BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15814
         (224 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
          Length = 101

 Score = 31.2 bits (69), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 68  SFWLDRQIRAIPSHPGYLVYLPSTLYAALVYLMNMYYRELA 108
           ++   + I   P  PG   + P+T+ A   Y+MN+YY+   
Sbjct: 30  NYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70


>pdb|2V27|A Chain A, Structure Of The Cold Active Phenylalanine Hydroxylase
           From Colwellia Psychrerythraea 34h
 pdb|2V27|B Chain B, Structure Of The Cold Active Phenylalanine Hydroxylase
           From Colwellia Psychrerythraea 34h
          Length = 275

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 173 VNNFMSLFYVAFYIQDLEMLRTGTYDDYLELFIQFGYVYLFSAVFPMANTNL 224
           ++    ++Y+   + DL+ +R    DD +EL  Q   + L  A FP+   +L
Sbjct: 217 IDIMQPIYYMLTKVSDLDEIRKFEVDDIMELVAQAEALGLHEAKFPVKKASL 268


>pdb|2V28|A Chain A, Apo Structure Of The Cold Active Phenylalanine Hydroxylase
           From Colwellia Psychrerythraea 34h
 pdb|2V28|B Chain B, Apo Structure Of The Cold Active Phenylalanine Hydroxylase
           From Colwellia Psychrerythraea 34h
          Length = 267

 Score = 28.1 bits (61), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 173 VNNFMSLFYVAFYIQDLEMLRTGTYDDYLELFIQFGYVYLFSAVFPMANTN 223
           ++    ++Y+   + DL+ +R    DD +EL  Q   + L  A FP+   +
Sbjct: 217 IDIMQPIYYMLTKVSDLDEIRKFEVDDIMELVAQAEALGLHEAKFPVKKAS 267


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.143    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,595,769
Number of Sequences: 62578
Number of extensions: 251126
Number of successful extensions: 637
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 8
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)