIIGTAAV-ENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGII 163 (230)
T ss_pred HHHHHHHHcCCCEEEEChHHh-hCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEE
Confidence 677788889999988766543 334556666666433668889887643211 1124556666666322112233
Q ss_pred EEEECCCCCc--cchHHHHHHHhhCCCCeEEE
Q psy15811 486 AIGVNCVRPS--HVSTLVRCIKQSHPTVQTIV 515 (581)
Q Consensus 486 ~iGiNC~~p~--~~~~~l~~l~~~~~~~pl~~ 515 (581)
...++..+.. .-..+++++.+.. ++|+++
T Consensus 164 ~~~~~~~g~~~g~~~~~i~~i~~~~-~ipvia 194 (230)
T TIGR00007 164 YTDISRDGTLSGPNFELTKELVKAV-NVPVIA 194 (230)
T ss_pred EEeecCCCCcCCCCHHHHHHHHHhC-CCCEEE
Confidence 3334442111 1245666666654 466544
No 251
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=68.74 E-value=94 Score=32.69 Aligned_cols=137 Identities=12% Similarity=0.047 Sum_probs=69.3
Q ss_pred HHHHHHHhC-CCCEEEe-cccCC---------------HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHH
Q psy15811 412 PNVEALVRA-GVDYLAL-ETIPA---------------EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVT 474 (581)
Q Consensus 412 ~~~~~l~~~-gvD~i~~-ET~p~---------------~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~ 474 (581)
+.++...++ |+|+|.+ ++..+ ..-.+-+++.+++..+.|++.+. | |.. ...+.
T Consensus 159 ~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~-c--------G~~-~~~l~ 228 (321)
T cd03309 159 KLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHS-C--------GAA-ASLVP 228 (321)
T ss_pred HHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEe-C--------CCc-HHHHH
Confidence 334444445 9999874 65443 22234566666654467766544 4 221 12233
Q ss_pred HHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHc----C
Q psy15811 475 SCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEE----G 550 (581)
Q Consensus 475 ~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~----G 550 (581)
.+. ..+++++++-... ..+ +++++.. +..+.+.-|--...-. ....++...+.+++.++. |
T Consensus 229 ~~~---e~g~dvl~~d~~~-~dl----~eak~~~-g~k~~l~GNlDp~~L~------~~~t~E~i~~~v~~~l~~~g~~~ 293 (321)
T cd03309 229 SMA---EMGVDSWNVVMTA-NNT----AELRRLL-GDKVVLAGAIDDVALD------TATWPEEDARGVAKAAAECAPIH 293 (321)
T ss_pred HHH---HcCCCEEEecCCC-CCH----HHHHHHh-CCCeEEEcCCChHHhc------CCCCHHHHHHHHHHHHHHhCCCC
Confidence 442 2244543432211 122 2223221 2235666664321111 112267788888887764 4
Q ss_pred CcEEeecCCCc----hHHHHHHHHHHh
Q psy15811 551 VNIIGGCCEVT----SYEIQQMRIMID 573 (581)
Q Consensus 551 ~~iiGGCCGt~----P~hI~al~~~l~ 573 (581)
-=|+.-+|+.. |+-+++++..+.
T Consensus 294 ~fIf~~~~~~~~~~~~~~~~~~~~~~~ 320 (321)
T cd03309 294 PFISAPTAGLPFSIFPEVLRRVSAFLD 320 (321)
T ss_pred CEEeCccCCCCcccCHHHHHHHHHhhc
Confidence 45777777754 788888887654
No 252
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=68.71 E-value=66 Score=33.92 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=67.7
Q ss_pred CCCH---HHHHHHHHHHHHHHHhCCCCEEEecc------------cCC-------------HHHHHHHHHHHHhcC--CC
Q psy15811 400 SMTE---ADLIAWHRPNVEALVRAGVDYLALET------------IPA-------------EKEALALVKLLREFP--GQ 449 (581)
Q Consensus 400 ~~~~---~~~~~~~~~~~~~l~~~gvD~i~~ET------------~p~-------------~~Ea~a~~~~~~~~~--~~ 449 (581)
.++. +++.+.|.+.++.+.++|.|.|=+-. ..+ ......+++++|+.. +.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 4655 55677888888888899999985542 111 233467777777644 56
Q ss_pred eEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEEC---CC-------CCccchHHHHHHHhhCCCCeEEE
Q psy15811 450 KAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN---CV-------RPSHVSTLVRCIKQSHPTVQTIV 515 (581)
Q Consensus 450 pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiN---C~-------~p~~~~~~l~~l~~~~~~~pl~~ 515 (581)
|+.+-++..+ ....|.++++++..+..+...+++.|-+- ++ .+......++++++.. ++|+++
T Consensus 223 ~v~vri~~~~--~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~ 295 (336)
T cd02932 223 PLFVRISATD--WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA-GIPVIA 295 (336)
T ss_pred eEEEEEcccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC-CCCEEE
Confidence 7777665432 23456677777776544444566655542 11 1122335566677665 577764
No 253
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=68.62 E-value=65 Score=32.20 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=62.2
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCc------CCCCCcHHHHHHHHHhhCCCCce
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTH------TSHGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~------l~~G~~~~~~~~~l~~~~~~~~~ 485 (581)
++++.+.+.|+|-+++-|... .+...+-++.+++.+. +++|+-.+++.. -..+.++.+.++.+. ..++.
T Consensus 89 e~v~~~l~~Ga~kvvigt~a~-~~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~---~~g~~ 163 (234)
T PRK13587 89 SQIMDYFAAGINYCIVGTKGI-QDTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLS---DIPLG 163 (234)
T ss_pred HHHHHHHHCCCCEEEECchHh-cCHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHH---HcCCC
Confidence 677888889999998876542 3344555566666444 888988765421 234566788888873 33445
Q ss_pred EEEECCCCCcc-----chHHHHHHHhhCCCCeEEEe
Q psy15811 486 AIGVNCVRPSH-----VSTLVRCIKQSHPTVQTIVY 516 (581)
Q Consensus 486 ~iGiNC~~p~~-----~~~~l~~l~~~~~~~pl~~y 516 (581)
.|-++..+.+- -..+++++.... ++|+++.
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~~-~ipvi~~ 198 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKAT-TIPVIAS 198 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHhC-CCCEEEe
Confidence 55666643332 245677776654 5777665
No 254
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=68.59 E-value=62 Score=31.02 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=44.5
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEE-EEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeC
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLS-FSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 234 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~is-ft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvN 234 (581)
+++.+.++|+|++.+=..+...+...+++.+++. ++++.+. ++.. +..++.. +. ..+++.++++
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~-g~~~~v~~~~~~---------t~~e~~~-~~---~~~~d~v~~~ 133 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKY-GKEVQVDLIGVE---------DPEKRAK-LL---KLGVDIVILH 133 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHc-CCeEEEEEeCCC---------CHHHHHH-HH---HCCCCEEEEc
Confidence 5577889999999987666666678888888875 7877764 3222 3445554 32 3577888885
No 255
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=68.25 E-value=58 Score=34.88 Aligned_cols=95 Identities=18% Similarity=0.223 Sum_probs=57.6
Q ss_pred HHHHHHCCCcEEEEEccCC---------------HHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHh
Q psy15811 158 VEALVRAGVDYLALETIPA---------------EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 222 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET~~~---------------~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~ 222 (581)
++...++|+|.+-+-.-.+ ++.+..+++.+++. +.. ++|++++.++. +=+.+.+.+.++.
T Consensus 78 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~-g~~--v~~~~ed~~r~-~~~~l~~~~~~~~- 152 (365)
T TIGR02660 78 IEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDR-GLF--VSVGGEDASRA-DPDFLVELAEVAA- 152 (365)
T ss_pred HHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC-CCE--EEEeecCCCCC-CHHHHHHHHHHHH-
Confidence 5667789999875554332 34444666767664 554 56777765444 2233334444443
Q ss_pred hCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 223 ANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 223 ~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
..|++.|.+-=+ .|..+..+++.+++. .++||.+.
T Consensus 153 --~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~v~l~~H 191 (365)
T TIGR02660 153 --EAGADRFRFADTVGILDPFSTYELVRALRQA-VDLPLEMH 191 (365)
T ss_pred --HcCcCEEEEcccCCCCCHHHHHHHHHHHHHh-cCCeEEEE
Confidence 467776654333 499999999999875 44555544
No 256
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=68.16 E-value=30 Score=37.35 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHhcCCCeEEEEEEE
Q psy15811 405 DLIAWHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLREFPGQKAWLSFSC 457 (581)
Q Consensus 405 ~~~~~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~~~~~pv~iSft~ 457 (581)
.-.++|.+.++.|.+.|||-|.|-+|.- ..++-.+++++|+..++|+-+|..+
T Consensus 153 Ht~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~ 208 (472)
T COG5016 153 HTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHA 208 (472)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEeccc
Confidence 3468899999999999999999998876 6777788888887678888877755
No 257
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=67.99 E-value=83 Score=34.75 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCCEEEeccc-CCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEE
Q psy15811 412 PNVEALVRAGVDYLALETI-PAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 489 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~-p~~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGi 489 (581)
++++.|.++|+|+|.+-+. .+.......++.+++. +++|+++.. ..+.+++...+ ..++++|.+
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~----------v~t~~~a~~l~----~aGad~i~v 292 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGN----------VATAEQAKALI----DAGADGLRV 292 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEe----------CCCHHHHHHHH----HhCCCEEEE
Confidence 8899999999999998653 2334555667777753 688988733 34555665544 235566644
No 258
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=67.97 E-value=1.2e+02 Score=31.45 Aligned_cols=169 Identities=11% Similarity=0.111 Sum_probs=87.3
Q ss_pred CceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec---ccCC------HHHH---HHHH
Q psy15811 373 SSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE---TIPA------EKEA---LALV 440 (581)
Q Consensus 373 ~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~E---T~p~------~~Ea---~a~~ 440 (581)
+..|.|=+-=+++++.+|+.| .+.+.+. ++++.+.+.|+|+|=+- |-|. -.|. ..++
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~-------~~~~~a~----~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI 82 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTH-------NSLIDAV----KHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVV 82 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCC-------CCHHHHH----HHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 356888887777888887544 2333333 56777778999998554 2233 3463 3455
Q ss_pred HHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCC
Q psy15811 441 KLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKG 520 (581)
Q Consensus 441 ~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag 520 (581)
+.+++..++| +|+-- .. .++++... ..+++ -||-+..-.-...++.++.. +.|+++.++.|
T Consensus 83 ~~l~~~~~~~--ISIDT---------~~-~~va~~AL---~~Gad--iINDI~g~~d~~~~~~~a~~--~~~vVlmh~~g 143 (282)
T PRK11613 83 EAIAQRFEVW--ISVDT---------SK-PEVIRESA---KAGAH--IINDIRSLSEPGALEAAAET--GLPVCLMHMQG 143 (282)
T ss_pred HHHHhcCCCe--EEEEC---------CC-HHHHHHHH---HcCCC--EEEECCCCCCHHHHHHHHHc--CCCEEEEcCCC
Confidence 6666423444 56611 11 23333332 12445 35552111112334445544 58999999877
Q ss_pred CCcccccccccCCcC-----HHHHHHHHHHHHHcCC---cEE---eecCCCchHHHHHHHHHHh
Q psy15811 521 GVWDSVHMKWLDTED-----EYSILHYVPQWLEEGV---NII---GGCCEVTSYEIQQMRIMID 573 (581)
Q Consensus 521 ~~~~~~~~~~~~~~~-----~~~~~~~~~~w~~~G~---~ii---GGCCGt~P~hI~al~~~l~ 573 (581)
.+.+... ...+. + ...+.+.+....+.|+ +|| |=-.|-+++|=-++-+.+.
T Consensus 144 ~p~~~~~-~~~y~-dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~ 205 (282)
T PRK11613 144 NPKTMQE-APKYD-DVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLA 205 (282)
T ss_pred CCCcccc-CCCcc-cHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHH
Confidence 5533221 11111 1 1244566667778888 442 2114566655444433333
No 259
>PRK06801 hypothetical protein; Provisional
Probab=67.96 E-value=1.6e+02 Score=30.59 Aligned_cols=73 Identities=7% Similarity=-0.009 Sum_probs=47.9
Q ss_pred HHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC
Q psy15811 158 VEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR 237 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~ 237 (581)
++.-.+.|--+-.|-+ .+++-++++++++++. +.||+++++-....+ .+
T Consensus 10 l~~A~~~~yaV~Afn~-~n~e~~~avi~AAe~~-~~PvIl~~~~~~~~~-----------------------------~~ 58 (286)
T PRK06801 10 LAHARKHGYALGAFNV-LDSHFLRALFAAAKQE-RSPFIINIAEVHFKY-----------------------------IS 58 (286)
T ss_pred HHHHHHCCceEEEEee-CCHHHHHHHHHHHHHH-CCCEEEEeCcchhhc-----------------------------CC
Confidence 3444455665556555 4888999999999986 899999884321100 12
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 238 PSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 238 p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
.+.+...++.+.+. .++|+.+..+
T Consensus 59 ~~~~~~~~~~~a~~-~~vpV~lHlD 82 (286)
T PRK06801 59 LESLVEAVKFEAAR-HDIPVVLNLD 82 (286)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEECC
Confidence 45566667777765 6788877743
No 260
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=67.94 E-value=68 Score=33.71 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=63.0
Q ss_pred CCC-CEEEecccCCHHHHHH-HHHHHHh-cCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCCCcc
Q psy15811 420 AGV-DYLALETIPAEKEALA-LVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSH 496 (581)
Q Consensus 420 ~gv-D~i~~ET~p~~~Ea~a-~~~~~~~-~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~~ 496 (581)
.|+ |+..=|.+....=... --+.+.. ..+.|+.+++.- .+.+.+.+++..+ ...++++|-|||..|..
T Consensus 23 ~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g------~~p~~~~~aA~~~---~~~g~d~IDlN~GCP~~ 93 (318)
T TIGR00742 23 LSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGG------SDPNDLAKCAKIA---EKRGYDEINLNVGCPSD 93 (318)
T ss_pred hCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEcc------CCHHHHHHHHHHH---HhCCCCEEEEECCCCHH
Confidence 465 7877777665210000 0012221 136788888742 1233455555554 34578899999944422
Q ss_pred -----------------chHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 497 -----------------VSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 497 -----------------~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
+.++++.++... ++|+.+.--.| |....+.+...++++...+.|+..|
T Consensus 94 ~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~-~~PVsvKiR~g---------~~~~~~~~~~~~~~~~l~~~G~~~i 158 (318)
T TIGR00742 94 RVQNGNFGACLMGNADLVADCVKAMQEAV-NIPVTVKHRIG---------IDPLDSYEFLCDFVEIVSGKGCQNF 158 (318)
T ss_pred HhCCCCeehHhhcCHHHHHHHHHHHHHHh-CCCeEEEEecC---------CCCcchHHHHHHHHHHHHHcCCCEE
Confidence 344556666554 57888877665 2111112345566676677888755
No 261
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=67.89 E-value=33 Score=34.95 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEecccCC
Q psy15811 400 SMTEADLIAWHRPNVEALVRAGVDYLALETIPA 432 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~ 432 (581)
..+.+.-..+.++.+.+|...|+|.++||++-+
T Consensus 252 ~pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd 284 (305)
T COG5309 252 VPSVANQKIAVQEILNALRSCGYDVFVFEAFDD 284 (305)
T ss_pred CCChhHHHHHHHHHHhhhhccCccEEEeeeccc
Confidence 368899999999999999999999999999875
No 262
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=67.87 E-value=74 Score=31.26 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=63.8
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
++++...++|+|||+= |... ..+++..++ .++|++. .-.++.|+..++ .. +.+.|=+-=
T Consensus 71 ~~a~~a~~aGA~Fivs---P~~~--~~v~~~~~~-~~i~~iP-----------G~~TptEi~~A~--~~--Ga~~vKlFP 129 (204)
T TIGR01182 71 EQLRQAVDAGAQFIVS---PGLT--PELAKHAQD-HGIPIIP-----------GVATPSEIMLAL--EL--GITALKLFP 129 (204)
T ss_pred HHHHHHHHcCCCEEEC---CCCC--HHHHHHHHH-cCCcEEC-----------CCCCHHHHHHHH--HC--CCCEEEECC
Confidence 7888899999999964 4432 355666676 5888884 235677887776 22 223222221
Q ss_pred CCCccc--hHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCch
Q psy15811 492 VRPSHV--STLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTS 562 (581)
Q Consensus 492 ~~p~~~--~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P 562 (581)
-+.+ ...+|.|+.-.+..|++ |-.|-.. +.+.+|++.|+..+|+--.-.|
T Consensus 130 --A~~~GG~~yikal~~plp~i~~~--ptGGV~~-----------------~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 130 --AEVSGGVKMLKALAGPFPQVRFC--PTGGINL-----------------ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred --chhcCCHHHHHHHhccCCCCcEE--ecCCCCH-----------------HHHHHHHhCCCEEEEEChhhcC
Confidence 1112 24456665433344543 6555221 3458899999988877444443
No 263
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=67.36 E-value=1.6e+02 Score=30.55 Aligned_cols=125 Identities=11% Similarity=0.011 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-CCCc-------------cch
Q psy15811 433 EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC-VRPS-------------HVS 498 (581)
Q Consensus 433 ~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC-~~p~-------------~~~ 498 (581)
+.|....++.+.+..++||++-+ ++|. |.++ ++.+.+.+....++.+|-|.- +.|. .+.
T Consensus 60 ~~e~~~~~~~I~~~~~lPv~aD~---d~Gy---G~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~e 132 (290)
T TIGR02321 60 MSTHLEMMRAIASTVSIPLIADI---DTGF---GNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIE 132 (290)
T ss_pred HHHHHHHHHHHHhccCCCEEEEC---CCCC---CCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHH
Confidence 56666666666666789977655 3443 5555 465555444566777666643 2222 122
Q ss_pred HHHHHHHhh-----CCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCC-CchHHHHHHHHHH
Q psy15811 499 TLVRCIKQS-----HPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCE-VTSYEIQQMRIMI 572 (581)
Q Consensus 499 ~~l~~l~~~-----~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCG-t~P~hI~al~~~l 572 (581)
..+++++.. .++.-++++-++. |. ....++-.+.++.+.++|+..|==-++ +++++|+++.+.+
T Consensus 133 e~~~kI~Aa~~a~~~~d~~I~ARTDa~---------~~-~~g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~ 202 (290)
T TIGR02321 133 EFQGKIAAATAARADRDFVVIARVEAL---------IA-GLGQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSW 202 (290)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEeccc---------cc-cCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhc
Confidence 234444432 1122333443332 11 112456777889999999887665555 8999999999988
Q ss_pred hc
Q psy15811 573 DE 574 (581)
Q Consensus 573 ~~ 574 (581)
+.
T Consensus 203 ~~ 204 (290)
T TIGR02321 203 PG 204 (290)
T ss_pred CC
Confidence 64
No 264
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=67.14 E-value=63 Score=31.79 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=52.0
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCC------CcCCCCCCHHHHHHHHHhhCCCCceE
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDD------THTSHGELISSAVTSCLLANPDQIQA 230 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~------g~l~~G~~~~~~~~~~~~~~~~~~~~ 230 (581)
+++.+++.|+|.+++=|.. +.+.....++++++...++++|+.+..+ +......++.+.+..+.+ .+++.
T Consensus 87 ~~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ga~~ 162 (234)
T cd04732 87 DIERLLDLGVSRVIIGTAA-VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEE---LGVKA 162 (234)
T ss_pred HHHHHHHcCCCEEEECchH-HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHH---cCCCE
Confidence 4566667899998875543 2333444445555544578888765432 111234556666666643 45554
Q ss_pred EEeCC---C----ChhhHHHHHHHHHhhCCCCceEE
Q psy15811 231 IGVNC---V----RPSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 231 vGvNC---~----~p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
+-+.- . +++ .++++++.+. .++|+++
T Consensus 163 iii~~~~~~g~~~g~~--~~~i~~i~~~-~~ipvi~ 195 (234)
T cd04732 163 IIYTDISRDGTLSGPN--FELYKELAAA-TGIPVIA 195 (234)
T ss_pred EEEEeecCCCccCCCC--HHHHHHHHHh-cCCCEEE
Confidence 44432 1 222 4666777664 4555443
No 265
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=67.07 E-value=2.1e+02 Score=31.81 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHhcCCCeEEEEEE
Q psy15811 406 LIAWHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLREFPGQKAWLSFS 456 (581)
Q Consensus 406 ~~~~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~~~~~pv~iSft 456 (581)
-.++|.+.++.+.+.|+|.|.+-++-- ..++..+++++++..++|+-+|+.
T Consensus 161 t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~H 214 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTH 214 (468)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeC
Confidence 457888999999999999999987655 778888888888766788766653
No 266
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=67.03 E-value=82 Score=33.98 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=17.8
Q ss_pred HHHHHHHHHHH-------Hhccccccccc
Q psy15811 42 EACVETHRDFI-------RAGADIIQSSC 63 (581)
Q Consensus 42 e~v~~iH~~yl-------~AGAdiI~TnT 63 (581)
+.|+++-++|. +||.|.|+-+-
T Consensus 143 ~eI~~ii~~f~~AA~ra~~AGfDgVEih~ 171 (382)
T cd02931 143 EEVETFVGKFGESAVIAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 56888889998 78889887764
No 267
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=67.02 E-value=80 Score=31.15 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
..|.+.++..++.|+|++=+|--. ......+..+++ .+.++++|+.-.+ .+++=..+.+.+..+. ..+++.+
T Consensus 76 ~~~~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~-~~~kiI~S~H~f~--~tp~~~~l~~~~~~~~---~~gadiv 147 (225)
T cd00502 76 EEYLELLEEALKLGPDYVDIELDS--ALLEELINSRKK-GNTKIIGSYHDFS--GTPSDEELVSRLEKMA---ALGADIV 147 (225)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHh-CCCEEEEEeccCC--CCcCHHHHHHHHHHHH---HhCCCEE
Confidence 345556677778889999999543 334444445444 4789999986332 1222223334444443 4667877
Q ss_pred EeCCC--ChhhHHHHHHHHHhhC--CCCceEEec
Q psy15811 232 GVNCV--RPSHVSTLVRCIKQSH--PTVQTIVYP 261 (581)
Q Consensus 232 GvNC~--~p~~~~~~l~~l~~~~--~~~p~~~~p 261 (581)
=+-+. .+++...+++...+.. .+.|++.+.
T Consensus 148 Kla~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~ 181 (225)
T cd00502 148 KIAVMANSIEDNLRLLKFTRQVKNLYDIPLIAIN 181 (225)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 77775 5777777776655431 245777663
No 268
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=66.84 E-value=60 Score=32.21 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=60.0
Q ss_pred HhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC--CCCc
Q psy15811 418 VRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC--VRPS 495 (581)
Q Consensus 418 ~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC--~~p~ 495 (581)
...++|+|=+|-.........+++.+++ .+..+++|+. +-..+++-+.+.+.++.+. ..+++.+=+-+ .++.
T Consensus 89 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~-~~~kvI~S~H--~f~~tp~~~~l~~~~~~~~---~~gaDivKia~~a~~~~ 162 (228)
T TIGR01093 89 DSPGPDFVDIELFLPDDAVKELINIAKK-GGTKIIMSYH--DFQKTPSWEEIVERLEKAL---SYGADIVKIAVMANSKE 162 (228)
T ss_pred HhCCCCEEEEEccCCHHHHHHHHHHHHH-CCCEEEEecc--CCCCCCCHHHHHHHHHHHH---HhCCCEEEEEeccCCHH
Confidence 4578999999976555555556666665 5889999985 3344444444556666663 33456655655 4566
Q ss_pred cchHHHHHHHhh--CCCCeEEEeeCC
Q psy15811 496 HVSTLVRCIKQS--HPTVQTIVYPNK 519 (581)
Q Consensus 496 ~~~~~l~~l~~~--~~~~pl~~ypNa 519 (581)
++..+++..... ..+.|++.+.-+
T Consensus 163 D~~~ll~~~~~~~~~~~~p~i~~~MG 188 (228)
T TIGR01093 163 DVLTLLEITNKVDEHADVPLITMSMG 188 (228)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 666666544332 125798888743
No 269
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=66.69 E-value=98 Score=33.01 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=74.9
Q ss_pred HHhccccccccccccccccHhh-cCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCC
Q psy15811 52 IRAGADIIQSSCYQANVDNLTK-LGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTV 130 (581)
Q Consensus 52 l~AGAdiI~TnTf~a~~~~l~~-~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~ 130 (581)
+++|++.|... +.+|...+.. ++.+.+++.+.....+++|++.-.. - .+.|+-+.|.
T Consensus 131 ~~~g~~~v~i~-~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~------------v-----~~~is~~fg~---- 188 (347)
T PLN02746 131 IAAGAKEVAVF-ASASESFSKSNINCSIEESLVRYREVALAAKKHSIP------------V-----RGYVSCVVGC---- 188 (347)
T ss_pred HHcCcCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe------------E-----EEEEEeeecC----
Confidence 35566643333 2334333322 5666667766677777777654211 0 1223333332
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEE-ccC--CHHHHHHHHHHHHhc-CCCcEEEEEEEcCCCc
Q psy15811 131 LRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE-TIP--AEKEALALVKLLREF-PGQKAWLSFSCKDDTH 206 (581)
Q Consensus 131 ~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E-T~~--~~~E~~aa~~a~~~~-~~~pv~isft~~~~g~ 206 (581)
+|.+ ..+.+ ++.+.++.+.+.|+|-|-+= |.. +..++...++.+++. +..| +.|-+=++
T Consensus 189 -----p~~~----r~~~~----~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~--i~~H~Hnd-- 251 (347)
T PLN02746 189 -----PIEG----PVPPS----KVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDK--LAVHFHDT-- 251 (347)
T ss_pred -----CccC----CCCHH----HHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCe--EEEEECCC--
Confidence 1211 23444 45556667788999998554 544 778888889998853 2223 55655443
Q ss_pred CCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 207 TSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 207 l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
.|..+..++.++. .|++.|
T Consensus 252 --~GlA~AN~lAA~~----aGa~~v 270 (347)
T PLN02746 252 --YGQALANILVSLQ----MGISTV 270 (347)
T ss_pred --CChHHHHHHHHHH----hCCCEE
Confidence 5777777776663 455543
No 270
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=66.49 E-value=57 Score=34.31 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=37.2
Q ss_pred CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCC----Ccc--------chHHHHHHHhhCCCCeEE
Q psy15811 447 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR----PSH--------VSTLVRCIKQSHPTVQTI 514 (581)
Q Consensus 447 ~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~----p~~--------~~~~l~~l~~~~~~~pl~ 514 (581)
.+.|+++|+... +-+.+.++++.+ ...++++|=+|+.. +.. +.++++.++... ++|++
T Consensus 98 ~~~pvi~si~g~------~~~~~~~~a~~~---~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~ 167 (325)
T cd04739 98 VSIPVIASLNGV------SAGGWVDYARQI---EEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVA 167 (325)
T ss_pred cCCeEEEEeCCC------CHHHHHHHHHHH---HhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEE
Confidence 478999998321 112344555555 33457888888843 211 245667776665 58998
Q ss_pred EeeC
Q psy15811 515 VYPN 518 (581)
Q Consensus 515 ~ypN 518 (581)
+.-.
T Consensus 168 vKl~ 171 (325)
T cd04739 168 VKLS 171 (325)
T ss_pred EEcC
Confidence 8843
No 271
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=66.39 E-value=74 Score=33.84 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEE
Q psy15811 408 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 487 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~i 487 (581)
+.-..|+..|.++|+|++-+ ++|+..+++++-+..++ ..+|++.-+.|+. .-|+.++ ..+++.|
T Consensus 42 ~atv~Qi~~L~~aGceiVRv-av~~~~~a~al~~I~~~-~~iPlvADIHFd~----------~lAl~a~----~~G~~~i 105 (360)
T PRK00366 42 EATVAQIKRLARAGCEIVRV-AVPDMEAAAALPEIKKQ-LPVPLVADIHFDY----------RLALAAA----EAGADAL 105 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEE-ccCCHHHHHhHHHHHHc-CCCCEEEecCCCH----------HHHHHHH----HhCCCEE
Confidence 34457899999999999875 67888777766555555 6899887666531 1222333 3456777
Q ss_pred EECCC---C-CccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHH
Q psy15811 488 GVNCV---R-PSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWL 547 (581)
Q Consensus 488 GiNC~---~-p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~ 547 (581)
=||=. . .+.+..+++..+.. ++|+=+=-|+|.....--..| +...++.|.+.+.+++
T Consensus 106 RINPGNig~~~~~v~~vv~~ak~~--~ipIRIGvN~GSL~~~~~~~y-g~~t~eamveSAl~~~ 166 (360)
T PRK00366 106 RINPGNIGKRDERVREVVEAAKDY--GIPIRIGVNAGSLEKDLLEKY-GEPTPEALVESALRHA 166 (360)
T ss_pred EECCCCCCchHHHHHHHHHHHHHC--CCCEEEecCCccChHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 78863 2 34566666666665 467766778885421110112 1224566766665553
No 272
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=66.06 E-value=77 Score=31.70 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred HHHHHHHCCCcEEEEEcc--CCHHHHHHHHHHHHhcCCCcEEEEEEEcCCC------cCCCCCCHHHHHHHHHhhCCCCc
Q psy15811 157 NVEALVRAGVDYLALETI--PAEKEALALVKLLREFPGQKAWLSFSCKDDT------HTSHGELISSAVTSCLLANPDQI 228 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~--~~~~E~~aa~~a~~~~~~~pv~isft~~~~g------~l~~G~~~~~~~~~~~~~~~~~~ 228 (581)
+++.+++.|+|-+++=|. .+.+-++ ++.+++++. +++|+-...+. .-.++.++.+.+..+.+ .++
T Consensus 90 ~v~~~l~~Ga~kvvigt~a~~~~~~l~---~~~~~fg~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~---~g~ 162 (234)
T PRK13587 90 QIMDYFAAGINYCIVGTKGIQDTDWLK---EMAHTFPGR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD---IPL 162 (234)
T ss_pred HHHHHHHCCCCEEEECchHhcCHHHHH---HHHHHcCCC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH---cCC
Confidence 456666799999987654 3444333 344455444 78887665321 12356777888887754 555
Q ss_pred eEEEeCCCChhhH-----HHHHHHHHhhCCCCceEEe
Q psy15811 229 QAIGVNCVRPSHV-----STLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 229 ~~vGvNC~~p~~~-----~~~l~~l~~~~~~~p~~~~ 260 (581)
..+-++....+-+ .++++.+.+. .+.|+++.
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~~-~~ipvi~~ 198 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVKA-TTIPVIAS 198 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHHh-CCCCEEEe
Confidence 6666666422211 3566666654 55565543
No 273
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=65.99 E-value=93 Score=32.32 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=40.2
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCC--CHHHHHHHHHhhCCC--CceEEE
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGE--LISSAVTSCLLANPD--QIQAIG 232 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~--~~~~~~~~~~~~~~~--~~~~vG 232 (581)
.++.+.+.|+|++-++...++.|++.. + +-.+.+.--+++...+..|+ .+.+.++.+.+.... +-..++
T Consensus 235 ~~~~l~~~~~d~~~~d~~~dl~~~~~~---~----g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~ 307 (330)
T cd03465 235 ILELMADLGADVFSIDVTVDLAEAKKK---V----GDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILS 307 (330)
T ss_pred HHHHHHHhCCCeEeecccCCHHHHHHH---h----CCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEe
Confidence 467788999999999987777765432 2 22234444444432344442 344444444432112 335667
Q ss_pred eCCC
Q psy15811 233 VNCV 236 (581)
Q Consensus 233 vNC~ 236 (581)
..|.
T Consensus 308 ~gc~ 311 (330)
T cd03465 308 SGCE 311 (330)
T ss_pred CCCC
Confidence 7775
No 274
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=65.95 E-value=64 Score=36.21 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=52.0
Q ss_pred CCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccC-CHHHHHHHHHHHHh-cCCC
Q psy15811 372 ISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIP-AEKEALALVKLLRE-FPGQ 449 (581)
Q Consensus 372 ~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p-~~~Ea~a~~~~~~~-~~~~ 449 (581)
.+.+|++.+|+.+. ..++++.|.++|+|+|.+-+-. +-......++.+|+ +++.
T Consensus 235 ~~l~vgaavg~~~~------------------------~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~ 290 (505)
T PLN02274 235 GKLLVGAAIGTRES------------------------DKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPEL 290 (505)
T ss_pred CCEEEEEEEcCCcc------------------------HHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCC
Confidence 35788888998531 1289999999999999997743 23334467778885 4567
Q ss_pred eEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEE
Q psy15811 450 KAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 489 (581)
Q Consensus 450 pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGi 489 (581)
++++.= =.+.+++...+ ..++++|-+
T Consensus 291 ~vi~g~----------v~t~e~a~~a~----~aGaD~i~v 316 (505)
T PLN02274 291 DVIGGN----------VVTMYQAQNLI----QAGVDGLRV 316 (505)
T ss_pred cEEEec----------CCCHHHHHHHH----HcCcCEEEE
Confidence 777421 13455665554 346666643
No 275
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=65.83 E-value=1.6e+02 Score=29.91 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=34.4
Q ss_pred cCHHHHHHHHHHHHHcCCcEEeecCCC----chHHHHHHHHHHhcccC
Q psy15811 534 EDEYSILHYVPQWLEEGVNIIGGCCEV----TSYEIQQMRIMIDEFNT 577 (581)
Q Consensus 534 ~~~~~~~~~~~~w~~~G~~iiGGCCGt----~P~hI~al~~~l~~~~~ 577 (581)
.+++.+.+.++++.+.|+..|. .|-| +|..+..+-+.+++.-|
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~-l~DT~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTIN-IPDTVGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-ECCCCCCCCHHHHHHHHHHHHHhCC
Confidence 3577889999999999999885 5555 89999998888876544
No 276
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=65.82 E-value=90 Score=32.02 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhh
Q psy15811 400 SMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 479 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~ 479 (581)
.-|.+++.++-.+.+..|.+.+++++++..... .-.+++.+|+..++||+=.+ + .+..|++.-
T Consensus 46 ~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTA---Sa~al~~LR~~~~iPVvGvi--------P---aik~A~~~t--- 108 (269)
T COG0796 46 EKSEEEIRERTLEIVDFLLERGIKALVIACNTA---SAVALEDLREKFDIPVVGVI--------P---AIKPAVALT--- 108 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEecchH---HHHHHHHHHHhCCCCEEEec--------c---chHHHHHhc---
Confidence 478999999999999999999999988775543 25678888876789987222 1 133444433
Q ss_pred CCCCceEEEECCC-CCccchHHHHHHHh
Q psy15811 480 NPDQIQAIGVNCV-RPSHVSTLVRCIKQ 506 (581)
Q Consensus 480 ~~~~~~~iGiNC~-~p~~~~~~l~~l~~ 506 (581)
....+-.|+.+++ .-.....++++++.
T Consensus 109 ~~~~IgViaT~~Tvks~~y~~~i~~~~~ 136 (269)
T COG0796 109 RNGRIGVIATPATVKSNAYRDLIARFAP 136 (269)
T ss_pred cCCeEEEEeccchhccHHHHHHHHHhCC
Confidence 2335677888884 44556666666554
No 277
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=65.78 E-value=1.1e+02 Score=30.64 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=65.3
Q ss_pred HHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEc--------------CCCcCCCCCCHHHHHHHHHhhC
Q psy15811 159 EALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCK--------------DDTHTSHGELISSAVTSCLLAN 224 (581)
Q Consensus 159 ~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~--------------~~g~l~~G~~~~~~~~~~~~~~ 224 (581)
+.++.+|+|=+-+-| +.+..-.-+-++.+++...-|++++-.. .+|+...|-+.-+.++.+.
T Consensus 90 ~~ll~aGADKVSINs-aAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e--- 165 (256)
T COG0107 90 RKLLRAGADKVSINS-AAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVE--- 165 (256)
T ss_pred HHHHHcCCCeeeeCh-hHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHH---
Confidence 357789999999887 3444445556666666445555554322 3566777888888888776
Q ss_pred CCCceEEEeCCCChhhH-----HHHHHHHHhhCCCCceEEe
Q psy15811 225 PDQIQAIGVNCVRPSHV-----STLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 225 ~~~~~~vGvNC~~p~~~-----~~~l~~l~~~~~~~p~~~~ 260 (581)
..|+-=|.+||..-+.+ .++++.++.. .++|+++.
T Consensus 166 ~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~-v~iPvIAS 205 (256)
T COG0107 166 ELGAGEILLTSMDRDGTKAGYDLELTRAVREA-VNIPVIAS 205 (256)
T ss_pred HcCCceEEEeeecccccccCcCHHHHHHHHHh-CCCCEEec
Confidence 47888889999532222 3778888875 77888775
No 278
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=65.58 E-value=1.5e+02 Score=29.64 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=50.9
Q ss_pred HHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeC
Q psy15811 155 RPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 234 (581)
Q Consensus 155 ~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvN 234 (581)
..-++.+.++|+|.+++=-.+ .+|....++.+++. ++..++-+ .+ .++. +.++.+.+....-+-.+++|
T Consensus 94 ~~fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~-g~~~i~~i--~P------~T~~-~~i~~i~~~~~~~vy~~s~~ 162 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEY-GLDLIFLV--AP------TTPD-ERIKKIAELASGFIYYVSRT 162 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHc-CCcEEEEe--CC------CCCH-HHHHHHHhhCCCCEEEEeCC
Confidence 345677889999999885544 46888888899886 66544322 21 2223 33333332123335566776
Q ss_pred CC-C-----hhhHHHHHHHHHhh
Q psy15811 235 CV-R-----PSHVSTLVRCIKQS 251 (581)
Q Consensus 235 C~-~-----p~~~~~~l~~l~~~ 251 (581)
=+ + +..+.+.++.+++.
T Consensus 163 g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 163 GVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred CCCCCccCCChhHHHHHHHHHhc
Confidence 63 3 24566777777764
No 279
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=64.99 E-value=78 Score=31.85 Aligned_cols=126 Identities=15% Similarity=0.106 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEEC---CCCC-c---cchHHHHHHH
Q psy15811 433 EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN---CVRP-S---HVSTLVRCIK 505 (581)
Q Consensus 433 ~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiN---C~~p-~---~~~~~l~~l~ 505 (581)
+.|....++-+.+..++|+++-+ ++|. |.++.++.+.+.+....++.+|-|. |.++ . .....+++++
T Consensus 54 ~~e~~~~~~~I~~~~~iPv~vD~---d~Gy---G~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~ 127 (238)
T PF13714_consen 54 LTEMLAAVRRIARAVSIPVIVDA---DTGY---GNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIR 127 (238)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEE----TTTS---SSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCcEEEEc---cccc---CchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHH
Confidence 56666666666666789998765 4444 6666666666655556677765554 4211 1 1223344443
Q ss_pred hh-----CCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHHHHh
Q psy15811 506 QS-----HPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMID 573 (581)
Q Consensus 506 ~~-----~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~~l~ 573 (581)
.. ..+.-++++-++-. ......++-.+.++.+.++|+..|==.+-.+.++|+++.+.++
T Consensus 128 Aa~~a~~~~~~~I~ARTDa~~---------~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~ 191 (238)
T PF13714_consen 128 AAVDARRDPDFVIIARTDAFL---------RAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVD 191 (238)
T ss_dssp HHHHHHSSTTSEEEEEECHHC---------HHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHS
T ss_pred HHHHhccCCeEEEEEeccccc---------cCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC
Confidence 32 12344444444311 0111234667788889999999999889999999999999884
No 280
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=64.76 E-value=1e+02 Score=32.51 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCCCcEEEEEc-cCCHHHHHHHHHHHHhc-CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 154 HRPNVEALVRAGVDYLALET-IPAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET-~~~~~E~~aa~~a~~~~-~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
..++++.++++|+|+|.+-+ ..+.......++.+|+. +++|+++ | ...+.+.+.. +. ..|+|+|
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-------G---~v~t~~~A~~-l~---~aGaD~I 160 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-------G---NVVTAEAARD-LI---DAGADGV 160 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-------C---CCCCHHHHHH-HH---hcCCCEE
Confidence 46788999999999998875 34556677778888764 3477775 2 2245555543 33 4788877
Q ss_pred Ee
Q psy15811 232 GV 233 (581)
Q Consensus 232 Gv 233 (581)
-+
T Consensus 161 ~v 162 (325)
T cd00381 161 KV 162 (325)
T ss_pred EE
Confidence 55
No 281
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=64.42 E-value=1.9e+02 Score=30.62 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=89.3
Q ss_pred ccCCChHHHHHHHHHHHHhccccccccccc--cccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccc
Q psy15811 36 YLTTEPEACVETHRDFIRAGADIIQSSCYQ--ANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNL 113 (581)
Q Consensus 36 ~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~--a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~ 113 (581)
..++++|.+.++-+..-++|++++..-.|- .|+.++. |+ -.++.++.+++++++
T Consensus 101 CsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~--G~--------g~~gL~~L~~~~~~~-------------- 156 (335)
T PRK08673 101 CSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQ--GL--------GEEGLKLLAEAREET-------------- 156 (335)
T ss_pred CccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccc--cc--------cHHHHHHHHHHHHHc--------------
Confidence 357899999999999999999998877773 2333332 22 255666777777763
Q ss_pred cCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEc--cCCHHHHHHHHHHHHhcC
Q psy15811 114 LTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALET--IPAEKEALALVKLLREFP 191 (581)
Q Consensus 114 ~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET--~~~~~E~~aa~~a~~~~~ 191 (581)
.+-+.- . ..+ .++++.+.+. +|++-+=. +.+.. .++.+.+ .
T Consensus 157 ---Gl~v~t------e--------------v~d--------~~~~~~l~~~-vd~lqIgAr~~~N~~----LL~~va~-~ 199 (335)
T PRK08673 157 ---GLPIVT------E--------------VMD--------PRDVELVAEY-VDILQIGARNMQNFD----LLKEVGK-T 199 (335)
T ss_pred ---CCcEEE------e--------------eCC--------HHHHHHHHHh-CCeEEECcccccCHH----HHHHHHc-C
Confidence 111111 1 112 2345556665 88876543 33432 2333334 3
Q ss_pred CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC---C-hh---hH-HHHHHHHHhhCCCCceEEecCC
Q psy15811 192 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV---R-PS---HV-STLVRCIKQSHPTVQTIVYPNK 263 (581)
Q Consensus 192 ~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~---~-p~---~~-~~~l~~l~~~~~~~p~~~~pna 263 (581)
++||+++ .|...+=+.+..+++.+.. ......+.+-|+ - +. .+ ...+..+++. ...|++++|+-
T Consensus 200 ~kPViLk-----~G~~~ti~E~l~A~e~i~~--~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~-~~lPVi~d~sH 271 (335)
T PRK08673 200 NKPVLLK-----RGMSATIEEWLMAAEYILA--EGNPNVILCERGIRTFETATRNTLDLSAVPVIKKL-THLPVIVDPSH 271 (335)
T ss_pred CCcEEEe-----CCCCCCHHHHHHHHHHHHH--cCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHh-cCCCEEEeCCC
Confidence 8999973 2211111234444444432 344567778872 1 21 11 3455566654 57888888876
Q ss_pred C
Q psy15811 264 G 264 (581)
Q Consensus 264 g 264 (581)
+
T Consensus 272 ~ 272 (335)
T PRK08673 272 A 272 (335)
T ss_pred C
Confidence 5
No 282
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=64.27 E-value=64 Score=33.57 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=55.9
Q ss_pred HHHHHHHhCCCCEEEecccC--------------CHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHH
Q psy15811 412 PNVEALVRAGVDYLALETIP--------------AEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSC 476 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p--------------~~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l 476 (581)
..++.+.++||-.|-+|+.- +..|...=++++++- .+.+++|---. +.. .+..+++++++.
T Consensus 96 r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART--Da~--~~~g~deaI~Ra 171 (294)
T TIGR02319 96 RATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART--DAR--ESFGLDEAIRRS 171 (294)
T ss_pred HHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe--ccc--ccCCHHHHHHHH
Confidence 45788889999999999842 345555555555531 23455554433 332 345689999998
Q ss_pred HhhCCCCceEEEECC-CCCccchHHHHH
Q psy15811 477 LLANPDQIQAIGVNC-VRPSHVSTLVRC 503 (581)
Q Consensus 477 ~~~~~~~~~~iGiNC-~~p~~~~~~l~~ 503 (581)
+.....++++|=+-+ .+++.+..+.+.
T Consensus 172 ~aY~eAGAD~ifi~~~~~~~ei~~~~~~ 199 (294)
T TIGR02319 172 REYVAAGADCIFLEAMLDVEEMKRVRDE 199 (294)
T ss_pred HHHHHhCCCEEEecCCCCHHHHHHHHHh
Confidence 776678888877766 445555444443
No 283
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=64.21 E-value=1.3e+02 Score=30.66 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCC------cCCCCCc---HHHHHHHHH
Q psy15811 407 IAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDT------HTSHGEL---ISSAVTSCL 477 (581)
Q Consensus 407 ~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~------~l~~G~~---~~~~~~~l~ 477 (581)
.++++...+.+.++|+|.+=+|-= .|....++.+.+ .++||+-|+=+-+.. .=.-|.+ ..+.++..+
T Consensus 93 ~~a~~nA~r~~ke~gA~aVKlEGG---~~~~~~i~~L~~-~gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~ 168 (268)
T COG0413 93 EQALKNAARLMKEAGADAVKLEGG---EEMAETIKRLTE-RGIPVMGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAK 168 (268)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCC---HHHHHHHHHHHH-cCCceEEEecCChhhhhccCCeeeecCCHHHHHHHHHHHH
Confidence 456677788888899999999986 344455556665 699999998654322 2222333 333333333
Q ss_pred hhCCCCceEEEECCCC
Q psy15811 478 LANPDQIQAIGVNCVR 493 (581)
Q Consensus 478 ~~~~~~~~~iGiNC~~ 493 (581)
.+...++.++=+-|+.
T Consensus 169 ale~AGaf~ivlE~Vp 184 (268)
T COG0413 169 ALEEAGAFALVLECVP 184 (268)
T ss_pred HHHhcCceEEEEeccH
Confidence 3456788999999943
No 284
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=64.06 E-value=84 Score=33.44 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEecc----------cC--C----------HHHH---HHHHHHHHhcCC----CeEEE
Q psy15811 403 EADLIAWHRPNVEALVRAGVDYLALET----------IP--A----------EKEA---LALVKLLREFPG----QKAWL 453 (581)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~gvD~i~~ET----------~p--~----------~~Ea---~a~~~~~~~~~~----~pv~i 453 (581)
.+++.+.|.+.++.+.++|.|.|=+=- .| + ...+ ..+++++|+..+ .++.+
T Consensus 139 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v 218 (353)
T cd04735 139 IEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFIL 218 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence 366777888888888899999985532 22 1 1223 345555554334 45555
Q ss_pred EEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 454 SFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 454 Sft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
.+-+........|.++++.++.+..+...+++.|.|-+
T Consensus 219 ~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 219 GYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred EEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 55544444445677788776655444555778877765
No 285
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=63.73 E-value=1.4e+02 Score=30.80 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=75.8
Q ss_pred HHhccccccccccccccccHh-hcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCC
Q psy15811 52 IRAGADIIQSSCYQANVDNLT-KLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTV 130 (581)
Q Consensus 52 l~AGAdiI~TnTf~a~~~~l~-~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~ 130 (581)
+++|++.|.-. +.+|..... .++.+.+++.+.....+++|++. ...|..++ -+.+
T Consensus 84 ~~~g~~~v~i~-~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~---------------------g~~v~~~~--ed~~ 139 (279)
T cd07947 84 KEMGLKETGIL-MSVSDYHIFKKLKMTREEAMEKYLEIVEEALDH---------------------GIKPRCHL--EDIT 139 (279)
T ss_pred HHcCcCEEEEE-EcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHC---------------------CCeEEEEE--Eccc
Confidence 46788854442 344444333 36777777777777777766543 12233333 1111
Q ss_pred CCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHCCCc-EE-EEEccCCH---------HHHHHHHHHHHhcCCCc-EEE
Q psy15811 131 LRDGSEYSGHYVDSMTE-ADLIAWHRPNVEALVRAGVD-YL-ALETIPAE---------KEALALVKLLREFPGQK-AWL 197 (581)
Q Consensus 131 ~~~~~ey~~~y~~~~~~-~~~~~~~~~q~~~l~~~gvD-~l-~~ET~~~~---------~E~~aa~~a~~~~~~~p-v~i 197 (581)
..++ +.+.++-.+.++...+.|+| .| +.-|+.-. .++...++.+++..+.| +-+
T Consensus 140 -------------r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l 206 (279)
T cd07947 140 -------------RADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENL 206 (279)
T ss_pred -------------CCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceE
Confidence 0122 34455566666666779999 45 77888732 67888888887643444 445
Q ss_pred EEEEcCCCcCCCCCCHHHHHHHHH
Q psy15811 198 SFSCKDDTHTSHGELISSAVTSCL 221 (581)
Q Consensus 198 sft~~~~g~l~~G~~~~~~~~~~~ 221 (581)
++-+=++ .|..+..++.++.
