Query psy15814
Match_columns 224
No_of_seqs 137 out of 687
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 22:01:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2513|consensus 100.0 1.2E-51 2.5E-56 380.1 7.1 209 1-223 233-500 (647)
2 PF04547 Anoctamin: Calcium-ac 100.0 9.7E-51 2.1E-55 375.3 7.8 205 4-223 86-341 (452)
3 KOG2514|consensus 100.0 1.1E-36 2.5E-41 288.2 3.1 206 5-223 351-621 (861)
4 PF02714 DUF221: Domain of unk 97.0 0.0032 6.9E-08 55.8 8.2 58 88-145 104-161 (325)
5 KOG2513|consensus 87.5 5.3 0.00011 38.7 9.8 102 85-190 272-380 (647)
6 PF02532 PsbI: Photosystem II 70.9 8 0.00017 23.1 3.3 28 127-154 2-29 (36)
7 PF08793 2C_adapt: 2-cysteine 68.4 1.8 3.9E-05 26.2 0.2 28 11-38 5-33 (37)
8 PF04547 Anoctamin: Calcium-ac 65.9 54 0.0012 30.4 9.6 42 146-187 184-228 (452)
9 PRK02655 psbI photosystem II r 51.2 4 8.7E-05 24.6 -0.4 27 127-153 2-28 (38)
10 KOG1134|consensus 47.9 34 0.00074 34.2 5.2 56 86-145 412-467 (728)
11 CHL00024 psbI photosystem II p 47.5 5 0.00011 24.0 -0.4 27 127-153 2-28 (36)
12 COG5594 Uncharacterized integr 46.6 6 0.00013 39.5 -0.2 58 86-147 466-523 (827)
13 PF04745 Pox_A8: VITF-3 subuni 30.4 1.5E+02 0.0033 25.9 5.7 53 80-132 201-253 (288)
14 PF08106 Antimicrobial11: Form 25.3 44 0.00095 16.1 0.9 12 17-28 2-13 (16)
No 1
>KOG2513|consensus
Probab=100.00 E-value=1.2e-51 Score=380.08 Aligned_cols=209 Identities=38% Similarity=0.731 Sum_probs=192.9
Q ss_pred CCCCCCCCCCcccccCCCcccccccccCCccccchhceEeeeecceeeecchhhHHHHHHHHHHHHhhhhhhhhcccccC
Q psy15814 1 MTSLDDTPRPTFHGKMGEDTVTGKMQPQYPAWKTYTKMYCVSFPLMYCVSFPLVGVCMLGAFLIMLSSFWLDRQIRAIPS 80 (224)
Q Consensus 1 ~~~~~e~~Rp~f~g~~~~~piTg~~e~~~p~~kr~~~~~~~s~~~~~~~~~~vv~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
|++..|+|||+|.|+.+.|++||+.|||||.|+|.+++|++|+ |++++|+.++..+|+++|.++. ++.+.
T Consensus 233 ~~e~~~~prp~~~g~~~~n~itgk~e~~yp~w~~~~~~~~vsv--------Pv~l~c~~i~l~f~l~~f~ie~--~~~s~ 302 (647)
T KOG2513|consen 233 SKELSEEPRPEFLGVLRINSITGKAEPYYPEWKRILRRYLVSV--------PVILLCLCILLSFMLYCFQIEV--WVLSD 302 (647)
T ss_pred hhhhhcCCCchhccccccCccccccCccccHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3567899999999999999999999999999999999999999 9999999988889999998887 77666
Q ss_pred CC----ceEEEcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhhhHHHHHhhHHHHHHHHHhhhhhhhh
Q psy15814 81 HP----GYLVYLPSTLYAALVYLMNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNFMSLFYVAFYIQDLEML 156 (224)
Q Consensus 81 ~~----~~~~~~~svl~~v~I~~l~~iY~~~a~~Lt~~Enhrt~~~ye~sli~K~f~f~fvn~~~~LfyiAF~~~~~~~l 156 (224)
+. ++++++|+++.+++|.+++.+|+++|+|||||||||++++|++|++.|+++|+|+|+|.|+|||||+++|++.+
T Consensus 303 ~~~~~~sils~lP~iv~~~li~~~t~~Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~d~~~L 382 (647)
T KOG2513|consen 303 YGGPLISILSYLPTIVYAVLIPVLTRIYKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLRDMELL 382 (647)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 52 56788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhhhhhHHHHHhhHHHHHHHHHhhhhhh----h-------------h----------------h----------
