RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15814
         (224 letters)



>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel.  The
           family carries eight putative transmembrane domains,
           and, although it has no similarity to other known
           channel proteins, it is clearly a calcium-activated
           ionic channel. It is expressed in various secretory
           epithelia, the retina and sensory neurons, and mediates
           receptor-activated chloride currents in diverse
           physiological processes.
          Length = 449

 Score =  142 bits (361), Expect = 2e-40
 Identities = 77/265 (29%), Positives = 122/265 (46%), Gaps = 57/265 (21%)

Query: 1   MTSLDDTPRPTFHGKMGE-DTVTGKMQPQYPAWKTYTKMYCVSFPLMYCVSFPLVGVCML 59
                + PRP F G   E D +TG+++P YP WK           L   +S P+V + + 
Sbjct: 83  FEEEQEEPRPEFKGDEIEIDPITGELEPYYPPWKRL---------LRQLLSIPVVLLFIG 133

Query: 60  GAFLIMLSSFWLDRQIRAIPSHPG----YLVYLPSTLYAALVYLMNMYYRELANFLTEWE 115
               I++  F L   +  + S P        +LP+ L + ++ ++N  Y ++A  LT+WE
Sbjct: 134 LVIGIIIGIFILRIFLSEVYSGPSFKQSLESFLPAILNSVIILILNFIYEKVATKLTDWE 193

Query: 116 NHRTQSQFDRYRITKLVLFEFVNNFMSLFYVAFYIQ----------DLEMLRTFDRYRIT 165
           NHRTQS+++   I K+ LF+FVN++  LFY+AF+             LE L+      IT
Sbjct: 194 NHRTQSEYENSLILKVFLFQFVNSYSPLFYIAFFKGPFGGYCDFGGCLEELKY---QLIT 250

Query: 166 KLVLFEFVNNFMSLFY---------------------------VAFYIQDLEML---RTG 195
            ++  + +NN   +                             +     + E+      G
Sbjct: 251 IMITKQIINNITEVVLPYLKKKIRKKKIKKKKEKEKKPEENEILERIENESELPPYDVFG 310

Query: 196 TYDDYLELFIQFGYVYLFSAVFPMA 220
            +DDYLE+ IQFGY+ LFSA FP+A
Sbjct: 311 LFDDYLEMVIQFGYLTLFSAAFPLA 335


>gnl|CDD|190398 pfam02714, DUF221, Domain of unknown function DUF221.  This family
           consists of hypothetical transmembrane proteins none of
           which have any function, the aligned region is at 538
           residues at maximum length.
          Length = 325

 Score = 30.6 bits (70), Expect = 0.52
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 87  YLPSTLYAALVYLMNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNF 140
            LP+ L + L+ L+ +  R    FL++ + H ++S  +    +K   F  VN F
Sbjct: 107 LLPTLLLSLLMALLPIILR----FLSKLQGHPSRSDVELSVQSKYFAFLVVNVF 156


>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
            Provisional.
          Length = 2722

 Score = 30.6 bits (69), Expect = 0.87
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 124  DRYRITKLVLFEFVNNFMSLFYVAFYIQDLEMLRTFDRYRITKLVLFEFVNNFM 177
                 TK  L   VNNF SLF   FY+    +    ++Y   K  L E  N FM
Sbjct: 1652 LYMDSTKESLNSLVNNFSSLFN-NFYLNKYNINENLEKY---KKKLNEIYNEFM 1701


>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein
           [Function unknown].
          Length = 827

 Score = 28.5 bits (64), Expect = 3.1
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 88  LPSTLYAALVYLMNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNFMSLFYVA 147
           LP+   + L+ ++  + R    +L+  +   + S+ + Y   K   F FVN F+ +   +
Sbjct: 468 LPTVALSLLMSIVPYFIR----WLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLAS 523

Query: 148 FYIQDLEMLRTFDRYRITKLVLFEFVNNFM--SLFYVAFYIQ 187
            +   +  L        T ++     NN    S F++++ I 
Sbjct: 524 SFSSIVWSLLK----EPTSIMTL-LANNLPKASNFFISYIIL 560


>gnl|CDD|197867 smart00768, X8, Possibly involved in carbohydrate binding.  The X8
           domain, which may be involved in carbohydrate binding,
           is found in an Olive pollen antigen as well as at the C
           terminus of family 17 glycosyl hydrolases. It contains 6
           conserved cysteine residues which presumably form three
           disulfide bridges.
          Length = 85

 Score = 26.4 bits (59), Expect = 3.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 87  YLPSTLYAALVYLMNMYY 104
           Y P+T+ A   Y  N YY
Sbjct: 38  YSPNTVKAHASYAFNSYY 55


>gnl|CDD|216721 pfam01820, Dala_Dala_lig_N, D-ala D-ala ligase N-terminus.  This
          family represents the N-terminal region of the
          D-alanine--D-alanine ligase enzyme EC:6.3.2.4 which is
          thought to be involved in substrate binding. D-Alanine
          is one of the central molecules of the cross-linking
          step of peptidoglycan assembly. There are three enzymes
          involved in the D-alanine branch of peptidoglycan
          biosynthesis: the pyridoxal phosphate-dependent
          D-alanine racemase (Alr), the ATP-dependent
          D-alanine:D-alanine ligase (Ddl), and the ATP-dependent
          D-alanine:D-alanine-adding enzyme (MurF).
          Length = 110

 Score = 26.8 bits (60), Expect = 4.6
 Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 3/17 (17%)

Query: 10 PTFHGKMGEDTVTGKMQ 26
          P  HG  GED   G +Q
Sbjct: 84 PVLHGPFGED---GTIQ 97


>gnl|CDD|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular
           trafficking and secretion / Cell division and chromosome
           partitioning].
          Length = 646

 Score = 27.2 bits (60), Expect = 7.8
 Identities = 11/64 (17%), Positives = 24/64 (37%)

Query: 98  YLMNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNFMSLFYVAFYIQDLEMLR 157
           Y M +  +     L+E      +   +   + K   F F++      Y+   ++ ++  R
Sbjct: 556 YRMIILIQITPQLLSERVEEIYERAVNALFVRKSTRFAFIDGMDKEQYIEALVRLIDNGR 615

Query: 158 TFDR 161
             DR
Sbjct: 616 NGDR 619


>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
          Length = 376

 Score = 27.0 bits (60), Expect = 9.0
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 32  WKTYT-KMYCVSFPLMYCVSFPLVGVCMLGAFLIMLSSF 69
           W  Y   ++CV   + Y + FP+  + +   ++I LS+F
Sbjct: 78  WNIYLFPLWCVGVVIRYGILFPVRVLLLAIGWIIFLSAF 116


>gnl|CDD|227624 COG5308, NUP170, Nuclear pore complex subunit [Intracellular
           trafficking and secretion].
          Length = 1263

 Score = 27.2 bits (60), Expect = 9.6
 Identities = 9/43 (20%), Positives = 14/43 (32%)

Query: 6   DTPRPTFHGKMGEDTVTGKMQPQYPAWKTYTKMYCVSFPLMYC 48
              R  +     +  V  K QP        T+M  +  P +Y 
Sbjct: 371 KGSRDFYENLFLDRLVMLKRQPNSSDMTETTEMSTIISPGIYF 413


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.143    0.452 

Gapped
Lambda     K      H
   0.267   0.0758    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,836,003
Number of extensions: 1127881
Number of successful extensions: 1482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1463
Number of HSP's successfully gapped: 59
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (25.7 bits)