T Consensus 207 ~~H~Hn~----~Gla~AN~laA~~ 226 (279)
T cd07947 207 EWHGHND----FYKAVANAVAAWL 226 (279)
T ss_pred EEEecCC----CChHHHHHHHHHH
Confidence 6666543 5777777776664
No 286
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=63.60 E-value=1.9e+02 Score=30.00 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCceEEecCCCccccCCC------chhhhccccC--c
Q psy15811 211 ELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGS------FTSQVSRHTI--K 282 (581)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~------~gt~L~~~~g--~ 282 (581)
.+..+.+..+.+ .+-..--+||...+.+..+++.... .+.|++++-..+-.-..|+ +...+.++.. .
T Consensus 4 v~~k~lL~~A~~---~~yAV~AfN~~n~e~~~avi~AAee--~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~v 78 (286)
T PRK08610 4 VSMKEMLIDAKE---NGYAVGQYNLNNLEFTQAILEASQE--ENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITI 78 (286)
T ss_pred CcHHHHHHHHHH---CCceEEEEEECCHHHHHHHHHHHHH--HCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCC
Q ss_pred ccCCCCcccccccCCChHHHHHHHHHHHHHHHhhcCCcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15811 283 DVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGV 362 (581)
Q Consensus 283 ~~~g~~lws~~~~~~~Pe~v~~vh~~yl~aiI~Tna~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~ 362 (581)
++--+ ++|-..+..+ +..|++ +|.+...|+|. ++-++..++.+..|++|+..
T Consensus 79 PV~lH--------LDHg~~~e~i-~~ai~~---------GftSVM~DgS~--------l~~eeNi~~T~~vve~Ah~~-- 130 (286)
T PRK08610 79 PVAIH--------LDHGSSFEKC-KEAIDA---------GFTSVMIDASH--------SPFEENVATTKKVVEYAHEK-- 130 (286)
T ss_pred CEEEE--------CCCCCCHHHH-HHHHHc---------CCCEEEEeCCC--------CCHHHHHHHHHHHHHHHHHc--
Q ss_pred hhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15811 363 DYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVD-------SMTEADLIAWHRPNVEALVRAGVDYLAL 427 (581)
Q Consensus 363 ~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~-------~~~~~~~~~~~~~~~~~l~~~gvD~i~~ 427 (581)
.+.|=|-+|-.| |.-++ -+++++..+|++ +.|||.|.+
T Consensus 131 ----------gv~VEaElG~vg----------g~ed~~~~~~~~yT~peea~~Fv~-------~TgvD~LAv 175 (286)
T PRK08610 131 ----------GVSVEAELGTVG----------GQEDDVVADGIIYADPKECQELVE-------KTGIDALAP 175 (286)
T ss_pred ----------CCEEEEEEeccC----------CccCCCCCcccccCCHHHHHHHHH-------HHCCCEEEe
No 287
>PRK12999 pyruvate carboxylase; Reviewed
Probab=63.52 E-value=85 Score=39.00 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=69.4
Q ss_pred HHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEc----CCCcCCCCCCHHHHHHHHHhhCCCCceEEE
Q psy15811 158 VEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLSFSCK----DDTHTSHGELISSAVTSCLLANPDQIQAIG 232 (581)
Q Consensus 158 ~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~----~~g~l~~G~~~~~~~~~~~~~~~~~~~~vG 232 (581)
++..++.|+|+| +|-.+++++.++.+++++++. +.-+-+++++. +-.+ .-.+++-.+..+.++...|++.|.
T Consensus 633 i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~--~~~~~~~~~~~a~~l~~~Ga~~i~ 709 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLNWVENMRVAIDAVRET-GKIAEAAICYTGDILDPAR--AKYDLDYYVDLAKELEKAGAHILA 709 (1146)
T ss_pred HHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCC--CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 455667899997 777889999999999999986 66555666655 1111 113444333333333357888877
Q ss_pred eCCC----ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 233 VNCV----RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 233 vNC~----~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
+-=+ .|..+..+++.+++. .++||.+.-.
T Consensus 710 ikDt~G~l~P~~~~~lv~~lk~~-~~ipi~~H~H 742 (1146)
T PRK12999 710 IKDMAGLLKPAAAYELVSALKEE-VDLPIHLHTH 742 (1146)
T ss_pred ECCccCCCCHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 7554 499999999999986 5788876544
No 288
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=63.45 E-value=24 Score=36.96 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=64.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy15811 74 LGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAW 153 (581)
Q Consensus 74 ~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~ 153 (581)
+|++....+|++++.+.-|+.+ . ..+++|. | .+-+.|. +..+.+++...
T Consensus 85 MGLDW~~a~ELIrRs~aeA~~~-g-------------------~~ia~Ga-G--TD~L~~~--------~~~sld~V~~A 133 (382)
T PF06187_consen 85 MGLDWAAARELIRRSAAEARAV-G-------------------ARIACGA-G--TDQLDPA--------PAASLDDVIAA 133 (382)
T ss_dssp TTB-HHHHHHHHHHHHHHHHTS-S---------------------EEEEE-----TTS-----------TT--HHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhc-C-------------------CcEEeec-C--cCCCCCC--------CCCCHHHHHHH
Confidence 6788788889999988877654 1 2233332 2 1223321 24689999999
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHH---------H-HHHHhcCCCcEEEEEEE---cC--CCcCCCCCCHHHHHH
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALAL---------V-KLLREFPGQKAWLSFSC---KD--DTHTSHGELISSAVT 218 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa---------~-~a~~~~~~~pv~isft~---~~--~g~l~~G~~~~~~~~ 218 (581)
|++|++...+.|...|+.-. -.=++.+ - +.+++ .+.||++-.=- ++ .|+- ...++.++..
T Consensus 134 Y~eQ~~~ve~~Gg~~ILMAS---RaLA~~A~~p~DY~~VY~~lL~q-~~~PVILHWLG~mFDPaL~GYW-Gs~d~~~A~~ 208 (382)
T PF06187_consen 134 YEEQLEAVEAAGGRVILMAS---RALAAVARSPDDYLRVYDRLLSQ-ADEPVILHWLGDMFDPALAGYW-GSADLDAAMD 208 (382)
T ss_dssp HHHHHHHHHHTT--EEE------HHHHHH--SHHHHHHHHHHHHHH--SS-EEEEEE-TTT-GGGTTTT-S-SSHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEeeh---HHHHHhhCCHHHHHHHHHHHHHH-cCCCEEEEecccccCccccccc-CCCcHHHHHH
Confidence 99999999999999998543 2111111 1 11223 47899887532 22 2222 1245665555
Q ss_pred HHHh---hCCCCceEEEeCC
Q psy15811 219 SCLL---ANPDQIQAIGVNC 235 (581)
Q Consensus 219 ~~~~---~~~~~~~~vGvNC 235 (581)
.+.+ ....++++|=|.-
T Consensus 209 t~l~lI~~~~~kVdGIKiSL 228 (382)
T PF06187_consen 209 TVLELIAAHADKVDGIKISL 228 (382)
T ss_dssp HHHHHHHHTGGGEEEEEEES
T ss_pred HHHHHHHhChhhcCeeEecc
Confidence 5433 3345566555544
No 289
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=63.25 E-value=93 Score=30.99 Aligned_cols=102 Identities=11% Similarity=0.065 Sum_probs=64.1
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCc--CCCCCcHHHHHHHHHhhCCCCceEEEE
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTH--TSHGELISSAVTSCLLANPDQIQAIGV 489 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~--l~~G~~~~~~~~~l~~~~~~~~~~iGi 489 (581)
+.++.++..|+|-+++-|... .. ..+-++++++.+-.+++|+-++++.. ..++.++.+.++.+... ...+...-+
T Consensus 91 edv~~~l~~Ga~~viigt~~~-~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di 167 (233)
T cd04723 91 ENAQEWLKRGASRVIVGTETL-PS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDI 167 (233)
T ss_pred HHHHHHHHcCCCeEEEcceec-cc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEc
Confidence 778888889999988876553 33 66777777764437899998865421 24677788888888544 334444444
Q ss_pred CCCCC--ccchHHHHHHHhhCCCCeEEEee
Q psy15811 490 NCVRP--SHVSTLVRCIKQSHPTVQTIVYP 517 (581)
Q Consensus 490 NC~~p--~~~~~~l~~l~~~~~~~pl~~yp 517 (581)
+..+. ..-..+++++.... ++|+++--
T Consensus 168 ~~~G~~~g~~~~~~~~i~~~~-~ipvi~~G 196 (233)
T cd04723 168 DRVGSGQGPDLELLERLAARA-DIPVIAAG 196 (233)
T ss_pred CccccCCCcCHHHHHHHHHhc-CCCEEEeC
Confidence 44221 11235566776654 57765543
No 290
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.19 E-value=66 Score=33.94 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=51.8
Q ss_pred CCCH---HHHHHHHHHHHHHHHhCCCCEEEec------------ccCC-------------HHHHHHHHHHHHhcC--CC
Q psy15811 400 SMTE---ADLIAWHRPNVEALVRAGVDYLALE------------TIPA-------------EKEALALVKLLREFP--GQ 449 (581)
Q Consensus 400 ~~~~---~~~~~~~~~~~~~l~~~gvD~i~~E------------T~p~-------------~~Ea~a~~~~~~~~~--~~ 449 (581)
.++. +++.+.|.+.++...++|.|.|=+= ...+ ..-...+++++|+.. +.
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~ 217 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGF 217 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4554 5567788888888888999998442 1111 223345666666543 35
Q ss_pred eEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEE
Q psy15811 450 KAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 489 (581)
Q Consensus 450 pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGi 489 (581)
|+.+-++..+ ....|.+++++++.+..+...+++.|-|
T Consensus 218 ~v~vris~~~--~~~~g~~~eea~~ia~~Le~~Gvd~iev 255 (338)
T cd04733 218 PVGIKLNSAD--FQRGGFTEEDALEVVEALEEAGVDLVEL 255 (338)
T ss_pred eEEEEEcHHH--cCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 6766665422 2345667777766554444455665544
No 291
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=63.12 E-value=1.2e+02 Score=30.32 Aligned_cols=91 Identities=9% Similarity=-0.026 Sum_probs=56.9
Q ss_pred HHHHHHHhCCCCEEEecccCC--HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEE
Q psy15811 412 PNVEALVRAGVDYLALETIPA--EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 489 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~--~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGi 489 (581)
+.++.+.++|+|.|++=..|- ..|....++.+++ .++.+.+-++ ..++++..-..+ ....++..+++
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~-~Gl~~~~~v~--------p~T~~e~l~~~~--~~~~~~l~msv 160 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKN-KGLKPVFFTS--------PKFPDLLIHRLS--KLSPLFIYYGL 160 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHH-cCCCEEEEEC--------CCCCHHHHHHHH--HhCCCEEEEEe
Confidence 446677789999999866542 5788888899998 5888776663 244554444444 23456666788
Q ss_pred CC-CCC---ccchHHHHHHHhhCCCCeE
Q psy15811 490 NC-VRP---SHVSTLVRCIKQSHPTVQT 513 (581)
Q Consensus 490 NC-~~p---~~~~~~l~~l~~~~~~~pl 513 (581)
|- ++- ..+...+++++...++.|+
T Consensus 161 ~~~~g~~~~~~~~~~i~~lr~~~~~~~i 188 (244)
T PRK13125 161 RPATGVPLPVSVERNIKRVRNLVGNKYL 188 (244)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCCCE
Confidence 87 332 2334455566665433453
No 292
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=63.05 E-value=1.9e+02 Score=29.94 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEE
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSC 201 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~ 201 (581)
+.++...+.|--+-.|-+ .+++-++++++++++. +.|++++++-
T Consensus 8 ~iL~~A~~~~yAV~AfN~-~n~e~~~avi~AAee~-~sPvIlq~~~ 51 (288)
T TIGR00167 8 ELLQDAKEEGYAIPAFNI-NNLETINAVLEAAAEE-KSPVIIQFSN 51 (288)
T ss_pred HHHHHHHHCCceEEEEEE-CCHHHHHHHHHHHHHH-CCCEEEECCc
Confidence 344445556665555544 5799999999999986 8899998743
No 293
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=62.54 E-value=1.6e+02 Score=31.28 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=62.8
Q ss_pred HHHHHHhCCCCEEEecccCC-HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 413 NVEALVRAGVDYLALETIPA-EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 413 ~~~~l~~~gvD~i~~ET~p~-~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
.++...+.|+|.|-+-|.-+ ...++..++.+|+ .+..+.+.+..- +..+.+..++.+......+++.|.+--
T Consensus 93 dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~-~G~~v~~~l~~a------~~~~~e~l~~~a~~~~~~Ga~~i~i~D 165 (337)
T PRK08195 93 DLKMAYDAGVRVVRVATHCTEADVSEQHIGLARE-LGMDTVGFLMMS------HMAPPEKLAEQAKLMESYGAQCVYVVD 165 (337)
T ss_pred HHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHH-CCCeEEEEEEec------cCCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 35666788999987765433 4455666777776 477777766532 223455444444333445677666655
Q ss_pred C----CCccchHHHHHHHhhC-CCCeEEEeeC
Q psy15811 492 V----RPSHVSTLVRCIKQSH-PTVQTIVYPN 518 (581)
Q Consensus 492 ~----~p~~~~~~l~~l~~~~-~~~pl~~ypN 518 (581)
+ .|+.+..+++.++... +++|+++...
T Consensus 166 T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H 197 (337)
T PRK08195 166 SAGALLPEDVRDRVRALRAALKPDTQVGFHGH 197 (337)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 2 6888888999988764 3578877663
No 294
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=62.44 E-value=84 Score=30.92 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHHHHCCCcEEEEEc--cCCHHHHHHHHHHHHhcCCCcEEEEEEEcCC------CcCCCCCCHHHHHHHHHhhCCCC
Q psy15811 156 PNVEALVRAGVDYLALET--IPAEKEALALVKLLREFPGQKAWLSFSCKDD------THTSHGELISSAVTSCLLANPDQ 227 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET--~~~~~E~~aa~~a~~~~~~~pv~isft~~~~------g~l~~G~~~~~~~~~~~~~~~~~ 227 (581)
++++.+.+.|+|.+++=| +.+.+.+. ++++++...++++|+.+..+ .+-....++.+.+..+.+ .+
T Consensus 85 ed~~~~~~~Ga~~vvlgs~~l~d~~~~~---~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~---~g 158 (230)
T TIGR00007 85 EDVEKLLDLGVDRVIIGTAAVENPDLVK---ELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEE---LG 158 (230)
T ss_pred HHHHHHHHcCCCEEEEChHHhhCHHHHH---HHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHh---CC
Confidence 355667779999887654 34444444 44444423457777765421 111123455666666653 44
Q ss_pred ceE---EEeCCC----ChhhHHHHHHHHHhhCCCCceE
Q psy15811 228 IQA---IGVNCV----RPSHVSTLVRCIKQSHPTVQTI 258 (581)
Q Consensus 228 ~~~---vGvNC~----~p~~~~~~l~~l~~~~~~~p~~ 258 (581)
++. ..++.. +++ .++++.+.+. .+.|++
T Consensus 159 ~~~ii~~~~~~~g~~~g~~--~~~i~~i~~~-~~ipvi 193 (230)
T TIGR00007 159 LEGIIYTDISRDGTLSGPN--FELTKELVKA-VNVPVI 193 (230)
T ss_pred CCEEEEEeecCCCCcCCCC--HHHHHHHHHh-CCCCEE
Confidence 443 334442 232 4566666654 445544
No 295
>PRK07094 biotin synthase; Provisional
Probab=62.43 E-value=40 Score=35.18 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHHh
Q psy15811 238 PSHVSTLVRCIKQ 250 (581)
Q Consensus 238 p~~~~~~l~~l~~ 250 (581)
.+++...++.+++
T Consensus 194 ~ed~~~~l~~l~~ 206 (323)
T PRK07094 194 LEDLADDILFLKE 206 (323)
T ss_pred HHHHHHHHHHHHh
Confidence 3455555555554
No 296
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=62.31 E-value=2e+02 Score=29.95 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=31.2
Q ss_pred CcCHHHHHHHHHHHHHcCCcEEeecCC----CchHHHHHHHHHHh
Q psy15811 533 TEDEYSILHYVPQWLEEGVNIIGGCCE----VTSYEIQQMRIMID 573 (581)
Q Consensus 533 ~~~~~~~~~~~~~w~~~G~~iiGGCCG----t~P~hI~al~~~l~ 573 (581)
..++++..+.+++.++.|.-|++-=|| |.++.++++.+.++
T Consensus 281 ~gt~e~i~~~~~~~l~~g~~Il~~Gc~i~~~tp~env~a~v~a~~ 325 (326)
T cd03307 281 NGTPEDVKAEARKCLEDGVDILAPGCGIAPRTPLANLKAMVEARK 325 (326)
T ss_pred CCCHHHHHHHHHHHHHccCCEecCcCCCCCCCCHHHHHHHHHHHh
Confidence 345788999999999987666665554 67788998887765
No 297
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=62.27 E-value=52 Score=32.97 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=38.2
Q ss_pred CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChh-----------------hHHHHHHHHHhhCCC
Q psy15811 192 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPS-----------------HVSTLVRCIKQSHPT 254 (581)
Q Consensus 192 ~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~-----------------~~~~~l~~l~~~~~~ 254 (581)
..|+++|+.. .++++++..+... ..++++|-+||++|. .+.++++.++. .+
T Consensus 67 ~~~vivnv~~---------~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~--~~ 134 (231)
T TIGR00736 67 RALVSVNVRF---------VDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE--LN 134 (231)
T ss_pred cCCEEEEEec---------CCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc--CC
Confidence 5688988843 3455554433221 247899999998655 34556666663 46
Q ss_pred CceEEecCCC
Q psy15811 255 VQTIVYPNKG 264 (581)
Q Consensus 255 ~p~~~~pnag 264 (581)
+|++++-..+
T Consensus 135 ~PVsvKiR~~ 144 (231)
T TIGR00736 135 KPIFVKIRGN 144 (231)
T ss_pred CcEEEEeCCC
Confidence 7888875544
No 298
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.84 E-value=78 Score=31.26 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=58.6
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
++++...++|+||++- |...+ .+++..++ .++|++.. -.++.++.... ..+++.|-+
T Consensus 78 ~~a~~a~~aGA~Fivs---P~~~~--~vi~~a~~-~~i~~iPG-----------~~TptEi~~a~----~~Ga~~vKl-- 134 (212)
T PRK05718 78 EQLAQAIEAGAQFIVS---PGLTP--PLLKAAQE-GPIPLIPG-----------VSTPSELMLGM----ELGLRTFKF-- 134 (212)
T ss_pred HHHHHHHHcCCCEEEC---CCCCH--HHHHHHHH-cCCCEeCC-----------CCCHHHHHHHH----HCCCCEEEE--
Confidence 6788888999999974 44444 45555555 47887733 24566655544 224444444
Q ss_pred CCCcc-c--hHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEee
Q psy15811 492 VRPSH-V--STLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGG 556 (581)
Q Consensus 492 ~~p~~-~--~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGG 556 (581)
-|.. + ...|+.|+.-.+..+++ |-.|-. + +.+.+|++.|..++||
T Consensus 135 -FPa~~~gg~~~lk~l~~p~p~~~~~--ptGGV~-------------~----~ni~~~l~ag~v~~vg 182 (212)
T PRK05718 135 -FPAEASGGVKMLKALAGPFPDVRFC--PTGGIS-------------P----ANYRDYLALPNVLCIG 182 (212)
T ss_pred -ccchhccCHHHHHHHhccCCCCeEE--EeCCCC-------------H----HHHHHHHhCCCEEEEE
Confidence 3322 2 35567776543344443 554421 1 3457899999655555
No 299
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=61.79 E-value=24 Score=36.92 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=52.7
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHH---HHHHHHHHh-------cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhh
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEA---LALVKLLRE-------FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 223 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~---~aa~~a~~~-------~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~ 223 (581)
||..+.-+ +|+|+..=|-++.-.-. +.-.....+ ..+.|+++|+. |.++++.++++...
T Consensus 16 fR~l~~~~--g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~---------g~~p~~~~~aA~~~ 84 (312)
T PRK10550 16 VRELLTEV--NDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL---------GQYPQWLAENAARA 84 (312)
T ss_pred HHHHHHHh--CCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec---------cCCHHHHHHHHHHH
Confidence 55544433 34899988877632111 111111111 12478998873 44444444333222
Q ss_pred CCCCceEEEeCCCChh-----------------hHHHHHHHHHhhC-CCCceEEecCCC
Q psy15811 224 NPDQIQAIGVNCVRPS-----------------HVSTLVRCIKQSH-PTVQTIVYPNKG 264 (581)
Q Consensus 224 ~~~~~~~vGvNC~~p~-----------------~~~~~l~~l~~~~-~~~p~~~~pnag 264 (581)
...+.+.|-+||++|. .+.++++.+++.. .++||+++-..|
T Consensus 85 ~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g 143 (312)
T PRK10550 85 VELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLG 143 (312)
T ss_pred HHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECC
Confidence 2468999999998763 2334455555532 146777775443
No 300
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=61.77 E-value=2.1e+02 Score=29.98 Aligned_cols=228 Identities=15% Similarity=0.195 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHhccccccccccccccccHhh-cCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEE
Q psy15811 42 EACVETHRDFIRAGADIIQSSCYQANVDNLTK-LGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIET 120 (581)
Q Consensus 42 e~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~-~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~V 120 (581)
+.+.+.-++-++.|-.-+.. |+..+...+. .|-....-..+..+|++..++... +++|
T Consensus 54 d~l~~~v~~~~~~Gi~~v~l--Fgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p-------------------~l~v 112 (320)
T cd04823 54 DELLKEAEEAVDLGIPAVAL--FPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFP-------------------ELGI 112 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEE--ecCCCcccCCcccccccCCCChHHHHHHHHHHhCC-------------------CcEE
Confidence 55555558888999874332 5553222222 222111122367888888776642 4555
Q ss_pred Eee--cCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc--CCCcEE
Q psy15811 121 AAS--IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF--PGQKAW 196 (581)
Q Consensus 121 ags--iGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~--~~~pv~ 196 (581)
..+ +-||...=+.|-- . .+.++.++-.+...+|+-.++++|+|++.==-|-|- .+.++.+++.+. .+.|++
T Consensus 113 i~DVclc~YT~hGHcGil-~---~~~idND~Tl~~L~~~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im 187 (320)
T cd04823 113 ITDVALDPYTSHGHDGIV-R---DGGILNDETVEVLCKQALVQAEAGADIVAPSDMMDG-RIGAIREALDAEGFTNVSIL 187 (320)
T ss_pred EEeeeccCCCCCCcceec-c---CCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccchhh-HHHHHHHHHHHCCCCCCcee
Confidence 554 5566655444311 1 124788999999999999999999999985555554 456667777643 356544
Q ss_pred EEEEEc---------------------CCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCC
Q psy15811 197 LSFSCK---------------------DDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTV 255 (581)
Q Consensus 197 isft~~---------------------~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~ 255 (581)
|-+.+ ...+-++-..-.+|+..+......|+|.+.|-=+.| -+.+++.++.. .++
T Consensus 188 -SYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~--YLDIi~~~k~~-~~l 263 (320)
T cd04823 188 -SYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMP--YLDIIRRVKDE-FGV 263 (320)
T ss_pred -echHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHh-cCC
Confidence 43221 011233444556677665544568899999987655 35788888886 789
Q ss_pred ceEEecCCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc
Q psy15811 256 QTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA 317 (581)
Q Consensus 256 p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn 317 (581)
|+.+|--+| .++ .|+. ... .+ | ++..+.+.+.+..+-+| +|.|.
T Consensus 264 PvaaYqVSG------EYa-Mika--Aa~--~G--~-----~d~~~~~~Esl~~ikRAGAd~IiTY 310 (320)
T cd04823 264 PTFAYQVSG------EYA-MLKA--AAQ--NG--W-----LDEDKVMLESLLAFKRAGADGILTY 310 (320)
T ss_pred CEEEEEccH------HHH-HHHH--HHH--cC--C-----CcHHHHHHHHHHHHHhcCCCEEeec
Confidence 999996665 110 0101 001 11 2 55667788888999998 66665
No 301
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=61.61 E-value=1.1e+02 Score=30.29 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=60.8
Q ss_pred HHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC--Chh
Q psy15811 162 VRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV--RPS 239 (581)
Q Consensus 162 ~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~--~p~ 239 (581)
...++|++=+|-....+.....++.+++ .+..+++|+.-- .++++-..+.+.+..+. ..|+|.+=+-+. .++
T Consensus 89 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~-~~~kvI~S~H~f--~~tp~~~~l~~~~~~~~---~~gaDivKia~~a~~~~ 162 (228)
T TIGR01093 89 DSPGPDFVDIELFLPDDAVKELINIAKK-GGTKIIMSYHDF--QKTPSWEEIVERLEKAL---SYGADIVKIAVMANSKE 162 (228)
T ss_pred HhCCCCEEEEEccCCHHHHHHHHHHHHH-CCCEEEEeccCC--CCCCCHHHHHHHHHHHH---HhCCCEEEEEeccCCHH
Confidence 5678999999976666556666666655 478899998632 22333333444555544 577888888885 577
Q ss_pred hHHHHHHHHHhh--CCCCceEEec
Q psy15811 240 HVSTLVRCIKQS--HPTVQTIVYP 261 (581)
Q Consensus 240 ~~~~~l~~l~~~--~~~~p~~~~p 261 (581)
+...+++...+. ..+.|++.+.
T Consensus 163 D~~~ll~~~~~~~~~~~~p~i~~~ 186 (228)
T TIGR01093 163 DVLTLLEITNKVDEHADVPLITMS 186 (228)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 777776654432 1457887774
No 302
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=61.60 E-value=2.2e+02 Score=30.00 Aligned_cols=227 Identities=14% Similarity=0.168 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEE
Q psy15811 42 EACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETA 121 (581)
Q Consensus 42 e~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~Va 121 (581)
+.+.+.-++-++.|-.-|.. |+....+ .+.|-....-.-+..+|++..|+... +++|.
T Consensus 59 d~l~~~v~~~~~~Gi~av~L--Fgv~~~K-d~~gs~A~~~~g~v~rair~iK~~~p-------------------~l~vi 116 (323)
T PRK09283 59 DLLVKEAEEAVELGIPAVAL--FGVPELK-DEDGSEAYNPDGLVQRAIRAIKKAFP-------------------ELGVI 116 (323)
T ss_pred HHHHHHHHHHHHCCCCEEEE--eCcCCCC-CcccccccCCCCHHHHHHHHHHHhCC-------------------CcEEE
Confidence 45666667888999875544 4442111 11232111123467888888876642 45555
Q ss_pred ee--cCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc--CCCcEEE
Q psy15811 122 AS--IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF--PGQKAWL 197 (581)
Q Consensus 122 gs--iGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~--~~~pv~i 197 (581)
.+ +-||...=+.|- .. .+.++.++-.+...+|+-.++++|+|++.==-|-|- .+.++.+++.+. .+.+++
T Consensus 117 ~DVcLc~YT~hGHcGi-l~---~g~idND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im- 190 (323)
T PRK09283 117 TDVCLDEYTSHGHCGI-LE---DGYVDNDETLELLAKQALSQAEAGADIVAPSDMMDG-RVGAIREALDEAGFTDVPIM- 190 (323)
T ss_pred EeeeccCCCCCCceec-cc---CCcCcCHHHHHHHHHHHHHHHHhCCCEEEccccccc-HHHHHHHHHHHCCCCCCcee-
Confidence 54 556665544431 11 135778999999999999999999999986666555 456777777643 345544
Q ss_pred EEEEc---------------------CCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCc
Q psy15811 198 SFSCK---------------------DDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQ 256 (581)
Q Consensus 198 sft~~---------------------~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p 256 (581)
|-+.+ ...+-++-..-.+|+..+......|+|.+.|-=+.| -+.+++.+++. .++|
T Consensus 191 SYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~-~~~P 267 (323)
T PRK09283 191 SYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALP--YLDIIRRVKDE-FNLP 267 (323)
T ss_pred ecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHhc-CCCC
Confidence 43221 111234455566777666555568899999987765 46788888886 7899
Q ss_pred eEEecCCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc
Q psy15811 257 TIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA 317 (581)
Q Consensus 257 ~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn 317 (581)
+.+|=-+| .++ .|+.. .. .+ | ++..+.+.+.+..+-+| +|.|.
T Consensus 268 vaaYqVSG------EYa-MikaA--a~--~G--~-----~D~~~~~~Esl~~~kRAGAd~IiTY 313 (323)
T PRK09283 268 VAAYQVSG------EYA-MIKAA--AQ--NG--W-----IDEERVVLESLLSIKRAGADGILTY 313 (323)
T ss_pred EEEEEccH------HHH-HHHHH--HH--cC--C-----CCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99996665 110 01110 00 11 2 45566788888999998 66664
No 303
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=61.52 E-value=1.8e+02 Score=29.19 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=51.8
Q ss_pred HHHHHHCCCcEEEEEcc--CCHHHHHHHHHHHHhcCCCcEEEEEEEcCC--------------CcCCCCCCHHHHHHHHH
Q psy15811 158 VEALVRAGVDYLALETI--PAEKEALALVKLLREFPGQKAWLSFSCKDD--------------THTSHGELISSAVTSCL 221 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET~--~~~~E~~aa~~a~~~~~~~pv~isft~~~~--------------g~l~~G~~~~~~~~~~~ 221 (581)
++-++..|+|.+++=|. .+.+-++ +..++++.-.+++|+-+.++ +....+....+.+..+.
T Consensus 89 ~~~~~~~Ga~~vivgt~~~~~p~~~~---~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~ 165 (254)
T TIGR00735 89 VDKLLRAGADKVSINTAAVKNPELIY---ELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVE 165 (254)
T ss_pred HHHHHHcCCCEEEEChhHhhChHHHH---HHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHH
Confidence 45556679999887553 3443333 33334433457788766422 11223556666666665
Q ss_pred hhCCCCceEEEeCCCChhh-----HHHHHHHHHhhCCCCceEEe
Q psy15811 222 LANPDQIQAIGVNCVRPSH-----VSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 222 ~~~~~~~~~vGvNC~~p~~-----~~~~l~~l~~~~~~~p~~~~ 260 (581)
..+++.|-++....+. -.++++.+.+. .++|++..
T Consensus 166 ---~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~-~~ipvia~ 205 (254)
T TIGR00735 166 ---KLGAGEILLTSMDKDGTKSGYDLELTKAVSEA-VKIPVIAS 205 (254)
T ss_pred ---HcCCCEEEEeCcCcccCCCCCCHHHHHHHHHh-CCCCEEEe
Confidence 4677777665532211 13566666664 45555543
No 304
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=61.42 E-value=99 Score=35.05 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCcEEEEEccC--CHHH---------HHHHHHHHHhcCCCcEEEEEEEcC--------------------
Q psy15811 155 RPNVEALVRAGVDYLALETIP--AEKE---------ALALVKLLREFPGQKAWLSFSCKD-------------------- 203 (581)
Q Consensus 155 ~~q~~~l~~~gvD~l~~ET~~--~~~E---------~~aa~~a~~~~~~~pv~isft~~~-------------------- 203 (581)
.++++.++++|+|-+.+-|.. +.+| -..+-++++++.+.-|++|+-...
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccC
Confidence 367888999999999998832 2211 133445555665555888776432
Q ss_pred --------------CCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhH-----HHHHHHHHhhCCCCceEEe
Q psy15811 204 --------------DTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHV-----STLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 204 --------------~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~-----~~~l~~l~~~~~~~p~~~~ 260 (581)
+|+-..+.++.+.++.+. ..|+--|-+||..-+-+ .++++.+... .++|+++.
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~---~~Gageil~t~id~DGt~~G~d~~l~~~v~~~-~~ipvias 488 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVE---ELGAGEILLNCIDCDGQGKGFDIELVKLVSDA-VTIPVIAS 488 (538)
T ss_pred cCcccceEEEEEEecCcccCCCCHHHHHHHHH---hcCCCEEEEeeccccccccCcCHHHHHHHHhh-CCCCEEEE
Confidence 223334667777777775 47888899998633222 4667777765 67777765
No 305
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=61.17 E-value=26 Score=35.24 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEE
Q psy15811 148 ADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSF 199 (581)
Q Consensus 148 ~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isf 199 (581)
.+-.+.--+|++++.++|+|.+++|.+.+.+|++...+.+ +.|+.+..
T Consensus 151 ~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~----~~Pl~v~~ 198 (238)
T PF13714_consen 151 EEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV----DGPLNVNP 198 (238)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH----SSEEEEET
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc----CCCEEEEc
Confidence 4555666789999999999999999999999987777776 47866543
No 306
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=60.97 E-value=1.6e+02 Score=28.17 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=66.0
Q ss_pred HHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEE-EEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 413 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLS-FSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 413 ~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iS-ft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
.++.+.++|+|++++=..+...+...+++.+++ .++++.+. +++. +..++.+.+ ..+++.++++=
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~-~g~~~~v~~~~~~---------t~~e~~~~~----~~~~d~v~~~~ 134 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKK-YGKEVQVDLIGVE---------DPEKRAKLL----KLGVDIVILHR 134 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHH-cCCeEEEEEeCCC---------CHHHHHHHH----HCCCCEEEEcC
Confidence 457788899999998776665667788888887 58888776 3331 344444432 23556666641
Q ss_pred -C-----CCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEee
Q psy15811 492 -V-----RPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGG 556 (581)
Q Consensus 492 -~-----~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGG 556 (581)
. +.....+.+++++... +.|+.+-+... + +.++++++.|+..++.
T Consensus 135 ~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~GGI~---------------~----~~i~~~~~~Gad~vvv 185 (202)
T cd04726 135 GIDAQAAGGWWPEDDLKKVKKLL-GVKVAVAGGIT---------------P----DTLPEFKKAGADIVIV 185 (202)
T ss_pred cccccccCCCCCHHHHHHHHhhc-CCCEEEECCcC---------------H----HHHHHHHhcCCCEEEE
Confidence 1 1233456666666532 45654433221 1 2357888889875543
No 307
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=60.94 E-value=23 Score=33.63 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
+|++..+++|+|.|.+.++ +.++++.+++.+++.... +.+.++ .|-+++.+.+-. ..|+|.|++-+
T Consensus 91 ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~-v~ie~S--------GGI~~~ni~~ya----~~gvD~isvg~ 156 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPR-VKIEAS--------GGITLENIAEYA----KTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTT-SEEEEE--------SSSSTTTHHHHH----HTT-SEEEECH
T ss_pred HHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCc-EEEEEE--------CCCCHHHHHHHH----hcCCCEEEcCh
Confidence 3556677899999999998 668999999988865222 333222 123333222222 36789998876
No 308
>PRK06256 biotin synthase; Validated
Probab=60.90 E-value=1.7e+02 Score=30.61 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=15.0
Q ss_pred CCChHHHHHHHHHHHHhccc
Q psy15811 38 TTEPEACVETHRDFIRAGAD 57 (581)
Q Consensus 38 l~~Pe~v~~iH~~yl~AGAd 57 (581)
.-.||.|.+.-+...+.|+.
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~ 109 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAG 109 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCC
Confidence 45678777777788888974
No 309
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=60.73 E-value=1.3e+02 Score=31.26 Aligned_cols=101 Identities=14% Similarity=0.077 Sum_probs=68.5
Q ss_pred HHHHHHHHHCCCcEEEEEcc----------------CCHHHHHHHHHHHHhc-CCCcEEEEEEEcCCCcCCCCCCHHHHH
Q psy15811 155 RPNVEALVRAGVDYLALETI----------------PAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAV 217 (581)
Q Consensus 155 ~~q~~~l~~~gvD~l~~ET~----------------~~~~E~~aa~~a~~~~-~~~pv~isft~~~~g~l~~G~~~~~~~ 217 (581)
.+-++.|.++||-.+-+|-. -+.+|...=++++++. .+.+++|---.+ -+ ..+..+++++
T Consensus 93 ~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTD--a~-~~~~g~deAI 169 (290)
T TIGR02321 93 HYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVE--AL-IAGLGQQEAV 169 (290)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEec--cc-cccCCHHHHH
Confidence 44578888999999999964 2556666666766643 244555533333 22 2355678999
Q ss_pred HHHHhhCCCCceEEEeCC--CChhhHHHHHHHHHhhCCCCceEEec
Q psy15811 218 TSCLLANPDQIQAIGVNC--VRPSHVSTLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 218 ~~~~~~~~~~~~~vGvNC--~~p~~~~~~l~~l~~~~~~~p~~~~p 261 (581)
+++......|+|+|-+-+ ..++++..+.+.+.. .+|+++.|
T Consensus 170 ~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~---p~pv~~~~ 212 (290)
T TIGR02321 170 RRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPG---KVPLVLVP 212 (290)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCC---CCCeEEec
Confidence 887655579999999986 368888888776532 36787665
No 310
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=60.27 E-value=2.1e+02 Score=29.37 Aligned_cols=178 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhcccccccc-----------ccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccc
Q psy15811 40 EPEACVETHRDFIRAGADIIQSS-----------CYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLN 108 (581)
Q Consensus 40 ~Pe~v~~iH~~yl~AGAdiI~Tn-----------Tf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~ 108 (581)
++|...++-+.-+++|||+|+-- |=|.+..+--+.|++ .++..++.+++++.....
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t-------~~~~lel~~~~r~~~~~~------ 95 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVT-------LEDTLELVEEIRAKGVKV------ 95 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHhcCCCC------
Q ss_pred ccccccCCCeEEEeecCC---------cCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHH
Q psy15811 109 KTFNLLTGHIETAASIGP---------YGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKE 179 (581)
Q Consensus 109 ~~~~~~~~~~~VagsiGP---------~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E 179 (581)
++.+.+=.-| +..+-..| .+|--..++..++.. .+++.++ +.|+|.+.+=+-.+.+|
T Consensus 96 --------Pivlm~Y~Npi~~~Gie~F~~~~~~~G--vdGlivpDLP~ee~~-~~~~~~~---~~gi~~I~lvaPtt~~~ 161 (265)
T COG0159 96 --------PIVLMTYYNPIFNYGIEKFLRRAKEAG--VDGLLVPDLPPEESD-ELLKAAE---KHGIDPIFLVAPTTPDE 161 (265)
T ss_pred --------CEEEEEeccHHHHhhHHHHHHHHHHcC--CCEEEeCCCChHHHH-HHHHHHH---HcCCcEEEEeCCCCCHH
Q ss_pred HHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHH
Q psy15811 180 ALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRC 247 (581)
Q Consensus 180 ~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~ 247 (581)
-...+....+ +.=+.+|++-.++-+...-..+.+.++++.+.. .-|.++|+-=+.|+++.++.+.
T Consensus 162 rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~ 226 (265)
T COG0159 162 RLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA 226 (265)
T ss_pred HHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh
No 311
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=60.24 E-value=2.2e+02 Score=29.78 Aligned_cols=230 Identities=16% Similarity=0.136 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhccccccccccccccccHhh-c-CCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeE
Q psy15811 42 EACVETHRDFIRAGADIIQSSCYQANVDNLTK-L-GYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIE 119 (581)
Q Consensus 42 e~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~-~-g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 119 (581)
+.+.+.-++-++.|-.-|.. |+......+. . |-....-.-+..+|++..++... +++
T Consensus 51 d~l~~~~~~~~~~Gi~~v~L--Fgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~p-------------------dl~ 109 (320)
T cd04824 51 NRLEEFLRPLVAKGLRSVIL--FGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFP-------------------ELL 109 (320)
T ss_pred HHHHHHHHHHHHCCCCEEEE--eCCCccccCCcCccccccCCCChHHHHHHHHHHhCC-------------------CcE
Confidence 45666667788888874433 5553221111 2 21111112367888888776642 444
Q ss_pred EEee--cCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc---CCCc
Q psy15811 120 TAAS--IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF---PGQK 194 (581)
Q Consensus 120 Vags--iGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~---~~~p 194 (581)
|..+ +-||...=+.|---. .+.++.++-.+...+|+-.++++|+|++.==-|-|- .+.++.+++.+. .+.|
T Consensus 110 vi~Dvclc~YT~hGHcGil~~---~g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLD~~G~~~~v~ 185 (320)
T cd04824 110 IACDVCLCEYTSHGHCGILYE---DGTINNEASVKRLAEVALAYAKAGAHIVAPSDMMDG-RVRAIKQALIQAGLGNKVS 185 (320)
T ss_pred EEEeeeccCCCCCCcceeECC---CCcCcCHHHHHHHHHHHHHHHHhCCCEEeccccccc-HHHHHHHHHHHCCCccCCe
Confidence 5444 556665444331100 135778999999999999999999999986666665 566777777753 2455
Q ss_pred EEEEEEEc---------------------CCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCC
Q psy15811 195 AWLSFSCK---------------------DDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHP 253 (581)
Q Consensus 195 v~isft~~---------------------~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~ 253 (581)
++ |-+.+ ...+-++-..-.+|++.+......|+|.+.|-=+.| -+.+++.+++..+
T Consensus 186 Im-SYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~~ 262 (320)
T cd04824 186 VM-SYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTP--YLDIVREAKDKHP 262 (320)
T ss_pred ee-ehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHhcc
Confidence 43 43321 011233444555677665444468899999987765 4678888888623
Q ss_pred CCceEEecCCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc
Q psy15811 254 TVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA 317 (581)
Q Consensus 254 ~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn 317 (581)
++|+.+|=-+| .++ .|+.. .. .+ | ++..+.+.+.+..+-+| +|.|.
T Consensus 263 ~~PvaaYqVSG------EYa-MikaA--a~--~G--~-----iDe~~~~~Esl~~ikRAGAd~IiTY 311 (320)
T cd04824 263 DLPLAVYHVSG------EYA-MLHAA--AE--AG--A-----FDLKRAVLEAMTGFRRAGADIIITY 311 (320)
T ss_pred CCCEEEEEccH------HHH-HHHHH--HH--cC--C-----CcHHHHHHHHHHHHHhcCCCEEEee
Confidence 89999996665 110 01010 00 11 2 56677888888999998 66665
No 312
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=60.19 E-value=2.3e+02 Score=29.77 Aligned_cols=127 Identities=15% Similarity=0.118 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q psy15811 341 MTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRA 420 (581)
Q Consensus 341 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~ 420 (581)
++-++..+..+..|++|+.. .+.|=+-+|-.|. -.++.++...-.-.+++++..+|.+ +.
T Consensus 108 l~~eeNi~~T~~vve~Ah~~------------gv~VEaElG~vgg-~ed~~~~~~~~~~~TdPeeA~~Fv~-------~T 167 (307)
T PRK05835 108 HAFEENLELTSKVVKMAHNA------------GVSVEAELGRLMG-IEDNISVDEKDAVLVNPKEAEQFVK-------ES 167 (307)
T ss_pred CCHHHHHHHHHHHHHHHHHc------------CCEEEEEecccCC-ccCCcccccccccCCCHHHHHHHHH-------hh
Confidence 33555556667777776653 2667666666642 1222111111000245665555544 35
Q ss_pred CCCEEEec--ccCCH----HHHH---HHHHHHHhcCCCeEEEEEEE--cCC---------CcC--CCCCcHHHHHHHHHh
Q psy15811 421 GVDYLALE--TIPAE----KEAL---ALVKLLREFPGQKAWLSFSC--KDD---------THT--SHGELISSAVTSCLL 478 (581)
Q Consensus 421 gvD~i~~E--T~p~~----~Ea~---a~~~~~~~~~~~pv~iSft~--~~~---------~~l--~~G~~~~~~~~~l~~ 478 (581)
|||.|.+- |..-. .+.+ ..++.+++..++|..+|=.. .++ |.+ .-|+++++..+.+
T Consensus 168 gvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai-- 245 (307)
T PRK05835 168 QVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESV-- 245 (307)
T ss_pred CCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHH--
Confidence 99997653 32210 0111 23344454468898777632 221 222 2367777766655
Q ss_pred hCCCCceEEEECC
Q psy15811 479 ANPDQIQAIGVNC 491 (581)
Q Consensus 479 ~~~~~~~~iGiNC 491 (581)
..++.=|.|+.
T Consensus 246 --~~GI~KiNi~T 256 (307)
T PRK05835 246 --KGGINKVNTDT 256 (307)
T ss_pred --HcCceEEEeCh
Confidence 33555455555
No 313
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=60.14 E-value=59 Score=35.07 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=24.0
Q ss_pred CCcEEEEEc-cCCHHHHHHHHHHHHh-cCCC
Q psy15811 165 GVDYLALET-IPAEKEALALVKLLRE-FPGQ 193 (581)
Q Consensus 165 gvD~l~~ET-~~~~~E~~aa~~a~~~-~~~~ 193 (581)
-.|++|+|| -|++++++.-.+++++ +|+.
T Consensus 283 yaDl~W~ET~~Pdle~ak~Fae~Ih~~~P~~ 313 (433)
T COG2224 283 YADLLWCETSTPDLEEARQFAEAIHAKYPGK 313 (433)
T ss_pred ccceEEEecCCCCHHHHHHHHHHHHHhCCcc
Confidence 359999998 4899999999999985 4553
No 314
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=59.67 E-value=1.9e+02 Score=30.83 Aligned_cols=75 Identities=20% Similarity=0.135 Sum_probs=47.2
Q ss_pred HHHHHHHHHHH--CCCcEEEEEc---------------cCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHH
Q psy15811 153 WHRPNVEALVR--AGVDYLALET---------------IPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISS 215 (581)
Q Consensus 153 ~~~~q~~~l~~--~gvD~l~~ET---------------~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~ 215 (581)
....-++.+.+ .|||++=+|- ..+.+|+...++.+.+...+|+++ +..|.+.+.
