RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15811
(581 letters)
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase
MetH, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 300
Score = 96.6 bits (239), Expect = 9e-23
Identities = 54/312 (17%), Positives = 96/312 (30%), Gaps = 35/312 (11%)
Query: 262 NKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIG 321
++ V LLDG++ ++ ++ G+ P+ ++ HR +I + +
Sbjct: 12 SERVLLLDGAYGTEFMKY------GYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNT 65
Query: 322 PYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIG 381
+G R G + + IG
Sbjct: 66 -FGAT-RMKLRKHGLEDKLDPIVRNAVRIA----------------RRAAGEKLVFGDIG 107
Query: 382 PYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVK 441
P G + + S + R VE +V GVD + ET E A V
Sbjct: 108 PTG--------ELPYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVL 159
Query: 442 LLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLV 501
RE ++ D+ S + + + I A+G+NC +
Sbjct: 160 AAREVSRDVFLIAHMTFDEKGRSLT--GTDPANFAITFDELDIDALGINCSLGPEEILPI 217
Query: 502 RCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVT 561
+ +V PN G + ++ + E GVNI GGCC T
Sbjct: 218 FQELSQYTDKFLVVEPNAGKPIVENGKTVYPLKPHD-FAVHIDSYYELGVNIFGGCCGTT 276
Query: 562 SYEIQQMRIMID 573
++ R ++
Sbjct: 277 PEHVKLFRKVLG 288
Score = 80.4 bits (197), Expect = 3e-17
Identities = 49/268 (18%), Positives = 95/268 (35%), Gaps = 36/268 (13%)
Query: 6 KVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQ 65
+V LLDG++ ++ ++ G+ P+ ++ HR +I +G+D+I ++ +
Sbjct: 14 RVLLLDGAYGTEFMKY------GYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFG 67
Query: 66 ANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIG 125
A L K G E + ++ +V++ A ++ DI
Sbjct: 68 ATRMKLRKHGL-EDKLDPIVRNAVRIARRAAGEKLVFGDIG------------------- 107
Query: 126 PYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVK 185
+ + + S + R VE +V GVD + ET E A V
Sbjct: 108 --------PTGELPYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVL 159
Query: 186 LLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLV 245
RE ++ D+ S + + + I A+G+NC +
Sbjct: 160 AAREVSRDVFLIAHMTFDEKGRSLT--GTDPANFAITFDELDIDALGINCSLGPEEILPI 217
Query: 246 RCIKQSHPTVQTIVYPNKGVKLLDGSFT 273
+ +V PN G +++ T
Sbjct: 218 FQELSQYTDKFLVVEPNAGKPIVENGKT 245
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 361
Score = 88.4 bits (218), Expect = 1e-19
Identities = 44/323 (13%), Positives = 96/323 (29%), Gaps = 45/323 (13%)
Query: 262 NKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGH---IETAA 318
+ + DG F + + W+ PEA + HR+F+R ++T
Sbjct: 9 AGEIVIGDGGFVFALEKRGYVKAG---PWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFT 65
Query: 319 SIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAA 378
+ D + + + + + A D + + A
Sbjct: 66 --------------FYASE-DKLENRGNYVLEKISGQEVNEAAADIARQVADEGDALVAG 110
Query: 379 SIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALA 438
+ + Y+ + +E ++ +E ++ VD+L E +EA+
Sbjct: 111 GVSQTPS-----------YLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVW 159
Query: 439 LVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN-CVRPSHV 497
V+ L + + + + +AV + + V
Sbjct: 160 AVETLIASG-KPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKTV 218
Query: 498 STLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTED-----------EYSILHYVPQW 546
+ ++ + + P D+ ++D + + I Y +
Sbjct: 219 KLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREA 278
Query: 547 LEEGVNIIGGCCEVTSYEIQQMR 569
GV IGGCC Y I+ +
Sbjct: 279 YNLGVRYIGGCCGFEPYHIRAIA 301
Score = 77.7 bits (190), Expect = 5e-16
Identities = 40/258 (15%), Positives = 84/258 (32%), Gaps = 30/258 (11%)
Query: 6 KVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQ 65
++ + DG F + + W+ PEA + HR+F+RAG++++Q+ +
Sbjct: 11 EIVIGDGGFVFALEKRGYVKAG---PWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFY 67
Query: 66 ANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIG 125
A+ D L G E S Q +N A + G A +
Sbjct: 68 ASEDKLENRGNYVLE-----KISGQEVNEAAADIARQVADE---------GDALVAGGVS 113
Query: 126 PYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVK 185
+ Y+ + +E ++ +E ++ VD+L E +EA+ V+
Sbjct: 114 QTPS-----------YLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVE 162
Query: 186 LLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVN-CVRPSHVSTL 244
