Query psy15814
Match_columns 224
No_of_seqs 137 out of 687
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 22:02:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_I Photosystem II reaction 77.3 3 0.0001 24.3 3.4 28 127-154 2-29 (38)
2 4dgw_C PRE-mRNA-splicing facto 11.0 81 0.0028 25.5 1.0 24 8-31 99-126 (231)
3 2h1q_A Hypothetical protein; Z 8.3 1.4E+02 0.005 24.7 1.7 29 194-223 199-228 (270)
4 3npg_A Uncharacterized DUF364 8.2 1E+02 0.0035 25.2 0.7 30 194-223 177-206 (249)
5 1cqt_I POU domain, class 2, as 6.1 2.2E+02 0.0076 16.7 1.2 11 12-22 19-29 (44)
6 1sg5_A ORF, hypothetical prote 6.0 1.8E+02 0.0062 19.8 1.0 15 197-211 14-28 (86)
7 2kv5_A FST, putative uncharact 5.8 4.6E+02 0.016 14.6 2.4 13 105-117 19-31 (33)
8 3l5o_A Uncharacterized protein 5.0 2.5E+02 0.0085 23.3 1.3 30 194-223 199-228 (270)
9 4f3n_A Uncharacterized ACR, CO 4.3 2.6E+02 0.0089 24.9 1.0 16 196-211 77-95 (432)
10 2q7a_A Cell surface heme-bindi 4.2 2.5E+02 0.0086 21.3 0.8 9 18-26 16-24 (152)
No 1
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=77.34 E-value=3 Score=24.34 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.8
Q ss_pred hhhhhhHHHHHhhHHHHHHHHHhhhhhh
Q psy15814 127 RITKLVLFEFVNNFMSLFYVAFYIQDLE 154 (224)
Q Consensus 127 li~K~f~f~fvn~~~~LfyiAF~~~~~~ 154 (224)
+++|.+....+..|.+||.-+|...|-.
T Consensus 2 ltLKi~Vy~vV~ffvsLFiFGfLsnDP~ 29 (38)
T 3arc_I 2 ETLKITVYIVVTFFVLLFVFGFLSGDPA 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred eeEEeeehhHHHHHHHHHHccccCCCCC
Confidence 6899999999999999999999887643
No 2
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=10.96 E-value=81 Score=25.45 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=19.9
Q ss_pred CCCcccccCCCccccccc----ccCCcc
Q psy15814 8 PRPTFHGKMGEDTVTGKM----QPQYPA 31 (224)
Q Consensus 8 ~Rp~f~g~~~~~piTg~~----e~~~p~ 31 (224)
=||.|+-...+||.||.. +..||.
T Consensus 99 GRPGYKVTKVRDPETgQ~GLLFQVdYPE 126 (231)
T 4dgw_C 99 XXXXXXXXXXXXXXXGSVGMAIQVNYSS 126 (231)
T ss_dssp CCCCCBCCCEECCBCCBCCEEEEEECCC
T ss_pred ccccccccccccccCCCeeEEEEEECCh
Confidence 499999999999999984 556775
No 3
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=8.26 E-value=1.4e+02 Score=24.72 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=25.7
Q ss_pred cCchhHHHHHHHHhc-eeeEeeccccccCCC
Q psy15814 194 TGTYDDYLELFIQFG-YVYLFSAVFPMANTN 223 (224)
Q Consensus 194 ~~~~~dy~E~~iQfG-~vtlF~~afPlap~~ 223 (224)
+|++++.+|+.- =+ .++|.+++-|++|-+
T Consensus 199 N~Ti~~lL~~~~-~a~~vvl~GPS~p~~P~l 228 (270)
T 2h1q_A 199 DKTLPRLLELSR-NARRITLVGPGTPLAPVL 228 (270)
T ss_dssp HTCHHHHHHHTT-TSSEEEEESTTCCCCGGG
T ss_pred cCCHHHHHHhCc-cCCeEEEEecChhhhHHH
Confidence 799999999985 46 999999999999964
No 4
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=8.18 E-value=1e+02 Score=25.22 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=26.5
Q ss_pred cCchhHHHHHHHHhceeeEeeccccccCCC
Q psy15814 194 TGTYDDYLELFIQFGYVYLFSAVFPMANTN 223 (224)
Q Consensus 194 ~~~~~dy~E~~iQfG~vtlF~~afPlap~~ 223 (224)
+|++++.+|+.-.=..++|.+++-|++|-+
T Consensus 177 N~Ti~~lL~~~~~~~~vvl~GPS~~~~P~~ 206 (249)
T 3npg_A 177 NGTLDMILDRAKKAKLIVITGPTGQLLPEF 206 (249)
T ss_dssp HTCHHHHHHHCSSCSEEEEESGGGCSCGGG
T ss_pred cCCHHHHHHhCcccCeEEEEecCchhhHHH
Confidence 789999999987766889999999999964
No 5
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=6.08 E-value=2.2e+02 Score=16.69 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=8.6
Q ss_pred ccccCCCcccc
Q psy15814 12 FHGKMGEDTVT 22 (224)
Q Consensus 12 f~g~~~~~piT 22 (224)
|+|...++||-
T Consensus 19 YqGVRVkePVK 29 (44)
T 1cqt_I 19 YQGVRVKEPVK 29 (44)
T ss_dssp CCSCCCSSCHH
T ss_pred ccceecccHHH
Confidence 88888888773
No 6
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=5.98 E-value=1.8e+02 Score=19.78 Aligned_cols=15 Identities=33% Similarity=0.195 Sum_probs=12.1
Q ss_pred hhHHHHHHHHhceee
Q psy15814 197 YDDYLELFIQFGYVY 211 (224)
Q Consensus 197 ~~dy~E~~iQfG~vt 211 (224)
.-||+|++.|+++..