T Consensus 185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vv---------lsgG~~~~~ 255 (340)
T PRK12858 185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIF---------LSAGVSPEL 255 (340)
T ss_pred HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEE---------ECCCCCHHH
Confidence 44455667774 8999997763 235666666666665556899886 334455555
Q ss_pred HHHHHHhhCCCCceEEEeCCC
Q psy15811 216 AVTSCLLANPDQIQAIGVNCV 236 (581)
Q Consensus 216 ~~~~~~~~~~~~~~~vGvNC~ 236 (581)
+.+.+..+...|+..-||-|+
T Consensus 256 f~~~l~~A~~aGa~f~Gvl~G 276 (340)
T PRK12858 256 FRRTLEFACEAGADFSGVLCG 276 (340)
T ss_pred HHHHHHHHHHcCCCccchhhh
Confidence 555554433466655788886
No 315
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=59.56 E-value=1.3e+02 Score=30.66 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=63.9
Q ss_pred HHHHHHhCCCCEEEec-ccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 413 NVEALVRAGVDYLALE-TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 413 ~~~~l~~~gvD~i~~E-T~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
.++...+.|+|.|-+- ....+.+++.+++.+|+ .+..|.+++..-. +.+.+..++.+......+++.|.+--
T Consensus 87 ~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~-~G~~v~~~~~~a~------~~~~~~~~~~~~~~~~~g~~~i~l~D 159 (266)
T cd07944 87 LLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKE-KGYEVFFNLMAIS------GYSDEELLELLELVNEIKPDVFYIVD 159 (266)
T ss_pred HHHHHhcCCcCEEEEecccccHHHHHHHHHHHHH-CCCeEEEEEEeec------CCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 3555667899986554 34558888888888887 4777776664421 24444444433322344667666654
Q ss_pred ----CCCccchHHHHHHHhhCCC-CeEEEeeC
Q psy15811 492 ----VRPSHVSTLVRCIKQSHPT-VQTIVYPN 518 (581)
Q Consensus 492 ----~~p~~~~~~l~~l~~~~~~-~pl~~ypN 518 (581)
..|+.+..+++.++...++ +|+.+...
T Consensus 160 T~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~H 191 (266)
T cd07944 160 SFGSMYPEDIKRIISLLRSNLDKDIKLGFHAH 191 (266)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 3689999999999876522 78877664
No 316
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=59.54 E-value=2.4e+02 Score=30.89 Aligned_cols=195 Identities=11% Similarity=0.077 Sum_probs=97.0
Q ss_pred EEEeCCC-ChhhHHHHHHHHHhhCCCCceEEecCCCccccCCCc-----------hhhhccccCcc---------cCCCC
Q psy15811 230 AIGVNCV-RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSF-----------TSQVSRHTIKD---------VDGHP 288 (581)
Q Consensus 230 ~vGvNC~-~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~-----------gt~L~~~~g~~---------~~g~~ 288 (581)
+|-==|+ +|..+..+|+.-+. .+.|+.+-..+.=.--+||+ -..+....|.+ -.|..
T Consensus 18 gI~sVCsahp~VieAAl~~a~~--~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn 95 (426)
T PRK15458 18 GIYAVCSAHPLVLEAAIRYALA--NDSPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLGPN 95 (426)
T ss_pred eEEEecCCCHHHHHHHHHHHhh--cCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCc
Confidence 3333355 89888887777666 46787777776644456874 11222222332 11222
Q ss_pred cccccccCCChHHHHHHHHHHHHH-----HHhhcCCcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15811 289 LWSSVYLTTEPEACVETHRDFIRG-----HIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVD 363 (581)
Q Consensus 289 lws~~~~~~~Pe~v~~vh~~yl~a-----iI~Tna~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~ 363 (581)
-|-.+--.+.-+.-+++.+.|++| .|-+. -. ..+ .... ++. +.+.+++++|++-|-+.
T Consensus 96 ~Wq~lpa~eAM~~A~~li~ayV~AGF~kIHLD~S--m~---cag--------dp~p-L~d---~~vA~Raa~L~~~aE~~ 158 (426)
T PRK15458 96 RWQNLPAAQAMANADDLIKSYVAAGFKKIHLDCS--MS---CAD--------DPIP-LTD---EIVAERAARLAKIAEET 158 (426)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCceEEecCC--CC---CCC--------CCCC-CCh---HHHHHHHHHHHHHHHHH
Confidence 364211111112345677888888 11121 11 000 0112 322 24567788887744322
Q ss_pred hhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCE-------EEe----ccc--
Q psy15811 364 YLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDY-------LAL----ETI-- 430 (581)
Q Consensus 364 ~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~-------i~~----ET~-- 430 (581)
..+.......+||+|.==|.+..... .-.-...++.+....+....-++|.+.|.+- |++ |+-
T Consensus 159 a~~~~~~~~~vYvIGTEvP~pGGa~~----~~~~~~vTs~e~~~~Ti~~h~~af~~~GL~~aw~rvi~~VVQpGVef~~~ 234 (426)
T PRK15458 159 CREHFGESDLVYVIGTEVPVPGGAHE----TLSELAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIGLVVQPGVEFDHT 234 (426)
T ss_pred HHHhcCCCCCeEEeccccCCCCchhh----hccccCCCCHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeecCc
Confidence 11111123468999885544321110 0001123567777777777767888877533 221 211
Q ss_pred ----CCHHHHHHHHHHHHhcC
Q psy15811 431 ----PAEKEALALVKLLREFP 447 (581)
Q Consensus 431 ----p~~~Ea~a~~~~~~~~~ 447 (581)
.+...++.+...+++++
T Consensus 235 ~V~~y~~~~A~~Ls~~~~~~~ 255 (426)
T PRK15458 235 NVIDYQPEKASALSQMVENYE 255 (426)
T ss_pred CccccCHHHHHHHHHHHHhCC
Confidence 12667778888887743
No 317
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=59.48 E-value=86 Score=31.42 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=36.8
Q ss_pred chHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCchHHHH
Q psy15811 497 VSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQ 566 (581)
Q Consensus 497 ~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~ 566 (581)
+.+.+++++.. .--+++++.-|..|... ..+...+.++++++.||.+|=| ..|+.++
T Consensus 173 i~~~i~~~r~~--~D~vIv~~HwG~e~~~~--------p~~~q~~~a~~lidaGaDiIiG---~HpHv~q 229 (250)
T PF09587_consen 173 IKEDIREARKK--ADVVIVSLHWGIEYENY--------PTPEQRELARALIDAGADIIIG---HHPHVIQ 229 (250)
T ss_pred HHHHHHHHhcC--CCEEEEEeccCCCCCCC--------CCHHHHHHHHHHHHcCCCEEEe---CCCCccc
Confidence 44444555532 24699999998765433 1235677889999999988754 5555554
No 318
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=59.44 E-value=1.8e+02 Score=29.62 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=54.2
Q ss_pred HHHHHHCCCcEEEEEc-----------cCCHHH----HHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHh
Q psy15811 158 VEALVRAGVDYLALET-----------IPAEKE----ALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 222 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET-----------~~~~~E----~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~ 222 (581)
++...+.|+|.+-+-. -.+.+| ++.+++.+|+. ++.|.+++ .+- .+.+++.....+..
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~-G~~v~~~~--eda----~r~~~~~l~~~~~~ 149 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSK-GIEVRFSS--EDS----FRSDLVDLLRVYRA 149 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEE--Eee----CCCCHHHHHHHHHH
Confidence 5556678999876532 112334 44445566554 66655544 322 23334433322222
Q ss_pred hCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEec
Q psy15811 223 ANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 223 ~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~p 261 (581)
....+++.|.+-=+ .|+.+..+++.+++. .++||.+..
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~~~i~~H~ 191 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VSCDIEFHG 191 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cCCeEEEEE
Confidence 22457776665443 499999999999885 446665543
No 319
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=59.38 E-value=1e+02 Score=36.28 Aligned_cols=106 Identities=10% Similarity=0.190 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHCCCcEE-EEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCC-CC---CHHHHHHHHHh
Q psy15811 148 ADLIAWHRPNVEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSH-GE---LISSAVTSCLL 222 (581)
Q Consensus 148 ~~~~~~~~~q~~~l~~~gvD~l-~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~-G~---~~~~~~~~~~~ 222 (581)
|-+...|-+|. ..+|+|+| +|-.+.+++.++-+++++++. +.-+=+.+++. |.+++ +. ++.=-+.-+.+
T Consensus 629 DnVi~~Fvkqa---a~~GIDvFRiFDsLNwv~~M~vaidAV~e~-gkv~EatiCYT--GDildp~r~kY~L~YY~~lA~e 702 (1149)
T COG1038 629 DNVIREFVKQA---AKSGIDVFRIFDSLNWVEQMRVAIDAVREA-GKVAEATICYT--GDILDPGRKKYTLDYYVKLAKE 702 (1149)
T ss_pred hHHHHHHHHHH---HhcCccEEEeehhhcchhhhhhHHHHHHhc-CCeEEEEEEec--cccCCCCcccccHHHHHHHHHH
Confidence 45555565554 37899998 899999999999999999986 54445555554 22222 21 22222222222
Q ss_pred hCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 223 ANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 223 ~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
....|+..+||-=. .|.....+++.|+.. .++||-+.
T Consensus 703 l~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~-~dlPIHlH 743 (1149)
T COG1038 703 LEKAGAHILAIKDMAGLLKPAAAYRLISALRET-VDLPIHLH 743 (1149)
T ss_pred HHhcCCcEEEehhhhhccCHHHHHHHHHHHHHh-cCCceEEe
Confidence 33588899999873 488899999999986 78888755
No 320
>PRK08185 hypothetical protein; Provisional
Probab=59.34 E-value=2.2e+02 Score=29.43 Aligned_cols=40 Identities=10% Similarity=-0.085 Sum_probs=29.3
Q ss_pred HHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEE
Q psy15811 160 ALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSC 201 (581)
Q Consensus 160 ~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~ 201 (581)
...+.|--+..|-+ .+++-++++++++.+. +.||+++++-
T Consensus 7 ~A~~~~yaV~AfN~-~n~e~~~avi~AAee~-~sPvIl~~~~ 46 (283)
T PRK08185 7 VAKEHQFAVGAFNV-ADSCFLRAVVEEAEAN-NAPAIIAIHP 46 (283)
T ss_pred HHHHcCceEEEEEe-CCHHHHHHHHHHHHHh-CCCEEEEeCc
Confidence 33345554555544 5889999999999986 8999998854
No 321
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=59.08 E-value=2.5e+02 Score=30.65 Aligned_cols=192 Identities=12% Similarity=0.088 Sum_probs=95.5
Q ss_pred CC-ChhhHHHHHHHHHhhCCCCceEEecCCCccccCCCc-----------hhhhccccCccc----C----CCCc-cccc
Q psy15811 235 CV-RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSF-----------TSQVSRHTIKDV----D----GHPL-WSSV 293 (581)
Q Consensus 235 C~-~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~-----------gt~L~~~~g~~~----~----g~~l-ws~~ 293 (581)
|+ +|..+..+|+.-+. .+.|+++-..+.=.-.+||+ -..+....|.+. . +||. |-.+
T Consensus 19 Csahp~VieAAl~~a~~--~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~l 96 (420)
T TIGR02810 19 CSAHPLVLEAAIRRARA--SGTPVLIEATSNQVNQFGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPWQHL 96 (420)
T ss_pred CCCCHHHHHHHHHHHhh--cCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCC
Confidence 55 89888887877666 46788877777644556874 112222223321 1 1332 6521
Q ss_pred ccCCChHHHHHHHHHHHHH---HHhhcCCcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy15811 294 YLTTEPEACVETHRDFIRG---HIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKP 370 (581)
Q Consensus 294 ~~~~~Pe~v~~vh~~yl~a---iI~Tna~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~ 370 (581)
--.+.-+.-+++...|++| -|.-.+|-.-. . |. .. ++. +.+.+++++|++-|-+........
T Consensus 97 pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca---~-d~-------~~-L~d---~~vAeRaa~L~~~aE~~~~~~~~~ 161 (420)
T TIGR02810 97 PADEAMAKAAALVDAYVEAGFTKIHLDASMGCA---G-DP-------AP-LDD---ATVAERAARLCAVAEAAATDRRGE 161 (420)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceEEecCCCCcc---C-CC-------cc-CCH---HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111122345677888888 11111111100 0 00 01 222 346678888887443222111112
Q ss_pred CCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCE-------EEec------cc----CCH
Q psy15811 371 SISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDY-------LALE------TI----PAE 433 (581)
Q Consensus 371 ~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~-------i~~E------T~----p~~ 433 (581)
...+||+|.==|.+..... .-.-...++.+....+....-++|.+.|.+. |++. +- .+.
T Consensus 162 ~~~vYvIGTEvP~pGGa~~----~~~~~~vTs~e~~~~ti~~h~~af~~~GL~~aw~rvi~~VVQpGvef~~~~V~~y~~ 237 (420)
T TIGR02810 162 TKPVYVIGTEVPVPGGALE----ALQTLAVTTPEAARATLRAHRKAFAARGLEDAWPRVIALVVQPGVEFDHHNVIHYQP 237 (420)
T ss_pred CCCeEEeccccCCCCchhh----hccccCCCCHHHHHHHHHHHHHHHHHcCchhhhccceEEEecCCeeECCCceeecCH
Confidence 3468999885554321110 0001123567777777776667788777533 2211 11 126
Q ss_pred HHHHHHHHHHHhcC
Q psy15811 434 KEALALVKLLREFP 447 (581)
Q Consensus 434 ~Ea~a~~~~~~~~~ 447 (581)
..++.....+++++
T Consensus 238 ~~A~~Ls~~~~~~~ 251 (420)
T TIGR02810 238 ERAQALSQVIDNTP 251 (420)
T ss_pred HHHHHHHHHHHhCC
Confidence 77778888887743
No 322
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=58.84 E-value=2.1e+02 Score=28.91 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCCcEEEE-EccC--CHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHH
Q psy15811 152 AWHRPNVEALVRAGVDYLAL-ETIP--AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCL 221 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~-ET~~--~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~ 221 (581)
+++.+.++.+.+.|+|.|-+ -|+. ...++...+..+++. .|+-+.|-+=++ .|..+..++.++.
T Consensus 139 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~--~~~~l~~H~Hn~----~Gla~An~laAi~ 205 (259)
T cd07939 139 DFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAA--TDLPLEFHAHND----LGLATANTLAAVR 205 (259)
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCeEEEEecCC----CChHHHHHHHHHH
Confidence 45666677778889998744 4554 677888888888853 234456655443 5666777766653
No 323
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=58.84 E-value=2.5e+02 Score=29.91 Aligned_cols=134 Identities=13% Similarity=0.019 Sum_probs=67.7
Q ss_pred cccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCC--CCCC
Q psy15811 322 PYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSG--HYVD 399 (581)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g--~y~~ 399 (581)
+|.+...|+|. ++-++..++.+..|++|+.. .+.|=+-+|-.|. -.++..... .-.-
T Consensus 123 GftSVMiDgS~--------lp~eENI~~TkevVe~Ah~~------------gvsVEaElG~igg-~ed~~~~~~~~~~~~ 181 (345)
T cd00946 123 LFSSHMLDLSE--------EPLEENIEICKKYLERMAKI------------NMWLEMEIGITGG-EEDGVDNSGVDNAEL 181 (345)
T ss_pred CCceEEeeCCC--------CCHHHHHHHHHHHHHHHHHc------------CCEEEEEecccCC-cccCccccccccccc
Confidence 34445555554 33555556666666666543 3667666666642 122211110 0000
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec--cc--------CC--HHHHHHHHHHHHhcC------CCeEEEEEEEcCCC
Q psy15811 400 SMTEADLIAWHRPNVEALVRAGVDYLALE--TI--------PA--EKEALALVKLLREFP------GQKAWLSFSCKDDT 461 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~gvD~i~~E--T~--------p~--~~Ea~a~~~~~~~~~------~~pv~iSft~~~~~ 461 (581)
-+++++..+|.++-.. ..|||.|++- |. |. ..-++.+.+.+++.. ++|.++|=
T Consensus 182 yTdPeeA~~Fv~~t~~---~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHG------ 252 (345)
T cd00946 182 YTQPEDVWYVYEALSK---ISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHG------ 252 (345)
T ss_pred CCCHHHHHHHHHHhcc---CCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeC------
Confidence 2477777777765321 1488876543 22 22 333334434334322 46666554
Q ss_pred cCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 462 HTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 462 ~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
.+|.+.++.-+.+ ..++.=|.|+.
T Consensus 253 --gSG~~~e~i~kai----~~GI~KiNi~T 276 (345)
T cd00946 253 --GSGSTKEEIREAI----SYGVVKMNIDT 276 (345)
T ss_pred --CCCCCHHHHHHHH----HcCCeeEEeCc
Confidence 3578888766655 33556566666
No 324
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=58.53 E-value=2.3e+02 Score=29.33 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHh
Q psy15811 341 MTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYS-GHYVDSMTEADLIAWHRPNVEALVR 419 (581)
Q Consensus 341 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~-g~y~~~~~~~~~~~~~~~~~~~l~~ 419 (581)
++-++..++.+..|++|+.. .+-|=|-+|-.|. -.++.+.. .. .--+++++..+|.+ +
T Consensus 108 lp~eeNi~~T~~vv~~Ah~~------------gvsVEaElG~vgg-~e~~~~~~~~~-~~~T~pe~a~~Fv~-------~ 166 (284)
T PRK12857 108 LPLEENIALTKKVVEIAHAV------------GVSVEAELGKIGG-TEDDITVDERE-AAMTDPEEARRFVE-------E 166 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHc------------CCEEEEEeeecCC-ccCCCCcccch-hhcCCHHHHHHHHH-------H
Confidence 33455556666666666642 2667666666542 12221110 01 00235555555543 4
Q ss_pred CCCCEEEec--cc-------CCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEEC
Q psy15811 420 AGVDYLALE--TI-------PAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 490 (581)
Q Consensus 420 ~gvD~i~~E--T~-------p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiN 490 (581)
.|||.|.+- |. |.+ +. ..++.+++..++|..+|= .+|.+-++.-+.+ ..++.=|.|+
T Consensus 167 TgvD~LAvaiGt~HG~y~~~p~L-d~-~~L~~i~~~~~vPLVlHG--------gSG~~~e~~~~ai----~~Gi~KiNi~ 232 (284)
T PRK12857 167 TGVDALAIAIGTAHGPYKGEPKL-DF-DRLAKIKELVNIPIVLHG--------SSGVPDEAIRKAI----SLGVRKVNID 232 (284)
T ss_pred HCCCEEeeccCccccccCCCCcC-CH-HHHHHHHHHhCCCEEEeC--------CCCCCHHHHHHHH----HcCCeEEEeC
Confidence 589998654 32 221 11 233344444577876554 3577777765554 3355555666
Q ss_pred C
Q psy15811 491 C 491 (581)
Q Consensus 491 C 491 (581)
.
T Consensus 233 T 233 (284)
T PRK12857 233 T 233 (284)
T ss_pred c
Confidence 5
No 325
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.49 E-value=1.2e+02 Score=32.29 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=54.1
Q ss_pred CCCCHHH---HHHHHHHHHHHHHHCCCcEEEEEc-------------cCC-HHH-----------HHHHHHHHHhcCC--
Q psy15811 143 DSMTEAD---LIAWHRPNVEALVRAGVDYLALET-------------IPA-EKE-----------ALALVKLLREFPG-- 192 (581)
Q Consensus 143 ~~~~~~~---~~~~~~~q~~~l~~~gvD~l~~ET-------------~~~-~~E-----------~~aa~~a~~~~~~-- 192 (581)
+.+|.+| +.+.|.+-++-..++|.|.|=+=- ... .+| +..+++++|+..+
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 5677654 566777777777789999985431 111 111 3445666664323
Q ss_pred --CcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 193 --QKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 193 --~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
.++.|.+.+..+.....|.+.++.+..+..+...+++.|-|-+
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 3444555544333445677777765444333357788888865
No 326
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=58.33 E-value=99 Score=34.92 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=61.9
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEE-EcCCCcCCCCCCHHHHHHHHHhhCCCCceEEE
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFS-CKDDTHTSHGELISSAVTSCLLANPDQIQAIG 232 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft-~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vG 232 (581)
|.+.++..++.|+|++=+|-...- ++...+..++. .+..+++|+- +. ++++-+.+.+.+..+. ..++|.+=
T Consensus 99 ~~~ll~~~~~~~~d~iDiEl~~~~-~~~~~~~~~~~-~~~~vI~S~H~f~---~tP~~~el~~~~~~~~---~~gaDi~K 170 (529)
T PLN02520 99 RQDALRLAMELGADYVDVELKVAH-EFINSISGKKP-EKCKVIVSSHNYE---NTPSVEELGNLVARIQ---ATGADIVK 170 (529)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCch-hHHHHHHhhhh-cCCEEEEEecCCC---CCCCHHHHHHHHHHHH---HhCCCEEE
Confidence 444556666778999999965443 55555666654 3788999875 32 2343333444444443 57789988
Q ss_pred eCCC--ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 233 VNCV--RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 233 vNC~--~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
+-+. .+++...+++.... .+.|++.+
T Consensus 171 ia~~~~~~~D~~~ll~~~~~--~~~p~i~~ 198 (529)
T PLN02520 171 IATTALDITDVARMFQITVH--SQVPTIGL 198 (529)
T ss_pred EecCCCCHHHHHHHHHHHhh--cCCCEEEE
Confidence 8886 47777777765443 46787754
No 327
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=58.17 E-value=27 Score=43.12 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHhcCCCeEEEEEE
Q psy15811 405 DLIAWHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLREFPGQKAWLSFS 456 (581)
Q Consensus 405 ~~~~~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~~~~~pv~iSft 456 (581)
.-.++|.+.++.+.+.|+|.|.+-++-- ..++..+++++++..++|+-+|+.
T Consensus 686 ~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~H 740 (1143)
T TIGR01235 686 YDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTH 740 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3468899999999999999999987765 677888888888656788766663
No 328
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=57.83 E-value=1.3e+02 Score=29.29 Aligned_cols=106 Identities=15% Similarity=0.241 Sum_probs=60.1
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
+|++...++|++|++- |... ..+++..++ .++|++... .++.++..++ .. +.+.+=+-=
T Consensus 71 e~a~~a~~aGA~FivS---P~~~--~~v~~~~~~-~~i~~iPG~-----------~TptEi~~A~--~~--G~~~vK~FP 129 (196)
T PF01081_consen 71 EQAEAAIAAGAQFIVS---PGFD--PEVIEYARE-YGIPYIPGV-----------MTPTEIMQAL--EA--GADIVKLFP 129 (196)
T ss_dssp HHHHHHHHHT-SEEEE---SS----HHHHHHHHH-HTSEEEEEE-----------SSHHHHHHHH--HT--T-SEEEETT
T ss_pred HHHHHHHHcCCCEEEC---CCCC--HHHHHHHHH-cCCcccCCc-----------CCHHHHHHHH--HC--CCCEEEEec
Confidence 7888888999999984 4443 345566666 489999765 3577777776 22 334333322
Q ss_pred CCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeec
Q psy15811 492 VRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGC 557 (581)
Q Consensus 492 ~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGC 557 (581)
.+.-.=...+|.|+.-.++.++ .|-.|-..+ .+.+|++.|+..+|+-
T Consensus 130 A~~~GG~~~ik~l~~p~p~~~~--~ptGGV~~~-----------------N~~~~l~ag~~~vg~G 176 (196)
T PF01081_consen 130 AGALGGPSYIKALRGPFPDLPF--MPTGGVNPD-----------------NLAEYLKAGAVAVGGG 176 (196)
T ss_dssp TTTTTHHHHHHHHHTTTTT-EE--EEBSS--TT-----------------THHHHHTSTTBSEEEE
T ss_pred chhcCcHHHHHHHhccCCCCeE--EEcCCCCHH-----------------HHHHHHhCCCEEEEEC
Confidence 1111113566777754334454 476663221 1378999997666553
No 329
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=57.59 E-value=51 Score=34.74 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=53.6
Q ss_pred CC-cEEEEEccCCHHHHHHHHHHHHhc----CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCChh
Q psy15811 165 GV-DYLALETIPAEKEALALVKLLREF----PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPS 239 (581)
Q Consensus 165 gv-D~l~~ET~~~~~E~~aa~~a~~~~----~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~ 239 (581)
|+ |++.=|-+.+..-+..--+-.+.. ...|+.+++ -|.+++...+++......+++.|=+||++|.
T Consensus 34 ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl---------~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~ 104 (323)
T COG0042 34 GAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQL---------GGSDPELLAEAAKIAEELGADIIDLNCGCPS 104 (323)
T ss_pred CCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEe---------cCCCHHHHHHHHHHHHhcCCCEEeeeCCCCh
Confidence 77 999888877664444322222211 257777766 3444443333332233566899999997664
Q ss_pred -----------------hHHHHHHHHHhhCC-CCceEEecCCC
Q psy15811 240 -----------------HVSTLVRCIKQSHP-TVQTIVYPNKG 264 (581)
Q Consensus 240 -----------------~~~~~l~~l~~~~~-~~p~~~~pnag 264 (581)
.+.++++.+... . ++|++++---|
T Consensus 105 ~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~a-v~~iPVTVKiRlG 146 (323)
T COG0042 105 PKVVKGGAGAALLKNPELLAEIVKAMVEA-VGDIPVTVKIRLG 146 (323)
T ss_pred HHhcCCCcchhhcCCHHHHHHHHHHHHHh-hCCCCeEEEEecc
Confidence 344666777765 4 58888885444
No 330
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=57.40 E-value=2.9e+02 Score=30.78 Aligned_cols=153 Identities=8% Similarity=-0.005 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE----Eec---ccCCHHHHHHHHHHHHh---cCCCeEEEEEEEcCCCcCCCCCcHH
Q psy15811 401 MTEADLIAWHRPNVEALVRAGVDYL----ALE---TIPAEKEALALVKLLRE---FPGQKAWLSFSCKDDTHTSHGELIS 470 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~gvD~i----~~E---T~p~~~Ea~a~~~~~~~---~~~~pv~iSft~~~~~~l~~G~~~~ 470 (581)
++++++.+..++ +...|+|+| .+- -.|-.+-++++.+++++ .++...+-++.+ +|.+..
T Consensus 173 Lsp~~~a~~~y~----~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~Ni-------T~~~~~ 241 (468)
T PRK04208 173 LSAKNYGRVVYE----ALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNV-------TAPTME 241 (468)
T ss_pred CCHHHHHHHHHH----HHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEec-------CCCCHH
Confidence 666666655444 456899998 222 12334455566666663 477776666654 344455
Q ss_pred HHHHHHHhhCCCCceEEEECC-C-CCccchHHHHHHHhhCCCCeEEEeeCCCCCccccc-ccccCCcCHHHHHHHHHHHH
Q psy15811 471 SAVTSCLLANPDQIQAIGVNC-V-RPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVH-MKWLDTEDEYSILHYVPQWL 547 (581)
Q Consensus 471 ~~~~~l~~~~~~~~~~iGiNC-~-~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~-~~~~~~~~~~~~~~~~~~w~ 547 (581)
+..+..+.....+..++.||. + +.. +...|....... +.|+...|+.-..+..+. .++ +. .. +.+-|+
T Consensus 242 em~~ra~~~~e~G~~~~mv~~~~~G~~-~l~~l~~~~~~~-~l~IhaHrA~~ga~~r~~~~Gi----s~--~v-l~Kl~R 312 (468)
T PRK04208 242 EMYKRAEFAKELGSPIVMIDVVTAGWT-ALQSLREWCRDN-GLALHAHRAMHAAFTRNPNHGI----SF--RV-LAKLLR 312 (468)
T ss_pred HHHHHHHHHHHhCCCEEEEeccccccH-HHHHHHHhhhcC-CcEEEecCCcccccccCcCCCC----CH--HH-HHHHHH
Confidence 555544333345667778887 2 333 333333332233 699999999765554321 111 11 22 444455
Q ss_pred HcCCcE--E---eecCCCchHHHHHHHHHHh
Q psy15811 548 EEGVNI--I---GGCCEVTSYEIQQMRIMID 573 (581)
Q Consensus 548 ~~G~~i--i---GGCCGt~P~hI~al~~~l~ 573 (581)
-.|+.. + +|==..+++....+++.+.
T Consensus 313 LaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~ 343 (468)
T PRK04208 313 LIGVDHLHTGTVVGKLEGDRAEVLGYYDILR 343 (468)
T ss_pred HcCCCccccCCccCCccCCHHHHHHHHHHHh
Confidence 566532 2 5545577888888877664
No 331
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=57.23 E-value=17 Score=37.39 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEE
Q psy15811 411 RPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSC 457 (581)
Q Consensus 411 ~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~ 457 (581)
-+++++..++|+|.|+.|-+.+..|.+..+++++ .|+.+.++-
T Consensus 169 I~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~----~pl~~N~t~ 211 (289)
T COG2513 169 IERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP----VPLPANITE 211 (289)
T ss_pred HHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC----CCeeeEeec
Confidence 3888999999999999999999999988888876 566666653
No 332
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=57.04 E-value=2.2e+02 Score=28.57 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=37.2
Q ss_pred CCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-C----------------CCccchHHHHHHHhhCCC
Q psy15811 448 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC-V----------------RPSHVSTLVRCIKQSHPT 510 (581)
Q Consensus 448 ~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC-~----------------~p~~~~~~l~~l~~~~~~ 510 (581)
..|+++++. |.++++.++.+... ...+++|-||| | .|+.+..+++.++.. +
T Consensus 67 ~~~vivnv~---------~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~ 134 (231)
T TIGR00736 67 RALVSVNVR---------FVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--N 134 (231)
T ss_pred cCCEEEEEe---------cCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--C
Confidence 568888883 44555555544222 33678999999 4 333455566666643 5
Q ss_pred CeEEEeeCCC
Q psy15811 511 VQTIVYPNKG 520 (581)
Q Consensus 511 ~pl~~ypNag 520 (581)
+|+.+.--.+
T Consensus 135 ~PVsvKiR~~ 144 (231)
T TIGR00736 135 KPIFVKIRGN 144 (231)
T ss_pred CcEEEEeCCC
Confidence 7887765544
No 333
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=57.00 E-value=71 Score=35.47 Aligned_cols=102 Identities=9% Similarity=0.027 Sum_probs=60.9
Q ss_pred HHHHHHHHHHCCCcEE-----EE-EccCCHHH-HHHHHHHHHh---cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhh
Q psy15811 154 HRPNVEALVRAGVDYL-----AL-ETIPAEKE-ALALVKLLRE---FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 223 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l-----~~-ET~~~~~E-~~aa~~a~~~---~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~ 223 (581)
|.+++..+..+|+|+| +. .++.-.+| ++++.+++++ .++.+.+-++.+ +|.+..+..+++.-.
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~Ni-------T~~~~~em~~ra~~~ 250 (468)
T PRK04208 178 YGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNV-------TAPTMEEMYKRAEFA 250 (468)
T ss_pred HHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEec-------CCCCHHHHHHHHHHH
Confidence 5556667778999997 33 33444443 4445555553 245555544443 344456666555444
Q ss_pred CCCCceEEEeCCC--ChhhHHHHHHHHHhhCCCCceEEecCCC
Q psy15811 224 NPDQIQAIGVNCV--RPSHVSTLVRCIKQSHPTVQTIVYPNKG 264 (581)
Q Consensus 224 ~~~~~~~vGvNC~--~p~~~~~~l~~l~~~~~~~p~~~~pnag 264 (581)
...|+.++.||.. |... ...|+..... .++||...|+-.
T Consensus 251 ~e~G~~~~mv~~~~~G~~~-l~~l~~~~~~-~~l~IhaHrA~~ 291 (468)
T PRK04208 251 KELGSPIVMIDVVTAGWTA-LQSLREWCRD-NGLALHAHRAMH 291 (468)
T ss_pred HHhCCCEEEEeccccccHH-HHHHHHhhhc-CCcEEEecCCcc
Confidence 4578899999994 5543 3444444333 688999888753
No 334
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=56.98 E-value=30 Score=36.74 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHh---c-CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCc
Q psy15811 153 WHRPNVEALVRAGVDYLALETIPAEKEALALVKLLRE---F-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQI 228 (581)
Q Consensus 153 ~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~---~-~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~ 228 (581)
.--+|+..|.++|+|++= =|+|+.+++++.-+..++ . ..+|++.-+.|+. .-|+.++ + . +
T Consensus 32 atv~QI~~L~~aGceivR-vavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~----------~lAl~a~-~---~-v 95 (359)
T PF04551_consen 32 ATVAQIKRLEEAGCEIVR-VAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDY----------RLALEAI-E---A-V 95 (359)
T ss_dssp HHHHHHHHHHHCT-SEEE-EEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTC----------HHHHHHH-H---C--
T ss_pred HHHHHHHHHHHcCCCEEE-EcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCH----------HHHHHHH-H---H-h
Confidence 345899999999999975 378898777665555444 1 3799998776652 2244443 2 3 7
Q ss_pred eEEEeCCC-C-----------hhhHHHHHHHHHhhCCCCceEEecCCCccccCCCchhhhccccCcccCCCCcccccccC
Q psy15811 229 QAIGVNCV-R-----------PSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLT 296 (581)
Q Consensus 229 ~~vGvNC~-~-----------p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~ 296 (581)
+.|=+|=. - .+.+.++++..+.. ++|+=+=-|+|- +...+.+++ +
T Consensus 96 ~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~--~ipIRIGvN~GS------L~~~~~~ky------~--------- 152 (359)
T PF04551_consen 96 DKIRINPGNIVDEFQEELGSIREKVKEVVEAAKER--GIPIRIGVNSGS------LEKDILEKY------G--------- 152 (359)
T ss_dssp SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHH--T-EEEEEEEGGG------S-HHHHHHH------C---------
T ss_pred CeEEECCCcccccccccccchHHHHHHHHHHHHHC--CCCEEEeccccc------CcHHHHhhc------c---------
Confidence 88888875 2 56777888877774 678777777763 344555552 2
Q ss_pred CChHHHHHHHHHHHHH
Q psy15811 297 TEPEACVETHRDFIRG 312 (581)
Q Consensus 297 ~~Pe~v~~vh~~yl~a 312 (581)
.+|+.+.+-..+|++.
T Consensus 153 ~t~~amvesA~~~~~~ 168 (359)
T PF04551_consen 153 PTPEAMVESALEHVRI 168 (359)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 2777776666666664
No 335
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=56.94 E-value=35 Score=36.37 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=43.0
Q ss_pred CCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCC-HHHHHHHHHHHHh-cCC
Q psy15811 371 SISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPA-EKEALALVKLLRE-FPG 448 (581)
Q Consensus 371 ~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~-~~Ea~a~~~~~~~-~~~ 448 (581)
..+.+|+.++||... +.++++.|.++|+|+|++-+-.- -......++.+|+ +++
T Consensus 94 ~~~l~V~aavg~~~~------------------------~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~ 149 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDD------------------------DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPD 149 (352)
T ss_dssp TSCBCEEEEEESSTC------------------------HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTT
T ss_pred cccceEEEEecCCHH------------------------HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCC
Confidence 346899999999631 23899999999999999974333 3444556667764 566
Q ss_pred CeEEEEEE
Q psy15811 449 QKAWLSFS 456 (581)
Q Consensus 449 ~pv~iSft 456 (581)
+|++..=.
T Consensus 150 ~~viaGNV 157 (352)
T PF00478_consen 150 VPVIAGNV 157 (352)
T ss_dssp SEEEEEEE
T ss_pred ceEEeccc
Confidence 89886543
No 336
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.44 E-value=49 Score=34.02 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=44.0
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc-CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeC
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 234 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~-~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvN 234 (581)
+|+...+++|+|+|++.++ +.++++.+++.++.. ++..+.+| .|-+++.+.+.+ ..|+|+|.+-
T Consensus 193 eea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAs----------GgIt~~ni~~ya----~~GvD~IsvG 257 (273)
T PRK05848 193 EEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEAS----------GNITLENINAYA----KSGVDAISSG 257 (273)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEE----------CCCCHHHHHHHH----HcCCCEEEeC
Confidence 3455566899999999996 889999999876532 23333331 245565554333 4789999887
Q ss_pred CC
Q psy15811 235 CV 236 (581)
Q Consensus 235 C~ 236 (581)
+.
T Consensus 258 ~l 259 (273)
T PRK05848 258 SL 259 (273)
T ss_pred hh
Confidence 73
No 337
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=56.31 E-value=2.2e+02 Score=29.05 Aligned_cols=127 Identities=19% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCH
Q psy15811 354 VEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAE 433 (581)
Q Consensus 354 v~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~ 433 (581)
+-.++.++... .+.+|.+++|- +.|.... .+..+...+.+.++|+|.+=+|--.
T Consensus 65 i~h~~aV~Rga-------~~~~vv~DmPf------------~sy~~s~-----e~av~nA~rl~ke~GadaVKlEGg~-- 118 (261)
T PF02548_consen 65 IYHTKAVRRGA-------PNAFVVADMPF------------GSYQASP-----EQAVRNAGRLMKEAGADAVKLEGGA-- 118 (261)
T ss_dssp HHHHHHHHHH--------TSSEEEEE--T------------TSSTSSH-----HHHHHHHHHHHHTTT-SEEEEEBSG--
T ss_pred HHHHHHHHhcC-------CCceEEecCCc------------ccccCCH-----HHHHHHHHHHHHhcCCCEEEeccch--
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEEEcC------CCcCCCCCcHHHHHHHHHhhCC---CCceEEEECCCCCccchHHH-HH
Q psy15811 434 KEALALVKLLREFPGQKAWLSFSCKD------DTHTSHGELISSAVTSCLLANP---DQIQAIGVNCVRPSHVSTLV-RC 503 (581)
Q Consensus 434 ~Ea~a~~~~~~~~~~~pv~iSft~~~------~~~l~~G~~~~~~~~~l~~~~~---~~~~~iGiNC~~p~~~~~~l-~~ 503 (581)
|...+++.+-+ .++||+-|+=+.+ .|.=.-|.+.+++.+.+..... +++.+|-+-| +..-| +.
T Consensus 119 -~~~~~i~~l~~-~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~-----vp~~la~~ 191 (261)
T PF02548_consen 119 -EIAETIKALVD-AGIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLEC-----VPAELAKA 191 (261)
T ss_dssp -GGHHHHHHHHH-TT--EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEES-----BBHHHHHH
T ss_pred -hHHHHHHHHHH-CCCcEEEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeec-----CHHHHHHH
Q ss_pred HHhhCCCCeEE
Q psy15811 504 IKQSHPTVQTI 514 (581)
Q Consensus 504 l~~~~~~~pl~ 514 (581)
+.... ++|.+
T Consensus 192 It~~l-~IPtI 201 (261)
T PF02548_consen 192 ITEAL-SIPTI 201 (261)
T ss_dssp HHHHS-SS-EE
T ss_pred HHHhC-CCCEE
No 338
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=56.30 E-value=2.5e+02 Score=29.09 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q psy15811 341 MTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRA 420 (581)
Q Consensus 341 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~ 420 (581)
++-++..++.+..|++|+.. .+.|=|-+|-.|. -.++.+......--+++++..+|.+ +.
T Consensus 108 lp~eeNi~~T~evv~~Ah~~------------gv~VEaElG~igg-~ed~~~~~~~~~~~T~peea~~Fv~-------~T 167 (286)
T PRK12738 108 FPFAENVKLVKSVVDFCHSQ------------DCSVEAELGRLGG-VEDDMSVDAESAFLTDPQEAKRFVE-------LT 167 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHc------------CCeEEEEEEeeCC-ccCCcccccchhcCCCHHHHHHHHH-------Hh
Confidence 33555556667777776664 2566555555542 1122111110000235666655544 35
Q ss_pred CCCEEEecc---------cCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 421 GVDYLALET---------IPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 421 gvD~i~~ET---------~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
|||.|.+-- -|.+. --.++.+++..++|..+|= .+|.+-++.-+.+ ..++.=|.|+-
T Consensus 168 gvD~LAvaiGt~HG~Y~~~p~Ld--fd~l~~I~~~~~vPLVLHG--------gSG~~~e~~~kai----~~GI~KiNi~T 233 (286)
T PRK12738 168 GVDSLAVAIGTAHGLYSKTPKID--FQRLAEIREVVDVPLVLHG--------ASDVPDEFVRRTI----ELGVTKVNVAT 233 (286)
T ss_pred CCCEEEeccCcccCCCCCCCcCC--HHHHHHHHHHhCCCEEEeC--------CCCCCHHHHHHHH----HcCCeEEEeCc
Confidence 999987642 13221 1233444444688887654 3577766654444 33555555555
No 339
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=56.20 E-value=98 Score=31.70 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCH
Q psy15811 144 SMTEADLIAWHRPNVEALVRAGVDYLALETIPAE 177 (581)
Q Consensus 144 ~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~ 177 (581)
..+.+..+.+.++.+-.|...|+|+++||+|.+.
T Consensus 252 ~pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd~ 285 (305)
T COG5309 252 VPSVANQKIAVQEILNALRSCGYDVFVFEAFDDD 285 (305)
T ss_pred CCChhHHHHHHHHHHhhhhccCccEEEeeecccc
Confidence 3578889999999999999999999999999764
No 340
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=56.02 E-value=1e+02 Score=30.35 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=50.4
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCC-----C-cCCCCCcHHHHHHHHHhhCCCCce
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDD-----T-HTSHGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~-----~-~l~~G~~~~~~~~~l~~~~~~~~~ 485 (581)
++++.+.+.|+|.+++=+.-. .....+.++++++ .-.+++|+.++.. + ...+..++.+.++.+. ..++.
T Consensus 87 ed~~~~~~~Ga~~vilg~~~l-~~~~~l~ei~~~~-~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~---~~g~~ 161 (233)
T PRK00748 87 ETVEALLDAGVSRVIIGTAAV-KNPELVKEACKKF-PGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFE---DAGVK 161 (233)
T ss_pred HHHHHHHHcCCCEEEECchHH-hCHHHHHHHHHHh-CCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHH---hcCCC
Confidence 667777778999987765332 1222344445554 3346778877531 1 1112345566666663 22333
Q ss_pred EEEECCCCCc----c-chHHHHHHHhhCCCCeEEE
Q psy15811 486 AIGVNCVRPS----H-VSTLVRCIKQSHPTVQTIV 515 (581)
Q Consensus 486 ~iGiNC~~p~----~-~~~~l~~l~~~~~~~pl~~ 515 (581)
.|-++....+ . =..+++++++.. ++|+++
T Consensus 162 ~ii~~~~~~~g~~~G~d~~~i~~l~~~~-~ipvia 195 (233)
T PRK00748 162 AIIYTDISRDGTLSGPNVEATRELAAAV-PIPVIA 195 (233)
T ss_pred EEEEeeecCcCCcCCCCHHHHHHHHHhC-CCCEEE
Confidence 3333322111 1 145667776654 467554
No 341
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=55.97 E-value=84 Score=30.81 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCCCEEEeccc----CCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceE
Q psy15811 411 RPNVEALVRAGVDYLALETI----PAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQA 486 (581)
Q Consensus 411 ~~~~~~l~~~gvD~i~~ET~----p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~ 486 (581)
.++++.+.++|+|+|++-.- |...+....++.+++..++|+++.+ .+.+++.... ..+++.
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v-----------~t~~ea~~a~----~~G~d~ 146 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADI-----------STLEEALNAA----KLGFDI 146 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEEC-----------CCHHHHHHHH----HcCCCE
Confidence 36888999999998877321 3223566677777764347777643 2455554433 346777
Q ss_pred EEECCCC--------CccchHHHHHHHhhCCCCeEEE
Q psy15811 487 IGVNCVR--------PSHVSTLVRCIKQSHPTVQTIV 515 (581)
Q Consensus 487 iGiNC~~--------p~~~~~~l~~l~~~~~~~pl~~ 515 (581)
|++|-.+ .......++++++.. ++|+++
T Consensus 147 i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia 182 (219)
T cd04729 147 IGTTLSGYTEETAKTEDPDFELLKELRKAL-GIPVIA 182 (219)
T ss_pred EEccCccccccccCCCCCCHHHHHHHHHhc-CCCEEE
Confidence 7775211 112346777777665 577654
No 342
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=55.89 E-value=2.9e+02 Score=29.78 Aligned_cols=74 Identities=11% Similarity=0.165 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHHH----HCC--CcEEEEEccCC-------HHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCC
Q psy15811 145 MTEADLIAWHRPNVEALV----RAG--VDYLALETIPA-------EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGE 211 (581)
Q Consensus 145 ~~~~~~~~~~~~q~~~l~----~~g--vD~l~~ET~~~-------~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~ 211 (581)
.+.++..+.+.+-+..+. +.| |. |.+|.+|. +..+..++..+++. +.|=.+.++++-......|.
T Consensus 147 ~d~~~a~~~~~e~L~~lae~A~~~G~GV~-laLEp~p~~~~~~~ll~T~~~al~li~~v-~~pn~vgl~lDvgH~~~~g~ 224 (382)
T TIGR02631 147 KDVRAALDRMREALNLLAAYAEDQGYGLR-FALEPKPNEPRGDILLPTVGHALAFIETL-ERPELFGLNPETGHEQMAGL 224 (382)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhCCCcE-EEEccCCCCCCcceecCCHHHHHHHHHHc-CCccceeEEEechhHhhcCC
Confidence 445666666666665554 334 54 66787643 22333444444443 44444555666544456778
Q ss_pred CHHHHHHHH
Q psy15811 212 LISSAVTSC 220 (581)
Q Consensus 212 ~~~~~~~~~ 220 (581)
++.+++...
T Consensus 225 n~~~~i~~~ 233 (382)
T TIGR02631 225 NFTHGIAQA 233 (382)
T ss_pred CHHHHHHHH
Confidence 888777654
No 343
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=55.86 E-value=1e+02 Score=30.25 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=47.3
Q ss_pred HHHHHHHCCCcEEEEEc--cCCHHHHHHHHHHHHhcCCCcEEEEEEEcC-----CC-cCCCCCCHHHHHHHHHhhCCCCc
Q psy15811 157 NVEALVRAGVDYLALET--IPAEKEALALVKLLREFPGQKAWLSFSCKD-----DT-HTSHGELISSAVTSCLLANPDQI 228 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET--~~~~~E~~aa~~a~~~~~~~pv~isft~~~-----~g-~l~~G~~~~~~~~~~~~~~~~~~ 228 (581)
+++.+.+.|+|.+++=| +.+.+.++. .++++++ .+++|+.+.. .| ...+..++.+.+..+. ..++
T Consensus 88 d~~~~~~~Ga~~vilg~~~l~~~~~l~e---i~~~~~~-~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~---~~g~ 160 (233)
T PRK00748 88 TVEALLDAGVSRVIIGTAAVKNPELVKE---ACKKFPG-KIVVGLDARDGKVATDGWLETSGVTAEDLAKRFE---DAGV 160 (233)
T ss_pred HHHHHHHcCCCEEEECchHHhCHHHHHH---HHHHhCC-CceeeeeccCCEEEEccCeecCCCCHHHHHHHHH---hcCC
Confidence 35556678999987654 334433333 3334322 3666766542 11 1122345666666664 3555
Q ss_pred eEEEeCCC-------ChhhHHHHHHHHHhhCCCCceEE
Q psy15811 229 QAIGVNCV-------RPSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 229 ~~vGvNC~-------~p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
+.+-++.. +++ .++++++.+. .+.|++.
