RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15811
(581 letters)
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional.
Length = 304
Score = 252 bits (646), Expect = 2e-79
Identities = 101/260 (38%), Positives = 138/260 (53%), Gaps = 22/260 (8%)
Query: 6 KVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQ 65
V +LDG+ +++ D++ LWS+ L PE + H D+ RAGAD ++ YQ
Sbjct: 12 PVLILDGALATELEARGC-DLND-SLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQ 69
Query: 66 ANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIG 125
A G SE EA +L+ +SV+L A+D A S+G
Sbjct: 70 ATFQGFAARGLSEAEAEELIRRSVELAKEARD--------------EFWAEKPLVAGSVG 115
Query: 126 PYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVK 185
PYG L DGSEY G Y ++E +L +HRP +EAL AG D LA ETIP EA ALV+
Sbjct: 116 PYGAYLADGSEYRGDY--GLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVE 173
Query: 186 LLR-EFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTL 244
LL+ EFPG AWLSF+ +D TH S G ++ A LLA Q+ A+GVNC P V+
Sbjct: 174 LLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAA--LLAASPQVVAVGVNCTAPELVTAA 231
Query: 245 VRCIKQSHPTVQTIVYPNKG 264
+ ++ + +VYPN G
Sbjct: 232 IAALR-AVTDKPLVVYPNSG 250
Score = 244 bits (626), Expect = 1e-76
Identities = 113/316 (35%), Positives = 159/316 (50%), Gaps = 32/316 (10%)
Query: 261 PNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGH---IETA 317
V +LDG+ +++ D++ LWS+ L PE + H D+ R TA
Sbjct: 9 AQGPVLILDGALATELEARGC-DLND-SLWSAKVLLENPELIYQVHLDYFRAGADCAITA 66
Query: 318 ---ASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISS 374
A+ G G ++EA+ R +VE A ++ A KP +
Sbjct: 67 SYQATF--------QGFAARG-----LSEAEAEELIRRSVELAKEARDEFWAE-KPLV-- 110
Query: 375 QTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEK 434
A S+GPYG L DGSEY G Y ++E +L +HRP +EAL AG D LA ETIP
Sbjct: 111 --AGSVGPYGAYLADGSEYRGDY--GLSEEELQDFHRPRIEALAEAGADLLACETIPNLD 166
Query: 435 EALALVKLLR-EFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR 493
EA ALV+LL+ EFPG AWLSF+ +D TH S G ++ A LLA Q+ A+GVNC
Sbjct: 167 EAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAA--LLAASPQVVAVGVNCTA 224
Query: 494 PSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNI 553
P V+ + ++ + +VYPN G V+D+V W D+ S+ P+W G +
Sbjct: 225 PELVTAAIAALR-AVTDKPLVVYPNSGEVYDAVTKTWHGPADDASLGELAPEWYAAGARL 283
Query: 554 IGGCCEVTSYEIQQMR 569
IGGCC T +I +
Sbjct: 284 IGGCCRTTPEDIAALA 299
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase.
Length = 335
Score = 201 bits (513), Expect = 1e-59
Identities = 95/261 (36%), Positives = 136/261 (52%), Gaps = 14/261 (5%)
Query: 10 LDGSFTSQVSRHTIKDVD-GHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANV 68
+DG F +++ RH D PLWS+ L T P + H D++ AGADII ++ YQA +
Sbjct: 25 IDGGFATELERH---GADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATI 81
Query: 69 DNLTKLGYSEQEALDLLHKSVQLMNSAKDK--ENQTPDINLNKTFNLLTGHIETAASIGP 126
G S +E+ LL KSV++ A+D + L I AASIG
Sbjct: 82 QGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPILVAASIGS 141
Query: 127 YGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKL 186
YG L DGSEYSG Y S+T L +HR ++ L AG D +A ETIP + EA A V+L
Sbjct: 142 YGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVEL 201
Query: 187 LREFPGQK-AWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLV 245
L E + AW+SF+ KD + G+ + + + + ++ A+G+NC P + L+
Sbjct: 202 LEEENIKIPAWISFNSKDGVNVVSGDSLLECAS--IADSCKKVVAVGINCTPPRFIHGLI 259
Query: 246 RCIKQ--SHPTVQTIVYPNKG 264
I++ S P V VYPN G
Sbjct: 260 LSIRKVTSKPIV---VYPNSG 277
Score = 188 bits (479), Expect = 1e-54
Identities = 105/333 (31%), Positives = 157/333 (47%), Gaps = 42/333 (12%)
Query: 264 GVKLLDGSFTSQVSRHTIKDVD-GHPLWSSVYLTTEPEACVETHRDFIRGH---IETAA- 318
G ++DG F +++ RH D PLWS+ L T P + H D++ I TA+