Q psy15814 157 RTFDRYRITKLVLFEFVNNFMSLFYVAFYIQDLE----M-------------L----------------R---------- 193 (224)
Q Consensus 157 ~~~~~~L~~~~~~~q~~~~~~e~~~iP~~~~~~~----~-------------~----------------~---------- 193 (224)
+++ ++++++++|++++.+|.. .|+++.+++ . . |
T Consensus 383 k~~---l~~~li~sQ~l~~~~e~~-~p~f~~~~~r~~~~~~f~t~~~ae~~~s~~~~i~~~~~~~~~~s~~~~a~~~~~~ 458 (647)
T KOG2513|consen 383 KQQ---LATLLITSQSLLNLMEIA-LPYFKIRTKRYENYIRFRTKSFAEELASAQAKIDGESPGFPAPSREPEAQLFPSL 458 (647)
T ss_pred HHH---HHHHHHHHHHHHHHHhhc-chHHHHhhhhhhhhhhHHHHHHHHhhccchhhhcccccCCCCcccccchhhcccc
Confidence 999 999999999999999999 998885432 0 0 0
Q ss_pred ------------cCchhHHHHHHHHhceeeEeeccccccCCC
Q psy15814 194 ------------TGTYDDYLELFIQFGYVYLFSAVFPMANTN 223 (224)
Q Consensus 194 ------------~~~~~dy~E~~iQfG~vtlF~~afPlap~~ 223 (224)
||+||||+||++||||++||++||||||++
T Consensus 459 ~qa~~E~~~~~ydgtf~Dylel~lQFGyvVlFS~~~PLA~~~ 500 (647)
T KOG2513|consen 459 KQAELESGLAEYDGTFDDYLELLLQFGYVVLFSCAFPLAAIF 500 (647)
T ss_pred hhhhhcchhhhhcchhHHHHHHHHHhhHHHHHHhHhhHHHHH
Confidence 679999999999999999999999999975
No 2
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=100.00 E-value=9.7e-51 Score=375.26 Aligned_cols=205 Identities=38% Similarity=0.694 Sum_probs=182.3
Q ss_pred CCCCCCCccccc-CCCcccccccccCCccccchhceEeeeecceeeecchhhHHHHHHHHHHHHhhhhhhhhcccccCCC
Q psy15814 4 LDDTPRPTFHGK-MGEDTVTGKMQPQYPAWKTYTKMYCVSFPLMYCVSFPLVGVCMLGAFLIMLSSFWLDRQIRAIPSHP 82 (224)
Q Consensus 4 ~~e~~Rp~f~g~-~~~~piTg~~e~~~p~~kr~~~~~~~s~~~~~~~~~~vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (224)
..|++||+|+|+ .+.||+||+.|+++|+|+|..|. ++|. |++++++++++..++++++.+. ++.+.+.
T Consensus 86 ~~e~~r~~f~g~~~~~~~vtg~~~~~~p~~~r~~r~-~~s~--------~ivl~~i~i~~~~~~~~~~~~~--~~~~~~~ 154 (452)
T PF04547_consen 86 EEEEPRPEFKGQPIRIDPVTGEMEPYYPPWKRILRY-LVSV--------PIVLLFILIVIGIVIGVFYLRI--YLTEIYS 154 (452)
T ss_pred hhhccchhhccccccccccCCCCccCCcHHHHhhhh-hhhH--------HHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 457899999995 57999999999999999999998 8888 8888888877777888887776 4443332
Q ss_pred -----ceEEEcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhhhHHHHHhhHHHHHHHHHhhh------
Q psy15814 83 -----GYLVYLPSTLYAALVYLMNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNFMSLFYVAFYIQ------ 151 (224)
Q Consensus 83 -----~~~~~~~svl~~v~I~~l~~iY~~~a~~Lt~~Enhrt~~~ye~sli~K~f~f~fvn~~~~LfyiAF~~~------ 151 (224)
.+.+.+|+++|+++|.++|.+|+++|++|||||||||+++||+|++.|+|+|+|+|+|+++||+||+++
T Consensus 155 ~~~~~~~~~~~~~vl~~v~i~il~~iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~LfyiaF~~~~~~~~~ 234 (452)
T PF04547_consen 155 GPGKQFLASLIPTVLNAVVILILNFIYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYIAFFYGVRQEEC 234 (452)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 234778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --hhhhhhhcccchhhhhhHHHHHhhHHHHHHHHHhhhhhhh----------h----h---------------------c