T Consensus 161 ~~ii~~~~~~~g~~~G~d--~~~i~~l~~~-~~ipvia 195 (233)
T PRK00748 161 KAIIYTDISRDGTLSGPN--VEATRELAAA-VPIPVIA 195 (233)
T ss_pred CEEEEeeecCcCCcCCCC--HHHHHHHHHh-CCCCEEE
Confidence 54444421 222 3666777664 4455544
No 344
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=55.81 E-value=93 Score=31.79 Aligned_cols=125 Identities=10% Similarity=0.048 Sum_probs=77.2
Q ss_pred HHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEE
Q psy15811 410 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 489 (581)
Q Consensus 410 ~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGi 489 (581)
..+.++.|.++|||+|= -++|+ ..-+.||-.++++-... + -
T Consensus 31 ~~~~~~~l~~~Gad~iE--------------------lGiPf--------SDP~aDGpvIq~a~~rA--L---------~ 71 (263)
T CHL00200 31 TKKALKILDKKGADIIE--------------------LGIPY--------SDPLADGPIIQEASNRA--L---------K 71 (263)
T ss_pred HHHHHHHHHHCCCCEEE--------------------ECCCC--------CCCCccCHHHHHHHHHH--H---------H
Confidence 44566777777888771 35552 23457898888886665 2 2
Q ss_pred CCCCCccchHHHHHHHhhCCCCe--EEEeeCCCCCcccc----------ccc-ccCCcCHHHHHHHHHHHHHcCCcEEee
Q psy15811 490 NCVRPSHVSTLVRCIKQSHPTVQ--TIVYPNKGGVWDSV----------HMK-WLDTEDEYSILHYVPQWLEEGVNIIGG 556 (581)
Q Consensus 490 NC~~p~~~~~~l~~l~~~~~~~p--l~~ypNag~~~~~~----------~~~-~~~~~~~~~~~~~~~~w~~~G~~iiGG 556 (581)
|++....+...+++++... +.| ++.|-|-=..|-.. -.+ -.+...+++..++...+.+.|...|=-
T Consensus 72 ~g~~~~~~~~~~~~~r~~~-~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 72 QGINLNKILSILSEVNGEI-KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILL 150 (263)
T ss_pred cCCCHHHHHHHHHHHhcCC-CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3444566778888887542 456 66677741111000 011 122334566677777888899888888
Q ss_pred cCCCch-HHHHHHHHHHhc
Q psy15811 557 CCEVTS-YEIQQMRIMIDE 574 (581)
Q Consensus 557 CCGt~P-~hI~al~~~l~~ 574 (581)
+.-||| +.|+.|.+..++
T Consensus 151 v~PtT~~eri~~i~~~a~g 169 (263)
T CHL00200 151 IAPTSSKSRIQKIARAAPG 169 (263)
T ss_pred ECCCCCHHHHHHHHHhCCC
Confidence 887775 688888876653
No 345
>PRK00865 glutamate racemase; Provisional
Probab=55.80 E-value=39 Score=34.32 Aligned_cols=50 Identities=22% Similarity=0.147 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEE
Q psy15811 144 SMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAW 196 (581)
Q Consensus 144 ~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~ 196 (581)
.-|.+++.++-.+.++.|.+.|+|++++=..+.-. .+++.+|+..++||+
T Consensus 46 ~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~---~~l~~lr~~~~iPvi 95 (261)
T PRK00865 46 EKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASA---VALPDLRERYDIPVV 95 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHH---HHHHHHHHhCCCCEE
Confidence 37899999999999999999999999987764321 245566654478877
No 346
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=55.78 E-value=1.5e+02 Score=29.74 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEE-----------ccCC-----------HHHHHHHHHHHHhcCCCcEEEEEEE-cCCCcCC
Q psy15811 152 AWHRPNVEALVRAGVDYLALE-----------TIPA-----------EKEALALVKLLREFPGQKAWLSFSC-KDDTHTS 208 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~E-----------T~~~-----------~~E~~aa~~a~~~~~~~pv~isft~-~~~g~l~ 208 (581)
+...+.++.|.++|||+|=+- +++. +......++.+|+..+.|+.+ |+. ++ ...
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~l-m~y~n~--~~~ 90 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVL-MGYYNP--ILQ 90 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEE-EEecCH--HHH
Confidence 445667888999999999666 1221 113344555555444688653 333 21 111
Q ss_pred CCCCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhh
Q psy15811 209 HGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQS 251 (581)
Q Consensus 209 ~G~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~ 251 (581)
.| ++..+..+. ..|++++-+.=-++++..++++.++++
T Consensus 91 ~G--~~~fi~~~~---~aG~~giiipDl~~ee~~~~~~~~~~~ 128 (242)
T cd04724 91 YG--LERFLRDAK---EAGVDGLIIPDLPPEEAEEFREAAKEY 128 (242)
T ss_pred hC--HHHHHHHHH---HCCCcEEEECCCCHHHHHHHHHHHHHc
Confidence 11 355666665 367777766555678888888888875
No 347
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=55.48 E-value=2.7e+02 Score=29.13 Aligned_cols=144 Identities=10% Similarity=-0.015 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEecc-----cCCH---HH----HHHHHHHHHh-cCCCeEEEEEEEcCC--CcCCCCC
Q psy15811 403 EADLIAWHRPNVEALVRAGVDYLALET-----IPAE---KE----ALALVKLLRE-FPGQKAWLSFSCKDD--THTSHGE 467 (581)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~gvD~i~~ET-----~p~~---~E----a~a~~~~~~~-~~~~pv~iSft~~~~--~~l~~G~ 467 (581)
.+++.+.|++.++.|.++|++.|-+.- ..+. .+ ++.+.+++.. -.+.++.+|+|..+. .+..+|
T Consensus 150 ~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~- 228 (332)
T cd03311 150 AMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEG- 228 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccC-
Confidence 378889999999999999999875543 2211 12 2234444443 235678888876432 223333
Q ss_pred cHHHHHHHHHhhCCCCceEEEECCCCC-ccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHH
Q psy15811 468 LISSAVTSCLLANPDQIQAIGVNCVRP-SHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQW 546 (581)
Q Consensus 468 ~~~~~~~~l~~~~~~~~~~iGiNC~~p-~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w 546 (581)
+...++..+ ....++++++-...+ ..-...|+.+.. +..+-+++.+.. ..| .++++...+.+++.
T Consensus 229 ~y~~i~~~l---~~~~vd~~~le~~~~~~~~~~~l~~~~~-~k~l~~GvVd~~--------~~~--~e~~e~v~~ri~~~ 294 (332)
T cd03311 229 GYEPIAEYI---FELDVDVFFLEYDNSRAGGLEPLKELPY-DKKVGLGVVDVK--------SPE--VESPEEVKDRIEEA 294 (332)
T ss_pred cHHHHHHHH---HhCCCCEEEEEEcCCCCcchHHHHhCCC-CCEEEeeeecCC--------CCC--CCCHHHHHHHHHHH
Confidence 456666766 233588888888543 223333344322 111223333321 112 34578888888888
Q ss_pred HHcCCc---EEeecCCCc
Q psy15811 547 LEEGVN---IIGGCCEVT 561 (581)
Q Consensus 547 ~~~G~~---iiGGCCGt~ 561 (581)
.+.... +++=-||..
T Consensus 295 ~~~~~~~~l~lsp~CGl~ 312 (332)
T cd03311 295 AKYVPLEQLWVSPDCGFA 312 (332)
T ss_pred HhhCCHHHEEECCCCCCC
Confidence 775432 677778865
No 348
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=55.38 E-value=2.2e+02 Score=28.07 Aligned_cols=143 Identities=23% Similarity=0.263 Sum_probs=82.7
Q ss_pred CCChHHHHHHHHHHHHhcccccccccccccc-ccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCC
Q psy15811 38 TTEPEACVETHRDFIRAGADIIQSSCYQANV-DNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTG 116 (581)
Q Consensus 38 l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~-~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~ 116 (581)
.-.++.++...+...++|.++|... +..|. .....++.+.++..+..+.+++.||+.-.
T Consensus 63 ~~~~~~i~~~~~~~~~~g~~~i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~------------------- 122 (237)
T PF00682_consen 63 RANEEDIERAVEAAKEAGIDIIRIF-ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGY------------------- 122 (237)
T ss_dssp ESCHHHHHHHHHHHHHTTSSEEEEE-EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS-------------------
T ss_pred eehHHHHHHHHHhhHhccCCEEEec-CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-------------------
Confidence 4456677776777788999987765 33344 22233666555555555555555544311
Q ss_pred CeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEE-ccC--CHHHHHHHHHHHHhc-CC
Q psy15811 117 HIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE-TIP--AEKEALALVKLLREF-PG 192 (581)
Q Consensus 117 ~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E-T~~--~~~E~~aa~~a~~~~-~~ 192 (581)
. | ++++.-.+ ..+.++ +.+.++.+.+.|+|.|.+- |+. ...++...++.+++. ++
T Consensus 123 ~--v--~~~~~~~~-------------~~~~~~----~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 123 E--V--AFGCEDAS-------------RTDPEE----LLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD 181 (237)
T ss_dssp E--E--EEEETTTG-------------GSSHHH----HHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT
T ss_pred c--e--EeCccccc-------------cccHHH----HHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC
Confidence 2 2 23322211 134444 4455666777799988665 765 677888888888853 33
Q ss_pred CcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE
Q psy15811 193 QKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 193 ~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
+-+.|-+-++ .|..+..++.++. .|++.|
T Consensus 182 --~~l~~H~Hnd----~Gla~An~laA~~----aGa~~i 210 (237)
T PF00682_consen 182 --IPLGFHAHND----LGLAVANALAALE----AGADRI 210 (237)
T ss_dssp --SEEEEEEBBT----TS-HHHHHHHHHH----TT-SEE
T ss_pred --CeEEEEecCC----ccchhHHHHHHHH----cCCCEE
Confidence 5566666544 4777777777664 566654
No 349
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=55.33 E-value=3.4e+02 Score=30.30 Aligned_cols=149 Identities=9% Similarity=-0.012 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE----Eecc---cCCHHHHHHHHHHHHh---cCCCeEEEEEEEcCCCcCCCCCcHH
Q psy15811 401 MTEADLIAWHRPNVEALVRAGVDYL----ALET---IPAEKEALALVKLLRE---FPGQKAWLSFSCKDDTHTSHGELIS 470 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~gvD~i----~~ET---~p~~~Ea~a~~~~~~~---~~~~pv~iSft~~~~~~l~~G~~~~ 470 (581)
++++++.+.-+ .+...|+|+| .+-. .|-.+-++++.+++++ .++...+-.|.+ ++.+..
T Consensus 180 Lsp~~~A~~~y----~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-------Ta~~~~ 248 (475)
T CHL00040 180 LSAKNYGRAVY----ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNA-------TAGTCE 248 (475)
T ss_pred CCHHHHHHHHH----HHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeecc-------CCCCHH
Confidence 66666665444 4456899998 2222 2224555666666663 477766656633 233344
Q ss_pred HHHHHHHhhCCCCceEEEECC--CCCccchHHHHHHHhhCCCCeEEEeeCCCCCccccc-ccccCCcCHHHHHHHHHHHH
Q psy15811 471 SAVTSCLLANPDQIQAIGVNC--VRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVH-MKWLDTEDEYSILHYVPQWL 547 (581)
Q Consensus 471 ~~~~~l~~~~~~~~~~iGiNC--~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~-~~~~~~~~~~~~~~~~~~w~ 547 (581)
+..+..+.....+..++.+|- .+.. ....|....... +.||...|+.-..+.... .++ + .+. +.+=|+
T Consensus 249 em~~ra~~a~e~G~~~~mv~~~~~G~~-al~~l~~~~~~~-~l~IhaHrA~~ga~~r~~~~Gi----s--~~v-l~KL~R 319 (475)
T CHL00040 249 EMYKRAVFARELGVPIVMHDYLTGGFT-ANTSLAHYCRDN-GLLLHIHRAMHAVIDRQKNHGI----H--FRV-LAKALR 319 (475)
T ss_pred HHHHHHHHHHHcCCceEEEeccccccc-hHHHHHHHhhhc-CceEEeccccccccccCccCCC----c--HHH-HHHHHH
Confidence 444444322334555666666 2333 233333332233 699999999765554331 122 1 122 555566
Q ss_pred HcCCcEE-----eecCCCchHHHHHHH
Q psy15811 548 EEGVNII-----GGCCEVTSYEIQQMR 569 (581)
Q Consensus 548 ~~G~~ii-----GGCCGt~P~hI~al~ 569 (581)
-.|+..+ .|=-..+......++
T Consensus 320 LaGaD~ih~~t~~gk~~g~~~~~~~~~ 346 (475)
T CHL00040 320 MSGGDHIHAGTVVGKLEGEREMTLGFV 346 (475)
T ss_pred HcCCCccccCCcccCCCCCHHHHHHHH
Confidence 7788776 444444455444443
No 350
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=55.20 E-value=37 Score=35.88 Aligned_cols=95 Identities=19% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHCCC-cEEEEEccCCHHHHHH-HHHHHHhc-CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCce
Q psy15811 153 WHRPNVEALVRAGV-DYLALETIPAEKEALA-LVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ 229 (581)
Q Consensus 153 ~~~~q~~~l~~~gv-D~l~~ET~~~~~E~~a-a~~a~~~~-~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~ 229 (581)
.||..++.+ |+ |+++-|-+..-.=+.. ..+.++.. .+.|+++|+. |.++++.++++......+.+
T Consensus 25 ~fR~~~~~~---g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~---------g~~p~~~~~aA~~~~~~g~d 92 (333)
T PRK11815 25 HCRYFHRLL---SRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG---------GSDPADLAEAAKLAEDWGYD 92 (333)
T ss_pred HHHHHHHHh---CCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe---------CCCHHHHHHHHHHHHhcCCC
Confidence 355554433 65 8877776543211110 11222211 3689999884 33444444333222346899
Q ss_pred EEEeCCCChhh-----------------HHHHHHHHHhhCCCCceEEe
Q psy15811 230 AIGVNCVRPSH-----------------VSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 230 ~vGvNC~~p~~-----------------~~~~l~~l~~~~~~~p~~~~ 260 (581)
+|-|||++|.. +.++++.+++. .+.|++++
T Consensus 93 ~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~-v~~pVsvK 139 (333)
T PRK11815 93 EINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA-VSIPVTVK 139 (333)
T ss_pred EEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHH-cCCceEEE
Confidence 99999987632 22555666553 45677765
No 351
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=54.92 E-value=1.1e+02 Score=30.70 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHCCC--cEEEEEc-----cCCHHHHHHHHHHHHhcCCCcEEEE-EEEcC
Q psy15811 151 IAWHRPNVEALVRAGV--DYLALET-----IPAEKEALALVKLLREFPGQKAWLS-FSCKD 203 (581)
Q Consensus 151 ~~~~~~q~~~l~~~gv--D~l~~ET-----~~~~~E~~aa~~a~~~~~~~pv~is-ft~~~ 203 (581)
...|.+.++.|.+.|+ |.|-++- .+++.+++..++.+.+. ++||+|| |.+..
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~-g~pi~iTE~dv~~ 194 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASL-GLEIQITELDISG 194 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHc-CCceEEEEeecCC
Confidence 4588889999998775 6676653 26788999999998876 9999998 76653
No 352
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=54.90 E-value=18 Score=38.57 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCCcEEE---EEccC------------CHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHH
Q psy15811 154 HRPNVEALVRAGVDYLA---LETIP------------AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVT 218 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~---~ET~~------------~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~ 218 (581)
.+++++.|.++|+|.+. +||+. +.++...+++.+++. ++++...|-+- .|++.++.+.
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~-Gi~~~sg~i~G------lgEt~edrv~ 221 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHEL-GLKTNATMLYG------HIETPAHRVD 221 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHc-CCCcceEEEee------CCCCHHHHHH
Confidence 35678889999999774 78863 244555677777776 77776665553 4777777766
Q ss_pred HHH
Q psy15811 219 SCL 221 (581)
Q Consensus 219 ~~~ 221 (581)
.+.
T Consensus 222 ~l~ 224 (351)
T TIGR03700 222 HML 224 (351)
T ss_pred HHH
Confidence 554
No 353
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=54.80 E-value=1.8e+02 Score=30.71 Aligned_cols=153 Identities=11% Similarity=0.081 Sum_probs=83.7
Q ss_pred CCCCHH---HHHHHHHHHHHHHHHCCCcEEEEEc--------cC-----------------CHHHHHHHHHHHHhcCCC-
Q psy15811 143 DSMTEA---DLIAWHRPNVEALVRAGVDYLALET--------IP-----------------AEKEALALVKLLREFPGQ- 193 (581)
Q Consensus 143 ~~~~~~---~~~~~~~~q~~~l~~~gvD~l~~ET--------~~-----------------~~~E~~aa~~a~~~~~~~- 193 (581)
+.+|.+ ++.+.|.+-++...++|.|.|-+=. |- ...=++.+++++|+..+.
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d 219 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD 219 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC
Confidence 456654 5677888888888889999984421 11 112234456666653222
Q ss_pred cEEEEEEEcCCC-cCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC-----hhhHHHHHHHHHhhCCCCceEEecCCCccc
Q psy15811 194 KAWLSFSCKDDT-HTSHGELISSAVTSCLLANPDQIQAIGVNCVR-----PSHVSTLVRCIKQSHPTVQTIVYPNKGVKL 267 (581)
Q Consensus 194 pv~isft~~~~g-~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~-----p~~~~~~l~~l~~~~~~~p~~~~pnag~~~ 267 (581)
|+.+-++..+.. ....|.++++.+..+..+...+++.|-|.+.. +....+..+.+++. .++|+++. .++.
T Consensus 220 ~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~-~~ipvi~~--G~i~- 295 (338)
T cd02933 220 RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKA-FKGPLIAA--GGYD- 295 (338)
T ss_pred ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHH-cCCCEEEE--CCCC-
Confidence 676666554311 11235677766554433335678888876642 12345667777775 66776663 2221
Q ss_pred cCCCchhhhccccCcccCCCCcccccccCCChHHHHHH
Q psy15811 268 LDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVET 305 (581)
Q Consensus 268 ~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~v 305 (581)
-..+.++.+..+.++.+ -.+.++.+|+.+.++
T Consensus 296 --~~~a~~~l~~g~~D~V~----~gR~~ladP~~~~k~ 327 (338)
T cd02933 296 --AESAEAALADGKADLVA----FGRPFIANPDLVERL 327 (338)
T ss_pred --HHHHHHHHHcCCCCEEE----eCHhhhhCcCHHHHH
Confidence 12233343331233321 244567788888776
No 354
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=54.64 E-value=2.5e+02 Score=29.07 Aligned_cols=114 Identities=11% Similarity=0.157 Sum_probs=64.5
Q ss_pred CeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEE---------ccCCHHHH---HHHH
Q psy15811 117 HIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE---------TIPAEKEA---LALV 184 (581)
Q Consensus 117 ~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~E---------T~~~~~E~---~aa~ 184 (581)
+..|.|-|==+.+++++|+.| .+.+++ .++++.+++.|+|+|=+= -++.-+|. ..++
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~-------~~~~~a----~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI 82 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTH-------NSLIDA----VKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVV 82 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCC-------CCHHHH----HHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456888887778888776332 345554 456777889999997333 23334564 4455
Q ss_pred HHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEE----EeCCCChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 185 KLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAI----GVNCVRPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 185 ~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~v----GvNC~~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
+.+++..++| + ++++ ... ++++.+.+ .|++.| |++ .| .|.+.+ .+ .+.|++++
T Consensus 83 ~~l~~~~~~~--I--SIDT-------~~~-~va~~AL~---~GadiINDI~g~~--d~-~~~~~~---a~--~~~~vVlm 139 (282)
T PRK11613 83 EAIAQRFEVW--I--SVDT-------SKP-EVIRESAK---AGAHIINDIRSLS--EP-GALEAA---AE--TGLPVCLM 139 (282)
T ss_pred HHHHhcCCCe--E--EEEC-------CCH-HHHHHHHH---cCCCEEEECCCCC--CH-HHHHHH---HH--cCCCEEEE
Confidence 6665322444 4 4442 112 33444443 466765 332 34 344443 33 46789999
Q ss_pred cCCC
Q psy15811 261 PNKG 264 (581)
Q Consensus 261 pnag 264 (581)
++.|
T Consensus 140 h~~g 143 (282)
T PRK11613 140 HMQG 143 (282)
T ss_pred cCCC
Confidence 8876
No 355
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=54.62 E-value=1.5e+02 Score=29.59 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=56.7
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcC---CCCCCHHHHHHHHHhhCCCCceEEE
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHT---SHGELISSAVTSCLLANPDQIQAIG 232 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l---~~G~~~~~~~~~~~~~~~~~~~~vG 232 (581)
++++.+++.|+|-+++=|..-. . ..+-++++++++-.+++|+-+.. |.. .++.++.+.++.+.+. .......-
T Consensus 91 edv~~~l~~Ga~~viigt~~~~-~-~~~~~~~~~~~~~~iivslD~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~li~~d 166 (233)
T cd04723 91 ENAQEWLKRGASRVIVGTETLP-S-DDDEDRLAALGEQRLVLSLDFRG-GQLLKPTDFIGPEELLRRLAKW-PEELIVLD 166 (233)
T ss_pred HHHHHHHHcCCCeEEEcceecc-c-hHHHHHHHhcCCCCeEEEEeccC-CeeccccCcCCHHHHHHHHHHh-CCeEEEEE
Confidence 4667788899998877654422 2 44555666664446888887753 333 4677888888887653 22233333
Q ss_pred eCCCC----hhhHHHHHHHHHhhCCCCceEE
Q psy15811 233 VNCVR----PSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 233 vNC~~----p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
++..+ |+ .++++.+.+. .+.|+.+
T Consensus 167 i~~~G~~~g~~--~~~~~~i~~~-~~ipvi~ 194 (233)
T cd04723 167 IDRVGSGQGPD--LELLERLAAR-ADIPVIA 194 (233)
T ss_pred cCccccCCCcC--HHHHHHHHHh-cCCCEEE
Confidence 33322 22 2556666654 4455544
No 356
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=54.56 E-value=47 Score=31.53 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=61.9
Q ss_pred CeEEEeecCCcCCCCCCCCCCCCCCCCC--------CC----------HH-HHHHHHHHHHHHHHHCCCcEEEEEccCCH
Q psy15811 117 HIETAASIGPYGTVLRDGSEYSGHYVDS--------MT----------EA-DLIAWHRPNVEALVRAGVDYLALETIPAE 177 (581)
Q Consensus 117 ~~~VagsiGP~g~~~~~~~ey~~~y~~~--------~~----------~~-~~~~~~~~q~~~l~~~gvD~l~~ET~~~~ 177 (581)
+++++|-=|...+..+=.+|.+|.|..+ +| .| --...|.+|++++-..|==++.+=|-.+-
T Consensus 43 Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS 122 (176)
T COG0279 43 KVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNS 122 (176)
T ss_pred EEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence 7888888777776544445555555432 11 01 12345899999998888667788899999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEEcCCCcC
Q psy15811 178 KEALALVKLLREFPGQKAWLSFSCKDDTHT 207 (581)
Q Consensus 178 ~E~~aa~~a~~~~~~~pv~isft~~~~g~l 207 (581)
..+..|++.+++. +..+ |.||-.++|.+
T Consensus 123 ~nVl~Ai~~Ak~~-gm~v-I~ltG~~GG~~ 150 (176)
T COG0279 123 KNVLKAIEAAKEK-GMTV-IALTGKDGGKL 150 (176)
T ss_pred HHHHHHHHHHHHc-CCEE-EEEecCCCccc
Confidence 9999999999975 6644 46777776655
No 357
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=54.50 E-value=2.2e+02 Score=29.74 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=44.1
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCC--CCHHHHHHHHHh--hCCCCceEEE
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHG--ELISSAVTSCLL--ANPDQIQAIG 232 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G--~~~~~~~~~~~~--~~~~~~~~vG 232 (581)
.++.+.+.|+|++-++...++.|++. .+. .+. .+.--+++.+.+. | +.+.+.++.+.+ ....+-..++
T Consensus 248 ~~~~l~~~g~d~~~~~~~~~~~~~~~---~~~--~~~--~l~Gni~~~~~l~-gt~eei~~~v~~~i~~~~~~~~gfIl~ 319 (343)
T PF01208_consen 248 ILDDLADLGADVLSVDEKVDLAEAKR---KLG--DKI--VLMGNIDPVSLLF-GTPEEIEEEVKRLIEEGLAGGGGFILS 319 (343)
T ss_dssp GHHHHHTSS-SEEEE-TTS-HHHHHH---HHT--TSS--EEEEEB-G-GGGG-S-HHHHHHHHHHHHHHTHCTSSSEEBE
T ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHH---HhC--CCe--EEECCCCcccccc-CCHHHHHHHHHHHHHHhcCCCCCEEEe
Confidence 46678889999999988777755443 221 123 3333344333343 4 334455555544 2334557889
Q ss_pred eCCC-----ChhhHHHHHHHHH
Q psy15811 233 VNCV-----RPSHVSTLVRCIK 249 (581)
Q Consensus 233 vNC~-----~p~~~~~~l~~l~ 249 (581)
..|. .++.+..+++..+
T Consensus 320 ~gc~ip~~~p~eni~a~~~a~~ 341 (343)
T PF01208_consen 320 PGCGIPPDTPPENIKAMVEAVK 341 (343)
T ss_dssp BSS---TTS-HHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHH
Confidence 9995 2455555555544
No 358
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=54.43 E-value=26 Score=35.16 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEEEccCCH
Q psy15811 146 TEADLIAWHRPNVEALVRAGVDYLALETIPAE 177 (581)
Q Consensus 146 ~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~ 177 (581)
+.+++.+.-.+-+..|.++|+|.+++|.+.|.
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD~ 59 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGDA 59 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeccCCC
Confidence 78999999999999999999999999998764
No 359
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=54.12 E-value=2.2e+02 Score=32.70 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=63.4
Q ss_pred HHHHHhCCCCEEE-ecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-
Q psy15811 414 VEALVRAGVDYLA-LETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC- 491 (581)
Q Consensus 414 ~~~l~~~gvD~i~-~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC- 491 (581)
++...++|+|.|- |-.+++...++.+++.+++ .+..+-..+++-.... .+++..++.+.++...+++.|.|--
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~-~G~~v~~~i~~t~~p~----~t~~~~~~~a~~l~~~Gad~I~i~Dt 176 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKK-AGAHVQGTISYTTSPV----HTIEKYVELAKELEEMGCDSICIKDM 176 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHH-cCCEEEEEEEeccCCC----CCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 3334568999874 4456678888888898887 4766654554322111 2344444433333455677776655
Q ss_pred ---CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 492 ---VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 492 ---~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
..|..+..+++.++... ++|+.+...
T Consensus 177 ~G~~~P~~~~~lv~~lk~~~-~~pi~~H~H 205 (592)
T PRK09282 177 AGLLTPYAAYELVKALKEEV-DLPVQLHSH 205 (592)
T ss_pred CCCcCHHHHHHHHHHHHHhC-CCeEEEEEc
Confidence 36888999999998876 588877764
No 360
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=53.73 E-value=2.5e+02 Score=29.77 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeccc----------C--C----------HHHHH---HHHHHHHhcCCCeEEEEEEE
Q psy15811 403 EADLIAWHRPNVEALVRAGVDYLALETI----------P--A----------EKEAL---ALVKLLREFPGQKAWLSFSC 457 (581)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~gvD~i~~ET~----------p--~----------~~Ea~---a~~~~~~~~~~~pv~iSft~ 457 (581)
.+++.+.|...++.+.++|.|.|=+=.- | + ...++ .+++++|+..+.|+.+-++.
T Consensus 137 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~ 216 (337)
T PRK13523 137 IKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISA 216 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 3567788889999999999999855322 2 1 12333 45555555345677776654
Q ss_pred cCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCC---------CccchHHHHHHHhhCCCCeEEEe
Q psy15811 458 KDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR---------PSHVSTLVRCIKQSHPTVQTIVY 516 (581)
Q Consensus 458 ~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~---------p~~~~~~l~~l~~~~~~~pl~~y 516 (581)
.+ ....|.++++.+..+..+...+++.|-|-... +.....+.++++... ++|+++-
T Consensus 217 ~d--~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~-~ipVi~~ 281 (337)
T PRK13523 217 SD--YHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA-NIATGAV 281 (337)
T ss_pred cc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc-CCcEEEe
Confidence 33 34457788877766544445567876665521 111235667777765 5787663
No 361
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.43 E-value=1.5e+02 Score=29.24 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=54.9
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCC------CCCcHHHHHHHHHhhCCCCce
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTS------HGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~------~G~~~~~~~~~l~~~~~~~~~ 485 (581)
+.++.+.+.|+|.+.+-|.- +.+...+.++.+.+..-.+++|+.+++..... .+.++.+.++.+.......+.
T Consensus 89 ~~~~~~~~~Ga~~v~iGs~~-~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~ 167 (241)
T PRK13585 89 EDAASLLDLGVDRVILGTAA-VENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSIL 167 (241)
T ss_pred HHHHHHHHcCCCEEEEChHH-hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEE
Confidence 56677778999998887644 22233444455554445678888876432221 233666777766333222333
Q ss_pred EEEECCCC--CccchHHHHHHHhhCCCCeEEEe
Q psy15811 486 AIGVNCVR--PSHVSTLVRCIKQSHPTVQTIVY 516 (581)
Q Consensus 486 ~iGiNC~~--p~~~~~~l~~l~~~~~~~pl~~y 516 (581)
..++...+ ...-..+++++.... ++|+++-
T Consensus 168 ~~~~~~~g~~~g~~~~~i~~i~~~~-~iPvia~ 199 (241)
T PRK13585 168 FTNVDVEGLLEGVNTEPVKELVDSV-DIPVIAS 199 (241)
T ss_pred EEeecCCCCcCCCCHHHHHHHHHhC-CCCEEEe
Confidence 33343211 111235577777665 5775543
No 362
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=53.23 E-value=3.1e+02 Score=29.30 Aligned_cols=144 Identities=16% Similarity=0.145 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCC-------HHH-----HHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHH
Q psy15811 407 IAWHRPNVEALVRAGVDYLALETIPA-------EKE-----ALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVT 474 (581)
Q Consensus 407 ~~~~~~~~~~l~~~gvD~i~~ET~p~-------~~E-----a~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~ 474 (581)
.+.--.-++.+.++|+|.|-+-+-.. ..+ ...+.+.+++...-+.+++|+- ..+. + +.
T Consensus 188 td~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~pii~f~~-ga~~------~---l~ 257 (352)
T COG0407 188 TDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVPVIHFCK-GAGH------L---LE 257 (352)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCCCcEEEECC-CcHH------H---HH
Confidence 33444445566779999986554411 111 2334445554333256778853 2111 1 12
Q ss_pred HHHhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcE-
Q psy15811 475 SCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNI- 553 (581)
Q Consensus 475 ~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~i- 553 (581)
.+ ...+.+++|+-+.-+ ++..+....+. +.++-|--+... ..+++.+.+.+++.++.|...
T Consensus 258 ~m---~~~g~d~l~vdw~v~------l~~a~~~~~~~-~~lqGNldP~lL--------~~~~~~i~~~~~~iL~~~~~~~ 319 (352)
T COG0407 258 DM---AKTGFDVLGVDWRVD------LKEAKKRLGDK-VALQGNLDPALL--------YAPPEAIKEEVKRILEDGGDGS 319 (352)
T ss_pred HH---HhcCCcEEeeccccC------HHHHHHHhCCC-ceEEeccChHhh--------cCCHHHHHHHHHHHHHHhccCC
Confidence 33 233578888888222 33333322122 677777643111 123567888888888877654
Q ss_pred ---E-eec---CCCchHHHHHHHHHHhcccCC
Q psy15811 554 ---I-GGC---CEVTSYEIQQMRIMIDEFNTK 578 (581)
Q Consensus 554 ---i-GGC---CGt~P~hI~al~~~l~~~~~~ 578 (581)
+ =|| =+|.|++++++-+.++++.++
T Consensus 320 ~~IfnlGhGI~P~tp~e~v~~lve~v~~~~~~ 351 (352)
T COG0407 320 GYIFNLGHGILPETPPENVKALVEAVHEYSRE 351 (352)
T ss_pred CceecCCCCcCCCCCHHHHHHHHHHHHHhccC
Confidence 1 123 257789999999999877654
No 363
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=53.20 E-value=48 Score=36.22 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=17.6
Q ss_pred CCCCcHHHHHHHHHhhCCCCceEEEECCC
Q psy15811 464 SHGELISSAVTSCLLANPDQIQAIGVNCV 492 (581)
Q Consensus 464 ~~G~~~~~~~~~l~~~~~~~~~~iGiNC~ 492 (581)
..|++++.+++.+. ...++..|.++|-
T Consensus 99 iIGdDi~~v~~~~~--~~~~~~vi~v~t~ 125 (430)
T cd01981 99 ILQEDLQNFVRAAG--LSSKSPVLPLDVN 125 (430)
T ss_pred HHhhCHHHHHHHhh--hccCCCeEEecCC
Confidence 34788887777763 2235567788883
No 364
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=52.96 E-value=93 Score=31.89 Aligned_cols=79 Identities=11% Similarity=0.216 Sum_probs=57.6
Q ss_pred HHHHHHHCCCcEEEEE---ccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 157 NVEALVRAGVDYLALE---TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 157 q~~~l~~~gvD~l~~E---T~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
.++.+...|.|++++. .-.+..++...+.+++.. +.+.+| |.+++.. ..+.+++ +.|+++|-+
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~-g~~~lV--------Rvp~~~~--~~i~r~L---D~GA~GIiv 96 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPY-ASQPVI--------RPVEGSK--PLIKQVL---DIGAQTLLI 96 (267)
T ss_pred HHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhc-CCCeEE--------ECCCCCH--HHHHHHh---CCCCCeeEe
Confidence 3677888999999997 456888988888888754 566565 3333432 3445554 689999999
Q ss_pred CCC-ChhhHHHHHHHHH
Q psy15811 234 NCV-RPSHVSTLVRCIK 249 (581)
Q Consensus 234 NC~-~p~~~~~~l~~l~ 249 (581)
=.. .+++.+.+++..+
T Consensus 97 P~V~saeeA~~~V~a~r 113 (267)
T PRK10128 97 PMVDTAEQARQVVSATR 113 (267)
T ss_pred cCcCCHHHHHHHHHhcC
Confidence 887 7998888877654
No 365
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=52.92 E-value=2.3e+02 Score=28.56 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=56.5
Q ss_pred HHHHHHCCCcEEEEEc-cCCH--------------HHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHh
Q psy15811 158 VEALVRAGVDYLALET-IPAE--------------KEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 222 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET-~~~~--------------~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~ 222 (581)
++...+.|+|.+-+-. .++. +.++.+++.+|+. +.. ++|.+.+.++. +++..+..+..
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G~~--v~~~~~~~~~~----~~~~~~~~~~~ 147 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR-GLF--VSVGAEDASRA----DPDFLIEFAEV 147 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCe--EEEeeccCCCC----CHHHHHHHHHH
Confidence 4556688999875543 3222 3455666777765 654 45677655443 34443333322
Q ss_pred hCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 223 ANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 223 ~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
....|++.|.+-=+ .|+.+..+++.+++. .++||.+.
T Consensus 148 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~l~~H 188 (259)
T cd07939 148 AQEAGADRLRFADTVGILDPFTTYELIRRLRAA-TDLPLEFH 188 (259)
T ss_pred HHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCeEEEE
Confidence 22467777766543 499999999999875 33555443
No 366
>KOG2949|consensus
Probab=52.76 E-value=1.5e+02 Score=29.64 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcC------CCcCCCCCcHHHHHHH---HH
Q psy15811 407 IAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKD------DTHTSHGELISSAVTS---CL 477 (581)
Q Consensus 407 ~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~------~~~l~~G~~~~~~~~~---l~ 477 (581)
.+.-+..++.+..+|+|.+=+|-=+. -...+++.+-+ .++||+-++-..+ .|.-..|-++..+++. ..
T Consensus 116 sda~knAv~vmk~~g~~~vK~EgGs~--~~~~~~~~l~e-rgipV~gHvGLTPQ~v~~lGGyk~QGr~~~~a~~l~EtAm 192 (306)
T KOG2949|consen 116 SDAVKNAVRVMKEGGMDAVKLEGGSN--SRITAAKRLVE-RGIPVMGHVGLTPQAVSVLGGYKPQGRNIASAVKLVETAM 192 (306)
T ss_pred HHHHHHHHHHHHhcCCceEEEccCcH--HHHHHHHHHHH-cCCceeeeccCChhhhhhccCcCccchhHHHHHHHHHHHH
Confidence 34556788889889999999997663 22233333333 5999998885543 2444556666655543 22
Q ss_pred hhCCCCceEEEECCCCCccchHHHHHH
Q psy15811 478 LANPDQIQAIGVNCVRPSHVSTLVRCI 504 (581)
Q Consensus 478 ~~~~~~~~~iGiNC~~p~~~~~~l~~l 504 (581)
.++..+..-|-+.|+.|.....+-+.|
T Consensus 193 qLqk~Gc~svvlECvP~~~A~~iTs~l 219 (306)
T KOG2949|consen 193 QLQKAGCFSVVLECVPPPVAAAITSAL 219 (306)
T ss_pred HHHhcccceEeeecCChHHHHHHHhcc
Confidence 345678888899997776554443444
No 367
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=52.71 E-value=2.3e+02 Score=30.33 Aligned_cols=162 Identities=14% Similarity=0.214 Sum_probs=94.8
Q ss_pred ccCCChHHHHHHHHHHHHhccccccccccc--cccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccc
Q psy15811 36 YLTTEPEACVETHRDFIRAGADIIQSSCYQ--ANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNL 113 (581)
Q Consensus 36 ~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~--a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~ 113 (581)
..++.+|.+.++-+.--++|+.++.--.|. .|+.++. | +-+++.++.+++++++. -
T Consensus 109 CsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~--G--------~g~~gl~~L~~~~~e~G----------l-- 166 (352)
T PRK13396 109 CSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQ--G--------HGESALELLAAAREATG----------L-- 166 (352)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccC--C--------chHHHHHHHHHHHHHcC----------C--
Confidence 358999999999999999999998877775 2333332 2 23456777778877631 1
Q ss_pred cCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCC
Q psy15811 114 LTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQ 193 (581)
Q Consensus 114 ~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~ 193 (581)
+ ++. ...+ .++++.+.+. ||++-+=...-.+ ...++++.+. ++
T Consensus 167 ---~-~~t---------------------ev~d--------~~~v~~~~~~-~d~lqIga~~~~n--~~LL~~va~t-~k 209 (352)
T PRK13396 167 ---G-IIT---------------------EVMD--------AADLEKIAEV-ADVIQVGARNMQN--FSLLKKVGAQ-DK 209 (352)
T ss_pred ---c-EEE---------------------eeCC--------HHHHHHHHhh-CCeEEECcccccC--HHHHHHHHcc-CC
Confidence 1 111 0112 2355666665 8998766543222 2235555553 89
Q ss_pred cEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC-----C-C-hhhH--HHHHHHHHhhCCCCceEEecCCC
Q psy15811 194 KAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC-----V-R-PSHV--STLVRCIKQSHPTVQTIVYPNKG 264 (581)
Q Consensus 194 pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC-----~-~-p~~~--~~~l~~l~~~~~~~p~~~~pnag 264 (581)
||+++ .|...+-+.+..+++.+.. ......+..-| . + |... ...+..+++. ...|+++-|.-+
T Consensus 210 PVllk-----~G~~~t~ee~~~A~e~i~~--~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~-~~lPVi~DpsH~ 281 (352)
T PRK13396 210 PVLLK-----RGMAATIDEWLMAAEYILA--AGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSL-THLPIMIDPSHG 281 (352)
T ss_pred eEEEe-----CCCCCCHHHHHHHHHHHHH--cCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHh-hCCCEEECCccc
Confidence 99984 2322233445555555543 34457888888 2 1 3211 3455666654 567888777654
No 368
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=52.45 E-value=3.5e+02 Score=29.57 Aligned_cols=174 Identities=13% Similarity=0.053 Sum_probs=85.0
Q ss_pred ceEEEeCCC-ChhhHHHHHHHHHhhCCCCceEEecCCCccccCCCc-----------hhhhccccCcc---------cCC
Q psy15811 228 IQAIGVNCV-RPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSF-----------TSQVSRHTIKD---------VDG 286 (581)
Q Consensus 228 ~~~vGvNC~-~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~dG~~-----------gt~L~~~~g~~---------~~g 286 (581)
+.+|=-=|+ +|..+..+|+.-+. .+.|+++-..+.=.-.+||+ -..+....|.+ -.|
T Consensus 13 ~~Gi~SVCsahp~VieAAl~~a~~--~~~pvLiEAT~NQVdq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlG 90 (421)
T PRK15052 13 HIGICSVCSAHPLVIEAALAFDLN--STRKVLIEATSNQVNQFGGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLG 90 (421)
T ss_pred CCceeeECCCCHHHHHHHHHHHhh--cCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCC
Confidence 344444576 88888887777665 46777777776644456774 11222222332 112
Q ss_pred CCcccccccCCChHHHHHHHHHHHHH---HHhhcCCcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15811 287 HPLWSSVYLTTEPEACVETHRDFIRG---HIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVD 363 (581)
Q Consensus 287 ~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tna~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~ 363 (581)
..-|-...-.+.-+.-+++...|++| -|.-.+|-.-. . |. .. ++. +.+.+++++|++-|-..
T Consensus 91 Pn~Wq~~pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca---~-d~-------~~-L~d---~~vA~Raa~L~~~aE~~ 155 (421)
T PRK15052 91 PNCWQQEPADAAMEKSVELVKAYVRAGFSKIHLDASMSCA---D-DP-------IP-LAP---ETVAERAAVLCQAAESV 155 (421)
T ss_pred CccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCcc---C-CC-------cc-CCH---HHHHHHHHHHHHHHHHH
Confidence 22264321111112345677888888 11111111100 0 00 01 222 34667888888754332
Q ss_pred hhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q psy15811 364 YLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVD 423 (581)
Q Consensus 364 ~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD 423 (581)
... ......+||+|.==|.+..... + -.-...++.+....+....-++|.+.|.+
T Consensus 156 ~~~-~~~~~~vYvIGTEvP~pGGa~~--~--~~~~~vT~~e~~~~ti~~h~~af~~~GL~ 210 (421)
T PRK15052 156 ATD-CQREQLSYVIGTEVPVPGGEAS--A--IQSVHVTRVEDAANTLRTHQKAFIARGLT 210 (421)
T ss_pred HHh-cCCCCceEEeccccCCCCcchh--h--ccccCCCCHHHHHHHHHHHHHHHHHcCch
Confidence 211 1223468999885554321111 0 00112345677777776666778887753
No 369
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=52.21 E-value=2.6e+02 Score=32.00 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=62.9
Q ss_pred HHHHHhCCCCEEEe-cccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-
Q psy15811 414 VEALVRAGVDYLAL-ETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC- 491 (581)
Q Consensus 414 ~~~l~~~gvD~i~~-ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC- 491 (581)
++...++|+|.|-+ -.+++...++..++.+++ .++.+..++++..... -+-+.+.+.++.+ ...+++.|.+--
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~-~G~~v~~~i~~t~~p~-~~~~~~~~~~~~~---~~~Gad~I~i~Dt 171 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKK-HGAHAQGTISYTTSPV-HTLETYLDLAEEL---LEMGVDSICIKDM 171 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHH-cCCEEEEEEEeccCCC-CCHHHHHHHHHHH---HHcCCCEEEECCC
Confidence 33455689998744 455667888888899887 4776666554322111 1112334444444 445677666654
Q ss_pred ---CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 492 ---VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 492 ---~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
..|..+..+++.++... ++|+.+.-.
T Consensus 172 ~G~~~P~~v~~lv~~lk~~~-~~pi~~H~H 200 (582)
T TIGR01108 172 AGILTPKAAYELVSALKKRF-GLPVHLHSH 200 (582)
T ss_pred CCCcCHHHHHHHHHHHHHhC-CCceEEEec
Confidence 36888999999998876 478777664
No 370
>KOG2335|consensus
Probab=52.21 E-value=67 Score=34.12 Aligned_cols=103 Identities=16% Similarity=0.224 Sum_probs=58.3
Q ss_pred CCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCCCccc-----------------hHHHHHHHhhCCC
Q psy15811 448 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHV-----------------STLVRCIKQSHPT 510 (581)
Q Consensus 448 ~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~~~-----------------~~~l~~l~~~~~~ 510 (581)
+-|.++.|+-+ |-+.+.+|++.+ .+..++|++||.-|..+ -++++.++... +
T Consensus 73 D~PLIvQf~~n------dp~~ll~Aa~lv----~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l-~ 141 (358)
T KOG2335|consen 73 DRPLIVQFGGN------DPENLLKAARLV----QPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANL-N 141 (358)
T ss_pred CCceEEEEcCC------CHHHHHHHHHHh----hhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhc-C
Confidence 57999999653 344566666654 34458999999545332 12233333333 3
Q ss_pred CeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEE---eecC-----CCchHHHHHHHHHHhc
Q psy15811 511 VQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII---GGCC-----EVTSYEIQQMRIMIDE 574 (581)
Q Consensus 511 ~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii---GGCC-----Gt~P~hI~al~~~l~~ 574 (581)
.|+.+.--.+ .|.+.-.++++...+.|++++ |=.| .+.|.++.+|+...+.
T Consensus 142 ~pVs~KIRI~-------------~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~ 200 (358)
T KOG2335|consen 142 VPVSVKIRIF-------------VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVREN 200 (358)
T ss_pred CCeEEEEEec-------------CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHh
Confidence 4544333222 234566677777778888765 2222 3667666666655443
No 371
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=52.19 E-value=2e+02 Score=31.80 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=63.6
Q ss_pred HHHHHHhCCCCEEEec-ccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 413 NVEALVRAGVDYLALE-TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 413 ~~~~l~~~gvD~i~~E-T~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
-++...++|+|.|-+- .+++...++.+++.+++ .++.+-+++++....+ -+-+.+.+.++.+ ...+++.|.+--
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~-~G~~v~~~i~~t~~p~-~~~~~~~~~a~~l---~~~Gad~I~i~D 175 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDVRNLETAVKATKK-AGGHAQVAISYTTSPV-HTIDYFVKLAKEM---QEMGADSICIKD 175 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHH-cCCeEEEEEEeecCCC-CCHHHHHHHHHHH---HHcCCCEEEEcC
Confidence 3444567899987554 44455667778888887 4777665555433322 1112244455544 445677777765
Q ss_pred ----CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 492 ----VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 492 ----~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
..|..+..+++.++... ++|+.+.-.
T Consensus 176 t~G~l~P~~v~~lv~alk~~~-~~pi~~H~H 205 (448)
T PRK12331 176 MAGILTPYVAYELVKRIKEAV-TVPLEVHTH 205 (448)
T ss_pred CCCCCCHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 26888999999998876 588887663
No 372
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=52.04 E-value=2e+02 Score=28.18 Aligned_cols=116 Identities=12% Similarity=0.142 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-CCCccchHHHHHHHhhCCCCeEEE
Q psy15811 437 LALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIV 515 (581)
Q Consensus 437 ~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC-~~p~~~~~~l~~l~~~~~~~pl~~ 515 (581)
..+++.+++. +.++++=+-+.| .|.+....++.+ ...+++.+-+++ .++..+..+++..+..+ ..-+++
T Consensus 39 ~~~v~~l~~~-~~~v~lD~K~~D-----ig~t~~~~~~~~---~~~gad~vTvh~~~g~~~l~~~~~~~~~~~-~~v~~v 108 (213)
T TIGR01740 39 DKIIDELAKL-NKLIFLDLKFAD-----IPNTVKLQYESK---IKQGADMVNVHGVAGSESVEAAKEAASEGG-RGLLAV 108 (213)
T ss_pred HHHHHHHHHc-CCCEEEEEeecc-----hHHHHHHHHHHH---HhcCCCEEEEcCCCCHHHHHHHHHHhhcCC-CeEEEE
Confidence 3567777774 556665553332 356666676665 356889999999 55555766776665443 112222
Q ss_pred --eeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHHHHh
Q psy15811 516 --YPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMID 573 (581)
Q Consensus 516 --ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~~l~ 573 (581)
.-|.+.. .|... -.+...+.++++.+.|+ .|.= |.|+.++.+++...