Sbjct: 21 GCAVIDGGFATELERH---GADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASY 77
Query: 319 ------------SIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLA 366
S T+LR V+ EA I W + + R G
Sbjct: 78 QATIQGFESRGLSREESETLLRKS-------VEIACEARDIFWDKCQKGSTSRPG---RE 127
Query: 367 LIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLA 426
L I AASIG YG L DGSEYSG Y S+T L +HR ++ L AG D +A
Sbjct: 128 LSYRPI--LVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIA 185
Query: 427 LETIPAEKEALALVKLLREFPGQK-AWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ 485
ETIP + EA A V+LL E + AW+SF+ KD + G+ + + + + ++
Sbjct: 186 FETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECAS--IADSCKKVV 243
Query: 486 AIGVNCVRPSHVSTLVRCIKQ--SHPTVQTIVYPNKGGVWDSVHMKWLDTED--EYSILH 541
A+G+NC P + L+ I++ S P V VYPN G +D +W+++ + +
Sbjct: 244 AVGINCTPPRFIHGLILSIRKVTSKPIV---VYPNSGETYDGEAKEWVESTGVSDEDFVS 300
Query: 542 YVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIDE 574
YV +W + G ++IGGCC T I+ + + E
Sbjct: 301 YVNKWRDAGASLIGGCCRTTPNTIRAISKALSE 333
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase
(S-methylmethionine-dependent) [Amino acid transport and
metabolism].
Length = 300
Score = 180 bits (458), Expect = 3e-52
Identities = 107/310 (34%), Positives = 147/310 (47%), Gaps = 31/310 (10%)
Query: 265 VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIR--GHIETAASIGP 322
V +LDG +++ R D PLWS++ L EPE H DF+R I T A+
Sbjct: 10 VLILDGGLATELERRGCDLSD--PLWSALALVDEPEIVRNVHADFLRAGADIITTAT--- 64
Query: 323 YGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGP 382
Y + + ++E + R +VE L RA D +I A S+GP
Sbjct: 65 YQATPE-------GFAERVSEDEAKQLIRRSVE-LARAARDAYGEENQNI----AGSLGP 112
Query: 383 YGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKL 442
YG L D EY G Y ++ L +HRP +EAL AG D LA ET+P EA A+V+L
Sbjct: 113 YGAALAD--EYRGDY--GASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQL 168
Query: 443 LREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVR 502
++EF + AW+SF+ DDT G +S A +LA I A+GVNC P H+ +
Sbjct: 169 VQEF-SKPAWISFTLNDDTRLRDGTPLSEAAA--ILAGLPNIAALGVNCCHPDHIPAAIE 225
Query: 503 CIKQSHPTVQTIVYPNKGGVWDSVHMKWL---DTEDEYSILHYVPQWLEEGVNIIGGCCE 559
+ + IVYPN G +D W + D YS L W+E G IIGGCC
Sbjct: 226 ELSKLLTGKPIIVYPNSGEQYDPAGKTWHGPALSADSYSTL--AKSWVEAGARIIGGCCR 283
Query: 560 VTSYEIQQMR 569
I ++
Sbjct: 284 TGPAHIAEIA 293
Score = 170 bits (432), Expect = 2e-48
Identities = 97/258 (37%), Positives = 134/258 (51%), Gaps = 24/258 (9%)
Query: 7 VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQA 66
V +LDG +++ R D PLWS++ L EPE H DF+RAGADII ++ YQA
Sbjct: 10 VLILDGGLATELERRGCDLSD--PLWSALALVDEPEIVRNVHADFLRAGADIITTATYQA 67
Query: 67 NVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGP 126
+ + SE EA L+ +SV+L +A+D + A S+GP
Sbjct: 68 TPEGFAERV-SEDEAKQLIRRSVELARAARDA--------------YGEENQNIAGSLGP 112
Query: 127 YGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKL 186
YG L D EY G Y ++ L +HRP +EAL AG D LA ET+P EA A+V+L
Sbjct: 113 YGAALAD--EYRGDY--GASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQL 168
Query: 187 LREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVR 246
++EF + AW+SF+ DDT G +S A +LA I A+GVNC P H+ +
Sbjct: 169 VQEF-SKPAWISFTLNDDTRLRDGTPLSEAAA--ILAGLPNIAALGVNCCHPDHIPAAIE 225
Query: 247 CIKQSHPTVQTIVYPNKG 264
+ + IVYPN G
Sbjct: 226 ELSKLLTGKPIIVYPNSG 243
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase. This
is a family of related homocysteine S-methyltransferases
enzymes: 5-methyltetrahydrofolate--homocysteine
S-methyltransferases also known EC:2.1.1.13;
Betaine--homocysteine S-methyltransferase (vitamin B12
dependent), EC:2.1.1.5; and Homocysteine
S-methyltransferase, EC:2.1.1.10.