Q psy15814 152 --DLEMLRTFDRYRITKLVLFEFVNNFMSLFYVAFYIQDLEM----------L----R---------------------T 194 (224)
Q Consensus 152 --~~~~l~~~~~~L~~~~~~~q~~~~~~e~~~iP~~~~~~~~----------~----~---------------------~ 194 (224)
+..+++.| +.++++++|+++|+.|.+ +|+++++.+. . + +
T Consensus 235 ~~~~~~L~~q---l~~~~~~~qi~~~~~e~~-~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~ 310 (452)
T PF04547_consen 235 QPCLSRLRIQ---LFTIMVTKQIINNLLEVV-LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYD 310 (452)
T ss_pred CCCHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCC
Confidence 99999999 999999999999999999 9998864320 0 0 3
Q ss_pred --CchhHHHHHHHHhceeeEeeccccccCCC
Q psy15814 195 --GTYDDYLELFIQFGYVYLFSAVFPMANTN 223 (224)
Q Consensus 195 --~~~~dy~E~~iQfG~vtlF~~afPlap~~ 223 (224)
|++|||+||++||||+|||++||||||++
T Consensus 311 ~~g~~~dY~emviQFGyv~lF~~afPlapl~ 341 (452)
T PF04547_consen 311 PDGLFDDYLEMVIQFGYVTLFSAAFPLAPLF 341 (452)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999975
No 3
>KOG2514|consensus
Probab=100.00 E-value=1.1e-36 Score=288.19 Aligned_cols=206 Identities=29% Similarity=0.412 Sum_probs=153.5
Q ss_pred CCCCCC-cccccCCCccccc-ccccCCccccchhceEeeeecceeeecchhhHHHHHHHHH---HHHhhhhhh-hh--c-
Q psy15814 5 DDTPRP-TFHGKMGEDTVTG-KMQPQYPAWKTYTKMYCVSFPLMYCVSFPLVGVCMLGAFL---IMLSSFWLD-RQ--I- 75 (224)
Q Consensus 5 ~e~~Rp-~f~g~~~~~piTg-~~e~~~p~~kr~~~~~~~s~~~~~~~~~~vv~l~~~~~~~---~~~~~~~~~-~~--~- 75 (224)
.|+.|| +|+.+...+++|+ +.+++-|.+-|..+. +.|. ..++.++++++. .++++++.. .. .
T Consensus 351 ~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-l~~~--------~~v~f~iav~~~~~l~V~lyri~~~~a~~~~ 421 (861)
T KOG2514|consen 351 EEEDRPEQFEAKYETDPITNEEDEPISPWRDRYIAM-LASF--------SFVLFMIAVVFSAVLGVILYRISMVAALQCG 421 (861)
T ss_pred cccccchhhhhhheeecccCCCCcccCcHHHHhHHH-HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455555 6777788899998 556666555555544 6665 222222221111 112222211 10 0
Q ss_pred ccccCC-CceEEEcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhhhHHHHHhhHHHHHHHHHhhhhh-
Q psy15814 76 RAIPSH-PGYLVYLPSTLYAALVYLMNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNFMSLFYVAFYIQDL- 153 (224)
Q Consensus 76 ~~~~~~-~~~~~~~~svl~~v~I~~l~~iY~~~a~~Lt~~Enhrt~~~ye~sli~K~f~f~fvn~~~~LfyiAF~~~~~- 153 (224)
.....+ ....+.+++.+|.++++.+|.+|.++|.+||++|||||+++||||++.|+|+|||+|.|+|+||+||++|++
T Consensus 422 ~~~~~~~~~~at~~a~~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~yssifYVAFfkg~fv 501 (861)
T KOG2514|consen 422 KFTTSHAWLSATATAVIINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYYSSIFYIAFFKGRFV 501 (861)
T ss_pred ccceehhhhHhHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhcCceEEEEEEeceec
Confidence 111112 233566788899999999999999999999999999999999999999999999999999999999999986
Q ss_pred ------------------------hhhhhcccchhhhhhHHHHHhhHHHHHHHHHhhhhhh---hh--------------