T Consensus 109 ~~lss~~~~------~~~~~-~~~~v~~~a~~~~~~g~--~g~v--~~~~~~~~ir~~~~ 157 (213)
T TIGR01740 109 TELTSMGSL------DYGED-TMEKVLEYAKEAKAFGL--DGPV--CSAEEAKEIRKFTG 157 (213)
T ss_pred EcCCCCChh------hhCcC-HHHHHHHHHHHhhhcCC--eEEE--eCHHHHHHHHHhcC
Confidence 2233211 12111 12356667777777666 4554 45999999988753
No 373
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=51.79 E-value=1.8e+02 Score=28.64 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDD 460 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~ 460 (581)
+.++.+.+.|+|.+.+-|.- +.+...+.++.+++....+++|+.++.+
T Consensus 87 ~d~~~~~~~G~~~vilg~~~-l~~~~~~~~~~~~~~~~~i~vsld~~~~ 134 (232)
T TIGR03572 87 EDAKKLLSLGADKVSINTAA-LENPDLIEEAARRFGSQCVVVSIDVKKE 134 (232)
T ss_pred HHHHHHHHcCCCEEEEChhH-hcCHHHHHHHHHHcCCceEEEEEEeccC
Confidence 44555666799998876432 2233344445555433336788887653
No 374
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=51.78 E-value=2.5e+02 Score=29.65 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeccc----------C---C---------HHHHH---HHHHHHHhcCCC-eEEEEEE
Q psy15811 403 EADLIAWHRPNVEALVRAGVDYLALETI----------P---A---------EKEAL---ALVKLLREFPGQ-KAWLSFS 456 (581)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~gvD~i~~ET~----------p---~---------~~Ea~---a~~~~~~~~~~~-pv~iSft 456 (581)
.+++.+.|.+.++.+.++|.|.|-+=.- | . ...++ .+++++|+..+. |+.+-++
T Consensus 147 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis 226 (338)
T cd02933 147 IPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLS 226 (338)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEEC
Confidence 4677888999999999999999855311 1 1 12233 455555543343 5555554
Q ss_pred EcCCC-cCCCCCcHHHHHHHHHhhCCCCceEEEECCCCC-----ccchHHHHHHHhhCCCCeEEEe
Q psy15811 457 CKDDT-HTSHGELISSAVTSCLLANPDQIQAIGVNCVRP-----SHVSTLVRCIKQSHPTVQTIVY 516 (581)
Q Consensus 457 ~~~~~-~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p-----~~~~~~l~~l~~~~~~~pl~~y 516 (581)
..+.. ....|.++++.+..+..+...+++.|-|.+... .......+.+++.. ++|+++-
T Consensus 227 ~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~-~ipvi~~ 291 (338)
T cd02933 227 PFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAF-KGPLIAA 291 (338)
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHc-CCCEEEE
Confidence 43321 112356777766655444455678777755211 23445566777765 5887763
No 375
>PRK11430 putative CoA-transferase; Provisional
Probab=51.66 E-value=36 Score=36.68 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=41.6
Q ss_pred cccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccccccccc
Q psy15811 35 VYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLL 114 (581)
Q Consensus 35 ~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~ 114 (581)
.++|..|+-.+.+++ |-+.|||+.+| |+ +..+.++|++.+.++++ .
T Consensus 75 ~lDLk~~~Gr~~~~~--L~~~ADVvien-~r--pg~~~rlGl~y~~L~~~--------------------------n--- 120 (381)
T PRK11430 75 VLDLKNDHDKSIFIN--MLKQADVLAEN-FR--PGTMEKLGFSWETLQEI--------------------------N--- 120 (381)
T ss_pred EecCCCHHHHHHHHH--HHhcCCEEEeC-CC--ccHHHHcCCCHHHHHHH--------------------------C---
Confidence 456778876555444 34569999998 65 77788999986655321 1
Q ss_pred CCCeEEEeecCCcCC
Q psy15811 115 TGHIETAASIGPYGT 129 (581)
Q Consensus 115 ~~~~~VagsiGP~g~ 129 (581)
+.+|..||..+|.
T Consensus 121 --P~LI~~sisgfG~ 133 (381)
T PRK11430 121 --PRLIYASSSGFGH 133 (381)
T ss_pred --CCceEEeeeeCCC
Confidence 6688999988886
No 376
>PLN02334 ribulose-phosphate 3-epimerase
Probab=51.56 E-value=2.3e+02 Score=27.90 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCC--HHHHH---HHHHHHHhcCCCeEEEEEEE-------------cCCCcCCCCC-
Q psy15811 407 IAWHRPNVEALVRAGVDYLALETIPA--EKEAL---ALVKLLREFPGQKAWLSFSC-------------KDDTHTSHGE- 467 (581)
Q Consensus 407 ~~~~~~~~~~l~~~gvD~i~~ET~p~--~~Ea~---a~~~~~~~~~~~pv~iSft~-------------~~~~~l~~G~- 467 (581)
...+.++++.+.++|+|.|=+=-+-. ..... ..++.+++.+..|+-+++-+ .-++-+.+.+
T Consensus 19 ~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q 98 (229)
T PLN02334 19 FANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQ 98 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeecc
Q ss_pred -cHHHHHHHHHhhCCCCceEEEECCCCCccchHHHHHHHhh--CCCCeEEEeeCCCCCccccccc-ccCCcCHHHHHHHH
Q psy15811 468 -LISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQS--HPTVQTIVYPNKGGVWDSVHMK-WLDTEDEYSILHYV 543 (581)
Q Consensus 468 -~~~~~~~~l~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~--~~~~pl~~ypNag~~~~~~~~~-~~~~~~~~~~~~~~ 543 (581)
.-......++.....+. -+|+-| +|......++.+... .+ .+++ |.++...++. | +....+.+
T Consensus 99 ~~~d~~~~~~~~i~~~g~-~iGls~-~~~t~~~~~~~~~~~~~~D--yi~~----~~v~pg~~~~~~-----~~~~~~~i 165 (229)
T PLN02334 99 ASTIHLHRLIQQIKSAGM-KAGVVL-NPGTPVEAVEPVVEKGLVD--MVLV----MSVEPGFGGQSF-----IPSMMDKV 165 (229)
T ss_pred ccchhHHHHHHHHHHCCC-eEEEEE-CCCCCHHHHHHHHhccCCC--EEEE----EEEecCCCcccc-----CHHHHHHH
Q ss_pred HHHHHc----CCcEEeecCCCchHHHHHHHHH
Q psy15811 544 PQWLEE----GVNIIGGCCEVTSYEIQQMRIM 571 (581)
Q Consensus 544 ~~w~~~----G~~iiGGCCGt~P~hI~al~~~ 571 (581)
+++.+. -+.++|| .++++|+.+.+.
T Consensus 166 ~~~~~~~~~~~I~a~GG---I~~e~i~~l~~a 194 (229)
T PLN02334 166 RALRKKYPELDIEVDGG---VGPSTIDKAAEA 194 (229)
T ss_pred HHHHHhCCCCcEEEeCC---CCHHHHHHHHHc
No 377
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=51.47 E-value=3.1e+02 Score=29.25 Aligned_cols=89 Identities=12% Similarity=0.101 Sum_probs=54.2
Q ss_pred HHHHHHCCCcEEEEE-----------ccCCHHHHHH----HHHHHHhcCCCcEEEE----EEEcCCCcCCCCCCHHHHHH
Q psy15811 158 VEALVRAGVDYLALE-----------TIPAEKEALA----LVKLLREFPGQKAWLS----FSCKDDTHTSHGELISSAVT 218 (581)
Q Consensus 158 ~~~l~~~gvD~l~~E-----------T~~~~~E~~a----a~~a~~~~~~~pv~is----ft~~~~g~l~~G~~~~~~~~ 218 (581)
++..+++|+|.+.+- .-.+.+|+.. +++.+|+. ++.+-+. |.++..++. +-+.+.+.++
T Consensus 127 ie~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~-Gl~v~~~is~~fg~p~~~r~-~~~~l~~~~~ 204 (347)
T PLN02746 127 FEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKH-SIPVRGYVSCVVGCPIEGPV-PPSKVAYVAK 204 (347)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEeeecCCccCCC-CHHHHHHHHH
Confidence 455668899987655 2345556554 56666664 6666533 334445543 2233444444
Q ss_pred HHHhhCCCCceEEEeCCC----ChhhHHHHHHHHHhh
Q psy15811 219 SCLLANPDQIQAIGVNCV----RPSHVSTLVRCIKQS 251 (581)
Q Consensus 219 ~~~~~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~ 251 (581)
.+. ..|++.|.+-=+ .|..+..+++.+++.
T Consensus 205 ~~~---~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 205 ELY---DMGCYEISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHH---HcCCCEEEecCCcCCcCHHHHHHHHHHHHHh
Confidence 444 577887766443 499999999999874
No 378
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=51.47 E-value=1.8e+02 Score=31.33 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=56.8
Q ss_pred HHHHHHCCCcEEEEE-ccCCH--------------HHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHh
Q psy15811 158 VEALVRAGVDYLALE-TIPAE--------------KEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 222 (581)
Q Consensus 158 ~~~l~~~gvD~l~~E-T~~~~--------------~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~ 222 (581)
++...++|+|.+-+- ..++. +.++.+++.+++. +.. ++|++++.++. +-..+.+.+..+.
T Consensus 81 i~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~-G~~--v~~~~ed~~r~-~~~~l~~~~~~~~- 155 (378)
T PRK11858 81 IDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDH-GLY--VSFSAEDASRT-DLDFLIEFAKAAE- 155 (378)
T ss_pred HHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCe--EEEEeccCCCC-CHHHHHHHHHHHH-
Confidence 566678899986444 33332 4445566666664 554 55667655444 2233344444443
Q ss_pred hCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 223 ANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 223 ~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
..|++.|.+-=+ .|..+..+++.+++. .++||.+.
T Consensus 156 --~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~-~~~~l~~H 194 (378)
T PRK11858 156 --EAGADRVRFCDTVGILDPFTMYELVKELVEA-VDIPIEVH 194 (378)
T ss_pred --hCCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCeEEEE
Confidence 466776555333 499999999999875 45565544
No 379
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=51.41 E-value=90 Score=34.81 Aligned_cols=118 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEE
Q psy15811 42 EACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETA 121 (581)
Q Consensus 42 e~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~Va 121 (581)
+.+.+.-+.++++|+|+|.-.+=+.+ .+...+.-++.+..+-. -.+++
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~-----------------~~~~~~~i~~ik~~~p~---------------~~v~a 273 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH-----------------QEKMLEALRAVRALDPG---------------VPIVA 273 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc-----------------cHHHHHHHHHHHHHCCC---------------CeEEe
Q ss_pred eecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEE---------------EEccCCHHHHHHHHHH
Q psy15811 122 ASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLA---------------LETIPAEKEALALVKL 186 (581)
Q Consensus 122 gsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~---------------~ET~~~~~E~~aa~~a 186 (581)
|.+.-... ++.|+++|+|+|- -.+.|.+.-+..+.++
T Consensus 274 gnv~t~~~----------------------------a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~ 325 (479)
T PRK07807 274 GNVVTAEG----------------------------TRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAA 325 (479)
T ss_pred eccCCHHH----------------------------HHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHH
Q ss_pred HHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 187 LREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 187 ~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
+++. +.|||. +|.......+..++ ..|++++.+
T Consensus 326 ~~~~-~~~via------~ggi~~~~~~~~al-------~~ga~~v~~ 358 (479)
T PRK07807 326 AREL-GAHVWA------DGGVRHPRDVALAL-------AAGASNVMI 358 (479)
T ss_pred HHhc-CCcEEe------cCCCCCHHHHHHHH-------HcCCCeeec
No 380
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=51.11 E-value=65 Score=35.87 Aligned_cols=67 Identities=19% Similarity=0.118 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEEc-cCCHHHHHHHHHHHHh-cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCce
Q psy15811 152 AWHRPNVEALVRAGVDYLALET-IPAEKEALALVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ 229 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET-~~~~~E~~aa~~a~~~-~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~ 229 (581)
....++++.|+++|||.|.+-+ -.+..-+..+++.+|+ ++++|||+-+ +.+.+.+. .+. ..|++
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~----------~~t~~~~~-~l~---~~G~d 289 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGN----------VVSAEGVR-DLL---EAGAN 289 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEec----------cCCHHHHH-HHH---HhCCC
Confidence 3456899999999999999984 4566666777788874 4689999822 34454443 333 36778
Q ss_pred EEE
Q psy15811 230 AIG 232 (581)
Q Consensus 230 ~vG 232 (581)
+|.
T Consensus 290 ~i~ 292 (475)
T TIGR01303 290 IIK 292 (475)
T ss_pred EEE
Confidence 774
No 381
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=51.05 E-value=3.1e+02 Score=29.03 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=63.2
Q ss_pred HHHHHHhCCCCEEEecccCC-HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 413 NVEALVRAGVDYLALETIPA-EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 413 ~~~~l~~~gvD~i~~ET~p~-~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
.++...+.|+|.|-+-|.-+ ...++..++.+|+ .+..+.+.+..- +..+.+..++.+......+++.|.+--
T Consensus 92 dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~-~G~~v~~~l~~s------~~~~~e~l~~~a~~~~~~Ga~~i~i~D 164 (333)
T TIGR03217 92 DLKAAYDAGARTVRVATHCTEADVSEQHIGMARE-LGMDTVGFLMMS------HMTPPEKLAEQAKLMESYGADCVYIVD 164 (333)
T ss_pred HHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHH-cCCeEEEEEEcc------cCCCHHHHHHHHHHHHhcCCCEEEEcc
Confidence 35666778999987776544 4455666777776 477777666432 234455444444333455667666654
Q ss_pred C----CCccchHHHHHHHhhC-CCCeEEEeeC
Q psy15811 492 V----RPSHVSTLVRCIKQSH-PTVQTIVYPN 518 (581)
Q Consensus 492 ~----~p~~~~~~l~~l~~~~-~~~pl~~ypN 518 (581)
+ .|+.+..+++.++... +++|+++...
T Consensus 165 T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H 196 (333)
T TIGR03217 165 SAGAMLPDDVRDRVRALKAVLKPETQVGFHAH 196 (333)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 2 6888888888888764 2478887764
No 382
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=50.96 E-value=1.3e+02 Score=34.43 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc----CCCcEEEEEEEc
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF----PGQKAWLSFSCK 202 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~----~~~pv~isft~~ 202 (581)
+.--+|+..|.++|+|++= =|+|+.++|++.-...++. ..+|+++-+.|+
T Consensus 41 ~atv~Qi~~l~~aGceiVR-vtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~ 94 (611)
T PRK02048 41 EACVAQAKRIIDAGGEYVR-LTTQGVREAENLMNINIGLRSQGYMVPLVADVHFN 94 (611)
T ss_pred HHHHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCC
Confidence 4456799999999999875 4889998887665544432 368988876665
No 383
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=50.86 E-value=3.7e+02 Score=29.42 Aligned_cols=151 Identities=12% Similarity=0.042 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE----Eec---ccCCHHHHHHHHHHHHh---cCCCeEEEEEEEcCCCcCCCCCcHH
Q psy15811 401 MTEADLIAWHRPNVEALVRAGVDYL----ALE---TIPAEKEALALVKLLRE---FPGQKAWLSFSCKDDTHTSHGELIS 470 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~gvD~i----~~E---T~p~~~Ea~a~~~~~~~---~~~~pv~iSft~~~~~~l~~G~~~~ 470 (581)
++.+++.+. +..+...|+|+| .+. -.|-.+-.+++.+++++ .++.+.+-.+.+ +|. ..
T Consensus 144 lsp~~~a~~----~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~Ni-------T~~-~~ 211 (412)
T cd08213 144 LSPEEHAEV----AYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANI-------TAP-VR 211 (412)
T ss_pred CCHHHHHHH----HHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEe-------cCC-HH
Confidence 566665554 444556899997 232 23335556666666663 477777766655 232 44
Q ss_pred HHHHHHHhhCCCCceEEEECC--CCCccchHHHHHHHhh--CCCCeEEEeeCCCCCccccc-ccccCCcCHHHHHHHHHH
Q psy15811 471 SAVTSCLLANPDQIQAIGVNC--VRPSHVSTLVRCIKQS--HPTVQTIVYPNKGGVWDSVH-MKWLDTEDEYSILHYVPQ 545 (581)
Q Consensus 471 ~~~~~l~~~~~~~~~~iGiNC--~~p~~~~~~l~~l~~~--~~~~pl~~ypNag~~~~~~~-~~~~~~~~~~~~~~~~~~ 545 (581)
+..+..+.....+..++.+|. ++.. +++.|+.. ..+.|+...|+.-..+..+. .++ .+.-+.+-
T Consensus 212 em~~ra~~a~e~G~~~~mv~~~~~G~~----~l~~l~~~~~~~~l~ihaHra~~ga~~r~~~~Gi-------s~~~l~kl 280 (412)
T cd08213 212 EMERRAELVADLGGKYVMIDVVVAGWS----ALQYLRDLAEDYGLAIHAHRAMHAAFTRNPRHGI-------SMLVLAKL 280 (412)
T ss_pred HHHHHHHHHHHhCCCeEEeeccccChH----HHHHHHHhccccCeEEEECCCcceecccCCcCcC-------cHHHHHHH
Confidence 444443322334556667777 2322 24444442 12589999998755544321 122 12233444
Q ss_pred HHHcCCcE-----EeecCCCchHHHHHHHHHHhc
Q psy15811 546 WLEEGVNI-----IGGCCEVTSYEIQQMRIMIDE 574 (581)
Q Consensus 546 w~~~G~~i-----iGGCCGt~P~hI~al~~~l~~ 574 (581)
|+-.|+.. ++|==..+++....+++.+..
T Consensus 281 ~RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~~ 314 (412)
T cd08213 281 YRLIGVDQLHIGTAVGKMEGDKEEVLRIADILRE 314 (412)
T ss_pred HHHcCCCccccCCccCCcCCCHHHHHHHHHHHHh
Confidence 55566533 255555678888888887753
No 384
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=50.56 E-value=1.1e+02 Score=31.01 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=57.9
Q ss_pred HHHHHHHCCCcEEEEE---ccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 157 NVEALVRAGVDYLALE---TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 157 q~~~l~~~gvD~l~~E---T~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
.++.+...|-|++++. +-.+++++...+.+++.. +.+.+| |.++.. . ..+.+++ +.|+++|-+
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~-g~~~lV--------Rvp~~~-~-~~i~r~L---D~Ga~giiv 97 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGS-ASAPVV--------RVPTNE-P-VIIKRLL---DIGFYNFLI 97 (256)
T ss_pred HHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhc-CCCcEE--------ECCCCC-H-HHHHHHh---CCCCCeeee
Confidence 4677888999999997 567899999999988764 666676 333333 2 3344544 589999998
Q ss_pred CCC-ChhhHHHHHHHHH
Q psy15811 234 NCV-RPSHVSTLVRCIK 249 (581)
Q Consensus 234 NC~-~p~~~~~~l~~l~ 249 (581)
-.. .+++...+++..+
T Consensus 98 P~v~tae~a~~~v~a~k 114 (256)
T PRK10558 98 PFVETAEEARRAVASTR 114 (256)
T ss_pred cCcCCHHHHHHHHHHcC
Confidence 887 7888888877654
No 385
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=50.50 E-value=1.1e+02 Score=34.68 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=70.9
Q ss_pred HHHHHHHhCCCCEEEecccCCH--HH---------HHHHHHHHHhcCCCeEEEEEEEcCC--------------------
Q psy15811 412 PNVEALVRAGVDYLALETIPAE--KE---------ALALVKLLREFPGQKAWLSFSCKDD-------------------- 460 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~--~E---------a~a~~~~~~~~~~~pv~iSft~~~~-------------------- 460 (581)
++++.++++|+|-+.+-|.--. +| -..+-++.+++.+.-+++|+-.++.
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~ 417 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGP 417 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCc
Confidence 8889999999999999884321 11 2456666777655568888876532
Q ss_pred --------------CcCCCCCcHHHHHHHHHhhCCCCceEEEECCCCCccc-----hHHHHHHHhhCCCCeEEEeeCCCC
Q psy15811 461 --------------THTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHV-----STLVRCIKQSHPTVQTIVYPNKGG 521 (581)
Q Consensus 461 --------------~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~~~-----~~~l~~l~~~~~~~pl~~ypNag~ 521 (581)
++-..+-++.+.++.+ ...++--|-+|+.+-+-+ ..+++.++... ++|+++.--+|.
T Consensus 418 ~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~---~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~-~ipviasGG~g~ 493 (538)
T PLN02617 418 NGEEYAWYQCTVKGGREGRPIGAYELAKAV---EELGAGEILLNCIDCDGQGKGFDIELVKLVSDAV-TIPVIASSGAGT 493 (538)
T ss_pred CcccceEEEEEEecCcccCCCCHHHHHHHH---HhcCCCEEEEeeccccccccCcCHHHHHHHHhhC-CCCEEEECCCCC
Confidence 1112355677777777 334556778888543322 45677777765 699998887774
Q ss_pred C
Q psy15811 522 V 522 (581)
Q Consensus 522 ~ 522 (581)
+
T Consensus 494 ~ 494 (538)
T PLN02617 494 P 494 (538)
T ss_pred H
Confidence 3
No 386
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=50.47 E-value=1.5e+02 Score=30.63 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=38.1
Q ss_pred CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCCC------------ccchHHHHHHHhhCCCCeEE
Q psy15811 447 PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRP------------SHVSTLVRCIKQSHPTVQTI 514 (581)
Q Consensus 447 ~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p------------~~~~~~l~~l~~~~~~~pl~ 514 (581)
.+.|+++|+... -+.+.++++.+.+....++++|=+|+..| +.+.++++.++... ++|++
T Consensus 90 ~~~pvivsi~g~-------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~ 161 (294)
T cd04741 90 SAKPFFISVTGS-------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVG 161 (294)
T ss_pred cCCeEEEECCCC-------HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEE
Confidence 478999999431 12333444444211112578888998533 44566677777765 58888
Q ss_pred EeeC
Q psy15811 515 VYPN 518 (581)
Q Consensus 515 ~ypN 518 (581)
+.--
T Consensus 162 vKl~ 165 (294)
T cd04741 162 VKTP 165 (294)
T ss_pred EEeC
Confidence 7653
No 387
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=50.25 E-value=1.2e+02 Score=30.81 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=57.6
Q ss_pred HHHHHHHCCCcEEEEE---ccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 157 NVEALVRAGVDYLALE---TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 157 q~~~l~~~gvD~l~~E---T~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
.++.+...|.|++++. +-.+..++..++.+++.. +.+.+| |.++.. . ..+.+++ +.|+++|.+
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~-g~~~~V--------Rvp~~~-~-~~i~r~L---D~Ga~gIiv 90 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGS-ASAPVV--------RPPWNE-P-VIIKRLL---DIGFYNFLI 90 (249)
T ss_pred HHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhc-CCCcEE--------ECCCCC-H-HHHHHHh---cCCCCEEEe
Confidence 4677788999999997 566888999999988764 666676 333333 2 3345554 589999999
Q ss_pred CCC-ChhhHHHHHHHHH
Q psy15811 234 NCV-RPSHVSTLVRCIK 249 (581)
Q Consensus 234 NC~-~p~~~~~~l~~l~ 249 (581)
-.. .+++...+++..+
T Consensus 91 P~v~taeea~~~v~a~k 107 (249)
T TIGR03239 91 PFVESAEEAERAVAATR 107 (249)
T ss_pred cCcCCHHHHHHHHHHcC
Confidence 887 7888888877654
No 388
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=50.07 E-value=1.4e+02 Score=35.38 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEE-E----ccCCHHHHHHHHHHHHhc----CCCcEEEEEEEcCCCcCCCCCCHHHHH
Q psy15811 147 EADLIAWHRPNVEALVRAGVDYLAL-E----TIPAEKEALALVKLLREF----PGQKAWLSFSCKDDTHTSHGELISSAV 217 (581)
Q Consensus 147 ~~~~~~~~~~q~~~l~~~gvD~l~~-E----T~~~~~E~~aa~~a~~~~----~~~pv~isft~~~~g~l~~G~~~~~~~ 217 (581)
.+++...|.+.++.|.++||+.|=+ | |-....+..+..++.+.. ++.+++++..|. ++.+.+
T Consensus 173 l~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg---------~~~~~~ 243 (750)
T TIGR01371 173 LEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD---------SVGDAL 243 (750)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC---------chHHHH
Confidence 4678889999999999999998733 2 222333445554555432 245666655444 244555
Q ss_pred HHHHhhCCCCceEEEeCCC-ChhhHH
Q psy15811 218 TSCLLANPDQIQAIGVNCV-RPSHVS 242 (581)
Q Consensus 218 ~~~~~~~~~~~~~vGvNC~-~p~~~~ 242 (581)
..+. ...++++|+-++ +++.+.
T Consensus 244 ~~l~---~lpvd~l~lD~v~~~~~L~ 266 (750)
T TIGR01371 244 EALV---SLPVKGIGLDFVHGKGTLE 266 (750)
T ss_pred HHHH---cCCCCEEEEEeccCcccHH
Confidence 5554 577999999998 565443
No 389
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=50.01 E-value=3.3e+02 Score=28.55 Aligned_cols=135 Identities=10% Similarity=0.089 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCCEEE-ecccCC---HH--------HHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHH
Q psy15811 410 HRPNVEALVRAGVDYLA-LETIPA---EK--------EALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSC 476 (581)
Q Consensus 410 ~~~~~~~l~~~gvD~i~-~ET~p~---~~--------Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l 476 (581)
-.+.++.+.++|+|++. ++..+. .. =.+-+++.+++. .+.| +++|+.. +. ..+..+
T Consensus 182 ~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~-ilh~cg~--------~~--~~~~~~ 250 (338)
T TIGR01464 182 TIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPNVP-VILFAKG--------AG--HLLEEL 250 (338)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEeCC--------cH--HHHHHH
Confidence 34555666678999875 554333 22 223455566553 2445 4677642 11 233445
Q ss_pred HhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCC----c
Q psy15811 477 LLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGV----N 552 (581)
Q Consensus 477 ~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~----~ 552 (581)
. ..++++++++... .+ +..+... +.-+.+.-|--+ . .. ..++++..+.+++.++.+. -
T Consensus 251 ~---~~~~~~~s~d~~~--dl----~e~~~~~-~~~~~i~Gni~p----~--~l--~gt~e~i~~~v~~~l~~~~~~~g~ 312 (338)
T TIGR01464 251 A---ETGADVVGLDWTV--DL----KEARKRV-GPGVAIQGNLDP----A--VL--YAPEEALEEKVEKILEAFGGKSRY 312 (338)
T ss_pred H---hcCCCEEEeCCCC--CH----HHHHHHh-CCCeeEEeCCCh----H--Hh--cCCHHHHHHHHHHHHHHhccCCCc
Confidence 2 2356777777621 12 2223222 123455555521 1 11 1247789999999887643 3
Q ss_pred EEe-ecC---CCchHHHHHHHHHHh
Q psy15811 553 IIG-GCC---EVTSYEIQQMRIMID 573 (581)
Q Consensus 553 iiG-GCC---Gt~P~hI~al~~~l~ 573 (581)
|+. ||. +|.++.|+++.+.++
T Consensus 313 Il~~Gc~i~~~tp~eni~a~v~a~~ 337 (338)
T TIGR01464 313 IFNLGHGILPDTPPENVKALVEYVH 337 (338)
T ss_pred eecCCCcCCCCcCHHHHHHHHHHHh
Confidence 554 554 678899999988765
No 390
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.99 E-value=1.3e+02 Score=29.79 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=48.8
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe--
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV-- 233 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv-- 233 (581)
+|++..+++|++|++--.+ . ..+++++++. ++|++- .-.++.++..+. ..|++.|++
T Consensus 79 ~~~~~a~~aGA~FivsP~~---~--~~v~~~~~~~-~i~~iP-----------G~~T~~E~~~A~----~~Gad~vklFP 137 (213)
T PRK06552 79 VTARLAILAGAQFIVSPSF---N--RETAKICNLY-QIPYLP-----------GCMTVTEIVTAL----EAGSEIVKLFP 137 (213)
T ss_pred HHHHHHHHcCCCEEECCCC---C--HHHHHHHHHc-CCCEEC-----------CcCCHHHHHHHH----HcCCCEEEECC
Confidence 4677888999999994333 2 3455666664 788762 234677776654 378999999
Q ss_pred -CCCChhhHHHHHHHHHhhCCCCceE
Q psy15811 234 -NCVRPSHVSTLVRCIKQSHPTVQTI 258 (581)
Q Consensus 234 -NC~~p~~~~~~l~~l~~~~~~~p~~ 258 (581)
...+|+. ++.++....++|++
T Consensus 138 a~~~G~~~----ik~l~~~~p~ip~~ 159 (213)
T PRK06552 138 GSTLGPSF----IKAIKGPLPQVNVM 159 (213)
T ss_pred cccCCHHH----HHHHhhhCCCCEEE
Confidence 4445543 55555432345544
No 391
>PRK00957 methionine synthase; Provisional
Probab=49.94 E-value=3.1e+02 Score=28.29 Aligned_cols=136 Identities=14% Similarity=0.088 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeccc--C-CHHHHHHHHHHHHh---cCCCeEEEEEEEcCCCcCCCCCcHHHHHHHH
Q psy15811 403 EADLIAWHRPNVEALVRAGVDYLALETI--P-AEKEALALVKLLRE---FPGQKAWLSFSCKDDTHTSHGELISSAVTSC 476 (581)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~gvD~i~~ET~--p-~~~Ea~a~~~~~~~---~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l 476 (581)
..++.+.|++.++.|.+.|++.|-+..- + .+.+.+.+.+++++ ..+.++.+|.| |. ....+..+
T Consensus 139 ~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~~~~~~~~~~~~~~~i~~~v~lH~C---------G~-~~~i~~~l 208 (305)
T PRK00957 139 IYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYDLEVAKKAIDIITKGLNVPVAMHVC---------GD-VSNIIDDL 208 (305)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCchHHHHHHHHHHHHHhhCCceEEEEC---------CC-cHHHHHHH
Confidence 5778899999999999999998655321 1 12233333444443 23566677775 21 23445555
Q ss_pred HhhCCCCceEEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHH-cCC--cE
Q psy15811 477 LLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLE-EGV--NI 553 (581)
Q Consensus 477 ~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~G~--~i 553 (581)
...+++++++-.++...-...++.....+..+-+++.+- . ..| ..+++...+.+++-.+ .+. -+
T Consensus 209 ---~~~~vd~i~ld~~~~~~~l~~l~~~~~~~k~l~~GvId~-~-------~~~--~e~~e~v~~~i~~~~~~~~~~~l~ 275 (305)
T PRK00957 209 ---LKFNVDILDHEFASNKKNLEILEEKDLIGKKIGFGCVDT-K-------SKS--VESVDEIKALIEEGIEILGAENIL 275 (305)
T ss_pred ---HhCCCCEEEEeecCCCCCHHHHhhhccCCCEEEEEEEcC-C-------CCC--CCCHHHHHHHHHHHHHhcCHHHEE
Confidence 245788888888543322222222100110122333332 1 113 3346777766665554 232 26
Q ss_pred EeecCCCc
Q psy15811 554 IGGCCEVT 561 (581)
Q Consensus 554 iGGCCGt~ 561 (581)
|.=-||..
T Consensus 276 lsp~CGl~ 283 (305)
T PRK00957 276 IDPDCGMR 283 (305)
T ss_pred ECCCcCCC
Confidence 77778883
No 392
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=49.94 E-value=2.4e+02 Score=28.80 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcC------CCcCCCCCCHHHHHH---HHH
Q psy15811 151 IAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKD------DTHTSHGELISSAVT---SCL 221 (581)
Q Consensus 151 ~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~------~g~l~~G~~~~~~~~---~~~ 221 (581)
.++++.-.+.+.++|+|.+=+|-= .|+...++.+.+. ++||+--+=+.+ +|+-.-|.+-+++-+ .+.
T Consensus 93 ~~a~~nA~r~~ke~gA~aVKlEGG---~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~ 168 (268)
T COG0413 93 EQALKNAARLMKEAGADAVKLEGG---EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAK 168 (268)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCC---HHHHHHHHHHHHc-CCceEEEecCChhhhhccCCeeeecCCHHHHHHHHHHHH
Confidence 345566667777899999999974 4555566666654 899998654432 444445655443332 222
Q ss_pred hhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCceE
Q psy15811 222 LANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTI 258 (581)
Q Consensus 222 ~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~~ 258 (581)
.....|+.++=+-|. |..+.+. +.+. .++|.+
T Consensus 169 ale~AGaf~ivlE~V-p~~lA~~---IT~~-lsiPtI 200 (268)
T COG0413 169 ALEEAGAFALVLECV-PAELAKE---ITEK-LSIPTI 200 (268)
T ss_pred HHHhcCceEEEEecc-HHHHHHH---HHhc-CCCCEE
Confidence 234689999999998 5544333 3332 445544
No 393
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=49.70 E-value=25 Score=37.27 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCcEEE---EEccC------------CHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHH
Q psy15811 155 RPNVEALVRAGVDYLA---LETIP------------AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTS 219 (581)
Q Consensus 155 ~~q~~~l~~~gvD~l~---~ET~~------------~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~ 219 (581)
.++++.|.++|+|.+. .|+++ +.++...+++.+++. ++++..+|-+. .|++.++.+..
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~-Gi~v~s~~i~G------~~Et~ed~~~~ 213 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL-GIPTTATIMYG------HVETPEHWVDH 213 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHc-CCcccceEEEe------cCCCHHHHHHH
Confidence 5677888888988765 36554 444555566666654 56655544442 34555554443
No 394
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=49.67 E-value=1e+02 Score=33.61 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCcEE-----EEE--ccCCHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHH
Q psy15811 152 AWHRPNVEALVRAGVDYL-----ALE--TIPAEKEALALVKLLREF---PGQKAWLSFSCKDDTHTSHGELISSAVTSCL 221 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l-----~~E--T~~~~~E~~aa~~a~~~~---~~~pv~isft~~~~g~l~~G~~~~~~~~~~~ 221 (581)
+.|.+++..+..+|+|+| +.. -.|-.+-++++.+++++. ++...+-++.+ +|. +.+..+++.
T Consensus 159 ~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-------T~~-~~em~~ra~ 230 (406)
T cd08207 159 EETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNI-------TDD-IDEMRRNHD 230 (406)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEec-------CCC-HHHHHHHHH
Q ss_pred hhCCCCceEEEeCCC--ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 222 LANPDQIQAIGVNCV--RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 222 ~~~~~~~~~vGvNC~--~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
-....|+.++.+|.. |. ..++.|++. .++||...|+
T Consensus 231 ~~~~~G~~~~mv~~~~~G~----~~l~~l~~~-~~l~IhaHra 268 (406)
T cd08207 231 LVVEAGGTCVMVSLNSVGL----SGLAALRRH-SQLPIHGHRN 268 (406)
T ss_pred HHHHhCCCeEEEeccccch----HHHHHHHhc-CCceEEECCC
No 395
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=49.54 E-value=2.4e+02 Score=28.26 Aligned_cols=98 Identities=10% Similarity=0.086 Sum_probs=61.8
Q ss_pred HHHHHHH-CCCcEEEEEccC--CHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 157 NVEALVR-AGVDYLALETIP--AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 157 q~~~l~~-~gvD~l~~ET~~--~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
.++.+.+ .++|++=+|... +.+.+...+..+++ .+..+++|.--- ..+++=..+.+.+..+. ..++|.+=+
T Consensus 88 ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~-~~~~vI~S~H~F--~~TP~~~~l~~~~~~m~---~~gaDi~Ki 161 (238)
T PRK13575 88 LLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQ-YNKEVVISHHNF--ESTPPLDELKFIFFKMQ---KFNPEYVKL 161 (238)
T ss_pred HHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHH-cCCEEEEecCCC--CCCCCHHHHHHHHHHHH---HhCCCEEEE
Confidence 3344444 469999999654 55666666677765 388999987521 23444344555555554 467888888
Q ss_pred CCC--ChhhHHHHHHHHHhh--CCCCceEEe
Q psy15811 234 NCV--RPSHVSTLVRCIKQS--HPTVQTIVY 260 (581)
Q Consensus 234 NC~--~p~~~~~~l~~l~~~--~~~~p~~~~ 260 (581)
-|. .+.+...+++..... ..+.|++..
T Consensus 162 Av~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i 192 (238)
T PRK13575 162 AVMPHNKNDVLNLLQAMSTFSDTMDCKVVGI 192 (238)
T ss_pred EecCCCHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 885 588888888765542 134566544
No 396
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=49.51 E-value=2e+02 Score=34.00 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCCCCHHH---HHHHHHHHHHHHHHCCCcEEEEEcc---------------------CC----HHHHHHHHHHHHhc--C
Q psy15811 142 VDSMTEAD---LIAWHRPNVEALVRAGVDYLALETI---------------------PA----EKEALALVKLLREF--P 191 (581)
Q Consensus 142 ~~~~~~~~---~~~~~~~q~~~l~~~gvD~l~~ET~---------------------~~----~~E~~aa~~a~~~~--~ 191 (581)
.+++|.+| +.+.|.+-++...++|.|.|=+=-- .+ ..=+..+++++|+. +
T Consensus 538 p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~ 617 (765)
T PRK08255 538 PREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPA 617 (765)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCC
Confidence 35677655 5677887777788899999844211 01 23345566777754 3
Q ss_pred CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 192 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 192 ~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
+.||.+-++.. +....|.++++.+..+......++|.|-|-.
T Consensus 618 ~~~v~~ri~~~--~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 618 EKPMSVRISAH--DWVEGGNTPDDAVEIARAFKAAGADLIDVSS 659 (765)
T ss_pred CCeeEEEEccc--cccCCCCCHHHHHHHHHHHHhcCCcEEEeCC
Confidence 56777766653 2344577787766544333356788887754
No 397
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.40 E-value=91 Score=32.35 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=42.7
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
|+...+++|+|.|++..|+ .+|++.+++.+++. ...+.+-. ..|-+++.+.+-+ ..|+|.|.+--
T Consensus 211 ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~-~~~v~iea--------SGGI~~~ni~~yA----~tGvD~Is~ga 275 (289)
T PRK07896 211 QLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDAR-APTVLLES--------SGGLTLDTAAAYA----ETGVDYLAVGA 275 (289)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhcc-CCCEEEEE--------ECCCCHHHHHHHH----hcCCCEEEeCh
Confidence 3444468999999999987 99999999987754 22222211 1345565544332 47889888766
No 398
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=49.36 E-value=84 Score=34.31 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=20.8
Q ss_pred CCcEEeecCCCchHHHHHHHHHHhcc
Q psy15811 550 GVNIIGGCCEVTSYEIQQMRIMIDEF 575 (581)
Q Consensus 550 G~~iiGGCCGt~P~hI~al~~~l~~~ 575 (581)
.++|||||.- +|.++++|++.|...
T Consensus 159 ~VNiig~~~~-~~~D~~eik~lL~~~ 183 (417)
T cd01966 159 QVNLLPGAHL-TPGDVEELKDIIEAF 183 (417)
T ss_pred cEEEECCCCC-CHHHHHHHHHHHHHc
Confidence 3999999944 699999999998754
No 399
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=49.21 E-value=90 Score=35.34 Aligned_cols=50 Identities=18% Similarity=0.044 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhc----CCCcEEEEEEEc
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF----PGQKAWLSFSCK 202 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~----~~~pv~isft~~ 202 (581)
+.--+|+..|.++|+|++= =|+|+.++|++.-..-+.. ..+|++.-+-|+
T Consensus 45 ~atv~Qi~~L~~aGceiVR-vtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 98 (606)
T PRK00694 45 DGTVRQICALQEWGCDIVR-VTVQGLKEAQACEHIKERLIQQGISIPLVADIHFF 98 (606)
T ss_pred HHHHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCC
Confidence 3456799999999999875 4889998887655444431 368888876554
No 400
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=49.10 E-value=1.3e+02 Score=30.35 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=53.7
Q ss_pred HHHHHHHCCCcEEEEE---ccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 157 NVEALVRAGVDYLALE---TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 157 q~~~l~~~gvD~l~~E---T~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
.++.+...|.|++++. +..+..++..++.+++.. +..++|- .+...+ . .+.++. +.|+++|-+
T Consensus 25 ~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~-g~~~~VR--------v~~~~~-~-~i~~~L---d~Ga~gIiv 90 (249)
T TIGR02311 25 AAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPY-PSSPVVR--------PAIGDP-V-LIKQLL---DIGAQTLLV 90 (249)
T ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhc-CCCcEEE--------CCCCCH-H-HHHHHh---CCCCCEEEe
Confidence 3566778999999997 455777777777777654 4566653 222222 2 344444 588998888
Q ss_pred CCC-ChhhHHHHHHHHH
Q psy15811 234 NCV-RPSHVSTLVRCIK 249 (581)
Q Consensus 234 NC~-~p~~~~~~l~~l~ 249 (581)
=-. .++++..+++.++
T Consensus 91 P~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 91 PMIETAEQAEAAVAATR 107 (249)
T ss_pred cCcCCHHHHHHHHHHcC
Confidence 887 7998888877655
No 401
>PRK04326 methionine synthase; Provisional
Probab=48.91 E-value=3.3e+02 Score=28.36 Aligned_cols=135 Identities=17% Similarity=0.137 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEeccc--C-CHHHHHHHHHHHHhc---CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHH
Q psy15811 404 ADLIAWHRPNVEALVRAGVDYLALETI--P-AEKEALALVKLLREF---PGQKAWLSFSCKDDTHTSHGELISSAVTSCL 477 (581)
Q Consensus 404 ~~~~~~~~~~~~~l~~~gvD~i~~ET~--p-~~~Ea~a~~~~~~~~---~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~ 477 (581)
.++.+.+++.++.|.+.|++.|-+.-- . +..+.+.+.+++++. .+.++++|.|+.+ ....+..+
T Consensus 157 ~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~---------~~~~~~~l- 226 (330)
T PRK04326 157 FDLAKVINEEIKNLVEAGAKYIQIDEPALATHPEDVEIAVEALNRIVKGINAKLGLHVCYGD---------YSRIAPYI- 226 (330)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCchhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCCC---------cHHHHHHH-
Confidence 578899999999999999997655431 1 234555555666542 2567788887632 23445555
Q ss_pred hhCCCCceEEEECCCCCccchHHHHHHHhh--CCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCc---
Q psy15811 478 LANPDQIQAIGVNCVRPSHVSTLVRCIKQS--HPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVN--- 552 (581)
Q Consensus 478 ~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~--~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~--- 552 (581)
...+++++++--.... ..-|+.++.. +..+-+++.+. . ..| ..++++..+.+++.++ ++.
T Consensus 227 --~~~~vd~i~~d~~~~~--~~~l~~~~~~~~~~~l~~Gvv~~-~-------~~~--~~~~e~v~~~v~~~~~-~~~~~~ 291 (330)
T PRK04326 227 --LEFPVDQFDLEFANGN--YKLLDLLKEYGFDKELGLGVIDV-H-------SAR--VESVEEIKEAIKKGLE-YVPPEK 291 (330)
T ss_pred --HhCCCCEEEEEeCCCC--chhHHHhhccCCCCeEEeEEEeC-C-------CCC--CCCHHHHHHHHHHHHH-hCChhh
Confidence 2446777776653321 1244445443 11123333332 1 113 3357888888888777 443
Q ss_pred -EEeecCCCchH
Q psy15811 553 -IIGGCCEVTSY 563 (581)
Q Consensus 553 -iiGGCCGt~P~ 563 (581)
++.=-||..+-
T Consensus 292 ~~lsp~Cgl~~~ 303 (330)
T PRK04326 292 LYINPDCGLKLL 303 (330)
T ss_pred EEECCCCCCCcC
Confidence 67777887743
No 402
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=48.89 E-value=1.1e+02 Score=34.59 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=57.6
Q ss_pred HHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-
Q psy15811 413 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC- 491 (581)
Q Consensus 413 ~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC- 491 (581)
..+...+.++|+|=+|..... +....+..++. .+..+++|+. +-..+++-+.+.+.++.+. ..+++.+=+-+
T Consensus 102 ll~~~~~~~~d~iDiEl~~~~-~~~~~~~~~~~-~~~~vI~S~H--~f~~tP~~~el~~~~~~~~---~~gaDi~Kia~~ 174 (529)
T PLN02520 102 ALRLAMELGADYVDVELKVAH-EFINSISGKKP-EKCKVIVSSH--NYENTPSVEELGNLVARIQ---ATGADIVKIATT 174 (529)
T ss_pred HHHHHHHhCCCEEEEEcCCch-hHHHHHHhhhh-cCCEEEEEec--CCCCCCCHHHHHHHHHHHH---HhCCCEEEEecC
Confidence 334445568999999965433 55555556665 5788999883 4344555444555666553 33556666666
Q ss_pred -CCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 492 -VRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 492 -~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
.++.++..+++..... +.|++.+.-
T Consensus 175 ~~~~~D~~~ll~~~~~~--~~p~i~~~M 200 (529)
T PLN02520 175 ALDITDVARMFQITVHS--QVPTIGLVM 200 (529)
T ss_pred CCCHHHHHHHHHHHhhc--CCCEEEEec
Confidence 3455566666544332 567776553
No 403
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=48.70 E-value=1.3e+02 Score=33.60 Aligned_cols=65 Identities=25% Similarity=0.263 Sum_probs=44.6
Q ss_pred HHHHHHHHhCCCCEEEeccc-CCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEE
Q psy15811 411 RPNVEALVRAGVDYLALETI-PAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIG 488 (581)
Q Consensus 411 ~~~~~~l~~~gvD~i~~ET~-p~~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iG 488 (581)
.++++.|.++|+|+|++.+- .........++.+++. ++.|+++. ++.+.+++...+ ..++++|.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g----------~v~t~e~a~~l~----~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAG----------NVATAEAARALI----EAGADAVK 295 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEe----------ccCCHHHHHHHH----HcCCCEEE
Confidence 48999999999999988763 5555566667777753 57898873 355666666654 23556654
Q ss_pred E
Q psy15811 489 V 489 (581)
Q Consensus 489 i 489 (581)
+
T Consensus 296 v 296 (486)
T PRK05567 296 V 296 (486)
T ss_pred E
Confidence 4
No 404
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=48.64 E-value=41 Score=35.12 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=43.3
Q ss_pred HCCCc-EEEEEccCCHHHHHH---HHHHHHhcC-CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC
Q psy15811 163 RAGVD-YLALETIPAEKEALA---LVKLLREFP-GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR 237 (581)
Q Consensus 163 ~~gvD-~l~~ET~~~~~E~~a---a~~a~~~~~-~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~ 237 (581)
+-|++ +.+=|-+..-.-+.. ..+.+...+ +.|+++++.- .+++.+.+++......++++|-+||++
T Consensus 19 ~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g---------~~~~~~~~aa~~~~~~~~~~IDlN~GC 89 (309)
T PF01207_consen 19 EFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFG---------NDPEDLAEAAEIVAELGFDGIDLNMGC 89 (309)
T ss_dssp CCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE----------S-HHHHHHHHHHHCCTT-SEEEEEE--
T ss_pred HHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEee---------ccHHHHHHHHHhhhccCCcEEeccCCC
Confidence 45777 666665543221111 112222222 4689998844 334444443333335789999999986
Q ss_pred hh-----------------hHHHHHHHHHhhCCCCceEEecC
Q psy15811 238 PS-----------------HVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 238 p~-----------------~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
|. .+.++|+.+.+. .++|+++.-.