T Consensus 14 ~yD~LElAc~~~~~l 28 (86)
T 1sg5_A 14 DYDNLELACQHHLML 28 (86)
T ss_dssp SHHHHHHHHTTTTCE
T ss_pred hhhHHHHHHHcCCeE
Confidence 458999999998753
No 7
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=5.80 E-value=4.6e+02 Score=14.58 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhc
Q psy15814 105 RELANFLTEWENH 117 (224)
Q Consensus 105 ~~~a~~Lt~~Enh 117 (224)
.-+.+||++.+|.
T Consensus 19 ~L~d~WLn~r~~~ 31 (33)
T 2kv5_A 19 EMISRVLDEEDDS 31 (33)
T ss_dssp HHHHHHTTCCCCC
T ss_pred HHHHHHHcccccc
Confidence 3455677665543
No 8
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=4.95 E-value=2.5e+02 Score=23.29 Aligned_cols=30 Identities=23% Similarity=0.133 Sum_probs=25.7
Q ss_pred cCchhHHHHHHHHhceeeEeeccccccCCC
Q psy15814 194 TGTYDDYLELFIQFGYVYLFSAVFPMANTN 223 (224)
Q Consensus 194 ~~~~~dy~E~~iQfG~vtlF~~afPlap~~ 223 (224)
+++.++.+|..-.=..++|.+++-|+.|-+
T Consensus 199 N~Tl~~lL~~~~~a~~vvl~GPStp~~P~l 228 (270)
T 3l5o_A 199 DKTLPRLLELSRNARRITLVGPGTPLAPVL 228 (270)
T ss_dssp HTCHHHHHHHTTTSSEEEEESTTCCCCGGG
T ss_pred cCCHHHHHhhCCCCCEEEEECCCchhhHHH
Confidence 789999999986656899999999999964
No 9
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=4.32 E-value=2.6e+02 Score=24.90 Aligned_cols=16 Identities=25% Similarity=0.673 Sum_probs=13.9
Q ss_pred chhHHHHHHH---Hhceee
Q psy15814 196 TYDDYLELFI---QFGYVY 211 (224)
Q Consensus 196 ~~~dy~E~~i---QfG~vt 211 (224)
+|+||||+++ +.||-+
T Consensus 77 ~fa~yM~~aLy~P~~GYY~ 95 (432)
T 4f3n_A 77 PFSRYMERVLYAPGMGYYS 95 (432)
T ss_dssp EHHHHHHHHHHSTTTSSSC
T ss_pred eHHHHHHHHhcCCCCCccc
Confidence 6999999998 889864
No 10
>2q7a_A Cell surface heme-binding protein; beta sandwich; HET: HEM; 2.10A {Streptococcus pyogenes}
Probab=4.21 E-value=2.5e+02 Score=21.34 Aligned_cols=9 Identities=11% Similarity=0.660 Sum_probs=0.0
Q ss_pred Ccccccccc
Q psy15814 18 EDTVTGKMQ 26 (224)
Q Consensus 18 ~~piTg~~e 26 (224)
+||+||+.|
T Consensus 16 ~~PvTg~ie 24 (152)
T 2q7a_A 16 RHPISGQIE 24 (152)
T ss_dssp SCTTTCCCC
T ss_pred cCCCcccee
Done!