L + + + + +AV + + V +
Sbjct: 163 TLIASG-KPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKTVKLM 221
Query: 245 VRCIKQSHPTVQTIVYPN 262
++ + + P
Sbjct: 222 KEGLEAAQLKAHLMSQPL 239
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
catalytic domain {Pseudomonas sp. [TaxId: 306]}
Length = 289
Score = 33.8 bits (76), Expect = 0.042
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 325 TVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYG 384
LRDGS H T D+ A AL +A VD + + ++ + G
Sbjct: 13 VTLRDGSHAIRH---QYTLDDVRAI----ARALDKAKVDSIEVAHGDGLQGSSFNYGFGR 65
Query: 385 TVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRA 420
+ E + A L+ +V L A
Sbjct: 66 HTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNA 101
>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
catalytic domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 310
Score = 29.2 bits (64), Expect = 1.3
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 325 TVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASI 380
LRDG++ M+ A + LVR G + + PS S +
Sbjct: 17 VDLRDGNQALID---PMSPARKRRM----FDLLVRMGYKEIEVGFPSASQTDFDFV 65
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein
1 (Tip47), C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 226
Score = 29.1 bits (65), Expect = 1.4
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 48 HRDFIRAG--ADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTP 103
F+R G ++ +++ Y+ ++ L QE L L + LM S K +Q
Sbjct: 32 QNYFVRLGSLSERLRNHAYEHSLGKLQNARQKAQETLQQLTSVLGLMESVKQGVDQRL 89
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId:
51453]}
Length = 344
Score = 28.4 bits (62), Expect = 2.8
Identities = 9/77 (11%), Positives = 21/77 (27%)
Query: 482 DQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILH 541
I + G+ VR + + Q + + ++ LD + + H
Sbjct: 43 SHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQH 102
Query: 542 YVPQWLEEGVNIIGGCC 558
+ + N
Sbjct: 103 NLKLIIPFVNNWSDYGG 119
>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC
{Salmonella typhimurium [TaxId: 90371]}
Length = 186
Score = 27.8 bits (61), Expect = 3.0
Identities = 12/79 (15%), Positives = 20/79 (25%)
Query: 187 LREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVR 246
++ G+ + F D T S EL A L +H +
Sbjct: 25 EKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSS 84
Query: 247 CIKQSHPTVQTIVYPNKGV 265
+ I P +
Sbjct: 85 SETIAKIKYAMIGDPTGAL 103
Score = 27.1 bits (59), Expect = 4.2
Identities = 12/77 (15%), Positives = 19/77 (24%)
Query: 443 LREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVR 502
++ G+ + F D T S EL A L +H +
Sbjct: 25 EKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSS 84
Query: 503 CIKQSHPTVQTIVYPNK 519
+ I P
Sbjct: 85 SETIAKIKYAMIGDPTG 101
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 25.5 bits (56), Expect = 6.1
Identities = 4/40 (10%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 143 DSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALA 182
+ + E + W+ V +++ A +
Sbjct: 14 EGIREVTVKEWYV-KEGDTVSQFDSICEVQSDKASVTITS 52
Score = 25.5 bits (56), Expect = 6.1
Identities = 4/40 (10%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 399 DSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALA 438
+ + E + W+ V +++ A +
Sbjct: 14 EGIREVTVKEWYV-KEGDTVSQFDSICEVQSDKASVTITS 52
>d2pw4a1 d.380.1.1 (A:1-184) Uncharacterized protein Jann2411
{Jannaschia sp. ccs1 [TaxId: 290400]}
Length = 184
Score = 26.1 bits (57), Expect = 9.5
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 352 PNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWH- 410
+R +D + + P T + G L D + V + + + +
Sbjct: 5 SYERTGLRVSLDLVNIATPGSRRGTPHTGGCVIEDLHDLLKDDPASVAQLGDDHVEGFVE 64
Query: 411 -RPNVEALVRAGVDYLALETIPAEKEALALV-KLLREFPG 448
+ + A + A + LLR+ P
Sbjct: 65 LARLLHTAIDALSN-------GQVATAATALNHLLRKHPA 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.398
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,163,954
Number of extensions: 99585
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 20
Length of query: 581
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 491
Effective length of database: 1,171,896
Effective search space: 575400936
Effective search space used: 575400936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)