Length = 303
Score = 142 bits (361), Expect = 2e-38
Identities = 86/293 (29%), Positives = 125/293 (42%), Gaps = 27/293 (9%)
Query: 287 HPLWS----SVYLTTEPEACVETHRDFIRGH---IETAASIGPYGTVLRDGSEYSGHYVD 339
PLWS T+PE E H+ ++ IET Y ++Y ++
Sbjct: 21 DPLWSEGCNEELSITKPELIREIHKAYLEAGADIIETNT----YQATPIGFADYG---LE 73
Query: 340 SMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVD 399
+ +L R E A +Y + A SIGPYG DGSEY G+Y
Sbjct: 74 HLELRELN---RRAAEIARAAADEYGNTGDKRL---VAGSIGPYGAT-ADGSEYPGYYGV 126
Query: 400 SMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKD 459
S E L HRP +E L+ GVD L LETIP EA A V+ + E W+SF D
Sbjct: 127 SFEE--LKKAHRPQLEGLLDGGVDLLLLETIPDFLEAKAAVRAVEEVFEAPGWISFPVFD 184
Query: 460 DTHTSHG---ELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVY 516
G L + + + L + +I A+GVNC + + + VY
Sbjct: 185 SGTLVDGTGLTLSGATIEAALNSVQAEIDAVGVNCALGPDIMDEILELLSLTARKPLSVY 244
Query: 517 PNKGGVWDSVHMKWLDTEDEYS-ILHYVPQWLEEGVNIIGGCCEVTSYEIQQM 568
PN G +D+ ++ T DE + + +++ G IIGGCC T I+++
Sbjct: 245 PNSGEPYDAGKKEYDGTPDELAPSYWSLKEFVASGARIIGGCCGTTPDHIREI 297
Score = 142 bits (360), Expect = 3e-38
Identities = 80/252 (31%), Positives = 109/252 (43%), Gaps = 22/252 (8%)
Query: 29 HPLWS----SVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDL 84
PLWS T+PE E H+ ++ AGADII+++ YQA G E +L
Sbjct: 21 DPLWSEGCNEELSITKPELIREIHKAYLEAGADIIETNTYQATPIGFADYGLEHLELREL 80
Query: 85 LHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDS 144
++ ++ +A D+ T D A SIGPYG DGSEY G+Y S
Sbjct: 81 NRRAAEIARAAADEYGNTGD------------KRLVAGSIGPYGAT-ADGSEYPGYYGVS 127
Query: 145 MTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDD 204
E L HRP +E L+ GVD L LETIP EA A V+ + E W+SF D
Sbjct: 128 FEE--LKKAHRPQLEGLLDGGVDLLLLETIPDFLEAKAAVRAVEEVFEAPGWISFPVFDS 185
Query: 205 THTSHG---ELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYP 261
G L + + + L + +I A+GVNC + + + VYP
Sbjct: 186 GTLVDGTGLTLSGATIEAALNSVQAEIDAVGVNCALGPDIMDEILELLSLTARKPLSVYP 245
Query: 262 NKGVKLLDGSFT 273
N G G
Sbjct: 246 NSGEPYDAGKKE 257
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent),
methyltransferase domain [Amino acid transport and
metabolism].