Q psy15814 154 ------------------------EMLRTFDRYRITKLVLFEFVNNFMSLFYVAFYIQDLE---ML-------------- 192 (224)
Q Consensus 154 ------------------------~~l~~~~~~L~~~~~~~q~~~~~~e~~~iP~~~~~~~---~~-------------- 192 (224)
.+++.| |.++|+++|+.||+.|.+ +|++.+.++ .+
T Consensus 502 g~pg~~~~~f~~~r~eeC~p~gCl~eLciQ---l~iimlgKq~~nn~~ev~-~P~f~~~~~~~~~~~~s~~~~~~~~~~~ 577 (861)
T KOG2514|consen 502 GYPGDYVYLFGRYRNEECDPGGCLSELCIQ---LAIIMLGKQIWNNFMEVG-LPKFWKLIRQYKLKTEARVTIDDDSANV 577 (861)
T ss_pred cCCCCcceecccceeccccccchHHHHHHH---HHHHHHHhhhhHHHHHHH-HHHHHHHHHHHhhhccCCCccchhhhcc
Confidence 244555 999999999999999999 998876433 10
Q ss_pred -------------hcCchhHHHHHHHHhceeeEeeccccccCCC
Q psy15814 193 -------------RTGTYDDYLELFIQFGYVYLFSAVFPMANTN 223 (224)
Q Consensus 193 -------------~~~~~~dy~E~~iQfG~vtlF~~afPlap~~ 223 (224)
.+|+++||+||++||||+|+|+++|||||++
T Consensus 578 ~~w~~d~~L~p~~~~gL~~eylemi~q~gFvtlFva~FpLaplf 621 (861)
T KOG2514|consen 578 ERWEQDYHLQPMGLLGLTPEYLEMILQFGFVTLFVAAFPLAPLF 621 (861)
T ss_pred cchhhccccCCcccccccHHHHHHHHHhccchhhhhhhhhHHHH
Confidence 0689999999999999999999999999986
No 4
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=97.00 E-value=0.0032 Score=55.80 Aligned_cols=58 Identities=26% Similarity=0.474 Sum_probs=46.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhhhHHHHHhhHHHHHH
Q psy15814 88 LPSTLYAALVYLMNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNFMSLFY 145 (224)
Q Consensus 88 ~~svl~~v~I~~l~~iY~~~a~~Lt~~Enhrt~~~ye~sli~K~f~f~fvn~~~~Lfy 145 (224)
+.+.+-.+++.++|.+-..+-+++.++|.|.|.++.|.+...|.|.|+++|.+.-...
T Consensus 104 i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~l 161 (325)
T PF02714_consen 104 IQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPSL 161 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445566677777788888899999999999999999999999999998865443
No 5
>KOG2513|consensus
Probab=87.50 E-value=5.3 Score=38.74 Aligned_cols=102 Identities=25% Similarity=0.443 Sum_probs=67.6
Q ss_pred EEEcchhHHHHHHHH-HHHHHHHHHHHHH-HhhhccccccccchhhhhhhHHHHHhhHHHHH--HHHHhhhhhhhhhhc-
Q psy15814 85 LVYLPSTLYAALVYL-MNMYYRELANFLT-EWENHRTQSQFDRYRITKLVLFEFVNNFMSLF--YVAFYIQDLEMLRTF- 159 (224)
Q Consensus 85 ~~~~~svl~~v~I~~-l~~iY~~~a~~Lt-~~Enhrt~~~ye~sli~K~f~f~fvn~~~~Lf--yiAF~~~~~~~l~~~- 159 (224)
...+|.++.++++.. +..+|-.+..|.. +++++ -..--+ .+...++..+.....-. +.|-+..++|++|.+
T Consensus 272 ~vsvPv~l~c~~i~l~f~l~~f~ie~~~~s~~~~~---~~sils-~lP~iv~~~li~~~t~~Y~k~Ae~Lt~~EN~r~~s 347 (647)
T KOG2513|consen 272 LVSVPVILLCLCILLSFMLYCFQIEVWVLSDYGGP---LISILS-YLPTIVYAVLIPVLTRIYKKLAEFLTKLENHRLES 347 (647)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 456788766665544 3445555655554 34333 111112 23444555555555544 478889999999876
Q ss_pred --ccchhhhhhHHHHHhhHHHHHHHHHhhhhhh
Q psy15814 160 --DRYRITKLVLFEFVNNFMSLFYVAFYIQDLE 190 (224)
Q Consensus 160 --~~~L~~~~~~~q~~~~~~e~~~iP~~~~~~~ 190 (224)
+.|++..+...+++|++..++|+.++.+++.