T Consensus 90 P~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-~~~pvsvKiR 130 (309)
T PF01207_consen 90 PAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-VPIPVSVKIR 130 (309)
T ss_dssp -SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEE
T ss_pred CHHHHhcCCcChhhhcChHHhhHHHHhhhcc-cccceEEecc
Confidence 53 344566666664 5677777633
No 405
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=48.63 E-value=1.1e+02 Score=33.51 Aligned_cols=101 Identities=11% Similarity=-0.006 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHCCCcEE-----EE-EccCCH-HHHHHHHHHHHh---cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHh
Q psy15811 153 WHRPNVEALVRAGVDYL-----AL-ETIPAE-KEALALVKLLRE---FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 222 (581)
Q Consensus 153 ~~~~q~~~l~~~gvD~l-----~~-ET~~~~-~E~~aa~~a~~~---~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~ 222 (581)
.|.+++..+..+|+|++ +. ..+.-. +-+++..+++++ .++.+.+-.+.+. |. ..+..+++.-
T Consensus 148 ~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT-------~~-~~em~~ra~~ 219 (412)
T cd08213 148 EHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANIT-------AP-VREMERRAEL 219 (412)
T ss_pred HHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEec-------CC-HHHHHHHHHH
Confidence 35666777888999997 32 334333 345555566653 2466656555443 22 5556555444
Q ss_pred hCCCCceEEEeCCC--ChhhHHHHHHHHHhhCCCCceEEecCC
Q psy15811 223 ANPDQIQAIGVNCV--RPSHVSTLVRCIKQSHPTVQTIVYPNK 263 (581)
Q Consensus 223 ~~~~~~~~vGvNC~--~p~~~~~~l~~l~~~~~~~p~~~~pna 263 (581)
....|..++.+|.. |... ...|+..... .++||...|+-
T Consensus 220 a~e~G~~~~mv~~~~~G~~~-l~~l~~~~~~-~~l~ihaHra~ 260 (412)
T cd08213 220 VADLGGKYVMIDVVVAGWSA-LQYLRDLAED-YGLAIHAHRAM 260 (412)
T ss_pred HHHhCCCeEEeeccccChHH-HHHHHHhccc-cCeEEEECCCc
Confidence 44578889999984 4433 3444433322 56888888774
No 406
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=48.36 E-value=2.4e+02 Score=28.30 Aligned_cols=99 Identities=8% Similarity=-0.001 Sum_probs=55.2
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCC---c------CCCCCcHHHHHHHHHhhCCC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDT---H------TSHGELISSAVTSCLLANPD 482 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~---~------l~~G~~~~~~~~~l~~~~~~ 482 (581)
++++.+++.|+|-+++-|..- .+...+-++.+++.+. +++|+-.+.++ . ..++.++.+.++.+. ..
T Consensus 87 e~~~~~l~~Ga~~vvigT~a~-~~p~~~~~~~~~~g~~-ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~---~~ 161 (243)
T TIGR01919 87 SSLRAALTGGRARVNGGTAAL-ENPWWAAAVIRYGGDI-VAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLD---SG 161 (243)
T ss_pred HHHHHHHHcCCCEEEECchhh-CCHHHHHHHHHHcccc-EEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHH---hC
Confidence 778888889999999877533 2333444556665444 78899876222 1 225566777777763 33
Q ss_pred CceEEEECCCCCcc-----chHHHHHHHhhCCCCeEEEe
Q psy15811 483 QIQAIGVNCVRPSH-----VSTLVRCIKQSHPTVQTIVY 516 (581)
Q Consensus 483 ~~~~iGiNC~~p~~-----~~~~l~~l~~~~~~~pl~~y 516 (581)
++..|-++..+-+- =..++++++... +.|+++-
T Consensus 162 g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~-~~pvias 199 (243)
T TIGR01919 162 GCSRVVVTDSKKDGLSGGPNELLLEVVAART-DAIVAAS 199 (243)
T ss_pred CCCEEEEEecCCcccCCCcCHHHHHHHHhhC-CCCEEEE
Confidence 33344444422211 123445555543 4565443
No 407
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.32 E-value=83 Score=32.47 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=44.5
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcC-CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeC
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFP-GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 234 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~-~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvN 234 (581)
+|+...+++|+|.|++.+| +.++++.++..+++.. +-.+.+-. ..|.+++.+-+.+ ..|+|.|.+-
T Consensus 193 eea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~~lea--------SGGI~~~ni~~yA----~tGvD~Is~g 259 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERVKIEV--------SGGITPENIEEYA----KLDVDVISLG 259 (278)
T ss_pred HHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCEEEEE--------ECCCCHHHHHHHH----HcCCCEEEeC
Confidence 4556667899999999998 6889999999887641 11222211 1355565544332 4788998887
Q ss_pred C
Q psy15811 235 C 235 (581)
Q Consensus 235 C 235 (581)
.
T Consensus 260 a 260 (278)
T PRK08385 260 A 260 (278)
T ss_pred h
Confidence 6
No 408
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=48.31 E-value=2.5e+02 Score=28.69 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=56.4
Q ss_pred HHHHHHHCCCcEEEEEccC---------------CHHHHHHHHHHHHhcCCCcEEEEE-EEcCCCcCCCCCCHHHHHHHH
Q psy15811 157 NVEALVRAGVDYLALETIP---------------AEKEALALVKLLREFPGQKAWLSF-SCKDDTHTSHGELISSAVTSC 220 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~---------------~~~E~~aa~~a~~~~~~~pv~isf-t~~~~g~l~~G~~~~~~~~~~ 220 (581)
-++..++.|+|.+-+-+-. .++.++.+++.+|+. +..+.++. .+ .++.. .+++.++..+
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~-G~~v~~~~~~~-~d~~~---~~~~~~~~~~ 157 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSH-GREVIFDAEHF-FDGYK---ANPEYALATL 157 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-CCeEEEeEEec-cccCC---CCHHHHHHHH
Confidence 3566778999987664322 233455566677765 67665542 22 12211 2343333333
Q ss_pred HhhCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEec
Q psy15811 221 LLANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 221 ~~~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~p 261 (581)
......+++.|.+-=+ .|..+..+++.+++...++||.+..
T Consensus 158 ~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~ 202 (273)
T cd07941 158 KAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHA 202 (273)
T ss_pred HHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEe
Confidence 2222466766554322 5999999999998753446666553
No 409
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=48.14 E-value=3.4e+02 Score=28.15 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCceEEecCCCcccc-CCC-----chhhhccccC--c
Q psy15811 211 ELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLL-DGS-----FTSQVSRHTI--K 282 (581)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~~~~pnag~~~~-dG~-----~gt~L~~~~g--~ 282 (581)
.+..+.+..+.+ .+-..--+||...+.+..+++.-.. .+.|++++-..+-.-. -|. +...+.+... .
T Consensus 4 v~~~~lL~~A~~---~~yAV~AfN~~n~e~~~avi~AAe~--~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~V 78 (285)
T PRK07709 4 VSMKEMLNKALE---GKYAVGQFNMNNLEWTQAILAAAEE--EKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITV 78 (285)
T ss_pred CcHHHHHHHHHH---CCceEEEEEECCHHHHHHHHHHHHH--HCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCC
Q ss_pred ccCCCCcccccccCCChHHHHHHHHHHHHHHHhhcCCcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15811 283 DVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGV 362 (581)
Q Consensus 283 ~~~g~~lws~~~~~~~Pe~v~~vh~~yl~aiI~Tna~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~ 362 (581)
++--+ ++|-..+..+ +.-|++ +|.+...|+|. ++-++..++.+..|++|+..
T Consensus 79 PV~lH--------LDHg~~~e~i-~~ai~~---------GftSVM~DgS~--------lp~eeNi~~Trevv~~Ah~~-- 130 (285)
T PRK07709 79 PVAIH--------LDHGSSFEKC-KEAIDA---------GFTSVMIDASH--------HPFEENVETTKKVVEYAHAR-- 130 (285)
T ss_pred cEEEE--------CCCCCCHHHH-HHHHHc---------CCCEEEEeCCC--------CCHHHHHHHHHHHHHHHHHc--
Q ss_pred hhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15811 363 DYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVD-------SMTEADLIAWHRPNVEALVRAGVDYLAL 427 (581)
Q Consensus 363 ~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~-------~~~~~~~~~~~~~~~~~l~~~gvD~i~~ 427 (581)
.+.|=|-+|-.| |.-++ -+++++..+|+++- |||.|.+
T Consensus 131 ----------gv~VEaElG~ig----------g~ed~~~~~~~~yT~peeA~~Fv~~T-------gvD~LAv 175 (285)
T PRK07709 131 ----------NVSVEAELGTVG----------GQEDDVIAEGVIYADPAECKHLVEAT-------GIDCLAP 175 (285)
T ss_pred ----------CCEEEEEEeccC----------CccCCcccccccCCCHHHHHHHHHHh-------CCCEEEE
No 410
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=48.13 E-value=24 Score=31.60 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh
Q psy15811 400 SMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLRE 445 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~ 445 (581)
.-+.++.....+..++.|-+.|+|.|++|.+|.-.+..++..-+++
T Consensus 77 ~~d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~R 122 (125)
T PF03481_consen 77 PGDPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRR 122 (125)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHH
Confidence 4578999999999999999999999999999987777777777765
No 411
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=48.13 E-value=4.1e+02 Score=29.11 Aligned_cols=212 Identities=11% Similarity=0.123 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeE
Q psy15811 40 EPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIE 119 (581)
Q Consensus 40 ~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 119 (581)
.|+...++-.++...|.|+|.=--=.+|.... -+ ++. .++-.+-.+++.++. ++ ...+
T Consensus 158 sp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~---p~-~eR----v~~~~~a~~~a~~eT----------G~----~~~y 215 (412)
T TIGR03326 158 STEEHAKVAYELWSGGVDLLKDDENLTSQPFN---RF-EER----VEKLYKVRDKVEAET----------GE----RKEY 215 (412)
T ss_pred ChHHHHHHHHHHHhcCCceeecCCCCCCCCCc---cH-HHH----HHHHHHHHHHHHHHh----------CC----cceE
Confidence 57888999999999999998766555544221 01 233 333344444444441 22 0222
Q ss_pred EEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHh---cCCCcEE
Q psy15811 120 TAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLRE---FPGQKAW 196 (581)
Q Consensus 120 VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~---~~~~pv~ 196 (581)
.. .|- -+.++ -++|++...+.|++.+++--+..--.+ +..+++ ..++|+.
T Consensus 216 a~-NiT-------------------~~~~e----m~~ra~~~~~~G~~~~mv~~~~~G~~~---l~~l~~~~~~~~l~ih 268 (412)
T TIGR03326 216 LA-NIT-------------------APVRE----MERRAELVADLGGQYVMVDVVVCGWSA---LQYIRELTEDLGLAIH 268 (412)
T ss_pred EE-Eec-------------------CCHHH----HHHHHHHHHHhCCCeEEEEeeccchHH---HHHHHHhhccCCeEEE
Confidence 22 110 01233 356777778889999999887765443 334432 2478888
Q ss_pred EEEEEcC--CCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC-C------hhhHHHHHHHHHhhCCC-CceEEecCCCcc
Q psy15811 197 LSFSCKD--DTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-R------PSHVSTLVRCIKQSHPT-VQTIVYPNKGVK 266 (581)
Q Consensus 197 isft~~~--~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~-~------p~~~~~~l~~l~~~~~~-~p~~~~pnag~~ 266 (581)
.--+.-. ...-.+|-+. .++.++.- -.|+|.+-++-. . ++....+.+.+++.+.. +|.+=.|..|+-
T Consensus 269 ~Hra~~ga~~~~~~~Gis~-~vl~kl~R--LaGaD~~~~~t~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sGG~~ 345 (412)
T TIGR03326 269 AHRAMHAAFTRNPKHGISM-FALAKLYR--LIGVDQLHTGTAGVGKLEGGKEDTKQINDFLRQKWHHIKPVFPVSSGGLH 345 (412)
T ss_pred EcCCcccccccCCCCcCcH-HHHHHHHH--HcCCCeeeeCCCccCCCCCCHHHHHHHHHHHhCcccCCCCceEecCCCCC
Confidence 7332210 1112357777 44555543 578888888775 2 44455555555542111 333333333311
Q ss_pred ccCCCchhhhccccCcccC---CCCcccccccCCChHHHHHHHHHHHHH
Q psy15811 267 LLDGSFTSQVSRHTIKDVD---GHPLWSSVYLTTEPEACVETHRDFIRG 312 (581)
Q Consensus 267 ~~dG~~gt~L~~~~g~~~~---g~~lws~~~~~~~Pe~v~~vh~~yl~a 312 (581)
.+..-++.+.+|.++. |+- ..-||+-...=-+.+.+|
T Consensus 346 ---~~~vp~~~~~~G~Dvil~~GGG------i~gHp~G~~aGa~A~rqA 385 (412)
T TIGR03326 346 ---PGLVPPLIDALGKDLVIQAGGG------VHGHPDGPRAGAKALRAA 385 (412)
T ss_pred ---hhHHHHHHHhcCCceEEecCCc------cccCCCChhhHHHHHHHH
Confidence 1112233344465421 332 456787666554555555
No 412
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=48.12 E-value=1.4e+02 Score=29.43 Aligned_cols=142 Identities=14% Similarity=0.097 Sum_probs=76.3
Q ss_pred EecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCC-------cCCCCCcHHHHHHHHHhhCCCCceEEEECC-C-----
Q psy15811 426 ALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDT-------HTSHGELISSAVTSCLLANPDQIQAIGVNC-V----- 492 (581)
Q Consensus 426 ~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~-------~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC-~----- 492 (581)
.+--+|.........+..++ .+..|++++-..+.+ .|..+.+-++....+......-+.++|+|. .
T Consensus 24 T~ai~P~~~~~~~~a~~a~~-~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T 102 (213)
T PF04748_consen 24 TFAILPYAPYSREWAERARA-AGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGSRFT 102 (213)
T ss_dssp EEEEETTSTTHHHHHHHHHH-CT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHH
T ss_pred EEEECCCCCChHHHHHHHHH-cCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCcccc
Confidence 34445665666777777777 699999999865543 466677777777776555566667889999 3
Q ss_pred -CCccchHHHHHHHhhCCCCeEEEeeCCC------------CCcccccccccCC-cCHHHHHHH----HHHHHHcC-CcE
Q psy15811 493 -RPSHVSTLVRCIKQSHPTVQTIVYPNKG------------GVWDSVHMKWLDT-EDEYSILHY----VPQWLEEG-VNI 553 (581)
Q Consensus 493 -~p~~~~~~l~~l~~~~~~~pl~~ypNag------------~~~~~~~~~~~~~-~~~~~~~~~----~~~w~~~G-~~i 553 (581)
+...|..+++.|+..+ ..++..--.+ .++-.. +.|.++ .+.+.+..+ ++.-.+.| +-.
T Consensus 103 ~~~~~m~~vl~~l~~~g--l~FvDS~T~~~s~a~~~A~~~gvp~~~r-dvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~ 179 (213)
T PF04748_consen 103 SDREAMRWVLEVLKERG--LFFVDSRTTPRSVAPQVAKELGVPAARR-DVFLDNDQDEAAIRRQLDQAARIARKQGSAIA 179 (213)
T ss_dssp C-HHHHHHHHHHHHHTT---EEEE-S--TT-SHHHHHHHCT--EEE--SEETTST-SHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCHHHHHHHHHHHHHcC--CEEEeCCCCcccHHHHHHHHcCCCEEee-ceecCCCCCHHHHHHHHHHHHHhhhhcCcEEE
Confidence 3345677788888753 3444222111 111111 334443 334444333 33334456 666
Q ss_pred EeecCCCchHHHHHHHHHHhc
Q psy15811 554 IGGCCEVTSYEIQQMRIMIDE 574 (581)
Q Consensus 554 iGGCCGt~P~hI~al~~~l~~ 574 (581)
||= ..|+-|++|++.+..
T Consensus 180 Igh---~~p~Tl~~L~~~~~~ 197 (213)
T PF04748_consen 180 IGH---PRPETLEALEEWLPE 197 (213)
T ss_dssp EEE----SCCHHHHHHHHHHH
T ss_pred EEc---CCHHHHHHHHHHHhH
Confidence 775 566677777766653
No 413
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.03 E-value=3.7e+02 Score=28.60 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=68.8
Q ss_pred HHHHhCCCCEEEeccc--CC---------HHHHHHHHHHHHhcCCCeEEEEE-EEcCCCcCCCC-----CcHHHHHHHHH
Q psy15811 415 EALVRAGVDYLALETI--PA---------EKEALALVKLLREFPGQKAWLSF-SCKDDTHTSHG-----ELISSAVTSCL 477 (581)
Q Consensus 415 ~~l~~~gvD~i~~ET~--p~---------~~Ea~a~~~~~~~~~~~pv~iSf-t~~~~~~l~~G-----~~~~~~~~~l~ 477 (581)
+.+++.|+|.+-+=.+ |+ ...+..+.+..++ .++|+++-+ +....+...+. ...+-++..++
T Consensus 113 e~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~-~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r 191 (340)
T PRK12858 113 RRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRA-NDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTME 191 (340)
T ss_pred HHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHH-cCCceEEEEeccCCCccccccccccccCHHHHHHHHH
Confidence 3456789998766444 33 1123333444444 599999976 43333333333 22333333332
Q ss_pred hhC--CCCceEEEECC-CCCccch---------------HHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHH
Q psy15811 478 LAN--PDQIQAIGVNC-VRPSHVS---------------TLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSI 539 (581)
Q Consensus 478 ~~~--~~~~~~iGiNC-~~p~~~~---------------~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~ 539 (581)
... ..+++.+=+.- ..+..+. ..++++.... ++|+++-.- | + +.+.|
T Consensus 192 ~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~-~~P~vvlsg-G-~------------~~~~f 256 (340)
T PRK12858 192 EFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT-DLPFIFLSA-G-V------------SPELF 256 (340)
T ss_pred HHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC-CCCEEEECC-C-C------------CHHHH
Confidence 223 36778887776 3332222 4556665555 578655432 2 1 13356
Q ss_pred HHHHHHHHHcCCcEEeecCC
Q psy15811 540 LHYVPQWLEEGVNIIGGCCE 559 (581)
Q Consensus 540 ~~~~~~w~~~G~~iiGGCCG 559 (581)
.+.++.-++.|+++-|=+||
T Consensus 257 ~~~l~~A~~aGa~f~Gvl~G 276 (340)
T PRK12858 257 RRTLEFACEAGADFSGVLCG 276 (340)
T ss_pred HHHHHHHHHcCCCccchhhh
Confidence 66666667777777777776
No 414
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=48.03 E-value=2.2e+02 Score=28.64 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=57.4
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHH-HHhcCCCcEEE--EEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKL-LREFPGQKAWL--SFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a-~~~~~~~pv~i--sft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
.+++|.+-|+.=|.+-| |-.+++-..+.. +.+ .+.-|.. +|-+.++.. ..-.+.+.....+.+....++|+|-+
T Consensus 111 ~~~AL~alg~~RIalvT-PY~~~v~~~~~~~l~~-~G~eV~~~~~~~~~~~~~-ia~i~p~~i~~~~~~~~~~~aDAifi 187 (239)
T TIGR02990 111 AVDGLAALGVRRISLLT-PYTPETSRPMAQYFAV-RGFEIVNFTCLGLTDDRE-MARISPDCIVEAALAAFDPDADALFL 187 (239)
T ss_pred HHHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHHh-CCcEEeeeeccCCCCCce-eeecCHHHHHHHHHHhcCCCCCEEEE
Confidence 35566667999888888 555565554444 443 3555544 333333322 22234444444443333578999999
Q ss_pred CCCChhhHHHHHHHHHhhCCCCceE
Q psy15811 234 NCVRPSHVSTLVRCIKQSHPTVQTI 258 (581)
Q Consensus 234 NC~~p~~~~~~l~~l~~~~~~~p~~ 258 (581)
-|+.-. ..+++..+.+. ..+|++
T Consensus 188 sCTnLr-t~~vi~~lE~~-lGkPVl 210 (239)
T TIGR02990 188 SCTALR-AATCAQRIEQA-IGKPVV 210 (239)
T ss_pred eCCCch-hHHHHHHHHHH-HCCCEE
Confidence 999543 45778888775 677874
No 415
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=47.95 E-value=1.4e+02 Score=34.80 Aligned_cols=50 Identities=16% Similarity=0.045 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHh----cCCCcEEEEEEEc
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLRE----FPGQKAWLSFSCK 202 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~----~~~~pv~isft~~ 202 (581)
+.--+|+..|.++|+|++= =|+++.++|++.-..-++ -..+|++.-+.|+
T Consensus 110 eatv~Qi~~l~~aGceiVR-vtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 163 (733)
T PLN02925 110 EATVDQVMRIADKGADIVR-ITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFA 163 (733)
T ss_pred HHHHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCC
Confidence 4456799999999999885 488999888765544432 2368988876654
No 416
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=47.74 E-value=2.1e+02 Score=30.77 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=45.4
Q ss_pred HHHHHHHCCCc--EEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCC--CHHHHHHHHHhhCC-CCceEE
Q psy15811 157 NVEALVRAGVD--YLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGE--LISSAVTSCLLANP-DQIQAI 231 (581)
Q Consensus 157 q~~~l~~~gvD--~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~--~~~~~~~~~~~~~~-~~~~~v 231 (581)
.++.+.+.|+| +++++. .++.|++.. + +-.+.++--+++. .|..|+ .+.+.+..+.+... .+...+
T Consensus 282 ~l~~l~~~g~~~v~~~~~~-~dl~~ak~~---~----g~~~~i~GNl~p~-~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl 352 (378)
T cd03308 282 YLEYLQELPKGKTVGLFEY-GDPKKVKEK---L----GDKKCIAGGFPTT-LLKYGTPEECIDYVKELLDTLAPGGGFIF 352 (378)
T ss_pred HHHHHHhcCCCcEEEcCCC-CCHHHHHHH---h----CCCEEEEcCCCCH-HHhcCCHHHHHHHHHHHHHHhCCCCCEEE
Confidence 46778888998 677776 677765432 2 2123343344443 444444 35555555554221 234688
Q ss_pred EeCCC-Ch------hhHHHHHHHH
Q psy15811 232 GVNCV-RP------SHVSTLVRCI 248 (581)
Q Consensus 232 GvNC~-~p------~~~~~~l~~l 248 (581)
+.-|. .| +++..+++.+
T Consensus 353 ~~gcgi~p~tp~~~eNi~a~v~av 376 (378)
T cd03308 353 GTDKPIISADDAKPENLIAVIEFV 376 (378)
T ss_pred eCCCcCCCCCCCChHHHHHHHHHH
Confidence 99996 22 5555555443
No 417
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=47.54 E-value=1.1e+02 Score=33.02 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHCCCcEEEEEc---------------cCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHH
Q psy15811 152 AWHRPNVEALVRAGVDYLALET---------------IPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSA 216 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET---------------~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~ 216 (581)
+.|.+.++.+.+.|+|+|=+-- -.+.+.+..+++++++..++|+|+-++- +-+++.+.
T Consensus 127 ~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP-------n~t~i~~i 199 (385)
T PLN02495 127 DAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP-------NITDITQP 199 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC-------ChhhHHHH
Confidence 3455566667788999986532 1355667777888887668999998862 22347777
Q ss_pred HHHHHhhCCCCceEEE-eCC
Q psy15811 217 VTSCLLANPDQIQAIG-VNC 235 (581)
Q Consensus 217 ~~~~~~~~~~~~~~vG-vNC 235 (581)
+..+.+ .|+++|- +|=
T Consensus 200 a~aa~~---~Gadgi~liNT 216 (385)
T PLN02495 200 ARVALK---SGCEGVAAINT 216 (385)
T ss_pred HHHHHH---hCCCEEEEecc
Confidence 766654 6676544 454
No 418
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=47.14 E-value=57 Score=35.57 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=41.7
Q ss_pred cccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccccccccc
Q psy15811 35 VYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLL 114 (581)
Q Consensus 35 ~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~ 114 (581)
.++|.+|+-.+.+++= -+.|||+.+| |+ +..+.++|++.+.+++ . .
T Consensus 70 ~lDLk~~~g~~~l~~L--v~~ADVvien-~r--pg~~~rlGL~~~~L~~--------------~------------n--- 115 (415)
T TIGR03253 70 TLNTKTPEGKEVLEEL--IKKADVMVEN-FG--PGALDRMGFTWEYIQE--------------I------------N--- 115 (415)
T ss_pred EeeCCCHHHHHHHHHH--HhhCCEEEEC-CC--CChHHHcCCCHHHHHH--------------h------------C---
Confidence 5668888865555442 3569999988 65 5678899997665432 1 1
Q ss_pred CCCeEEEeecCCcCC
Q psy15811 115 TGHIETAASIGPYGT 129 (581)
Q Consensus 115 ~~~~~VagsiGP~g~ 129 (581)
+-+|..||..+|.
T Consensus 116 --P~LV~~sisgfG~ 128 (415)
T TIGR03253 116 --PRLILASIKGFGE 128 (415)
T ss_pred --CCeEEEEeeecCC
Confidence 6689999999986
No 419
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=46.98 E-value=2.3e+02 Score=29.90 Aligned_cols=116 Identities=18% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCC-CEEEecccCCHHHHHH-HHHHHHh-cCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCCCCcc
Q psy15811 420 AGV-DYLALETIPAEKEALA-LVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSH 496 (581)
Q Consensus 420 ~gv-D~i~~ET~p~~~Ea~a-~~~~~~~-~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~~p~~ 496 (581)
.|+ |++.-|.+....=... ....+.. ..+.|+.+++. |.++++.++........++++|-|||..|..
T Consensus 33 ~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~---------g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~ 103 (333)
T PRK11815 33 LSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG---------GSDPADLAEAAKLAEDWGYDEINLNVGCPSD 103 (333)
T ss_pred hCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe---------CCCHHHHHHHHHHHHhcCCCEEEEcCCCCHH
Confidence 355 8887777655210000 1122221 13578888883 4444444443322244578899999954422
Q ss_pred -----------------chHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEE
Q psy15811 497 -----------------VSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNII 554 (581)
Q Consensus 497 -----------------~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~ii 554 (581)
+..+++.++... ++|+.++--.| |....+.....++++.+.+.|+..|
T Consensus 104 ~v~~~~~Gs~L~~~p~~~~eiv~avr~~v-~~pVsvKiR~g---------~~~~~t~~~~~~~~~~l~~aG~d~i 168 (333)
T PRK11815 104 RVQNGRFGACLMAEPELVADCVKAMKDAV-SIPVTVKHRIG---------IDDQDSYEFLCDFVDTVAEAGCDTF 168 (333)
T ss_pred HccCCCeeeHHhcCHHHHHHHHHHHHHHc-CCceEEEEEee---------eCCCcCHHHHHHHHHHHHHhCCCEE
Confidence 224455665544 57888764221 2111123456677777888887765
No 420
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=46.78 E-value=40 Score=39.42 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHH---HHHHHhcCCCeEEEEE
Q psy15811 391 SEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALAL---VKLLREFPGQKAWLSF 455 (581)
Q Consensus 391 ~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~---~~~~~~~~~~pv~iSf 455 (581)
.+|+|+..++--..--.+||...++.|.++|+-+|.+-+|.-+..-.++ +.++|+..++|+-+|-
T Consensus 677 iCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHlHT 744 (1149)
T COG1038 677 ICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVDLPIHLHT 744 (1149)
T ss_pred EEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhcCCceEEec
Confidence 3455555543333335689999999999999999999999886554444 5555655789976664
No 421
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=46.69 E-value=3.5e+02 Score=28.90 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCC
Q psy15811 52 IRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVL 131 (581)
Q Consensus 52 l~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~ 131 (581)
+++|++.|...-.-........++.+.+++.+....+++.|++.-. .+.+...-.+.-.
T Consensus 81 ~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~-------------------~v~~~~eda~r~~-- 139 (363)
T TIGR02090 81 IDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGL-------------------IVEFSAEDATRTD-- 139 (363)
T ss_pred HHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-------------------EEEEEEeecCCCC--
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEE-EEEccC--CHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCC
Q psy15811 132 RDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYL-ALETIP--AEKEALALVKLLREFPGQKAWLSFSCKDDTHTS 208 (581)
Q Consensus 132 ~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~gvD~l-~~ET~~--~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~ 208 (581)
.+++.+.++.+.+.|+|-| +.-|+. ...++...++.+++ ..|+-+.|-+-++
T Consensus 140 -------------------~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~--~~~~~l~~H~Hnd---- 194 (363)
T TIGR02090 140 -------------------IDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKE--NVKLPISVHCHND---- 194 (363)
T ss_pred -------------------HHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhc--ccCceEEEEecCC----
Q ss_pred CCCCHHHHHHHHHhhCCCCceEE
Q psy15811 209 HGELISSAVTSCLLANPDQIQAI 231 (581)
Q Consensus 209 ~G~~~~~~~~~~~~~~~~~~~~v 231 (581)
.|..+..++.++ ..|++.|
T Consensus 195 ~GlA~AN~laA~----~aGa~~v 213 (363)
T TIGR02090 195 FGLATANSIAGV----KAGAEQV 213 (363)
T ss_pred CChHHHHHHHHH----HCCCCEE
No 422
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=46.64 E-value=2e+02 Score=28.89 Aligned_cols=108 Identities=9% Similarity=0.046 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecccC--CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHh
Q psy15811 401 MTEADLIAWHRPNVEALVRAGVDYLALETIP--AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 478 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p--~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~ 478 (581)
.+.++..+.++..+ ...++|++=+|... ......-++..+++ .+..+++|. .+-..+++-+.+.+.+..+.
T Consensus 80 ~~~~~~~~ll~~~~---~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~-~~~~vI~S~--H~F~~TP~~~~l~~~~~~m~- 152 (238)
T PRK13575 80 FTNDLYLNLLSDLA---NINGIDMIDIEWQADIDIEKHQRLITHLQQ-YNKEVVISH--HNFESTPPLDELKFIFFKMQ- 152 (238)
T ss_pred CCHHHHHHHHHHHH---HhCCCCEEEEEcccCCChHHHHHHHHHHHH-cCCEEEEec--CCCCCCCCHHHHHHHHHHHH-
Confidence 35555544443222 23468999999653 45555666677776 588999988 34445555455666666663
Q ss_pred hCCCCceEEEECC--CCCccchHHHHHHHhhC--CCCeEEEee
Q psy15811 479 ANPDQIQAIGVNC--VRPSHVSTLVRCIKQSH--PTVQTIVYP 517 (581)
Q Consensus 479 ~~~~~~~~iGiNC--~~p~~~~~~l~~l~~~~--~~~pl~~yp 517 (581)
..+++.+=+-| .++.++..+|+...... .+.|++..+
T Consensus 153 --~~gaDi~KiAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~ 193 (238)
T PRK13575 153 --KFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGIS 193 (238)
T ss_pred --HhCCCEEEEEecCCCHHHHHHHHHHHHHHHhccCCCEEEEe
Confidence 23455655655 56777778877654321 145665554
No 423
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=46.63 E-value=3.7e+02 Score=28.85 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHCCCcEEEE-EccC--CHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHH
Q psy15811 152 AWHRPNVEALVRAGVDYLAL-ETIP--AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCL 221 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~-ET~~--~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~ 221 (581)
+++.+.++.+.+.|+|.|.+ -|+. ...++...++.+++.- ++.++|-+=++ .|..+..++.++.
T Consensus 145 ~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~--~~~l~~H~Hnd----~GlA~AN~laAv~ 211 (378)
T PRK11858 145 DFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV--DIPIEVHCHND----FGMATANALAGIE 211 (378)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCC----cCHHHHHHHHHHH
Confidence 44555666677889998744 4654 6778888888887643 44566766544 4666666665553
No 424
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=46.58 E-value=1.7e+02 Score=29.50 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=65.9
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcC------CCCCcHHHHHHHHHhhCCCCce
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHT------SHGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l------~~G~~~~~~~~~l~~~~~~~~~ 485 (581)
+.++.|++.|++-+++=|+. ..+-..+.++++++. -.+++++.++++... .++.++.+.++.+.+ .++.
T Consensus 88 ~~v~~ll~~G~~rViiGt~a-v~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~---~g~~ 162 (241)
T COG0106 88 EDVEALLDAGVARVIIGTAA-VKNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEE---VGLA 162 (241)
T ss_pred HHHHHHHHCCCCEEEEecce-ecCHHHHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHh---cCCC
Confidence 78889999999999999998 667778888888864 778999999875432 334567788887733 3334
Q ss_pred EEEECCCCCccc-----hHHHHHHHhhCCCCeEEEee
Q psy15811 486 AIGVNCVRPSHV-----STLVRCIKQSHPTVQTIVYP 517 (581)
Q Consensus 486 ~iGiNC~~p~~~-----~~~l~~l~~~~~~~pl~~yp 517 (581)
.|-+--.+-+-+ ..+++++.... ++|++..-
T Consensus 163 ~ii~TdI~~DGtl~G~n~~l~~~l~~~~-~ipviaSG 198 (241)
T COG0106 163 HILYTDISRDGTLSGPNVDLVKELAEAV-DIPVIASG 198 (241)
T ss_pred eEEEEecccccccCCCCHHHHHHHHHHh-CcCEEEec
Confidence 333222222221 13456666655 57766543
No 425
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=46.41 E-value=3.6e+02 Score=28.96 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=30.4
Q ss_pred cCHHHHHHHHHHHHHcCC-c---EEeecCCCc------hHHHHHHHHHHh
Q psy15811 534 EDEYSILHYVPQWLEEGV-N---IIGGCCEVT------SYEIQQMRIMID 573 (581)
Q Consensus 534 ~~~~~~~~~~~~w~~~G~-~---iiGGCCGt~------P~hI~al~~~l~ 573 (581)
.++++..+.+++.++.+. . |++--||.. |+.|+++-+.++
T Consensus 328 Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~ 377 (378)
T cd03308 328 GTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVR 377 (378)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCChHHHHHHHHHHh
Confidence 458889999999998765 4 777766543 489999888765
No 426
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=46.28 E-value=2.7e+02 Score=29.75 Aligned_cols=79 Identities=11% Similarity=0.010 Sum_probs=48.1
Q ss_pred HHHCCCcEEEEEccC-C------HHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCC-------HHHHHHHHHhhCCC
Q psy15811 161 LVRAGVDYLALETIP-A------EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGEL-------ISSAVTSCLLANPD 226 (581)
Q Consensus 161 l~~~gvD~l~~ET~~-~------~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~-------~~~~~~~~~~~~~~ 226 (581)
-++.|+|.+.+=.++ + +.|+..+++.+++. ++|+++ +++..+....+... +.-++.... ..
T Consensus 155 AlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~-GlPlv~-~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaa---EL 229 (348)
T PRK09250 155 ALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHEL-GLATVL-WSYLRNSAFKKDGDYHTAADLTGQANHLAA---TI 229 (348)
T ss_pred HHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-CCCEEE-EecccCcccCCcccccccHHHHHHHHHHHH---HH
Confidence 457899999886665 3 23333344444444 899887 45555555444332 333333333 58
Q ss_pred CceEEEeCCC-ChhhHHHH
Q psy15811 227 QIQAIGVNCV-RPSHVSTL 244 (581)
Q Consensus 227 ~~~~vGvNC~-~p~~~~~~ 244 (581)
|+|.|=++-+ .++.+.++
T Consensus 230 GADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 230 GADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred cCCEEEecCCCChhhHHHh
Confidence 9999999987 46665554
No 427
>COG1804 CaiB Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
Probab=46.20 E-value=45 Score=36.17 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=42.8
Q ss_pred cccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccccccccc
Q psy15811 35 VYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLL 114 (581)
Q Consensus 35 ~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~ 114 (581)
.++|.++|-.+..+ -+-++|||+..| |+ +..|.++|++.+.++++ .
T Consensus 72 ~lDlk~~egre~~~--~Lv~~ADVlien-fr--pG~l~rlGl~ye~L~~~--------------------------N--- 117 (396)
T COG1804 72 ALDLKTEEGREILL--RLVAGADVLIEN-FR--PGVLERLGLGYEALRAI--------------------------N--- 117 (396)
T ss_pred EeecCCHhHHHHHH--HHHhhCceehcc-cc--hhHHHHhCCCHHHHHhh--------------------------C---
Confidence 45677887655543 366889999999 76 66788999986554321 1
Q ss_pred CCCeEEEeecCCcCCC
Q psy15811 115 TGHIETAASIGPYGTV 130 (581)
Q Consensus 115 ~~~~~VagsiGP~g~~ 130 (581)
+.+|-+||--||.+
T Consensus 118 --P~LIy~sisGfGq~ 131 (396)
T COG1804 118 --PRLIYCSISGFGQT 131 (396)
T ss_pred --CCeEEEEEeeCCCC
Confidence 67899999888863
No 428
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=46.09 E-value=1.9e+02 Score=30.26 Aligned_cols=83 Identities=12% Similarity=0.048 Sum_probs=50.8
Q ss_pred HHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 154 HRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
+.++++.+++.||+++.+ ++....+ .++.+|+. +.+++... .+++.+. .+. ..|+|+|.+
T Consensus 76 ~~~~~~~~~~~~v~~v~~-~~g~p~~---~i~~lk~~-g~~v~~~v-----------~s~~~a~-~a~---~~GaD~Ivv 135 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTT-GAGNPGK---YIPRLKEN-GVKVIPVV-----------ASVALAK-RME---KAGADAVIA 135 (307)
T ss_pred HHHHHHHHHhCCCCEEEE-cCCCcHH---HHHHHHHc-CCEEEEEc-----------CCHHHHH-HHH---HcCCCEEEE
Confidence 467899999999999987 5555533 56677765 77777522 2244443 333 468888876
Q ss_pred CC---C-C--hhhHHHHHHHHHhhCCCCce
Q psy15811 234 NC---V-R--PSHVSTLVRCIKQSHPTVQT 257 (581)
Q Consensus 234 NC---~-~--p~~~~~~l~~l~~~~~~~p~ 257 (581)
.. . + ......+++.+.+. .++|+
T Consensus 136 ~g~eagGh~g~~~~~~ll~~v~~~-~~iPv 164 (307)
T TIGR03151 136 EGMESGGHIGELTTMALVPQVVDA-VSIPV 164 (307)
T ss_pred ECcccCCCCCCCcHHHHHHHHHHH-hCCCE
Confidence 44 2 2 12245777777764 44443
No 429
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=45.83 E-value=1.9e+02 Score=29.94 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCce
Q psy15811 406 LIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ 485 (581)
Q Consensus 406 ~~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~ 485 (581)
++..|..-++.|.++|||+| -||.-... +...+..+|+..+.|++ .+=.++++++++. ..+++
T Consensus 72 ~K~~~~~Ea~~L~eaGvDiI-DaT~r~rP-~~~~~~~iK~~~~~l~M-----------AD~stleEal~a~----~~Gad 134 (283)
T cd04727 72 VRIGHFVEAQILEALGVDMI-DESEVLTP-ADEEHHIDKHKFKVPFV-----------CGARNLGEALRRI----SEGAA 134 (283)
T ss_pred eehhHHHHHHHHHHcCCCEE-eccCCCCc-HHHHHHHHHHHcCCcEE-----------ccCCCHHHHHHHH----HCCCC
Q ss_pred EEEECCCCCccc-----------------------------h-------HHHHHHHhhCCCCeEEEeeCCC
Q psy15811 486 AIGVNCVRPSHV-----------------------------S-------TLVRCIKQSHPTVQTIVYPNKG 520 (581)
Q Consensus 486 ~iGiNC~~p~~~-----------------------------~-------~~l~~l~~~~~~~pl~~ypNag 520 (581)
.||.-=.+...- . .+|+++.+.. ++|++....+|
T Consensus 135 ~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGG 204 (283)
T cd04727 135 MIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGG 204 (283)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCC
No 430
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=45.56 E-value=2.9e+02 Score=26.69 Aligned_cols=158 Identities=9% Similarity=0.052 Sum_probs=82.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEe-cccCCH----HHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHH
Q psy15811 399 DSMTEADLIAWHRPNVEALVRAGVDYLAL-ETIPAE----KEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAV 473 (581)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~l~~~gvD~i~~-ET~p~~----~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~ 473 (581)
...+.++++......++.+...||--++. -+.+.. .....+++++++.+++.+++...+.+..........+...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (275)
T cd01292 26 EELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLL 105 (275)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCeeeEEeccCCCCccccchhHHHHHH
Confidence 45788999999999999999999855432 222211 3456777777764344444444333211100111222333
Q ss_pred HHHHhhCCCCceEEEECCC------CCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHH
Q psy15811 474 TSCLLANPDQIQAIGVNCV------RPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWL 547 (581)
Q Consensus 474 ~~l~~~~~~~~~~iGiNC~------~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~ 547 (581)
+.+.+....++.+++++.. .++.+.++++..+.. +.|+.+....+... . .......+ ...
T Consensus 106 ~~i~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~i~~H~~~~~~~--~-------~~~~~~~~---~~~ 171 (275)
T cd01292 106 ELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARKL--GLPVVIHAGELPDP--T-------RALEDLVA---LLR 171 (275)
T ss_pred HHHHHHHhcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHc--CCeEEEeeCCcccC--c-------cCHHHHHH---HHh
Confidence 3332211235667777652 345555666665554 57888877654221 0 00111111 111
Q ss_pred HcCCcEEeecCCCchHHHHHHHH
Q psy15811 548 EEGVNIIGGCCEVTSYEIQQMRI 570 (581)
Q Consensus 548 ~~G~~iiGGCCGt~P~hI~al~~ 570 (581)
..+..+++=|+..+++.++.+++
T Consensus 172 ~~~~~~~~H~~~~~~~~~~~~~~ 194 (275)
T cd01292 172 LGGRVVIGHVSHLDPELLELLKE 194 (275)
T ss_pred cCCCEEEECCccCCHHHHHHHHH
Confidence 12345566676667777777665
No 431
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=45.49 E-value=2e+02 Score=29.15 Aligned_cols=103 Identities=11% Similarity=0.109 Sum_probs=56.3
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCC----c-------CCCCCcHHHHHHHHHhhC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDT----H-------TSHGELISSAVTSCLLAN 480 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~----~-------l~~G~~~~~~~~~l~~~~ 480 (581)
+.++.+.+.|+|.+.+-|.- +.+...+.++++++..-.+.+|+.++.+. . -....++.+.++.+.
T Consensus 87 ~d~~~l~~~G~~~vvigs~~-~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~--- 162 (258)
T PRK01033 87 EQAKKIFSLGVEKVSINTAA-LEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYE--- 162 (258)
T ss_pred HHHHHHHHCCCCEEEEChHH-hcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHH---
Confidence 45666667899998876531 22233444455554323477888887541 1 123445677777763
Q ss_pred CCCceEEEECCCCCc-----cchHHHHHHHhhCCCCeEEEeeCC
Q psy15811 481 PDQIQAIGVNCVRPS-----HVSTLVRCIKQSHPTVQTIVYPNK 519 (581)
Q Consensus 481 ~~~~~~iGiNC~~p~-----~~~~~l~~l~~~~~~~pl~~ypNa 519 (581)
..++..|-++..+-+ .-..+++++++.. ++|+++--..
T Consensus 163 ~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~-~ipvIasGGv 205 (258)
T PRK01033 163 ALGAGEILLNSIDRDGTMKGYDLELLKSFRNAL-KIPLIALGGA 205 (258)
T ss_pred HcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhC-CCCEEEeCCC
Confidence 334445555542211 1345667777664 5787654433
No 432
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=45.43 E-value=2.5e+02 Score=26.82 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=48.1
Q ss_pred HHHHHHHHHHCCCcEEEE-----EccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCc
Q psy15811 154 HRPNVEALVRAGVDYLAL-----ETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQI 228 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~-----ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~ 228 (581)
+.+.++.+.++|+|.|-+ .+.+....-...++.+++..+.|+.+-+.+.+. .+.+..+. ..++
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~---------~~~~~~~~---~~g~ 81 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENP---------ERYIEAFA---KAGA 81 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCH---------HHHHHHHH---HcCC
Confidence 566889999999999977 333333211234444543324566555555421 33344433 3667
Q ss_pred eEEEeCCCChhhHHHHHHHHHhh
Q psy15811 229 QAIGVNCVRPSHVSTLVRCIKQS 251 (581)
Q Consensus 229 ~~vGvNC~~p~~~~~~l~~l~~~ 251 (581)
+++=|=....+.+...++.+++.
T Consensus 82 dgv~vh~~~~~~~~~~~~~~~~~ 104 (211)
T cd00429 82 DIITFHAEATDHLHRTIQLIKEL 104 (211)
T ss_pred CEEEECccchhhHHHHHHHHHHC
Confidence 77656554335566667766653
No 433
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=45.25 E-value=71 Score=33.39 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=6.6
Q ss_pred CCeEEEEEEE
Q psy15811 448 GQKAWLSFSC 457 (581)
Q Consensus 448 ~~pv~iSft~ 457 (581)
++|+++|+..
T Consensus 92 ~~pvI~Si~G 101 (310)
T PRK02506 92 NKPHFLSVVG 101 (310)
T ss_pred CCCEEEEEEe
Confidence 5777777644
No 434
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=45.22 E-value=86 Score=34.29 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 464 SHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 464 ~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
..|++++.+++.+. ..++..|-|+|
T Consensus 100 ~IGdDi~~v~~~~~---~~~~~vi~v~t 124 (427)
T cd01971 100 IIGDDVGAVVSEFQ---EGGAPIVYLET 124 (427)
T ss_pred HhhcCHHHHHHHhh---hcCCCEEEEEC
Confidence 34777887777662 22455677888
No 435
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=45.06 E-value=2.6e+02 Score=28.11 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=60.0
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCc--------------CCCCCcHHHHHHHHH
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTH--------------TSHGELISSAVTSCL 477 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~--------------l~~G~~~~~~~~~l~ 477 (581)
+.++.+...|+|.+++-|.- +.+...+-++.+++..-.+++|+-+++... ...+..+.+.++.+
T Consensus 87 ~d~~~~~~~Ga~~vivgt~~-~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l- 164 (254)
T TIGR00735 87 EDVDKLLRAGADKVSINTAA-VKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEV- 164 (254)
T ss_pred HHHHHHHHcCCCEEEEChhH-hhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHH-
Confidence 56667777899999886543 234445555555653356788998764321 12345566666766
Q ss_pred hhCCCCceEEEECCCCCc-----cchHHHHHHHhhCCCCeEEEeeC
Q psy15811 478 LANPDQIQAIGVNCVRPS-----HVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 478 ~~~~~~~~~iGiNC~~p~-----~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
...+++.|-+...+.. .-..++++++... ++|+++.-.
T Consensus 165 --~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~-~ipvia~GG 207 (254)
T TIGR00735 165 --EKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV-KIPVIASGG 207 (254)
T ss_pred --HHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC-CCCEEEeCC
Confidence 3445666666553221 2245677777765 577665443
No 436
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=44.86 E-value=3.5e+02 Score=27.40 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCC----ChhhHHHHHHHHHhhC
Q psy15811 177 EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV----RPSHVSTLVRCIKQSH 252 (581)
Q Consensus 177 ~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~ 252 (581)
+++++.+++.+++. +.. ++|++.+.++. +++..+..+......|++.|.+-=+ .|+.+..+++.+++..
T Consensus 113 ~~~~~~~i~~a~~~-G~~--v~~~~~~~~~~----~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 113 LERAVEAVEYAKSH-GLD--VEFSAEDATRT----DLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENV 185 (268)
T ss_pred HHHHHHHHHHHHHc-CCe--EEEeeecCCCC----CHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhC
Confidence 35566667777764 544 55777655432 3443333332222467887776554 4999999999999853
Q ss_pred CC--CceEEe
Q psy15811 253 PT--VQTIVY 260 (581)
Q Consensus 253 ~~--~p~~~~ 260 (581)
.+ +||.+.
T Consensus 186 ~~~~i~l~~H 195 (268)
T cd07940 186 PNIKVPISVH 195 (268)
T ss_pred CCCceeEEEE
Confidence 32 455443
No 437
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=44.86 E-value=96 Score=31.54 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=45.1
Q ss_pred HHHHHHHCCCcEEEEE-ccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 157 NVEALVRAGVDYLALE-TIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 157 q~~~l~~~gvD~l~~E-T~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
|++...+.|+|.+++- +.-+..++...++.+++. ++-+++-. .+.+++-. +. ..+++.||+|=
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~l-Gl~~lvev-----------h~~~E~~~-A~---~~gadiIgin~ 188 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSL-GLDVLVEV-----------HDEEELER-AL---KLGAPLIGINN 188 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHc-CCeEEEEe-----------CCHHHHHH-HH---HcCCCEEEECC
Confidence 7888889999998776 554667889899999886 76666522 22344432 22 46899999995
No 438
>PRK00208 thiG thiazole synthase; Reviewed
Probab=44.76 E-value=73 Score=32.25 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=45.9
Q ss_pred HHHHHHHCCCcEEEE--EccCCHHHH--HHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEE
Q psy15811 157 NVEALVRAGVDYLAL--ETIPAEKEA--LALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIG 232 (581)
Q Consensus 157 q~~~l~~~gvD~l~~--ET~~~~~E~--~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vG 232 (581)
.++.|.+.|+|++.- |.|.+-.-+ ...++.+++..+.||++ +|.. .+.+++...+ ..|+++|+
T Consensus 136 ~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIv------eaGI---~tpeda~~Am----elGAdgVl 202 (250)
T PRK00208 136 LAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIV------DAGI---GTPSDAAQAM----ELGADAVL 202 (250)
T ss_pred HHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEE------eCCC---CCHHHHHHHH----HcCCCEEE
Confidence 356777889999833 433321100 22255555545788886 3434 3355555444 37999999
Q ss_pred eCCC--C---hhhHHHHHHH
Q psy15811 233 VNCV--R---PSHVSTLVRC 247 (581)
Q Consensus 233 vNC~--~---p~~~~~~l~~ 247 (581)
+|-+ . |..|.+.++.