Length = 311
Score = 70.0 bits (172), Expect = 4e-13
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 30/232 (12%)
Query: 39 TEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDK 98
T+P+ HR +I AGADII+++ + A L G E + ++ K+ ++ A D+
Sbjct: 50 TKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYG-LEDKVYEINQKAARIARRAADE 108
Query: 99 ENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNV 158
+ F A SIGP L S ++T +L+ +R V
Sbjct: 109 AG-----DPKPRF--------VAGSIGPTNKTL---SISPDF---AVTFDELVEAYREQV 149
Query: 159 EALVRAGVDYLALETIPAEKEALALVKLLREFPGQKA-----WLSFSCKDDTHTSHGELI 213
E L+ G D + +ETI A A V RE + +S + D T G+ I
Sbjct: 150 EGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTI 209
Query: 214 SSAVTSCLLANPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIVYPNKG 264
+ + S PD A+G+NC + P + +R + + VYPN G
Sbjct: 210 EAFLNSLEHLGPD---AVGLNCALGPDEMRPHLRELSR-IADAFVSVYPNAG 257
Score = 63.5 bits (155), Expect = 5e-11
Identities = 70/284 (24%), Positives = 109/284 (38%), Gaps = 38/284 (13%)
Query: 297 TEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYV---DSMTEADLIAWHRPN 353
T+P+ HR +I E A I T + + D E + ++
Sbjct: 50 TKPDVIEAIHRAYI----EAGADIIETNT-------FGATTIKLADYGLEDKVYEINQKA 98
Query: 354 VEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPN 413
+ R D KP A SIGP L S ++T +L+ +R
Sbjct: 99 AR-IARRAADEAGDPKPRF---VAGSIGPTNKTL---SISPDF---AVTFDELVEAYREQ 148
Query: 414 VEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKA-----WLSFSCKDDTHTSHGEL 468
VE L+ G D + +ETI A A V RE + +S + D T G+
Sbjct: 149 VEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQT 208
Query: 469 ISSAVTSCLLANPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIVYPNKG-GVWDSV 526
I + + S PD A+G+NC + P + +R + + VYPN G
Sbjct: 209 IEAFLNSLEHLGPD---AVGLNCALGPDEMRPHLRELSR-IADAFVSVYPNAGLPNAFGE 264
Query: 527 HMKWLDTEDEYSILHYVPQWLEEG-VNIIGGCCEVTSYEIQQMR 569
+ T + + + ++ EEG VNI+GGCC T I+ +
Sbjct: 265 RAVYDLTPEYMA--EALAEFAEEGGVNIVGGCCGTTPEHIRAIA 306
>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine
S-methyltransferase/5,10-methylenetetrahydrofolate
reductase protein; Reviewed.
Length = 612
Score = 70.6 bits (174), Expect = 9e-13
Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 41/231 (17%)
Query: 39 TEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDK 98
+ PE + HR++I AGAD+IQ++ + AN L + G ++ ++ +V+L A
Sbjct: 40 SHPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVK-EINRAAVRLAREAAGD 98
Query: 99 ENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNV 158
+ + A +IGP G G ++ ++ R +
Sbjct: 99 D----------VY--------VAGTIGPIGGRGPLG---------DISLEEIRREFREQI 131
Query: 159 EALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWL----SFSCKDDTHTSHGELIS 214
+AL+ GVD L LET +E L ++ RE K L + +D T +G +
Sbjct: 132 DALLEEGVDGLLLETFYDLEELLLALEAARE----KTDLPIIAQVAFHEDGVTQNGTSLE 187
Query: 215 SAVTSCLLANPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIVYPNKG 264
A+ L+A +G+NC + P H+ + I YPN G
Sbjct: 188 EALKE-LVAAG--ADVVGLNCGLGPYHMLEALERIPI-PENAPLSAYPNAG 234
Score = 66.8 bits (164), Expect = 2e-11
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 32/225 (14%)
Query: 354 VEALVRAGVDYLALIKPSISSQT--AASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHR 411
V+ + RA V LA + + A +IGP G G ++ ++ R
Sbjct: 81 VKEINRAAVR-LA--REAAGDDVYVAGTIGPIGGRGPLGD---------ISLEEIRREFR 128
Query: 412 PNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWL----SFSCKDDTHTSHGE 467
++AL+ GVD L LET +E L ++ RE K L + +D T +G
Sbjct: 129 EQIDALLEEGVDGLLLETFYDLEELLLALEAARE----KTDLPIIAQVAFHEDGVTQNGT 184
Query: 468 LISSAVTSCLLANPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSV 526
+ A+ L+A +G+NC + P H+ + I YPN G+ + V
Sbjct: 185 SLEEALKE-LVAAG--ADVVGLNCGLGPYHMLEALERIPI-PENAPLSAYPN-AGLPEYV 239
Query: 527 H--MKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMR 569
+ + ++ Y +++E+GV +IGGCC T I+ M
Sbjct: 240 DGRYVYSANPEYFA--EYALEFVEQGVRLIGGCCGTTPEHIRAMA 282
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
methyltransferase. This family represents
5-methyltetrahydrofolate--homocysteine methyltransferase
(EC 2.1.1.13), one of at least three different enzymes
able to convert homocysteine to methionine by
transferring a methyl group on to the sulfur atom. It is
also called the vitamin B12(or cobalamine)-dependent
methionine synthase. Other methionine synthases include
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase (MetE, EC 2.1.1.14, the
cobalamin-independent methionine synthase) and
betaine-homocysteine methyltransferase [Amino acid
biosynthesis, Aspartate family].