T Consensus 348 ~y~~hli~K~~lf~f~nsy~sLFyi~f~l~d~~ 380 (647)
T KOG2513|consen 348 AYQKHLIAKVFLFNFVNSYLSLFYIAFLLRDME 380 (647)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4679999999999999999999999887664
No 6
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=70.89 E-value=8 Score=23.14 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.6
Q ss_pred hhhhhhHHHHHhhHHHHHHHHHhhhhhh
Q psy15814 127 RITKLVLFEFVNNFMSLFYVAFYIQDLE 154 (224)
Q Consensus 127 li~K~f~f~fvn~~~~LfyiAF~~~~~~ 154 (224)
+++|.+....+..|.+||.-+|...|-.
T Consensus 2 ~~LK~~Vy~vV~ffv~LFifGflsnDp~ 29 (36)
T PF02532_consen 2 LTLKIFVYTVVIFFVSLFIFGFLSNDPG 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred eEEEEeehhhHHHHHHHHhccccCCCCC
Confidence 6899999999999999999999877643
No 7
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=68.44 E-value=1.8 Score=26.23 Aligned_cols=28 Identities=29% Similarity=0.524 Sum_probs=20.7
Q ss_pred cccccCCCccccccc-ccCCccccchhce
Q psy15814 11 TFHGKMGEDTVTGKM-QPQYPAWKTYTKM 38 (224)
Q Consensus 11 ~f~g~~~~~piTg~~-e~~~p~~kr~~~~ 38 (224)
+|..+..+||+||+. .+.-|.+++..+.
T Consensus 5 ~f~~np~~NP~Tgr~Ik~~gp~y~~l~~~ 33 (37)
T PF08793_consen 5 EFHRNPTVNPITGRKIKPGGPTYKKLVKE 33 (37)
T ss_pred HHHhCCCCCCCCCCcCCCCChHHHHHHHH
Confidence 466677899999995 5566777776655
No 8
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=65.95 E-value=54 Score=30.43 Aligned_cols=42 Identities=40% Similarity=0.660 Sum_probs=36.0
Q ss_pred HHHhhhhhhhhhhc---ccchhhhhhHHHHHhhHHHHHHHHHhhh
Q psy15814 146 VAFYIQDLEMLRTF---DRYRITKLVLFEFVNNFMSLFYVAFYIQ 187 (224)
Q Consensus 146 iAF~~~~~~~l~~~---~~~L~~~~~~~q~~~~~~e~~~iP~~~~ 187 (224)
+|-...++|++|.+ +..++.++...|++|++..++|+.++..
T Consensus 184 ~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~LfyiaF~~~ 228 (452)
T PF04547_consen 184 LAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYIAFFYG 228 (452)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888999999876 3459999999999999999998887765
No 9
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=51.21 E-value=4 Score=24.61 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.4
Q ss_pred hhhhhhHHHHHhhHHHHHHHHHhhhhh
Q psy15814 127 RITKLVLFEFVNNFMSLFYVAFYIQDL 153 (224)
Q Consensus 127 li~K~f~f~fvn~~~~LfyiAF~~~~~ 153 (224)
+++|.+....+..|.+||.-+|...|-
T Consensus 2 ltLKi~Vy~vV~ffvsLFiFGflsnDP 28 (38)
T PRK02655 2 LALKISVYIVVFFFVGLFVFGFLSSDP 28 (38)
T ss_pred eeEEeeehhhHHHHHHHHHcccCCCCC
Confidence 678999999999999999999887654
No 10
>KOG1134|consensus
Probab=47.92 E-value=34 Score=34.19 Aligned_cols=56 Identities=21% Similarity=0.396 Sum_probs=43.6
Q ss_pred EEcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhhhHHHHHhhHHHHHH
Q psy15814 86 VYLPSTLYAALVYLMNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNFMSLFY 145 (224)
Q Consensus 86 ~~~~svl~~v~I~~l~~iY~~~a~~Lt~~Enhrt~~~ye~sli~K~f~f~fvn~~~~Lfy 145 (224)
.++|+++..+...++ ..+-.++.++|.|-|.++-|++...|.+.|.++|.|..-..