T Consensus 203 V~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 203 LNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred EChHhhCCCCHHHHHHHHHH
Confidence 9984 4 7776654443
No 439
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=44.69 E-value=1.9e+02 Score=29.52 Aligned_cols=143 Identities=18% Similarity=0.174 Sum_probs=71.6
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh-cC-CCeEEEEEEEcCCCcCCCC-----CcHHHHHHHHHhhCCCCc
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLRE-FP-GQKAWLSFSCKDDTHTSHG-----ELISSAVTSCLLANPDQI 484 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~-~~-~~pv~iSft~~~~~~l~~G-----~~~~~~~~~l~~~~~~~~ 484 (581)
..++.+.++|+|.++. . +.+++.+.+ +. ++|+++..+..+.-..... .++++++ ..++
T Consensus 47 ~~v~~v~~~g~dav~~--~------~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai-------~lga 111 (265)
T COG1830 47 NIVAKVAEAGADAVAM--T------PGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAI-------RLGA 111 (265)
T ss_pred HHHHHHHhcCCCEEEe--c------HhHHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHH-------hCCC
Confidence 4566677889999972 1 345555553 33 7999999977632221111 2344443 3366
Q ss_pred eEEEECC-CCCccchHHHHHHHhh-----CCCCeEE--EeeCCCCCccc---ccc-----------------cccCCcCH
Q psy15811 485 QAIGVNC-VRPSHVSTLVRCIKQS-----HPTVQTI--VYPNKGGVWDS---VHM-----------------KWLDTEDE 536 (581)
Q Consensus 485 ~~iGiNC-~~p~~~~~~l~~l~~~-----~~~~pl~--~ypNag~~~~~---~~~-----------------~~~~~~~~ 536 (581)
+++++-= .+.+.=.+.|+++.+. ....|++ .||-.....+. ..+ +-.+..++
T Consensus 112 dAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~ 191 (265)
T COG1830 112 DAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP 191 (265)
T ss_pred cEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh
Confidence 6666544 3333334445444332 1257755 46644322121 100 00123344
Q ss_pred HHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHH
Q psy15811 537 YSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRI 570 (581)
Q Consensus 537 ~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~ 570 (581)
+.|.+.+.-.- -++-+-||=-+-+++...++..
T Consensus 192 e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~~~ 224 (265)
T COG1830 192 ESFRRVVAACG-VPVVIAGGPKTETEREFLEMVT 224 (265)
T ss_pred HHHHHHHHhCC-CCEEEeCCCCCCChHHHHHHHH
Confidence 55555444333 4566667766545555555543
No 440
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=44.61 E-value=3.5e+02 Score=27.99 Aligned_cols=212 Identities=17% Similarity=0.184 Sum_probs=108.3
Q ss_pred HHHHHHHHhhCCCCceEEEeCCCChhhHHHHHHHHHhhCCCCceEEecCCC-ccccCCC-----chhhhccccCcccCCC
Q psy15811 214 SSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKG-VKLLDGS-----FTSQVSRHTIKDVDGH 287 (581)
Q Consensus 214 ~~~~~~~~~~~~~~~~~vGvNC~~p~~~~~~l~~l~~~~~~~p~~~~pnag-~~~~dG~-----~gt~L~~~~g~~~~g~ 287 (581)
.+.+..+.+ .+-..=-+||..-+.+..+|+...+ .+-|++++-..| .....|. +-..+...++.++.
T Consensus 7 ~~ll~~Ake---~~yAvpAfN~~nlE~~~AileaA~e--~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~-- 79 (286)
T COG0191 7 KELLDKAKE---NGYAVPAFNINNLETLQAILEAAEE--EKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVA-- 79 (286)
T ss_pred HHHHHHHHH---cCCceeeeeecCHHHHHHHHHHHHH--hCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEE--
Confidence 445555443 3334445899999999999998887 578999998887 5555541 23333333343321
Q ss_pred CcccccccC---CChHHHHHHHHHHHHHHHhhcCCcccccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy15811 288 PLWSSVYLT---TEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDY 364 (581)
Q Consensus 288 ~lws~~~~~---~~Pe~v~~vh~~yl~aiI~Tna~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~av~lA~~A~~~~ 364 (581)
+-+ .+++.+.+. ++ ..|.+...|+|- .+-++...+.+..|+.|+..
T Consensus 80 ------lHlDHg~~~~~~~~a----i~---------~GFsSvMiDgS~--------~~~eENi~~tkevv~~ah~~---- 128 (286)
T COG0191 80 ------LHLDHGASFEDCKQA----IR---------AGFSSVMIDGSH--------LPFEENIAITKEVVEFAHAY---- 128 (286)
T ss_pred ------EECCCCCCHHHHHHH----Hh---------cCCceEEecCCc--------CCHHHHHHHHHHHHHHHHHc----
Confidence 011 233433222 11 234455555554 22344445555555555443
Q ss_pred hhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec--ccCC-H--HHH---
Q psy15811 365 LALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE--TIPA-E--KEA--- 436 (581)
Q Consensus 365 ~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~E--T~p~-~--~Ea--- 436 (581)
.+.|=+-+|..|. ..+|. .-|.+ ++.+..=.+..+.....|+|.|.+- |..- . .+-
T Consensus 129 --------gvsVEaElG~~GG-~Edg~---~~~~~----~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~ 192 (286)
T COG0191 129 --------GVSVEAELGTLGG-EEDGV---VLYTD----PADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLD 192 (286)
T ss_pred --------CCcEEEEeccccC-ccCCc---ccccc----hhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCC
Confidence 3667666777662 22221 11111 1111111222333334579988643 2211 0 011
Q ss_pred HHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 437 LALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 437 ~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
-.+++.+++..++|.++|= .+|.+.++.-+++ ..++.=|.||-
T Consensus 193 ~~~L~~i~~~~~~PlVlHG--------gSGip~~eI~~aI----~~GV~KvNi~T 235 (286)
T COG0191 193 FDRLKEIQEAVSLPLVLHG--------GSGIPDEEIREAI----KLGVAKVNIDT 235 (286)
T ss_pred HHHHHHHHHHhCCCEEEeC--------CCCCCHHHHHHHH----HhCceEEeeCc
Confidence 1234455555678855443 3588888888877 23555555665
No 441
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=44.55 E-value=1.1e+02 Score=34.02 Aligned_cols=102 Identities=8% Similarity=-0.005 Sum_probs=59.7
Q ss_pred HHHHHHHHHHCCCcEE-----EEE-ccC-CHHHHHHHHHHHHh---cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhh
Q psy15811 154 HRPNVEALVRAGVDYL-----ALE-TIP-AEKEALALVKLLRE---FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA 223 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l-----~~E-T~~-~~~E~~aa~~a~~~---~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~ 223 (581)
|.+++..+..+|+|+| +.. .+. -.+-++++.+++++ .++.+.+-.|-+ ++.+..+..+++.-.
T Consensus 185 ~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-------Ta~~~~em~~ra~~a 257 (475)
T CHL00040 185 YGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNA-------TAGTCEEMYKRAVFA 257 (475)
T ss_pred HHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeecc-------CCCCHHHHHHHHHHH
Confidence 4556667778999997 322 232 33445555666653 245555544432 333456666655444
Q ss_pred CCCCceEEEeCCC--ChhhHHHHHHHHHhhCCCCceEEecCCC
Q psy15811 224 NPDQIQAIGVNCV--RPSHVSTLVRCIKQSHPTVQTIVYPNKG 264 (581)
Q Consensus 224 ~~~~~~~vGvNC~--~p~~~~~~l~~l~~~~~~~p~~~~pnag 264 (581)
...|..++.+|-. |... ...|+...+. .++||...|+--
T Consensus 258 ~e~G~~~~mv~~~~~G~~a-l~~l~~~~~~-~~l~IhaHrA~~ 298 (475)
T CHL00040 258 RELGVPIVMHDYLTGGFTA-NTSLAHYCRD-NGLLLHIHRAMH 298 (475)
T ss_pred HHcCCceEEEeccccccch-HHHHHHHhhh-cCceEEeccccc
Confidence 4578888888884 4443 3444444333 678999888753
No 442
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=44.45 E-value=60 Score=33.40 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=13.8
Q ss_pred CeEEEeecCCcCCCCCC
Q psy15811 117 HIETAASIGPYGTVLRD 133 (581)
Q Consensus 117 ~~~VagsiGP~g~~~~~ 133 (581)
+-.|..|||...+|+++
T Consensus 113 ~~VVGLsIgTRPDClpd 129 (312)
T COG1242 113 AGVVGLSIGTRPDCLPD 129 (312)
T ss_pred CCeeEEeecCCCCCCcH
Confidence 44699999999998763
No 443
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=44.38 E-value=4.4e+02 Score=28.47 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHHHHH---CCCcEEE--------E-Ec-cCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCC
Q psy15811 145 MTEADLIAWHRPNVEALVR---AGVDYLA--------L-ET-IPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGE 211 (581)
Q Consensus 145 ~~~~~~~~~~~~q~~~l~~---~gvD~l~--------~-ET-~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~ 211 (581)
.+..++.+.+.+-++.+.+ .|+++++ + +| +++..++.+.++.+ +-|+.+ ++ +-|+...|+
T Consensus 147 ~~~~~a~~rl~esL~eI~~~~~~~v~~~iE~Kp~Ep~~y~t~~~~~~~~l~l~~~l----g~~~~v--~l-D~GH~~~~E 219 (378)
T TIGR02635 147 DDFRSRKDRLEESLAEVYEHLGADMRLLIEYKFFEPAFYHTDIPDWGTAYALSEKL----GERALV--LV-DTGHHAQGT 219 (378)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCceeeecCCcHHHHHHHHHhh----CCCceE--Ee-ecCccCCCC
Confidence 4555555555555555544 3777665 2 34 55555655544433 445444 33 455566899
Q ss_pred CHHHHHHHHHhhCCCCceEEEeCC----------C--ChhhHHHHHHHHHhh
Q psy15811 212 LISSAVTSCLLANPDQIQAIGVNC----------V--RPSHVSTLVRCIKQS 251 (581)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~vGvNC----------~--~p~~~~~~l~~l~~~ 251 (581)
++++.+..+.. ......+=+|= + .|..+..+++++.+.
T Consensus 220 nia~~~a~l~~--~~kL~hiH~nd~~~~Ddd~~vG~~d~~e~~~il~el~~~ 269 (378)
T TIGR02635 220 NIEFIVATLLD--EKKLGGFHFNSRKYADDDLTVGAINPYELFLIFKEIVRA 269 (378)
T ss_pred CHHHHHHHHhh--CCceeEEEecCCCcccCCCceecCCHHHHHHHHHHHHhc
Confidence 99996555442 22333344442 1 255677777777753
No 444
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=44.28 E-value=3.6e+02 Score=27.45 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHhcCCCeEEEEEEEcCCCc
Q psy15811 409 WHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLREFPGQKAWLSFSCKDDTH 462 (581)
Q Consensus 409 ~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~ 462 (581)
...+.++.|.+.++|+|.+-..|. ......++..+++..++++++++||++.++
T Consensus 16 ~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~ 72 (272)
T TIGR00676 16 NLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATR 72 (272)
T ss_pred HHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCH
Confidence 344577888889999999988876 556667777777557999999999987543
No 445
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=44.01 E-value=44 Score=34.78 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHHHHHHHHHCCCcEE---EEEcc---------C---CHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHH
Q psy15811 154 HRPNVEALVRAGVDYL---ALETI---------P---AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVT 218 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l---~~ET~---------~---~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~ 218 (581)
.+++++.|.++|+|.+ -+||+ + +.++-..+++.+++. ++++..+|-+. .|++.++.+.
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~-Gi~~~s~~iiG------~~Et~ed~~~ 178 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL-GIPTTATMMFG------HVENPEHRVE 178 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc-CCCceeeEEec------CCCCHHHHHH
Confidence 3678889999999966 45665 2 334445555666654 66666555443 3466666555
Q ss_pred HH
Q psy15811 219 SC 220 (581)
Q Consensus 219 ~~ 220 (581)
.+
T Consensus 179 ~l 180 (309)
T TIGR00423 179 HL 180 (309)
T ss_pred HH
Confidence 44
No 446
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=43.90 E-value=2.2e+02 Score=28.58 Aligned_cols=95 Identities=11% Similarity=0.005 Sum_probs=56.4
Q ss_pred HHHHHHHHCCCcEEEEEcc--CCHHHHHHHHHHHHhcCCCcEEEEEEEcCCC---------cCCCCCCHHHHHHHHHhhC
Q psy15811 156 PNVEALVRAGVDYLALETI--PAEKEALALVKLLREFPGQKAWLSFSCKDDT---------HTSHGELISSAVTSCLLAN 224 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~--~~~~E~~aa~~a~~~~~~~pv~isft~~~~g---------~l~~G~~~~~~~~~~~~~~ 224 (581)
++++.+++.|+|-+++=|. .+.+-++ ++++++++. +++|.-+..+| ...++.++.+++..+.+
T Consensus 87 e~~~~~l~~Ga~~vvigT~a~~~p~~~~---~~~~~~g~~-ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~-- 160 (243)
T TIGR01919 87 SSLRAALTGGRARVNGGTAALENPWWAA---AVIRYGGDI-VAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDS-- 160 (243)
T ss_pred HHHHHHHHcCCCEEEECchhhCCHHHHH---HHHHHcccc-EEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHh--
Confidence 3466677899999988764 3443333 344455444 77877664223 23367788888887753
Q ss_pred CCCceEEEeCCC-------ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 225 PDQIQAIGVNCV-------RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 225 ~~~~~~vGvNC~-------~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
.++..|-++.. ||+ .++++.+... ++.|+++-
T Consensus 161 -~g~~~ii~tdI~~dGt~~G~d--~~l~~~l~~~-~~~pvias 199 (243)
T TIGR01919 161 -GGCSRVVVTDSKKDGLSGGPN--ELLLEVVAAR-TDAIVAAS 199 (243)
T ss_pred -CCCCEEEEEecCCcccCCCcC--HHHHHHHHhh-CCCCEEEE
Confidence 55555555542 454 2566777664 55565543
No 447
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=43.86 E-value=2.8e+02 Score=26.74 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCcEEEE-----EccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCc
Q psy15811 154 HRPNVEALVRAGVDYLAL-----ETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQI 228 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~-----ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~ 228 (581)
+.++++.+.++|+|.|=+ ...++.......++.+++....|+-+-+.+. ...+.+..+. ..++
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~---------d~~~~i~~~~---~~g~ 85 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE---------NPDRYVPDFA---KAGA 85 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC---------CHHHHHHHHH---HcCC
Confidence 667899999999999988 5544422223344455443223443333332 1233333333 3567
Q ss_pred eEEEeCCCChhhHHHHHHHHHhh
Q psy15811 229 QAIGVNCVRPSHVSTLVRCIKQS 251 (581)
Q Consensus 229 ~~vGvNC~~p~~~~~~l~~l~~~ 251 (581)
+++-|-...++.+...++.++..
T Consensus 86 d~v~vh~~~~~~~~~~~~~~~~~ 108 (220)
T PRK05581 86 DIITFHVEASEHIHRLLQLIKSA 108 (220)
T ss_pred CEEEEeeccchhHHHHHHHHHHc
Confidence 77666665445666777777663
No 448
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=43.80 E-value=1.9e+02 Score=27.67 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=45.2
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
++++..++.|+|++..-. .. ..++++.++. +.|+++ .-.+++++..++ ..|++.+++-=
T Consensus 67 ~~~~~a~~~Ga~~i~~p~--~~---~~~~~~~~~~-~~~~i~-----------gv~t~~e~~~A~----~~Gad~i~~~p 125 (190)
T cd00452 67 EQADAAIAAGAQFIVSPG--LD---PEVVKAANRA-GIPLLP-----------GVATPTEIMQAL----ELGADIVKLFP 125 (190)
T ss_pred HHHHHHHHcCCCEEEcCC--CC---HHHHHHHHHc-CCcEEC-----------CcCCHHHHHHHH----HCCCCEEEEcC
Confidence 467778889999997432 22 2355555554 677764 223677776554 47899999853
Q ss_pred CChhhHHHHHHHHHh
Q psy15811 236 VRPSHVSTLVRCIKQ 250 (581)
Q Consensus 236 ~~p~~~~~~l~~l~~ 250 (581)
+.+. -.+.++.++.
T Consensus 126 ~~~~-g~~~~~~l~~ 139 (190)
T cd00452 126 AEAV-GPAYIKALKG 139 (190)
T ss_pred Cccc-CHHHHHHHHh
Confidence 3332 3456666664
No 449
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=43.75 E-value=66 Score=35.13 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=41.3
Q ss_pred cccCCChHHHHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccccccccc
Q psy15811 35 VYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLL 114 (581)
Q Consensus 35 ~~~l~~Pe~v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~ 114 (581)
.++|.+|+-.+-+++= -+.|||+.+| |+ +..+.++|++.+.+++ . .
T Consensus 71 ~lDLk~~eGr~~l~~L--v~~ADVvien-~r--pg~~~rlGl~~e~L~~--------------~------------n--- 116 (416)
T PRK05398 71 TLDTKTPEGKEVLEKL--IREADVLVEN-FG--PGALDRMGFTWERIQE--------------I------------N--- 116 (416)
T ss_pred EeeCCCHHHHHHHHHH--HhcCCEEEEC-CC--cchHHHcCCCHHHHHh--------------h------------C---
Confidence 4568888865555442 3569999999 76 5567899998655432 1 1
Q ss_pred CCCeEEEeecCCcCC
Q psy15811 115 TGHIETAASIGPYGT 129 (581)
Q Consensus 115 ~~~~~VagsiGP~g~ 129 (581)
+-+|..||-.||.
T Consensus 117 --P~LI~~sisg~G~ 129 (416)
T PRK05398 117 --PRLIVASIKGFGP 129 (416)
T ss_pred --cCEEEEEEeeCCC
Confidence 6688889999886
No 450
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=43.65 E-value=3.9e+02 Score=27.68 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccc--CC---------HHHHHHHHHHHHh---cCCCeEEEEEEEcCCCcCCCC
Q psy15811 401 MTEADLIAWHRPNVEALVRAGVDYLALETI--PA---------EKEALALVKLLRE---FPGQKAWLSFSCKDDTHTSHG 466 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~--p~---------~~Ea~a~~~~~~~---~~~~pv~iSft~~~~~~l~~G 466 (581)
.+.++++..-+..++.+...|| ..+|.. |. ..+.+++++++++ ..++.+-+-+++.... ..
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv--~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~~---~~ 139 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGV--VYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRHK---QP 139 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC--EEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCCC---CH
Confidence 5788899999999998999999 466743 22 1223344444442 2456554444443211 12
Q ss_pred CcHHHHHHHHHhhCCCCceEEEECCCC----CccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHH
Q psy15811 467 ELISSAVTSCLLANPDQIQAIGVNCVR----PSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHY 542 (581)
Q Consensus 467 ~~~~~~~~~l~~~~~~~~~~iGiNC~~----p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~ 542 (581)
+.+.+.++.+.......+.++|+.+.. ++.+..+++..+.. +.|+ .-.+|+..+ +....
T Consensus 140 ~~~~~~~~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~--g~~i--~~Ha~E~~~-----------~~~~~-- 202 (324)
T TIGR01430 140 EAAEETLELAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIAREL--GLHL--TVHAGELGG-----------PESVR-- 202 (324)
T ss_pred HHHHHHHHHHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHC--CCCe--EEecCCCCC-----------hHHHH--
Confidence 334444444422222235555555421 22233333333332 3453 333432210 11111
Q ss_pred HHHHHHcCCcEEeecCCC--chHHHHHHHHH
Q psy15811 543 VPQWLEEGVNIIGGCCEV--TSYEIQQMRIM 571 (581)
Q Consensus 543 ~~~w~~~G~~iiGGCCGt--~P~hI~al~~~ 571 (581)
......|+..||-|+.. +|+.|+.|++.
T Consensus 203 -~~~~~~g~~ri~Hg~~l~~~~~~i~~l~~~ 232 (324)
T TIGR01430 203 -EALDDLGATRIGHGVRALEDPELLKRLAQE 232 (324)
T ss_pred -HHHHHcCchhcchhhhhccCHHHHHHHHHc
Confidence 12225687788888887 67778777653
No 451
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=43.46 E-value=3.8e+02 Score=28.28 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHh-cCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCC
Q psy15811 406 LIAWHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANP 481 (581)
Q Consensus 406 ~~~~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~-~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~ 481 (581)
....-+..++...+.|+.+-+= +... -.|.......+|+ .++.|++.++-+..... .+-+.+..+++.+ .
T Consensus 68 ~~~in~~La~~a~~~g~~~~~G-s~~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~-~~~~~~~~~i~~i----~ 141 (333)
T TIGR02151 68 AGKINRNLARAARELGIPMGVG-SQRAALKDPETADTFEVVREEAPNGPLIANIGAPQLVE-GGPEEAQEAIDMI----E 141 (333)
T ss_pred HHHHHHHHHHHHHHcCCCeEEc-CchhhccChhhHhHHHHHHHhCCCCcEEeecCchhhcc-ccHHHHHHHHHHh----c
Confidence 3455567777777888766532 2221 1223333466665 47899999986643221 0112233333333 4
Q ss_pred CCceEEEECCC----CCc---cch---HHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCC
Q psy15811 482 DQIQAIGVNCV----RPS---HVS---TLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGV 551 (581)
Q Consensus 482 ~~~~~iGiNC~----~p~---~~~---~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~ 551 (581)
+....|++||. .|+ ... ..|+.++... ++|+++.-+... . ..+.++.+.+.|+
T Consensus 142 adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g----~------------~~~~a~~L~~aGv 204 (333)
T TIGR02151 142 ADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQL-SVPVIVKEVGFG----I------------SKEVAKLLADAGV 204 (333)
T ss_pred CCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCCC----C------------CHHHHHHHHHcCC
Confidence 55677888873 222 233 4566666665 699999855310 0 1345566778886
Q ss_pred cE--EeecCCCc
Q psy15811 552 NI--IGGCCEVT 561 (581)
Q Consensus 552 ~i--iGGCCGt~ 561 (581)
.. |+|-.||+
T Consensus 205 d~I~Vsg~gGt~ 216 (333)
T TIGR02151 205 SAIDVAGAGGTS 216 (333)
T ss_pred CEEEECCCCCCc
Confidence 55 56666665
No 452
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=43.40 E-value=1.2e+02 Score=33.03 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCcEE-----EEE--ccCCHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHH
Q psy15811 152 AWHRPNVEALVRAGVDYL-----ALE--TIPAEKEALALVKLLREF---PGQKAWLSFSCKDDTHTSHGELISSAVTSCL 221 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l-----~~E--T~~~~~E~~aa~~a~~~~---~~~pv~isft~~~~g~l~~G~~~~~~~~~~~ 221 (581)
+.|.+++..+..+|+|+| +.. -.|-.+-++++.+++++. ++.+.+-++.+ +|.+..+..+++.
T Consensus 148 ~~~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-------T~~~~~em~~ra~ 220 (414)
T cd08206 148 KEYARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNI-------TADTPEEMIKRAE 220 (414)
T ss_pred HHHHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEecc-------CCCcHHHHHHHHH
Q ss_pred hhCCCCceEEEeCCC-ChhhHHHHHHHHHhhCCCCceEEecC
Q psy15811 222 LANPDQIQAIGVNCV-RPSHVSTLVRCIKQSHPTVQTIVYPN 262 (581)
Q Consensus 222 ~~~~~~~~~vGvNC~-~p~~~~~~l~~l~~~~~~~p~~~~pn 262 (581)
-....|+.++.+|.. .--.....|+..... .++||...|+
T Consensus 221 ~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~-~~l~ih~HrA 261 (414)
T cd08206 221 FAKELGSVIVMVDGVTAGWTAIQSARRWCPD-NGLALHAHRA 261 (414)
T ss_pred HHHHhCCcEEEEeeecccHHHHHHHHHhccc-cCeEEEEccc
No 453
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=43.37 E-value=1.3e+02 Score=29.74 Aligned_cols=142 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHH-hcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEEC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLR-EFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 490 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~-~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiN 490 (581)
..++...+. +|.|=+-|.=...|..-+++.+| .+++.+++.-+-+-|.|.+.- .+ ....+++.+-|-
T Consensus 20 ~~a~~v~~~-~diiEvGTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~---------~m--a~~aGAd~~tV~ 87 (217)
T COG0269 20 EIAEEVADY-VDIIEVGTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEA---------RM--AFEAGADWVTVL 87 (217)
T ss_pred HHHHHhhhc-ceEEEeCcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHH---------HH--HHHcCCCEEEEE
Q ss_pred C-CCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccC------------------CcCH-HHHHHHHHHHHHcC
Q psy15811 491 C-VRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLD------------------TEDE-YSILHYVPQWLEEG 550 (581)
Q Consensus 491 C-~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~------------------~~~~-~~~~~~~~~w~~~G 550 (581)
| .+.+.+..+++..+..+ ..-.+-.-|...+.+.. .|.. ..++ ....+.+++..+.|
T Consensus 88 g~A~~~TI~~~i~~A~~~~-~~v~iDl~~~~~~~~~~--~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g 164 (217)
T COG0269 88 GAADDATIKKAIKVAKEYG-KEVQIDLIGVWDPEQRA--KWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLG 164 (217)
T ss_pred ecCCHHHHHHHHHHHHHcC-CeEEEEeecCCCHHHHH--HHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccC
Q ss_pred CcE-EeecCCCchHHHHHHHH
Q psy15811 551 VNI-IGGCCEVTSYEIQQMRI 570 (581)
Q Consensus 551 ~~i-iGGCCGt~P~hI~al~~ 570 (581)
+++ |.| |.+|+.|..+..
T Consensus 165 ~~vAVaG--GI~~~~i~~~~~ 183 (217)
T COG0269 165 AKVAVAG--GITPEDIPLFKG 183 (217)
T ss_pred ceEEEec--CCCHHHHHHHhc
No 454
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=43.14 E-value=4e+02 Score=27.57 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccc--CC---------HHHHHHHHHHHHh---cCCCeEEEEEEEcCCCcCCCC
Q psy15811 401 MTEADLIAWHRPNVEALVRAGVDYLALETI--PA---------EKEALALVKLLRE---FPGQKAWLSFSCKDDTHTSHG 466 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~--p~---------~~Ea~a~~~~~~~---~~~~pv~iSft~~~~~~l~~G 466 (581)
.+.++++..-+..++.+.+.||= .+|.. |. ....+++++++.+ ..++.+.+.++..... ..
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt--~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~---~~ 140 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVV--YAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHL---SP 140 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCE--EEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCC---CH
Confidence 57899999999999999999984 45532 21 2234444444442 2467766666543211 11
Q ss_pred CcHHHHHHHHHhhCCCCceEEEECCCC----CccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHH
Q psy15811 467 ELISSAVTSCLLANPDQIQAIGVNCVR----PSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHY 542 (581)
Q Consensus 467 ~~~~~~~~~l~~~~~~~~~~iGiNC~~----p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~ 542 (581)
+.+.+.++.+.......+.++++.|.. ++.+..+++..+.. +.|+.+. +++.. .+...
T Consensus 141 ~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~--g~~v~~H--~~E~~-----------~~~~~--- 202 (325)
T cd01320 141 ESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREA--GLRLTAH--AGEAG-----------GPESV--- 202 (325)
T ss_pred HHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHC--CCceEEe--CCCCC-----------CHHHH---
Confidence 234444444422223456777887732 22334444444443 3565444 33210 01111
Q ss_pred HHHHHH-cCCcEEeecCCC--chHHHHHHHH
Q psy15811 543 VPQWLE-EGVNIIGGCCEV--TSYEIQQMRI 570 (581)
Q Consensus 543 ~~~w~~-~G~~iiGGCCGt--~P~hI~al~~ 570 (581)
.+.++ .|+.-||-|+.. .|+.|+.|++
T Consensus 203 -~~a~~~~g~~~i~H~~~l~~~~~~~~~l~~ 232 (325)
T cd01320 203 -RDALDLLGAERIGHGIRAIEDPELVKRLAE 232 (325)
T ss_pred -HHHHHHcCCcccchhhccCccHHHHHHHHH
Confidence 12222 566667777777 3556666654
No 455
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=42.95 E-value=1.2e+02 Score=34.63 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc----CCCeEEEEEEEc
Q psy15811 409 WHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREF----PGQKAWLSFSCK 458 (581)
Q Consensus 409 ~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~----~~~pv~iSft~~ 458 (581)
.--+|+..|.++|+|++-+ |+|+..|++++-...++. ..+|.+.-+.|.
T Consensus 42 atv~Qi~~l~~aGceiVRv-tv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~ 94 (611)
T PRK02048 42 ACVAQAKRIIDAGGEYVRL-TTQGVREAENLMNINIGLRSQGYMVPLVADVHFN 94 (611)
T ss_pred HHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCC
Confidence 3447888999999999875 779998888776666552 368877665554
No 456
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=42.92 E-value=1.9e+02 Score=27.38 Aligned_cols=93 Identities=13% Similarity=-0.005 Sum_probs=49.1
Q ss_pred HHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEE----cCCCcCCCCCcHHHHHHHHHh---------h
Q psy15811 413 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSC----KDDTHTSHGELISSAVTSCLL---------A 479 (581)
Q Consensus 413 ~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~----~~~~~l~~G~~~~~~~~~l~~---------~ 479 (581)
.++.+.+++=-+|++----...++...+..+.+..++||+.+..- .+.|...+.-.+.++...+.. .
T Consensus 20 aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g~g 99 (162)
T TIGR00315 20 VAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDGEG 99 (162)
T ss_pred HHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccCCC
Confidence 344455566566766643332344433333333369999988842 234444444445455444321 1
Q ss_pred CCCCceEEEECCCCCccchHHHHHHH
Q psy15811 480 NPDQIQAIGVNCVRPSHVSTLVRCIK 505 (581)
Q Consensus 480 ~~~~~~~iGiNC~~p~~~~~~l~~l~ 505 (581)
...-+..+|+||---+.+...||..+
T Consensus 100 ~~DlvlfvG~~~y~~~~~ls~lk~f~ 125 (162)
T TIGR00315 100 NYDLVLFLGIIYYYLSQMLSSLKHFS 125 (162)
T ss_pred CcCEEEEeCCcchHHHHHHHHHHhhc
Confidence 22446789999944444555656554
No 457
>PRK15108 biotin synthase; Provisional
Probab=42.85 E-value=4.4e+02 Score=27.96 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=12.7
Q ss_pred HHHHHHHHCCCcEEE--EEc
Q psy15811 156 PNVEALVRAGVDYLA--LET 173 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~--~ET 173 (581)
++++.|.++|+|.+- +||
T Consensus 137 e~l~~LkeAGld~~n~~leT 156 (345)
T PRK15108 137 SQAQRLANAGLDYYNHNLDT 156 (345)
T ss_pred HHHHHHHHcCCCEEeecccc
Confidence 456778899999753 355
No 458
>PRK08444 hypothetical protein; Provisional
Probab=42.84 E-value=47 Score=35.45 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCCcEE---EEEcc---------C---CHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHH
Q psy15811 154 HRPNVEALVRAGVDYL---ALETI---------P---AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVT 218 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l---~~ET~---------~---~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~ 218 (581)
.+++++.|.++|+|-+ -.|++ | ..++-..+.+.+++. ++|+-..|-+- +|+++++-+.
T Consensus 150 ~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~-Gi~~~sg~l~G------~gEt~edrv~ 222 (353)
T PRK08444 150 YEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKK-GKMSNATMLFG------HIENREHRID 222 (353)
T ss_pred HHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHc-CCCccceeEEe------cCCCHHHHHH
Confidence 4688889999999876 35665 2 335556666666665 77766555443 6788888777
Q ss_pred HHHhhCCCCceEEEeCCC
Q psy15811 219 SCLLANPDQIQAIGVNCV 236 (581)
Q Consensus 219 ~~~~~~~~~~~~vGvNC~ 236 (581)
.+......+.+.+|+|.-
T Consensus 223 hl~~Lr~Lq~~t~gf~~f 240 (353)
T PRK08444 223 HMLRLRDLQDKTGGFNAF 240 (353)
T ss_pred HHHHHHHhccccCCceEE
Confidence 665544455555555553
No 459
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=42.82 E-value=77 Score=32.06 Aligned_cols=50 Identities=10% Similarity=0.009 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHHH-hCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEE
Q psy15811 400 SMTEADLIAWHRPNVEALV-RAGVDYLALETIPAEKEALALVKLLREFPGQKAW 452 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~-~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~ 452 (581)
.-+.+++.+...+.++.|. +.|||+|++-....- -.+++.+++..++|++
T Consensus 39 ~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~---a~~~~~l~~~~~iPii 89 (251)
T TIGR00067 39 EKSPEFILEYVLELLTFLKERHNIKLLVVACNTAS---ALALEDLQRNFDFPVV 89 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH---HHHHHHHHHHCCCCEE
Confidence 4689999999999999999 999999988754421 1345666654567754
No 460
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=42.80 E-value=3.5e+02 Score=28.96 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEE--------EecccCC--------------HHHHH---HHHHHHHhcCCC-eEEEEEE
Q psy15811 403 EADLIAWHRPNVEALVRAGVDYL--------ALETIPA--------------EKEAL---ALVKLLREFPGQ-KAWLSFS 456 (581)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~gvD~i--------~~ET~p~--------------~~Ea~---a~~~~~~~~~~~-pv~iSft 456 (581)
.+++.+.|...++...++|.|.| ++..|=+ -.-++ .+++++|+..+- .+.+-++
T Consensus 154 I~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis 233 (362)
T PRK10605 154 IPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRIS 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 36677788888888899999998 3344422 12233 444455543232 3444443
Q ss_pred EcCC-CcCCCCCcHHH-HHHHHHhhCCCCceEEEECCCC----CccchHHHHHHHhhCCCCeEEE
Q psy15811 457 CKDD-THTSHGELISS-AVTSCLLANPDQIQAIGVNCVR----PSHVSTLVRCIKQSHPTVQTIV 515 (581)
Q Consensus 457 ~~~~-~~l~~G~~~~~-~~~~l~~~~~~~~~~iGiNC~~----p~~~~~~l~~l~~~~~~~pl~~ 515 (581)
..+. +....|.++++ ++..+..+...+++.|-|.+.+ +.......+.++... ++|+++
T Consensus 234 ~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~-~~pv~~ 297 (362)
T PRK10605 234 PLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARF-HGVIIG 297 (362)
T ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHC-CCCEEE
Confidence 2221 12345777777 5555544445567877777621 112233445666654 466554
No 461
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=42.75 E-value=68 Score=34.92 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=58.5
Q ss_pred cCceEEEe------ccHHHHHhhCcCCC------CC-CCC------Cc--------cccccCCChHHHHHHHHHHHHhcc
Q psy15811 4 ICKVKLLD------GSFTSQVSRHTIKD------VD-GHP------LW--------SSVYLTTEPEACVETHRDFIRAGA 56 (581)
Q Consensus 4 ~~~ili~D------GamgT~L~~~~g~~------~~-~~~------~w--------s~~~~l~~Pe~v~~iH~~yl~AGA 56 (581)
.+.+.|+| |.+.|.+....|.+ .. +++ .| |=.++|..|+-.+.+++ |-+.|
T Consensus 12 L~GirVldls~~~aGP~a~~lLAdlGAeVIKVE~p~~GD~~R~~~~~~~~~NrgKrsi~LDLk~~~Gr~~l~~--Li~~A 89 (405)
T PRK03525 12 LAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLK--LMETT 89 (405)
T ss_pred CCCCEEEEecchhHHHHHHHHHHHcCCcEEEECCCCCCCccccccchhhhccCCCeeEEEeCCCHHHHHHHHH--HHHhC
Confidence 56788888 56777777665754 11 111 11 22456788886555444 23459
Q ss_pred ccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCC
Q psy15811 57 DIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTV 130 (581)
Q Consensus 57 diI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~ 130 (581)
||+.+| |+ +..+.++|++.+.+++ . . +-+|..||.+||..
T Consensus 90 DVvien-~r--pg~~~rlGl~~e~L~~--------------~------------n-----P~LIy~sisgfG~~ 129 (405)
T PRK03525 90 DIFIEA-SK--GPAFARRGITDEVLWE--------------H------------N-----PKLVIAHLSGFGQY 129 (405)
T ss_pred CEEEEC-CC--ccHHHHcCCCHHHHHH--------------h------------C-----CCeEEEEeeECCCC
Confidence 999988 66 5567889998665532 1 1 67899999999973
No 462
>KOG2949|consensus
Probab=42.68 E-value=2.2e+02 Score=28.49 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcC------CCcCCCCCCHHHHHHH---HHh
Q psy15811 152 AWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKD------DTHTSHGELISSAVTS---CLL 222 (581)
Q Consensus 152 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~------~g~l~~G~~~~~~~~~---~~~ 222 (581)
+.-+.-++.+.++|+|.+=+|-=+. -...+++.+-+ .++||+--+-+.+ +|+-+.|.++.++++- +.+
T Consensus 117 da~knAv~vmk~~g~~~vK~EgGs~--~~~~~~~~l~e-rgipV~gHvGLTPQ~v~~lGGyk~QGr~~~~a~~l~EtAmq 193 (306)
T KOG2949|consen 117 DAVKNAVRVMKEGGMDAVKLEGGSN--SRITAAKRLVE-RGIPVMGHVGLTPQAVSVLGGYKPQGRNIASAVKLVETAMQ 193 (306)
T ss_pred HHHHHHHHHHHhcCCceEEEccCcH--HHHHHHHHHHH-cCCceeeeccCChhhhhhccCcCccchhHHHHHHHHHHHHH
Confidence 4456678888889999999997552 22333333334 3899987654442 6777788888776643 233
Q ss_pred hCCCCceEEEeCCCCh
Q psy15811 223 ANPDQIQAIGVNCVRP 238 (581)
Q Consensus 223 ~~~~~~~~vGvNC~~p 238 (581)
++..|++.+-+.|.-|
T Consensus 194 Lqk~Gc~svvlECvP~ 209 (306)
T KOG2949|consen 194 LQKAGCFSVVLECVPP 209 (306)
T ss_pred HHhcccceEeeecCCh
Confidence 5578999999999844
No 463
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=42.65 E-value=1.2e+02 Score=33.17 Aligned_cols=102 Identities=9% Similarity=0.197 Sum_probs=53.6
Q ss_pred CcHHHHHHHHHhhCCCCceEEEECCC---CCccchHHHHHHHhh---CCCCeEEEeeCCCCCcccccccccCCcCHHHHH
Q psy15811 467 ELISSAVTSCLLANPDQIQAIGVNCV---RPSHVSTLVRCIKQS---HPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSIL 540 (581)
Q Consensus 467 ~~~~~~~~~l~~~~~~~~~~iGiNC~---~p~~~~~~l~~l~~~---~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~ 540 (581)
+.+.+++..+.+...+.+.+|--.|+ --+++..+++++... ..+.|++.....|..-+.. .+| ...+.
T Consensus 67 ~~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~-~G~-----~~a~~ 140 (428)
T cd01965 67 DNLIEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHE-TGY-----DNAVK 140 (428)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHH-HHH-----HHHHH
Confidence 34666666664444455566666663 224566666776642 1146766655544221000 111 11222
Q ss_pred HHHHHHHH-------cCCcEEeecCCCchHHHHHHHHHHhcc
Q psy15811 541 HYVPQWLE-------EGVNIIGGCCEVTSYEIQQMRIMIDEF 575 (581)
Q Consensus 541 ~~~~~w~~-------~G~~iiGGCCGt~P~hI~al~~~l~~~ 575 (581)
..++.|.. ..++||||+.-+.+ ++.+|++.|+..
T Consensus 141 al~~~~~~~~~~~~~~~VNlig~~~~~~~-d~~el~~lL~~~ 181 (428)
T cd01965 141 AIIEQLAKPSEVKKNGKVNLLPGFPLTPG-DVREIKRILEAF 181 (428)
T ss_pred HHHHHHhcccCCCCCCeEEEECCCCCCcc-CHHHHHHHHHHc
Confidence 22233322 24999999886544 778888887654
No 464
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=42.56 E-value=51 Score=31.33 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 412 ~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
++++..+++|+|.|.+.+|+ ..+.+.+++.+++.... +.+.++ .|-+++.+.+.. ..+++.|++-+
T Consensus 91 ee~~ea~~~g~d~I~lD~~~-~~~~~~~v~~l~~~~~~-v~ie~S--------GGI~~~ni~~ya----~~gvD~isvg~ 156 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNMS-PEDLKEAVEELRELNPR-VKIEAS--------GGITLENIAEYA----KTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHTT-SEEEEES-C-HHHHHHHHHHHHHHTTT-SEEEEE--------SSSSTTTHHHHH----HTT-SEEEECH
T ss_pred HHHHHHHHhCCCEEEecCcC-HHHHHHHHHHHhhcCCc-EEEEEE--------CCCCHHHHHHHH----hcCCCEEEcCh
Confidence 56667777999999999985 68999999988864222 444442 234444444443 34678888766
No 465
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=42.54 E-value=1.2e+02 Score=35.08 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh----cCCCeEEEEEEEc
Q psy15811 409 WHRPNVEALVRAGVDYLALETIPAEKEALALVKLLRE----FPGQKAWLSFSCK 458 (581)
Q Consensus 409 ~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~----~~~~pv~iSft~~ 458 (581)
.--+|+..|.++|+|++-+ |+|+..|++++-..-++ -..+|.+.-+.|.
T Consensus 111 atv~Qi~~l~~aGceiVRv-tv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 163 (733)
T PLN02925 111 ATVDQVMRIADKGADIVRI-TVQGKKEADACFEIKNTLVQKGYNIPLVADIHFA 163 (733)
T ss_pred HHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCC
Confidence 3457888999999999875 77998888876665553 2468877655554
No 466
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.51 E-value=4.6e+02 Score=28.10 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=15.3
Q ss_pred HHHHHHHHHHH-------Hhccccccccc
Q psy15811 42 EACVETHRDFI-------RAGADIIQSSC 63 (581)
Q Consensus 42 e~v~~iH~~yl-------~AGAdiI~TnT 63 (581)
+.|+++-++|. +||.|.|+-+-
T Consensus 137 ~eI~~ii~~f~~AA~~a~~aGfDgVeih~ 165 (361)
T cd04747 137 ADIDDVIAAFARAAADARRLGFDGIELHG 165 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 34667777776 56888887664
No 467
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=42.34 E-value=2.7e+02 Score=27.78 Aligned_cols=93 Identities=11% Similarity=0.123 Sum_probs=52.9
Q ss_pred HHHHHHHCCCcEEEEE--ccCCHHHHHHHHHHHHhcCCCcEEEEEEEcC-----CCcCCCCCCHHHHHHHHHhhCCCCce
Q psy15811 157 NVEALVRAGVDYLALE--TIPAEKEALALVKLLREFPGQKAWLSFSCKD-----DTHTSHGELISSAVTSCLLANPDQIQ 229 (581)
Q Consensus 157 q~~~l~~~gvD~l~~E--T~~~~~E~~aa~~a~~~~~~~pv~isft~~~-----~g~l~~G~~~~~~~~~~~~~~~~~~~ 229 (581)
+++.+++.|+|-+.+= ++.+.+-++.+++.+.+ . +++|+-+.. .|...+..++.+.+..+. ..++.
T Consensus 89 dv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~---~-i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~---~~G~~ 161 (241)
T PRK14024 89 SLEAALATGCARVNIGTAALENPEWCARVIAEHGD---R-VAVGLDVRGHTLAARGWTRDGGDLWEVLERLD---SAGCS 161 (241)
T ss_pred HHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhh---h-EEEEEEEeccEeccCCeeecCccHHHHHHHHH---hcCCC
Confidence 4566677899998765 45676666666655532 2 556554422 232334455666666664 35555
Q ss_pred EEEeCCC-------ChhhHHHHHHHHHhhCCCCceEE
Q psy15811 230 AIGVNCV-------RPSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 230 ~vGvNC~-------~p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
.+-++.. +|+ .++++++.+. .+.|++.
T Consensus 162 ~iiv~~~~~~g~~~G~d--~~~i~~i~~~-~~ipvia 195 (241)
T PRK14024 162 RYVVTDVTKDGTLTGPN--LELLREVCAR-TDAPVVA 195 (241)
T ss_pred EEEEEeecCCCCccCCC--HHHHHHHHhh-CCCCEEE
Confidence 5544442 342 4666777764 5666654
No 468
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=42.33 E-value=2.1e+02 Score=30.60 Aligned_cols=153 Identities=9% Similarity=0.000 Sum_probs=78.7
Q ss_pred CCCCCHHH---HHHHHHHHHHHHHHCCCcEE--------EEEccCCH--------------HH---HHHHHHHHHhcC-C
Q psy15811 142 VDSMTEAD---LIAWHRPNVEALVRAGVDYL--------ALETIPAE--------------KE---ALALVKLLREFP-G 192 (581)
Q Consensus 142 ~~~~~~~~---~~~~~~~q~~~l~~~gvD~l--------~~ET~~~~--------------~E---~~aa~~a~~~~~-~ 192 (581)
.+++|.+| +.+.|..-++...++|.|.| |+..|-+. .- ++.+++++|+.. .
T Consensus 146 p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~ 225 (362)
T PRK10605 146 PRALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGA 225 (362)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 45677654 66677777778888999998 33444321 11 234555555432 2
Q ss_pred CcEEEEEEEcCC-CcCCCCCCHHH-HHHHHHhhCCCCceEEEeCCCC----hhhHHHHHHHHHhhCCCCceEEecCCCcc
Q psy15811 193 QKAWLSFSCKDD-THTSHGELISS-AVTSCLLANPDQIQAIGVNCVR----PSHVSTLVRCIKQSHPTVQTIVYPNKGVK 266 (581)
Q Consensus 193 ~pv~isft~~~~-g~l~~G~~~~~-~~~~~~~~~~~~~~~vGvNC~~----p~~~~~~l~~l~~~~~~~p~~~~pnag~~ 266 (581)
-++.+-++..+. .....|.++++ ++..+..+...++|.|-|.+.. +.....+.+.+++. .++|+++-- +.