Length = 1178
Score = 56.7 bits (137), Expect = 2e-08
Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 17/230 (7%)
Query: 39 TEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDK 98
T+PE HR + AGADII+++ + + + + DL K +L + D+
Sbjct: 47 TKPEVIATIHRAYFEAGADIIETNTFNSTTISQADYDLEDL-IYDLNFKGAKLARAVADE 105
Query: 99 ENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNV 158
TP+ F A S+GP + ++T +L+ +
Sbjct: 106 FTLTPEK---PRF--------VAGSMGPTNKTATLSPDVERPGFRNVTYDELVDAYTEQA 154
Query: 159 EALVRAGVDYLALETIPAEKEA-LALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAV 217
+ L+ GVD L +ET A AL F + L + G +S
Sbjct: 155 KGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQT 214
Query: 218 TSCLLA--NPDQIQAIGVNC-VRPSHVSTLVRCIKQSHPTVQTIVYPNKG 264
L I IG+NC + P + ++ + + H +PN G
Sbjct: 215 IEAFLTSLEHAGIDMIGLNCALGPDEMRPHLKHLSE-HAEAYVSCHPNAG 263
Score = 51.7 bits (124), Expect = 9e-07
Identities = 72/333 (21%), Positives = 110/333 (33%), Gaps = 50/333 (15%)
Query: 261 PNKGVKLLDGSFTSQVSRHTIKDVD---GHPLWSSVY-------LTTEPEACVETHRDFI 310
N+ + +LDG+ +Q+ + + D T+PE HR +
Sbjct: 1 LNQRILVLDGAMGTQLQSANLTEADFRGAEFTCHRELKGNNDILNLTKPEVIATIHRAYF 60
Query: 311 RGHIETAASI---GPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLAL 367
E A I + + ++Y DLI L RA D L
Sbjct: 61 ----EAGADIIETNTFNSTTISQADYD--------LEDLIYDLNFKGAKLARAVADEFTL 108
Query: 368 IKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLAL 427
P A S+GP + ++T +L+ + + L+ GVD L +
Sbjct: 109 -TPEKPRFVAGSMGPTNKTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLI 167
Query: 428 ETIPAEKEA-LALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLA--NPDQI 484
ET A AL F + L + G +S L I
Sbjct: 168 ETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEHAGI 227
Query: 485 QAIGVNC------VRP--SHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDE 536
IG+NC +RP H+S HP PN G +D L ++
Sbjct: 228 DMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAG---LPNAFGEYD------LTPDEL 278
Query: 537 YSILHYVPQWLEEG-VNIIGGCCEVTSYEIQQM 568
L + EG +NI+GGCC T I+ +
Sbjct: 279 AKALA---DFAAEGGLNIVGGCCGTTPDHIRAI 308
>gnl|CDD|236045 PRK07534, PRK07534, methionine synthase I; Validated.
Length = 336
Score = 47.4 bits (113), Expect = 1e-05
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 30/156 (19%)
Query: 31 LWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQ 90
LW+ P+ H+ F+ AG+DII ++ + L KL ++ +L + +
Sbjct: 38 LWN----EDHPDNITALHQGFVDAGSDIILTNSFGGTAARL-KLHDAQDRVHELNRAAAE 92
Query: 91 LMNSAKDKENQTPDINLNKTFNLLTGH-IETAASIGPYGTVLRDGSEYSGHYVDSMTEAD 149
+ DK G + A S+GP G ++ + ++T A
Sbjct: 93 IAREVADK----------------AGRKVIVAGSVGPTGEIMEP--------MGALTHAL 128
Query: 150 LIAWHRPNVEALVRAGVDYLALETIPAEKEALALVK 185
+ E L G D L +ETI A +E A +
Sbjct: 129 AVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAE 164
Score = 42.0 bits (99), Expect = 5e-04
Identities = 56/216 (25%), Positives = 77/216 (35%), Gaps = 46/216 (21%)
Query: 376 TAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETI--PAE 433
A S+GP G ++ + ++T A + E L G D L +ETI P E
Sbjct: 107 VAGSVGPTGEIMEP--------MGALTHALAVEAFHEQAEGLKAGGADVLWVETISAPEE 158
Query: 434 KEALALVKLLREFPGQKAW---LSFSCKDDT--HTSHGELISSAVTSCLLANPDQIQAIG 488
A A L P W +SF DT T G L + + + + A G
Sbjct: 159 IRAAAEAAKLAGMP----WCGTMSF----DTAGRTMMG-LTPADLADLVEKLGEPPLAFG 209
Query: 489 VNC-VRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHY--VPQ 545
NC V S + V P I N G K++D +HY P+
Sbjct: 210 ANCGVGASDLLRTVLGFTAQGPERPIIAKGNAG------IPKYVDGH-----IHYDGTPE 258
Query: 546 WLEE--------GVNIIGGCCEVTSYEIQQMRIMID 573
+ E G IIGGCC + MR +D
Sbjct: 259 LMAEYAVLARDAGARIIGGCCGTMPEHLAAMRAALD 294
>gnl|CDD|236539 PRK09490, metH, B12-dependent methionine synthase; Provisional.