T Consensus 412 gfLP~l~l~~~~~~l----P~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l 467 (728)
T KOG1134|consen 412 GFLPTLALVIFLALL----PPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTL 467 (728)
T ss_pred hhhHHHHHHHHHHHH----HHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhh
Confidence 345665555444444 45667888999999999999999999999999999876543
No 11
>CHL00024 psbI photosystem II protein I
Probab=47.47 E-value=5 Score=23.99 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=23.2
Q ss_pred hhhhhhHHHHHhhHHHHHHHHHhhhhh
Q psy15814 127 RITKLVLFEFVNNFMSLFYVAFYIQDL 153 (224)
Q Consensus 127 li~K~f~f~fvn~~~~LfyiAF~~~~~ 153 (224)
+++|.+....+..|.+||.-+|...|-
T Consensus 2 l~LKi~Vy~vV~ffvsLFifGFlsnDp 28 (36)
T CHL00024 2 LTLKLFVYTVVIFFVSLFIFGFLSNDP 28 (36)
T ss_pred eeEEeeehhHHHHHHHHHHccccCCCC
Confidence 578999999999999999988887654
No 12
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=46.65 E-value=6 Score=39.51 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=46.0
Q ss_pred EEcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhhhHHHHHhhHHHHHHHH
Q psy15814 86 VYLPSTLYAALVYLMNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNFMSLFYVA 147 (224)
Q Consensus 86 ~~~~svl~~v~I~~l~~iY~~~a~~Lt~~Enhrt~~~ye~sli~K~f~f~fvn~~~~LfyiA 147 (224)
..+|+++..+.+.+.- .+=+||+.|+.--|-++-|....-|.|.|.|+|.|......+
T Consensus 466 glLptv~~~~l~~ivP----~fir~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s 523 (827)
T COG5594 466 GLLPTVALSLLMSIVP----YFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLAS 523 (827)
T ss_pred hhhhHHHHHHHHHHhH----HHHHHHHHhcCccchHHHHHHHHhhhhhheeeeehheeeehh
Confidence 4567766665555554 455788899999999999999999999999999988766654
No 13
>PF04745 Pox_A8: VITF-3 subunit protein; InterPro: IPR006834 This is a family of Chordopoxvirus proteins composing one of the two subunits that make up VITF-3, a virally encoded complex necessary for intermediate stage transcription [].
Probab=30.41 E-value=1.5e+02 Score=25.90 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=43.4
Q ss_pred CCCceEEEcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhhh
Q psy15814 80 SHPGYLVYLPSTLYAALVYLMNMYYRELANFLTEWENHRTQSQFDRYRITKLV 132 (224)
Q Consensus 80 ~~~~~~~~~~svl~~v~I~~l~~iY~~~a~~Lt~~Enhrt~~~ye~sli~K~f 132 (224)
+..+|.+++++++|.++-.++..+|+.+++..++-.....+-..|+.+.+...
T Consensus 201 ~~vqWS~StgaVvnQ~VNtVL~tv~ell~k~~~~~~~~~C~LA~es~lp~~~L 253 (288)
T PF04745_consen 201 NAVQWSSSTGAVVNQMVNTVLITVYELLEKCIEEGKTFTCKLARESELPVDLL 253 (288)
T ss_pred CceEEeechhHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEeccCCCCCHHHH
Confidence 33589999999999999999999999999888876666777778877666554
No 14
>PF08106 Antimicrobial11: Formaecin family; InterPro: IPR012514 This entry consists of the formaecin family of antimicrobial peptides isolated from the bulldog ant Myrmecia gulosa in response to bacterial infection. Formaecins are inducible peptide antibiotics and are active against growing Escherichia coli but were inactive against other Gram-negative and Gram-positive bacteria. Formaecin peptides are 16 amino acids long, are rich in proline and have N-acetylgalactosamine O-linked to a conserved threonine [].; GO: 0042381 hemolymph coagulation, 0042742 defense response to bacterium
Probab=25.31 E-value=44 Score=16.07 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=9.1
Q ss_pred CCcccccccccC
Q psy15814 17 GEDTVTGKMQPQ 28 (224)
Q Consensus 17 ~~~piTg~~e~~ 28 (224)
|.||+..++.||
T Consensus 2 rpnpvn~kptp~ 13 (16)
T PF08106_consen 2 RPNPVNNKPTPH 13 (16)
T ss_pred CCCcccCCCCCC
Confidence 568888887775
Done!