T Consensus 226 ~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~-~~~pv~~~G--~~- 301 (362)
T PRK10605 226 DRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRAR-FHGVIIGAG--AY- 301 (362)
T ss_pred CeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHH-CCCCEEEeC--CC-
Confidence 235554543320 12345777776 4544333335678888887731 11223444566654 455655431 11
Q ss_pred ccCCCchhhhccccC-cccCCCCcccccccCCChHHHHHH
Q psy15811 267 LLDGSFTSQVSRHTI-KDVDGHPLWSSVYLTTEPEACVET 305 (581)
Q Consensus 267 ~~dG~~gt~L~~~~g-~~~~g~~lws~~~~~~~Pe~v~~v 305 (581)
+-..+.++.+. | .++.+ -.+.++.+|+.+.++
T Consensus 302 --~~~~ae~~i~~-G~~D~V~----~gR~~iadPd~~~k~ 334 (362)
T PRK10605 302 --TAEKAETLIGK-GLIDAVA----FGRDYIANPDLVARL 334 (362)
T ss_pred --CHHHHHHHHHc-CCCCEEE----ECHHhhhCccHHHHH
Confidence 11223333333 3 23221 234466788777766
No 469
>PTZ00413 lipoate synthase; Provisional
Probab=42.18 E-value=3.9e+02 Score=29.00 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=49.1
Q ss_pred HHHHHHHhCCCCEE--EecccCC-----------HHHHHHHHHHHHhc--CCCeEEEEEEEcCCCcCCCCCcHHHHHHHH
Q psy15811 412 PNVEALVRAGVDYL--ALETIPA-----------EKEALALVKLLREF--PGQKAWLSFSCKDDTHTSHGELISSAVTSC 476 (581)
Q Consensus 412 ~~~~~l~~~gvD~i--~~ET~p~-----------~~Ea~a~~~~~~~~--~~~pv~iSft~~~~~~l~~G~~~~~~~~~l 476 (581)
++++.|.++|+|.+ =+||.|. ..+...+++.+++. .++.+--++ -+-.||+.+|.++.+
T Consensus 243 e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGi------IVGLGET~eEvie~m 316 (398)
T PTZ00413 243 KSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSI------MLGLGETEEEVRQTL 316 (398)
T ss_pred HHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeee------EecCCCCHHHHHHHH
Confidence 78999999999998 4688766 33344445555542 244433333 335799999988888
Q ss_pred HhhCCCCceEEEECC
Q psy15811 477 LLANPDQIQAIGVNC 491 (581)
Q Consensus 477 ~~~~~~~~~~iGiNC 491 (581)
..+...+++.+-|+-
T Consensus 317 ~dLrelGVDivtIGQ 331 (398)
T PTZ00413 317 RDLRTAGVSAVTLGQ 331 (398)
T ss_pred HHHHHcCCcEEeecc
Confidence 766666777666654
No 470
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=42.11 E-value=68 Score=33.78 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=34.8
Q ss_pred HHHHHHHHCCCcEEEEE--------c-------cCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHH
Q psy15811 156 PNVEALVRAGVDYLALE--------T-------IPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSC 220 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~E--------T-------~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~ 220 (581)
++++.+.++|||+|.+. | .|.+.-+..+.+++++. ++||+. +|-..++..+..++
T Consensus 147 ~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~-~vpVIA------~GGI~~~~di~kAl--- 216 (325)
T cd00381 147 EAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDY-GVPVIA------DGGIRTSGDIVKAL--- 216 (325)
T ss_pred HHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc-CCcEEe------cCCCCCHHHHHHHH---
Confidence 35667778999999862 1 12333333334444433 688774 34344444444333
Q ss_pred HhhCCCCceEEEe
Q psy15811 221 LLANPDQIQAIGV 233 (581)
Q Consensus 221 ~~~~~~~~~~vGv 233 (581)
..|+++|++
T Consensus 217 ----a~GA~~Vmi 225 (325)
T cd00381 217 ----AAGADAVML 225 (325)
T ss_pred ----HcCCCEEEe
Confidence 257777766
No 471
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=42.03 E-value=3.2e+02 Score=28.13 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=54.5
Q ss_pred HHHHHHHCCCcEEEEEcc-----------CCHHHH----HHHHHHHHhcCCCcEEEEEEEcCCC--cCCCCCCHHHHHHH
Q psy15811 157 NVEALVRAGVDYLALETI-----------PAEKEA----LALVKLLREFPGQKAWLSFSCKDDT--HTSHGELISSAVTS 219 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~-----------~~~~E~----~aa~~a~~~~~~~pv~isft~~~~g--~l~~G~~~~~~~~~ 219 (581)
.++..+++|+|.+-+-.- .+.+|+ +.+++.+++. ++.+.+++ .+-+ +..+-..+.+.++.
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~-G~~v~~~~--~d~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKN-GIEVNIYL--EDWSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhC-CCEEEEEE--EeCCCCCcCCHHHHHHHHHH
Confidence 456677889998755531 133333 3345555554 66555444 4322 11122233344444
Q ss_pred HHhhCCCCceEEEeCCC----ChhhHHHHHHHHHhhCCCCceEEe
Q psy15811 220 CLLANPDQIQAIGVNCV----RPSHVSTLVRCIKQSHPTVQTIVY 260 (581)
Q Consensus 220 ~~~~~~~~~~~vGvNC~----~p~~~~~~l~~l~~~~~~~p~~~~ 260 (581)
+. ..|++.|.+-=+ .|..+..+++.+++..++.||.+.
T Consensus 156 ~~---~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H 197 (280)
T cd07945 156 LS---DLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFH 197 (280)
T ss_pred HH---HcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEE
Confidence 43 467887766554 499999999999874234555443
No 472
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.02 E-value=1.2e+02 Score=31.43 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=42.6
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHh-cCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKLLRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~-~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
|+...++.|+|+|.+..| ++++++.+++.+++ .++.|+.+| .|-+.+.+-+ +. ..|+|.|-+-+
T Consensus 208 ea~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~~~i~leAs----------GGIt~~ni~~-ya---~tGvD~Isvgs 272 (288)
T PRK07428 208 QVQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQNPRVKIEAS----------GNITLETIRA-VA---ETGVDYISSSA 272 (288)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcCCCeEEEEE----------CCCCHHHHHH-HH---HcCCCEEEEch
Confidence 444455799999999976 56899999988874 345555442 3455554433 22 47888887766
No 473
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=42.01 E-value=87 Score=32.07 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=39.2
Q ss_pred HHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 159 EALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 159 ~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
...++.|+|+|.+.+|+ .++++.+++.+++.+++|+.+| -|-+++.+-. +. ..|+++|.+
T Consensus 195 ~~A~~~gaD~I~ld~~~-~e~l~~~v~~i~~~~~i~i~as----------GGIt~~ni~~-~a---~~Gad~Isv 254 (269)
T cd01568 195 EEALEAGADIIMLDNMS-PEELKEAVKLLKGLPRVLLEAS----------GGITLENIRA-YA---ETGVDVIST 254 (269)
T ss_pred HHHHHcCCCEEEECCCC-HHHHHHHHHHhccCCCeEEEEE----------CCCCHHHHHH-HH---HcCCCEEEE
Confidence 33346799999999974 4788888877765445665542 3555655443 32 367888876
No 474
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=41.74 E-value=3e+02 Score=30.96 Aligned_cols=92 Identities=15% Similarity=0.033 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhCCCCEEEeccc---CCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCc
Q psy15811 408 AWHRPNVEALVRAGVDYLALETI---PAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQI 484 (581)
Q Consensus 408 ~~~~~~~~~l~~~gvD~i~~ET~---p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~ 484 (581)
+.-.++++.+.+.|+|+|=+-.- |...+++.+++.+++..+.| +|+- -.....+-..+ ..++
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~p--ISID---------T~~~~v~eaAL----~aGA 229 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALDSP--VIAD---------TPTLDELYEAL----KAGA 229 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCCc--EEEe---------CCCHHHHHHHH----HcCC
Confidence 55667888888899999866543 55556778888888644555 4651 11122222223 1144
Q ss_pred eEEEECCCCCccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 485 QAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 485 ~~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
+ -||-++...+..+++.++.. +.++++.|+
T Consensus 230 d--iINsVs~~~~d~~~~l~a~~--g~~vVlm~~ 259 (499)
T TIGR00284 230 S--GVIMPDVENAVELASEKKLP--EDAFVVVPG 259 (499)
T ss_pred C--EEEECCccchhHHHHHHHHc--CCeEEEEcC
Confidence 4 46654444444555544444 468888875
No 475
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=41.58 E-value=4.4e+02 Score=31.26 Aligned_cols=116 Identities=17% Similarity=0.166 Sum_probs=67.8
Q ss_pred CCCH---HHHHHHHHHHHHHHHhCCCCEEEeccc----------CC---------------HHHHHHHHHHHHhcC--CC
Q psy15811 400 SMTE---ADLIAWHRPNVEALVRAGVDYLALETI----------PA---------------EKEALALVKLLREFP--GQ 449 (581)
Q Consensus 400 ~~~~---~~~~~~~~~~~~~l~~~gvD~i~~ET~----------p~---------------~~Ea~a~~~~~~~~~--~~ 449 (581)
.++. +++.+.|.+.++...++|.|.|=+=-= |. ..=...+++++|+.. +.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 4554 556778888888888999999844211 11 223345666666543 45
Q ss_pred eEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC--CCC--------ccchHHHHHHHhhCCCCeEEEeeC
Q psy15811 450 KAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC--VRP--------SHVSTLVRCIKQSHPTVQTIVYPN 518 (581)
Q Consensus 450 pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC--~~p--------~~~~~~l~~l~~~~~~~pl~~ypN 518 (581)
|+.+-++.. +....|.++++.+..+..+...+++.|-|.. ... .......+.+++.. ++|+++--+
T Consensus 620 ~v~~ri~~~--~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pv~~~G~ 695 (765)
T PRK08255 620 PMSVRISAH--DWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEA-GIATIAVGA 695 (765)
T ss_pred eeEEEEccc--cccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHc-CCEEEEeCC
Confidence 666666542 3344577788776655444555677666643 111 12234456666665 588776433
No 476
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=41.33 E-value=2.1e+02 Score=30.11 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=58.0
Q ss_pred HHHHHHHhcC-CCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCC----C---Cccch---HHHHHHHh
Q psy15811 438 ALVKLLREFP-GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV----R---PSHVS---TLVRCIKQ 506 (581)
Q Consensus 438 a~~~~~~~~~-~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~----~---p~~~~---~~l~~l~~ 506 (581)
.-.+.+|+.. +.|++.++-+..-. |.+.+++.+.+... .+....|++||. . +.... ..|+.+..
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~----~~~~~~~~~~i~~~-~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~ 175 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLN----GYGVEEARRAVEMI-EADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVK 175 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccC----CCCHHHHHHHHHhc-CCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 4445555443 58999988664321 44555555554222 455566788872 2 22333 44566666
Q ss_pred hCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcE--EeecCCCc
Q psy15811 507 SHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNI--IGGCCEVT 561 (581)
Q Consensus 507 ~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~i--iGGCCGt~ 561 (581)
.. ++|+++.-+.. .. + .+.++.+.+.|+.. |+|.+||+
T Consensus 176 ~~-~vPVivK~~g~----g~--------s----~~~a~~l~~~Gvd~I~vsG~GGt~ 215 (326)
T cd02811 176 AL-SVPVIVKEVGF----GI--------S----RETAKRLADAGVKAIDVAGAGGTS 215 (326)
T ss_pred hc-CCCEEEEecCC----CC--------C----HHHHHHHHHcCCCEEEECCCCCCc
Confidence 54 68999886431 01 1 24456677888755 56666653
No 477
>KOG0369|consensus
Probab=41.31 E-value=96 Score=35.67 Aligned_cols=65 Identities=22% Similarity=0.337 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHH-hcCCCeEEEEE
Q psy15811 391 SEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLR-EFPGQKAWLSF 455 (581)
Q Consensus 391 ~eY~g~y~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~-~~~~~pv~iSf 455 (581)
-.|+|+-.++--.+--.+||...++.|.++|.-++-+-+|-- ..-++..+.++| +++++|+-++-
T Consensus 701 i~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHt 769 (1176)
T KOG0369|consen 701 ICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHT 769 (1176)
T ss_pred EeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEec
Confidence 456666554322255578999999999999999999988876 455677778888 57899988775
No 478
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.30 E-value=1.4e+02 Score=31.50 Aligned_cols=73 Identities=22% Similarity=0.177 Sum_probs=49.8
Q ss_pred HHHHHHHH--CCCcEEEEEc---------------cCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHH
Q psy15811 156 PNVEALVR--AGVDYLALET---------------IPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVT 218 (581)
Q Consensus 156 ~q~~~l~~--~gvD~l~~ET---------------~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~ 218 (581)
+-++.|.+ -|||++=+|. +.+.+|+.+.++...+..++|+++ |..|.+.+.+..
T Consensus 189 ~amkefs~~~~gvDVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~~~~~P~i~---------LSaGV~~~~F~~ 259 (329)
T PRK04161 189 GAMKVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATHLPYIY---------LSAGVSAKLFQE 259 (329)
T ss_pred HHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhcccCCCEEE---------EcCCCCHHHHHH
Confidence 33455554 5999997743 334667777777666667899886 667877776665
Q ss_pred HHHhhCCCCceEEEeCCCC
Q psy15811 219 SCLLANPDQIQAIGVNCVR 237 (581)
Q Consensus 219 ~~~~~~~~~~~~vGvNC~~ 237 (581)
.+.-+...|+..-||=|+.
T Consensus 260 ~l~~A~~aGa~fnGvL~GR 278 (329)
T PRK04161 260 TLVFAAEAGAQFNGVLCGR 278 (329)
T ss_pred HHHHHHhcCCCcccEEeeh
Confidence 5544445778888999973
No 479
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=41.26 E-value=3.9e+02 Score=30.06 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=64.6
Q ss_pred HHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCeE--EEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEEC
Q psy15811 414 VEALVRAGVDYL-ALETIPAEKEALALVKLLREFPGQKA--WLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN 490 (581)
Q Consensus 414 ~~~l~~~gvD~i-~~ET~p~~~Ea~a~~~~~~~~~~~pv--~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiN 490 (581)
++...++|+|.| +|-.+.++.-++.+++++++ .+.-+ .++++..+. + +-+.+.+.++.+ ...+++.|.|-
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~-ag~~~~~~i~yt~sp~-~--t~e~~~~~a~~l---~~~Gad~I~Ik 175 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKK-VGKHAQGTICYTVSPI-H--TVEGFVEQAKRL---LDMGADSICIK 175 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHH-hCCeEEEEEEEecCCC-C--CHHHHHHHHHHH---HHcCCCEEEeC
Confidence 344456899997 66677778888999999997 45545 344444321 1 222344444444 45577777766
Q ss_pred C----CCCccchHHHHHHHhhCC-CCeEEEeeC
Q psy15811 491 C----VRPSHVSTLVRCIKQSHP-TVQTIVYPN 518 (581)
Q Consensus 491 C----~~p~~~~~~l~~l~~~~~-~~pl~~ypN 518 (581)
- ..|..+..+++.|+...+ ++|+.+.-.
T Consensus 176 DtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~H 208 (499)
T PRK12330 176 DMAALLKPQPAYDIVKGIKEACGEDTRINLHCH 208 (499)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 5 268889999999988752 588887774
No 480
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=41.26 E-value=2.2e+02 Score=28.74 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=73.8
Q ss_pred HHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-CCCccchHHHHHHHhhCCCCeEEEee
Q psy15811 439 LVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIVYP 517 (581)
Q Consensus 439 ~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC-~~p~~~~~~l~~l~~~~~~~pl~~yp 517 (581)
+++-+++. +.+|++-+-+.| -|.+...+++.. ...+++++-++. .+.+.|..+++.+...+ ...+++--
T Consensus 54 ~~~el~~~-~~~VflDlK~~D-----IpnT~~~~~~~~---~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~-~~vl~vT~ 123 (240)
T COG0284 54 ILEELKAR-GKKVFLDLKLAD-----IPNTVALAAKAA---ADLGADAVTVHAFGGFDMLRAAKEALEAGG-PFVLAVTS 123 (240)
T ss_pred HHHHHHHh-CCceEEeeeccc-----chHHHHHHHHHh---hhcCCcEEEEeCcCCHHHHHHHHHHHhhcC-ceEEEEEe
Confidence 45555542 448887776544 466777777765 466889888888 57777777777776654 25677777
Q ss_pred CCCCCcc-cccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHHHHh
Q psy15811 518 NKGGVWD-SVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMID 573 (581)
Q Consensus 518 Nag~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~~l~ 573 (581)
|.+..-. .....+. ..-.+.+.++++.+...|. +|. .++|++.+++++...
T Consensus 124 lts~~~~~~~~~~~~-~~~~~~v~~~a~~~~~~G~--dgv--v~~~~e~~~ir~~~g 175 (240)
T COG0284 124 LTSMGELQLAELGIN-SSLEEQVLRLAKLAGEAGL--DGV--VCSAEEVAAIREILG 175 (240)
T ss_pred CCCchhhhhhhcccc-chHHHHHHHHHHHhccCCc--eEE--EcCHHHHHHHHHhcC
Confidence 8763211 0101110 1113456667777766665 555 356888888887764
No 481
>PRK00957 methionine synthase; Provisional
Probab=41.21 E-value=4.2e+02 Score=27.31 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcccccccccccccc-ccHhh-c-CCC----HHHHH----HHHHHHHHHHHHHhhhhcCCCccccccc
Q psy15811 42 EACVETHRDFIRAGADIIQSSCYQANV-DNLTK-L-GYS----EQEAL----DLLHKSVQLMNSAKDKENQTPDINLNKT 110 (581)
Q Consensus 42 e~v~~iH~~yl~AGAdiI~TnTf~a~~-~~l~~-~-g~~----~~~~~----~i~~~av~lA~~a~~~~~~~~~~~~~~~ 110 (581)
+.|+++-+...++|-|+|+---|+-+- ..+.+ + |+. ..+++ .+.-.-.+.+++...+...
T Consensus 36 ~ai~~~v~~q~~~Gld~vtdGe~r~~~~~~f~~~l~G~~~~~vvg~i~~~~~~~~~~~~~~~~~~~~~~~~--------- 106 (305)
T PRK00957 36 PAIEEAVADQVKAGIDIISDGQVRGDMVEIFASNMPGFDGKRVIGRVEPPAKPITLKDLKYAKKVAKKKDP--------- 106 (305)
T ss_pred HHHHHHHHHHHHhCCCeecCCCccCchHHHHHhcCCCccCCeEEEeecCCCCCCcHHHHHHHHHHHhccCC---------
Confidence 367788888899999999777665210 00111 1 210 00100 1222334444444332100
Q ss_pred ccccCCCeEEEeecCCcCCCCCCCCCCC-CCCCCC---CCHHHHHHHHHHHHHHHHHCCCcEE-EEEc-----cCCHHHH
Q psy15811 111 FNLLTGHIETAASIGPYGTVLRDGSEYS-GHYVDS---MTEADLIAWHRPNVEALVRAGVDYL-ALET-----IPAEKEA 180 (581)
Q Consensus 111 ~~~~~~~~~VagsiGP~g~~~~~~~ey~-~~y~~~---~~~~~~~~~~~~q~~~l~~~gvD~l-~~ET-----~~~~~E~ 180 (581)
. ......-.||+.-...- +. .-|... --..++...|++.++.|.+.|+++| +=|. +.+.+.+
T Consensus 107 ~-----~~vK~~i~GP~Tla~~~---~~~~~y~~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~~~~~ 178 (305)
T PRK00957 107 N-----KGVKGIITGPSTLAYSL---RVEPFYSDNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYDLEVA 178 (305)
T ss_pred C-----CceeEEecCHHHHHhhc---ccccccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCchHHHH
Confidence 0 12344557777643211 11 112221 1146788999999999999999975 3342 2233333
Q ss_pred HHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCCCC
Q psy15811 181 LALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR 237 (581)
Q Consensus 181 ~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC~~ 237 (581)
..+++.+.+..+.++.+..+ |. ....+..+. ..+++++++-.++
T Consensus 179 ~~~~~~~~~~i~~~v~lH~C----G~------~~~i~~~l~---~~~vd~i~ld~~~ 222 (305)
T PRK00957 179 KKAIDIITKGLNVPVAMHVC----GD------VSNIIDDLL---KFNVDILDHEFAS 222 (305)
T ss_pred HHHHHHHHHhhCCceEEEEC----CC------cHHHHHHHH---hCCCCEEEEeecC
Confidence 33333333222444444443 21 133445553 4678999999874
No 482
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=41.17 E-value=1.2e+02 Score=31.59 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=43.8
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
+|+...+++|+|+|++.+|+ .+|++.+++.++. .+.+.. ..|.+++.+.+-+ ..|+|.|.+-+
T Consensus 219 eea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~----~~~iea--------SGGI~~~ni~~yA----~tGVD~Is~ga 281 (296)
T PRK09016 219 DELDQALKAGADIIMLDNFT-TEQMREAVKRTNG----RALLEV--------SGNVTLETLREFA----ETGVDFISVGA 281 (296)
T ss_pred HHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC----CeEEEE--------ECCCCHHHHHHHH----hcCCCEEEeCc
Confidence 45566778999999999987 6899999987653 233322 1355665554333 47899999887
No 483
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=40.96 E-value=1.4e+02 Score=32.92 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=18.3
Q ss_pred CCCcHHHHHHHHHhhCCCCceEEEECCC
Q psy15811 465 HGELISSAVTSCLLANPDQIQAIGVNCV 492 (581)
Q Consensus 465 ~G~~~~~~~~~l~~~~~~~~~~iGiNC~ 492 (581)
.|++++.+++.+... .++..|-++|-
T Consensus 133 iGdDi~~v~~~~~~~--~~~pvi~v~t~ 158 (443)
T TIGR01862 133 IGDDIEAVAKEVSKE--IGKDVVAVNCP 158 (443)
T ss_pred hccCHHHHHHHHHHh--cCCCEEEEecC
Confidence 389999998887432 23567788883
No 484
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=40.93 E-value=2.3e+02 Score=31.61 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHH
Q psy15811 407 IAWHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSC 476 (581)
Q Consensus 407 ~~~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l 476 (581)
.++|.+.++.+.+.|+|.|.+-++-- ..++..+++++++..++|+-+|+ .+ -.|..+..++.++
T Consensus 152 ~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~--Hn----t~GlA~AN~laAi 218 (467)
T PRK14041 152 LEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHS--HC----TTGLASLAYLAAV 218 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEe--cC----CCCcHHHHHHHHH
Confidence 57788889999999999998886654 77888888888865567765555 32 2344444444444
No 485
>PRK07360 FO synthase subunit 2; Reviewed
Probab=40.85 E-value=56 Score=35.07 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHHHHHHHCCCcEEEEEcc-------------C---CHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHH
Q psy15811 154 HRPNVEALVRAGVDYLALETI-------------P---AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAV 217 (581)
Q Consensus 154 ~~~q~~~l~~~gvD~l~~ET~-------------~---~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~ 217 (581)
.+++++.|.++|+|.+. ||- | +.++-..+++.+++. ++++-..+-+- .|++.++.+
T Consensus 162 ~~e~l~~LkeAGld~~~-~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~-Gl~~~sg~i~G------~gEt~edrv 233 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKL-GLPTTSTMMYG------HVETPEHRI 233 (371)
T ss_pred HHHHHHHHHHcCCCcCC-CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHc-CCCceeeEEee------CCCCHHHHH
Confidence 36788999999999985 542 2 445556666666665 66665444332 366676666
Q ss_pred HHH
Q psy15811 218 TSC 220 (581)
Q Consensus 218 ~~~ 220 (581)
..+
T Consensus 234 ~~l 236 (371)
T PRK07360 234 DHL 236 (371)
T ss_pred HHH
Confidence 544
No 486
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=40.77 E-value=1.6e+02 Score=32.98 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHhhCCCCceEEEECC
Q psy15811 465 HGELISSAVTSCLLANPDQIQAIGVNC 491 (581)
Q Consensus 465 ~G~~~~~~~~~l~~~~~~~~~~iGiNC 491 (581)
.|+++..+++.+ ... ++..|.++|
T Consensus 100 IGdDi~~~~~~~--~~~-~~pvi~v~t 123 (511)
T TIGR01278 100 LQEDLGNLAAAA--GLD-KSKVIVADV 123 (511)
T ss_pred hccCHHHHHHHh--ccC-CCcEEEecC
Confidence 466666666655 111 455666666
No 487
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=40.69 E-value=4.6e+02 Score=27.64 Aligned_cols=118 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcCCCcccccccccccCCCeEEEeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy15811 85 LHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRA 164 (581)
Q Consensus 85 ~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~~q~~~l~~~ 164 (581)
.+.-++..++.... ..+|..|+|-... ..+++..|+++
T Consensus 68 ~E~~~sfvrk~k~~------------------~L~v~~SvG~t~e------------------------~~~r~~~lv~a 105 (321)
T TIGR01306 68 EESRIPFIKDMQER------------------GLFASISVGVKAC------------------------EYEFVTQLAEE 105 (321)
T ss_pred HHHHHHHHHhcccc------------------ccEEEEEcCCCHH------------------------HHHHHHHHHhc
Q ss_pred C--CcEEEEEc-cCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCC-CCHHHHHHHHHhhCCCCceEEEeC------
Q psy15811 165 G--VDYLALET-IPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHG-ELISSAVTSCLLANPDQIQAIGVN------ 234 (581)
Q Consensus 165 g--vD~l~~ET-~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G-~~~~~~~~~~~~~~~~~~~~vGvN------ 234 (581)
| +|++.+.+ -.+-..+...++.+|+.-..|.++ -| ..-.+.+..+.+ .|+++|=|-
T Consensus 106 ~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi-----------~GnV~t~e~a~~l~~---aGad~I~V~~G~G~~ 171 (321)
T TIGR01306 106 ALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVI-----------AGNVGTPEAVRELEN---AGADATKVGIGPGKV 171 (321)
T ss_pred CCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEE-----------EecCCCHHHHHHHHH---cCcCEEEECCCCCcc
Q ss_pred --------CCChhhHHHHHHHHHhhCCCCceEE
Q psy15811 235 --------CVRPSHVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 235 --------C~~p~~~~~~l~~l~~~~~~~p~~~ 259 (581)
+..+......+..+.+. .++|++.
T Consensus 172 ~~tr~~~g~g~~~~~l~ai~ev~~a-~~~pVIa 203 (321)
T TIGR01306 172 CITKIKTGFGTGGWQLAALRWCAKA-ARKPIIA 203 (321)
T ss_pred ccceeeeccCCCchHHHHHHHHHHh-cCCeEEE
No 488
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=40.65 E-value=5.2e+02 Score=28.26 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE----Eec---ccCCHHHHHHHHHHHHh---cCCCeEEEEEEEcCCCcCCCCCcHH
Q psy15811 401 MTEADLIAWHRPNVEALVRAGVDYL----ALE---TIPAEKEALALVKLLRE---FPGQKAWLSFSCKDDTHTSHGELIS 470 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~gvD~i----~~E---T~p~~~Ea~a~~~~~~~---~~~~pv~iSft~~~~~~l~~G~~~~ 470 (581)
++++++.+. +..+...|+|+| .+. -.|-.+-++++.+++++ .++.+.+-.+.+- |. ..
T Consensus 157 lsp~~~a~~----~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT-------~~-~~ 224 (412)
T TIGR03326 157 LSTEEHAKV----AYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANIT-------AP-VR 224 (412)
T ss_pred CChHHHHHH----HHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEec-------CC-HH
Confidence 566665554 444556899998 222 22335555666666653 4777777666552 22 34
Q ss_pred HHHHHHHhhCCCCceEEEECC--CCCccchHHHHHHHhh--CCCCeEEEeeCCCCCc
Q psy15811 471 SAVTSCLLANPDQIQAIGVNC--VRPSHVSTLVRCIKQS--HPTVQTIVYPNKGGVW 523 (581)
Q Consensus 471 ~~~~~l~~~~~~~~~~iGiNC--~~p~~~~~~l~~l~~~--~~~~pl~~ypNag~~~ 523 (581)
+..+..+.....+..++.||- ++. ..|+.|+.. ..+.|+...|+.-..+
T Consensus 225 em~~ra~~~~~~G~~~~mv~~~~~G~----~~l~~l~~~~~~~~l~ih~Hra~~ga~ 277 (412)
T TIGR03326 225 EMERRAELVADLGGQYVMVDVVVCGW----SALQYIRELTEDLGLAIHAHRAMHAAF 277 (412)
T ss_pred HHHHHHHHHHHhCCCeEEEEeeccch----HHHHHHHHhhccCCeEEEEcCCccccc
Confidence 444443222234555666666 232 234555542 1268999999865444
No 489
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=40.65 E-value=2.7e+02 Score=26.45 Aligned_cols=147 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred cccCCChHH----HHHHHHHHHHhccccccccccccccccHhhcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccccc
Q psy15811 35 VYLTTEPEA----CVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKT 110 (581)
Q Consensus 35 ~~~l~~Pe~----v~~iH~~yl~AGAdiI~TnTf~a~~~~l~~~g~~~~~~~~i~~~av~lA~~a~~~~~~~~~~~~~~~ 110 (581)
.+++++|+. ..+.-+.=+++|++.| -|...+.++.+..++.++-..++++--.
T Consensus 2 ly~it~~~~~~~~~~~~~~~~~~~g~~~v----------~lR~~~~~~~~~~~~~~~l~~~~~~~~~------------- 58 (196)
T TIGR00693 2 LYLITDPQDGPADLLNRVEAALKGGVTLV----------QLRDKGSNTRERLALAEKLQELCRRYGV------------- 58 (196)
T ss_pred EEEEECCccccccHHHHHHHHHhcCCCEE----------EEecCCCCHHHHHHHHHHHHHHHHHhCC-------------
Q ss_pred ccccCCCeEE------EeecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHH------------HHHHHHHHCCCcEEE--
Q psy15811 111 FNLLTGHIET------AASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHR------------PNVEALVRAGVDYLA-- 170 (581)
Q Consensus 111 ~~~~~~~~~V------agsiGP~g~~~~~~~ey~~~y~~~~~~~~~~~~~~------------~q~~~l~~~gvD~l~-- 170 (581)
+.+| +..+|..|-.+.. ..++.+.++..+. +++....+.|+|++.
T Consensus 59 ------~l~i~~~~~la~~~g~~GvHl~~---------~~~~~~~~r~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~ 123 (196)
T TIGR00693 59 ------PFIVNDRVDLALALGADGVHLGQ---------DDLPASEARALLGPDKIIGVSTHNLEELAEAEAEGADYIGFG 123 (196)
T ss_pred ------eEEEECHHHHHHHcCCCEEecCc---------ccCCHHHHHHhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEEC
Q ss_pred --EEccCCHH-----HHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEe
Q psy15811 171 --LETIPAEK-----EALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGV 233 (581)
Q Consensus 171 --~ET~~~~~-----E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGv 233 (581)
|.|-.... .....-...+..++.|+++ ..|-+.+.+-..+ ..|+++|.+
T Consensus 124 ~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a----------~GGI~~~~~~~~~----~~G~~gva~ 179 (196)
T TIGR00693 124 PIFPTPTKKDPAPPAGVELLREIAATSIDIPIVA----------IGGITLENAAEVL----AAGADGVAV 179 (196)
T ss_pred CccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEE----------ECCcCHHHHHHHH----HcCCCEEEE
No 490
>PRK07094 biotin synthase; Provisional
Probab=40.61 E-value=1.7e+02 Score=30.46 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCCEE--EecccC-----------CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHh
Q psy15811 412 PNVEALVRAGVDYL--ALETIP-----------AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLL 478 (581)
Q Consensus 412 ~~~~~l~~~gvD~i--~~ET~p-----------~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~ 478 (581)
+.++.|.++|+|.+ -+||.. +..+...+++.+++ .++++..+|.+- ..|++.++..+.+..
T Consensus 130 e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~-~Gi~v~~~~iiG-----lpget~ed~~~~l~~ 203 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKE-LGYEVGSGFMVG-----LPGQTLEDLADDILF 203 (323)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHH-cCCeecceEEEE-----CCCCCHHHHHHHHHH
Confidence 67778899999975 357763 36677777888887 588888888763 236666766665544
Q ss_pred hCCCCceEEEECCCC
Q psy15811 479 ANPDQIQAIGVNCVR 493 (581)
Q Consensus 479 ~~~~~~~~iGiNC~~ 493 (581)
....++..++++-..
T Consensus 204 l~~l~~~~v~~~~~~ 218 (323)
T PRK07094 204 LKELDLDMIGIGPFI 218 (323)
T ss_pred HHhCCCCeeeeeccc
Confidence 445677778887743
No 491
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=40.59 E-value=4.9e+02 Score=27.92 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=81.3
Q ss_pred CCCCCHH---HHHHHHHHHHHHHHHCCCcEEEEE--------ccCC-------------HH-H---HHHHHHHHHhc--C
Q psy15811 142 VDSMTEA---DLIAWHRPNVEALVRAGVDYLALE--------TIPA-------------EK-E---ALALVKLLREF--P 191 (581)
Q Consensus 142 ~~~~~~~---~~~~~~~~q~~~l~~~gvD~l~~E--------T~~~-------------~~-E---~~aa~~a~~~~--~ 191 (581)
.+++|.+ ++.+.|.+-++--.++|-|.|=+- -|-+ ++ - ++.+++++|+. .
T Consensus 136 pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~ 215 (363)
T COG1902 136 PRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGA 215 (363)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 3567665 567788888888888999987221 1111 11 1 34455556543 2
Q ss_pred CCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCC-ceEEEeCCCChh-----------hHHHHHHHHHhhCCCCceEE
Q psy15811 192 GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQ-IQAIGVNCVRPS-----------HVSTLVRCIKQSHPTVQTIV 259 (581)
Q Consensus 192 ~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~-~~~vGvNC~~p~-----------~~~~~l~~l~~~~~~~p~~~ 259 (581)
+.||.+-++..+. .-..|.++++++.-+......+ ++.+-+-=.+.+ ......+.++.. ..+|+++
T Consensus 216 ~~~vg~Rls~~d~-~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~-~~~pvi~ 293 (363)
T COG1902 216 DFPVGVRLSPDDF-FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKA-VRIPVIA 293 (363)
T ss_pred CceEEEEECcccc-CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHh-cCCCEEE
Confidence 4677777766543 2334778887776555444566 455443322111 111333334443 4466655
Q ss_pred ecCCCccccCCCchhhhccccC-cccCCCCcccccccCCChHHHHHH
Q psy15811 260 YPNKGVKLLDGSFTSQVSRHTI-KDVDGHPLWSSVYLTTEPEACVET 305 (581)
Q Consensus 260 ~pnag~~~~dG~~gt~L~~~~g-~~~~g~~lws~~~~~~~Pe~v~~v 305 (581)
-=+ +.+...+.++.+. | .++.+ -.+..+.+|+.+.++
T Consensus 294 ~G~----i~~~~~Ae~~l~~-g~aDlVa----~gR~~ladP~~~~k~ 331 (363)
T COG1902 294 VGG----INDPEQAEEILAS-GRADLVA----MGRPFLADPDLVLKA 331 (363)
T ss_pred eCC----CCCHHHHHHHHHc-CCCCEEE----echhhhcCccHHHHH
Confidence 422 2233345555554 4 33321 234467888888777
No 492
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=40.39 E-value=4.5e+02 Score=27.67 Aligned_cols=84 Identities=20% Similarity=0.183 Sum_probs=46.3
Q ss_pred HHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCC--CCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 158 VEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHG--ELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 158 ~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G--~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
++.+.+.|+|.|-+.-..++.|++. .+.+ .+.+.--+++ .++.| +.+.+.+..+.+....+-..+..-|
T Consensus 253 ~~~~~~~~~~~is~d~~~dl~~~k~------~~g~-~~~i~Gni~p--~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc 323 (346)
T PRK00115 253 LEAMAETGADVVGLDWTVDLAEARR------RVGD-KKALQGNLDP--AVLLAPPEAIEEEVRAILDGGGGPGHIFNLGH 323 (346)
T ss_pred HHHHHhcCCCEEeeCCCCCHHHHHH------HcCC-CeEEEeCCCh--hHhcCCHHHHHHHHHHHHHHhCCCCeeeecCC
Confidence 4556778999998888778876542 2222 2334334443 23344 3344444444432223346777889
Q ss_pred C-C----hhhHHHHHHHHHh
Q psy15811 236 V-R----PSHVSTLVRCIKQ 250 (581)
Q Consensus 236 ~-~----p~~~~~~l~~l~~ 250 (581)
. . ++++..+++..+.
T Consensus 324 ~i~~~tp~eNi~a~v~a~~~ 343 (346)
T PRK00115 324 GILPETPPENVKALVEAVHE 343 (346)
T ss_pred cCCCCcCHHHHHHHHHHHHH
Confidence 5 2 4666666666554
No 493
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=40.31 E-value=5.5e+02 Score=28.44 Aligned_cols=153 Identities=8% Similarity=-0.020 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-----Eecc--cCCHHHHHHHHHHHHh---cCCCeEEEEEEEcCCCcCCCCCcHH
Q psy15811 401 MTEADLIAWHRPNVEALVRAGVDYL-----ALET--IPAEKEALALVKLLRE---FPGQKAWLSFSCKDDTHTSHGELIS 470 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~gvD~i-----~~ET--~p~~~Ea~a~~~~~~~---~~~~pv~iSft~~~~~~l~~G~~~~ 470 (581)
++++++.+..++. ...|+|+| +... .|-.+-.+++.+++++ .++.+.+-.+.+ ++.+..
T Consensus 158 lsp~~~A~~~~~~----~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~Ni-------Ta~~~~ 226 (450)
T cd08212 158 LSAKNYGRVVYEC----LRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNV-------TAGTME 226 (450)
T ss_pred CCHHHHHHHHHHH----HccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccc-------cCCCHH
Confidence 6676666555544 45899997 2221 2224455566666663 477776666644 233344
Q ss_pred HHHHHHHhhCCCCceEEEECC-CCCccchHHHHHHHhhCCCCeEEEeeCCCCCccccc-ccccCCcCHHHHHHHHHHHHH
Q psy15811 471 SAVTSCLLANPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVH-MKWLDTEDEYSILHYVPQWLE 548 (581)
Q Consensus 471 ~~~~~l~~~~~~~~~~iGiNC-~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~-~~~~~~~~~~~~~~~~~~w~~ 548 (581)
+..+..+.....++.++.||. ++.. ..+.|...+... +.|+...|+.-..+.... .++ + +.-+.+=|+-
T Consensus 227 em~~ra~~a~~~G~~~~mv~~~~G~~-~l~~l~~~a~~~-~l~IhaHrA~~ga~~r~~~~Gi----s---~~vl~kl~RL 297 (450)
T cd08212 227 EMYKRAEFAKELGSPIIMHDLLTGFT-AIQSLAKWCRDN-GMLLHLHRAGHATYDRQKNHGI----H---FRVLAKWLRL 297 (450)
T ss_pred HHHHHHHHHHHhCCCeEeeecccccc-hHHHHHHHhhhc-CceEEeccccceecccCccCCc----C---HHHHHHHHHH
Confidence 444443322334556777775 3222 223333322233 799999999766554331 122 1 2222344555
Q ss_pred cCCcE-----EeecCCCchHHHHHHHHHHh
Q psy15811 549 EGVNI-----IGGCCEVTSYEIQQMRIMID 573 (581)
Q Consensus 549 ~G~~i-----iGGCCGt~P~hI~al~~~l~ 573 (581)
.|+.. ++|==.-+++...++++.+.
T Consensus 298 aGaD~ih~~t~~Gk~~~~~~~~~~~~~~~~ 327 (450)
T cd08212 298 SGVDHIHAGTVVGKLEGDPLVTLGFYDLLR 327 (450)
T ss_pred cCCCccccCCCcCCcCCCHHHHHHHHHHHh
Confidence 66543 35556667888888877753
No 494
>PRK12999 pyruvate carboxylase; Reviewed
Probab=40.07 E-value=71 Score=39.62 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCC---HHHHHHHHHHHHhcCCCeEEEEE
Q psy15811 407 IAWHRPNVEALVRAGVDYLALETIPA---EKEALALVKLLREFPGQKAWLSF 455 (581)
Q Consensus 407 ~~~~~~~~~~l~~~gvD~i~~ET~p~---~~Ea~a~~~~~~~~~~~pv~iSf 455 (581)
.++|.+.++.+.+.|+|.|.+-++-- ..++..+++++|+..++|+-+|+
T Consensus 690 ~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~ 741 (1146)
T PRK12999 690 LDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHT 741 (1146)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46888999999999999999987765 67788888888865577765554
No 495
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=40.07 E-value=1e+02 Score=31.58 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=40.6
Q ss_pred HHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 157 NVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
|+....+.|+|++.+..|+ +++++.+++.++. ++|+.++ -|-+++.+-. +. ..|+++|.+-.
T Consensus 194 ea~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~--~ipi~Ai----------GGI~~~ni~~-~a---~~Gvd~Iav~s 255 (268)
T cd01572 194 QLKEALEAGADIIMLDNMS-PEELREAVALLKG--RVLLEAS----------GGITLENIRA-YA---ETGVDYISVGA 255 (268)
T ss_pred HHHHHHHcCCCEEEECCcC-HHHHHHHHHHcCC--CCcEEEE----------CCCCHHHHHH-HH---HcCCCEEEEEe
Confidence 4444557899999999985 7788888776643 5676653 3555655433 32 36777776654
No 496
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=39.99 E-value=4.7e+02 Score=27.48 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=44.6
Q ss_pred HHHHHHHCCCcEEEEEccC-CHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCC---CHHHHHHHHHhhCC-CCceEE
Q psy15811 157 NVEALVRAGVDYLALETIP-AEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGE---LISSAVTSCLLANP-DQIQAI 231 (581)
Q Consensus 157 q~~~l~~~gvD~l~~ET~~-~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~---~~~~~~~~~~~~~~-~~~~~v 231 (581)
+++.+.+.|+|.+-+.... ++.|++ +..++ .+.++--+++. .+..+. .+.+.+..+.+... .+-..+
T Consensus 226 ~l~~~~e~g~dvl~~d~~~~dl~eak------~~~g~-k~~l~GNlDp~-~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf 297 (321)
T cd03309 226 LVPSMAEMGVDSWNVVMTANNTAELR------RLLGD-KVVLAGAIDDV-ALDTATWPEEDARGVAKAAAECAPIHPFIS 297 (321)
T ss_pred HHHHHHHcCCCEEEecCCCCCHHHHH------HHhCC-CeEEEcCCChH-HhcCCCCHHHHHHHHHHHHHHhCCCCCEEe
Confidence 4677888999999887665 776653 22222 23333333322 233333 34455555444222 244566
Q ss_pred EeCCCChhh-HHHHHHHHHh
Q psy15811 232 GVNCVRPSH-VSTLVRCIKQ 250 (581)
Q Consensus 232 GvNC~~p~~-~~~~l~~l~~ 250 (581)
.-.|..|.+ ..+.++.++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~ 317 (321)
T cd03309 298 APTAGLPFSIFPEVLRRVSA 317 (321)
T ss_pred CccCCCCcccCHHHHHHHHH
Confidence 666765532 2355555543
No 497
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=39.99 E-value=4e+02 Score=28.40 Aligned_cols=105 Identities=14% Similarity=0.060 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEEcc---CCHHHHHHHHHHHHhc-CCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCC
Q psy15811 150 LIAWHRPNVEALVRAGVDYLALETI---PAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANP 225 (581)
Q Consensus 150 ~~~~~~~q~~~l~~~gvD~l~~ET~---~~~~E~~aa~~a~~~~-~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~ 225 (581)
.+..-++.+++-.+.|+.+-+-.-- -+. |....++.+|+. ++.|+++++-+... .|.+.+++...+.. ..
T Consensus 75 ~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~-~~~~~~~~vr~~~p~~p~~aNl~~~~~----~~~~~~~~~~~~~~-~~ 148 (352)
T PRK05437 75 AKEINRKLAEAAEELGIAMGVGSQRAALKDP-ELADSFSVVRKVAPDGLLFANLGAVQL----YGYGVEEAQRAVEM-IE 148 (352)
T ss_pred HHHHHHHHHHHHHHcCCCeEecccHhhccCh-hhHHHHHHHHHHCCCceEEeecCcccc----CCCCHHHHHHHHHh-cC
Confidence 3444566666777788777654321 123 366777777764 58999999877532 25556655544432 23
Q ss_pred CCceEEEeCCC-------ChhhHH---HHHHHHHhhCCCCceEEec
Q psy15811 226 DQIQAIGVNCV-------RPSHVS---TLVRCIKQSHPTVQTIVYP 261 (581)
Q Consensus 226 ~~~~~vGvNC~-------~p~~~~---~~l~~l~~~~~~~p~~~~p 261 (581)
..+..+++||. +..... +.++.+... .++|++++-
T Consensus 149 adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~-~~vPVivK~ 193 (352)
T PRK05437 149 ADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSA-LPVPVIVKE 193 (352)
T ss_pred CCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHh-hCCCEEEEe
Confidence 45677888882 222333 667777774 578999773
No 498
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.92 E-value=1.3e+02 Score=31.09 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=42.8
Q ss_pred HHHHHHHHCCCcEEEEEccCCHHHHHHHHHHHHhcCCCcEEEEEEEcCCCcCCCCCCHHHHHHHHHhhCCCCceEEEeCC
Q psy15811 156 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC 235 (581)
Q Consensus 156 ~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~pv~isft~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~vGvNC 235 (581)
+|+...++.|+|+|.+..+ ++++++.+++.++ +++|+.+| -|-+++.+- .+. ..|++.|.+-+
T Consensus 200 eea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~--~~i~leAs----------GGIt~~ni~-~~a---~tGvD~Isvg~ 262 (277)
T PRK05742 200 DELRQALAAGADIVMLDEL-SLDDMREAVRLTA--GRAKLEAS----------GGINESTLR-VIA---ETGVDYISIGA 262 (277)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC--CCCcEEEE----------CCCCHHHHH-HHH---HcCCCEEEECh
Confidence 3445556889999999765 7888888887664 36776663 245555443 332 47888888877
No 499
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=39.88 E-value=2.9e+02 Score=28.90 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=14.2
Q ss_pred CCChHHHHHHHHHHHHhcccc
Q psy15811 38 TTEPEACVETHRDFIRAGADI 58 (581)
Q Consensus 38 l~~Pe~v~~iH~~yl~AGAdi 58 (581)
.-.||.|.+.-++..+.|+.-
T Consensus 34 ~l~~eeI~~~a~~~~~~G~~e 54 (322)
T TIGR03550 34 LLSPEEVLEILRKGAAAGCTE 54 (322)
T ss_pred cCCHHHHHHHHHHHHHCCCCE
Confidence 345666666666778889874
No 500
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=39.64 E-value=1.2e+02 Score=33.58 Aligned_cols=100 Identities=17% Similarity=0.266 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhCCCCceEEEECCC---CCccchHHHHHHHhhCC---CCeEEEeeCCCCCcccccccccCCcCHHHHHHH
Q psy15811 469 ISSAVTSCLLANPDQIQAIGVNCV---RPSHVSTLVRCIKQSHP---TVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHY 542 (581)
Q Consensus 469 ~~~~~~~l~~~~~~~~~~iGiNC~---~p~~~~~~l~~l~~~~~---~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~ 542 (581)
+.+++..+.+...+.+.+|--.|. --+++..++++++...+ ++|++.-...|..-... .+| ...+...
T Consensus 80 L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~-~G~-----~~a~~al 153 (455)
T PRK14476 80 VEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALE-DGW-----AAAVEAI 153 (455)
T ss_pred HHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHH-HHH-----HHHHHHH
Confidence 566666654333455555666662 23456666666654321 35655544333110000 112 1111122
Q ss_pred HHHHHH---------cCCcEEeecCCCchHHHHHHHHHHhcc
Q psy15811 543 VPQWLE---------EGVNIIGGCCEVTSYEIQQMRIMIDEF 575 (581)
Q Consensus 543 ~~~w~~---------~G~~iiGGCCGt~P~hI~al~~~l~~~ 575 (581)
++.+.. .-++||||+= .+|.++++|++.|+..
T Consensus 154 ~~~~~~~~~~~~~~~~~VNiIgg~~-~~~~D~~elk~lL~~~ 194 (455)
T PRK14476 154 VEALVPPASSTGRRPRQVNVLPGSH-LTPGDIEELREIIEAF 194 (455)
T ss_pred HHHhcccccCCCCCCCcEEEECCCC-CCcccHHHHHHHHHHc
Confidence 222221 2399999863 5789999999988754
Done!