Length = 1229
Score = 37.9 bits (89), Expect = 0.016
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 27/96 (28%)
Query: 486 AIGVNC------VRPSHVSTLVRCIKQSHPTVQTIVYPNKG-----GVWDSVHMKWLDTE 534
+IG+NC +RP +V L R I ++ +PN G G +D +T
Sbjct: 245 SIGLNCALGADELRP-YVEELSR-IADTY----VSAHPNAGLPNAFGEYD-------ETP 291
Query: 535 DEYSILHYVPQWLEEG-VNIIGGCCEVTSYEIQQMR 569
+E + + ++ E G +NI+GGCC T I +
Sbjct: 292 EEMA--AQIGEFAESGFLNIVGGCCGTTPEHIAAIA 325
Score = 35.2 bits (82), Expect = 0.11
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 51/156 (32%)
Query: 39 TEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLH----KSVQLMNS 94
T+P+ HR ++ AGADII++ N N T + ++ L++ + +L
Sbjct: 62 TQPDVIEAIHRAYLEAGADIIET-----NTFNATTIAQADYGMESLVYELNFAAARLARE 116
Query: 95 AKDK-ENQTPDIN---------LNKTFNLLTGHIETAASIGP------YGTVLRDGSEYS 138
A D+ +TPD N+T ASI P + V D
Sbjct: 117 AADEWTAKTPDKPRFVAGVLGPTNRT-----------ASISPDVNDPGFRNVTFDE---- 161
Query: 139 GHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETI 174
V + E L+ G D + +ETI
Sbjct: 162 --LVAAYREQ---------TRGLIEGGADLILIETI 186
>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 33.8 bits (78), Expect = 0.26
Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 106 NLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGH----YVDSMTEADLIAWHRPNVEAL 161
+ F G I A G G V D Y G+ Y DSM +I R EA+
Sbjct: 343 DPLGNFLPSPGKITRYAPPGGPG-VRVDSGVYDGYRVPPYYDSMI-GKVIVHGRTRDEAI 400
Query: 162 VRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLS 198
R L + + LL+E +L+
Sbjct: 401 ARMRRALDELVIDGIK----TNIPLLQEILRDPDFLA 433
Score = 32.6 bits (75), Expect = 0.56
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 380 IGPYGTVLR-DGSEYSGH----YVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEK 434
P G +R D Y G+ Y DSM +I R EA+ R L +
Sbjct: 359 APPGGPGVRVDSGVYDGYRVPPYYDSMI-GKVIVHGRTRDEAIARMRRALDELVIDGIK- 416
Query: 435 EALALVKLLREFPGQKAWLS 454
+ LL+E +L+
Sbjct: 417 ---TNIPLLQEILRDPDFLA 433
Score = 29.2 bits (66), Expect = 7.7
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 320 IGPYGTVLR-DGSEYSGH----YVDSMTEADLIAWHRPNVEALVRAGVDYLALI 368
P G +R D Y G+ Y DSM +I R EA+ R L+
Sbjct: 359 APPGGPGVRVDSGVYDGYRVPPYYDSMI-GKVIVHGRTRDEAIARMRRALDELV 411
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 32.9 bits (75), Expect = 0.64
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 55 GADIIQSSCYQANVDNL--TKLGYSEQEALDLLHKSVQLMNSAKDKENQ-TPDINLNKTF 111
G DI+Q+ + A+ +L +LG QE + ++Q + +D N PD
Sbjct: 305 GIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPD------- 357
Query: 112 NLLTGHIETAASIGPYGTVLRDGSEYSG----HYVDSMTEADLIAW 153
TG IE S G +G L G+ Y+G Y DS+ + AW
Sbjct: 358 ---TGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLL-VKVSAW 399
>gnl|CDD|238116 cd00194, UBA, Ubiquitin Associated domain. The UBA domain is a
commonly occurring sequence motif in some members of
the ubiquitination pathway, UV excision repair
proteins, and certain protein kinases. Although its
specific role is so far unknown, it has been suggested
that UBA domains are involved in conferring protein
target specificity. The domain, a compact three helix
bundle, has a conserved GFP-loop and the proline is
thought to be critical for binding. The UBA domain is
distinct from the conserved three helical domain seen
in the N-terminus of EF-TS and eukaryotic NAC proteins.
Length = 38
Score = 28.6 bits (65), Expect = 0.66
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 64 YQANVDNLTKLGYSEQEALDLLHKS 88
+ ++ L ++G+S +EA L +
Sbjct: 1 DEEKLEQLLEMGFSREEARKALRAT 25
>gnl|CDD|197551 smart00165, UBA, Ubiquitin associated domain. Present in Rad23,
SNF1-like kinases. The newly-found UBA in p62 is known
to bind ubiquitin.
Length = 37
Score = 28.2 bits (64), Expect = 0.83
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 64 YQANVDNLTKLGYSEQEALDLLHKS 88
+ +D L ++G+S +EAL L +
Sbjct: 1 DEEKIDQLLEMGFSREEALKALRAA 25
>gnl|CDD|118685 pfam10157, DUF2365, Uncharacterized conserved protein (DUF2365).
This is a family of conserved proteins found from
nematodes to humans. The function is unknown.
Length = 149
Score = 30.5 bits (69), Expect = 1.2
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 66 ANVDNLTK-LGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASI 124
+VDNL + LG L +VQ +A DK T D N+ + LL E S+
Sbjct: 66 NSVDNLLENLGGLLHSISSLTADNVQTYRNAVDKLTDTVDANIKCMYTLLAKCEEITKSM 125
Query: 125 GP 126
P
Sbjct: 126 KP 127
>gnl|CDD|200522 cd11261, Sema_4F, The Sema domain, a protein interacting module, of
semaphorin 4F (Sema4F). Sema4F plays role in
heterotypic cell-cell contacts and controls cell
proliferation and suppresses tumorigenesis. In
neurofibromatosis type 1 (NF1) patients, reduced Sema4F
level disrupts Schwann cell/axonal interactions.
Experiments using a yeast two-hybrid system show that
the extreme C-terminus of Sema4F interacts with the PDZ
domains of post-synaptic density protein SAP90/PSD-95,
indicating possible functional involvement of Semas4F at
glutamatergic synapses. Recent work also suggests a role
for Sema4F in the injury response of intramedullary
axotomized motoneuron. Sema4F belongs to the class 4
transmembrane semaphorin family of proteins. Semaphorins
are regulator molecules involved in the development of
the nervous system and in axonal guidance. They also
play important roles in other biological processes, such
as angiogenesis, immune regulation, respiration systems
and cancer. The Sema domain is located at the N-terminus
and contains four disulfide bonds formed by eight
conserved cysteine residues. It serves as a
receptor-recognition and -binding module.
Length = 460
Score = 31.4 bits (71), Expect = 1.3
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 222 LANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTS--QVSRH 279
+ N ++ G + P V T VR HP + V+P G LL + T+ +V+ H
Sbjct: 334 ITNNMKLLGFGSSLSLPDRVLTFVR----DHPLMDRPVFPADGHPLLVTTDTAYLRVAAH 389
Query: 280 TIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYGTVLRD 329
+ + G + +YL TE GH+ A IG +VL D
Sbjct: 390 RVTSLSGKE-YDVLYLGTED------------GHLHRAVRIGAQLSVLED 426
>gnl|CDD|184936 PRK14973, PRK14973, DNA topoisomerase I; Provisional.
Length = 936
Score = 31.4 bits (71), Expect = 1.6
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 66 ANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIG 125
A+ +L K G SE EA LL ++ L N ++ KE P ++L K E S+
Sbjct: 774 ADPADLKKAGLSEAEAASLLAEAKSLCNISRLKEIGVPAVSLKKYQEAGFDTPEDFCSVH 833
Query: 126 PYGTVLRDG--SEYSGHYVDSMTEADLIAWHRPNVEALVRA 164
P L+ G E + + E RP E + +A
Sbjct: 834 PAYLALKTGISPETICRHAKLVCE----KLGRPVPEKISKA 870
>gnl|CDD|182614 PRK10645, PRK10645, divalent-cation tolerance protein CutA;
Provisional.
Length = 112
Score = 28.2 bits (63), Expect = 4.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 495 SHVSTLVRCIKQSHP--TVQTIVYPNKGGVWDSVHMKWLD 532
SH L+ C+K HP T + +V P G D+ ++ WL+
Sbjct: 71 SHQQALLECLKSHHPYQTPELLVLPVTHG--DTDYLSWLN 108
>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily.
The DRE-TIM metallolyase superfamily includes
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 265
Score = 29.3 bits (67), Expect = 4.7
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 129 TVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYL 169
T LRDG + G + + D + EAL AGVD +
Sbjct: 3 TTLRDGLQSEGA---TFSTEDKLEI----AEALDEAGVDSI 36
Score = 29.3 bits (67), Expect = 4.7
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 325 TVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYL 365
T LRDG + G + + D + EAL AGVD +
Sbjct: 3 TTLRDGLQSEGA---TFSTEDKLEI----AEALDEAGVDSI 36
Score = 29.3 bits (67), Expect = 4.7
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 385 TVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYL 425
T LRDG + G + + D + EAL AGVD +
Sbjct: 3 TTLRDGLQSEGA---TFSTEDKLEI----AEALDEAGVDSI 36
>gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and
Dihydropyrimidine dehydrogenase (DHPD) FMN-binding
domain. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively.
DHPD catalyzes the first step in pyrimidine degradation:
the NADPH-dependent reduction of uracil and thymine to
the corresponding 5,6-dihydropyrimidines. DHPD contains
two FAD, two FMN and eight [4Fe-4S] clusters, arranged
in two electron transfer chains that pass its
homodimeric interface twice. Two of the Fe-S clusters
show a hitherto unobserved coordination involving a
glutamine residue.
Length = 289
Score = 28.9 bits (65), Expect = 8.0
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 22 TIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEA 81
K+ G PL +SV + E VE R RAGA ++ + NV +LG +
Sbjct: 92 AKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAV 150
Query: 82 LDLLHKSVQ 90
+LL
Sbjct: 151 ANLLKAVKA 159
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 29.3 bits (66), Expect = 8.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 238 PSHVSTLVRCIKQSHPTVQ 256
PS + LVRC+ + HP VQ
Sbjct: 830 PSSLEPLVRCLAEGHPLVQ 848
Score = 29.3 bits (66), Expect = 8.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 494 PSHVSTLVRCIKQSHPTVQ 512
PS + LVRC+ + HP VQ
Sbjct: 830 PSSLEPLVRCLAEGHPLVQ 848
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 28.8 bits (65), Expect = 8.6
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 300 EACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEA 356
EACV D RG ET ++ VLR TE ++IAW R ++ A
Sbjct: 466 EACVIATPDPRRG--ETVKAV----VVLRP------EARGKTTEEEIIAWAREHMAA 510
>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 1
[Coenzyme metabolism].
Length = 263
Score = 28.4 bits (64), Expect = 9.2
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 23/101 (22%)
Query: 354 VEALVRAGVDYLALIKP------SISSQTAASIGPYGT----VLRDGSEYSGHYVDSMTE 403
VEAL R+G+ + LI + + Q A +G G V+++ E
Sbjct: 46 VEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKE------RIKQINPE 99
Query: 404 ADLIA----WHRPNVEALVRAGVDYL--ALETIPAEKEALA 438
++ A N+E L+ G DY+ A++++ A K AL
Sbjct: 100 CEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRA-KVALI 139
>gnl|CDD|240083 cd04732, HisA, HisA. Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase catalyzes
the fourth step in histidine biosynthesis, an
isomerisation of the aminoaldose moiety of ProFAR to the
aminoketose of PRFAR
(N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-
phospho-ribosyl)-4-imidazolecarboxamide). In bacteria
and archaea, ProFAR isomerase is encoded by the HisA
gene.
Length = 234
Score = 28.2 bits (64), Expect = 9.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 158 VEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAV 217
+E L+ GV + + T + L + +LL+E+ G++ + KD + G L +S V
Sbjct: 88 IERLLDLGVSRVIIGTAAVKNPEL-VKELLKEYGGERIVVGLDAKDGKVATKGWLETSEV 146
Query: 218 T 218
+
Sbjct: 147 S 147
Score = 28.2 bits (64), Expect = 9.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 414 VEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAV 473
+E L+ GV + + T + L + +LL+E+ G++ + KD + G L +S V
Sbjct: 88 IERLLDLGVSRVIIGTAAVKNPEL-VKELLKEYGGERIVVGLDAKDGKVATKGWLETSEV 146
Query: 474 T 474
+
Sbjct: 147 S 147
>gnl|CDD|234660 PRK00139, murE,
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; Provisional.
Length = 460
Score = 28.6 bits (65), Expect = 9.5
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 119 ETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE 172
E A IG G + SG T D + R + LV AGV Y A+E
Sbjct: 122 EKTALIGTLGNGIGGELIPSGL-----TTPDALDLQR-LLAELVDAGVTYAAME 169
Score = 28.6 bits (65), Expect = 9.8
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 375 QTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALE 428
+ A IG G + SG T D + R + LV AGV Y A+E
Sbjct: 122 EKTALIGTLGNGIGGELIPSGL-----TTPDALDLQR-LLAELVDAGVTYAAME 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.398
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,136,503
Number of extensions: 2804075
Number of successful extensions: 3067
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3021
Number of HSP's successfully gapped: 50
Length of query: 581
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 479
Effective length of database: 6,413,494
Effective search space: 3072063626
Effective search space used: 3072063626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)