RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15814
(224 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 52/143 (36%)
Query: 106 EL-ANFL----TEWENHRTQSQFDRYRITKLVLFEFVNNFM------SLFYVAFYIQDLE 154
EL FL + E QFD+ + L L EF N ++ +L A +Q+ +
Sbjct: 59 ELVGKFLGYVSSLVEPS-KVGQFDQ--VLNLCLTEFENCYLEGNDIHAL--AAKLLQEND 113
Query: 155 --------MLRTFDRYRITKLV-----------LFEFVNNFMSLFYVAF--------YIQ 187
+++ + + LF V + F Y +
Sbjct: 114 TTLVKTKELIKNY--ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 188 DLEMLRTGTYDDY---LELFIQF 207
+L L Y Y + I+F
Sbjct: 172 ELRDL----YQTYHVLVGDLIKF 190
Score = 38.5 bits (89), Expect = 0.001
Identities = 23/173 (13%), Positives = 49/173 (28%), Gaps = 53/173 (30%)
Query: 39 YCVSFPLMYCVSFPLVGVCMLGAFLIMLSSFWLD-RQIRAIPSHPGYLVYLPSTLYAALV 97
Y +S P +S PL+GV L +++ ++R+ G + + A +
Sbjct: 230 YLLSIP----ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK--GATGHSQGLVTAVAI 283
Query: 98 YLMNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNFMSLFYVAFYIQDLEMLR 157
WE F + V F+I +
Sbjct: 284 --------AET---DSWE-------------------SFFVSVRKAITVLFFI-GVRCYE 312
Query: 158 TFDRYRITKLVLFEFVNN---FMSLFYVAFYIQDLEMLR-TGTYDDYLELFIQ 206
+ + +L + + N S ML + + ++ ++
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSP-----------MLSISNLTQEQVQDYVN 354
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 4e-04
Identities = 34/256 (13%), Positives = 68/256 (26%), Gaps = 97/256 (37%)
Query: 35 YTKMYCVSFPLMYCVSFPLVGVCMLGAFL---IMLSSFWL----DRQIRAIPS-----HP 82
Y P + P + ++ + + W D+ I S P
Sbjct: 310 YLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 83 GYL-------------VYLPSTLYAAL------------------------------VYL 99
++P+ L + + + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 100 MNMYYRELANFLTEWENHRTQSQFDRYRITKLVLFEFVNNFMSL--------FYVAFYIQ 151
++Y E+ HR S D Y I K F ++ + ++ +++
Sbjct: 429 PSIYLELKVKLENEYALHR--SIVDHYNIPK----TFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 152 DLEMLRTFDRYRITKLVL-FEFV------------------NNFMSL-FYVAFYIQDLEM 191
++E +R + L F F+ N L FY YI D +
Sbjct: 483 NIEHPERMTLFR--MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-YICDND- 538
Query: 192 LRTGTYDDYLELFIQF 207
Y+ + + F
Sbjct: 539 ---PKYERLVNAILDF 551
Score = 36.0 bits (82), Expect = 0.009
Identities = 32/214 (14%), Positives = 57/214 (26%), Gaps = 58/214 (27%)
Query: 3 SLDDTPRPTFHGKMGEDTVTGKMQPQYPAWKTYTKMYCVSFPLMYCVSFPL----VGVCM 58
L G +G +GK C+S+ + + F + + C
Sbjct: 146 ELRPAKNVLIDGVLG----SGK--------TWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 59 -LGAFLIMLSSFW--LDRQIRAIPSHPGYLVYLPSTLYAALVYLMNMYYRELANFLTEWE 115
L ML +D + H + + ++ EL L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHS-----------SNIKLRIHSIQAELRRLLKSK- 241
Query: 116 NHRTQSQFDRYRITKLVLFEFVNNFMSLFYVAFYIQDLEMLRTFD-RYRITKLVLFEFVN 174
Y LVL N +Q+ + F+ +I L+ F
Sbjct: 242 ---------PYENCLLVL----LN----------VQNAKAWNAFNLSCKI--LLTTRFKQ 276
Query: 175 NFMSLFYVAFYIQDLEMLRTG-TYDDYLELFIQF 207
L L+ T D+ L +++
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Score = 28.7 bits (63), Expect = 1.8
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 70 WLDRQIRAIPSHPGYLVYLPSTLYAALVY---------LMNMYYRELANFLTEWENHRTQ 120
+L+++IR + + +TL Y + +FL + E +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 121 SQFDRYRITKLVLFEFVNNFMSLFYVAF 148
S++ T L+ + ++F A
Sbjct: 562 SKY-----TDLLRIALMAEDEAIFEEAH 584
Score = 27.9 bits (61), Expect = 3.9
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 132 VLFEFVNNFMSLFYVAFYIQDLEMLRTFDRYRITKLVLFEFVN--NFMSLFYVAFYIQDL 189
+L F + F+ F +QD+ + ++K + + + +S F+ L
Sbjct: 21 ILSVFEDAFVDNFDCK-DVQDMP------KSILSKEEIDHIIMSKDAVSGTLRLFWT--L 71
Query: 190 EMLRTGTYDDYLELFIQFGYVYLFSAV 216
+ ++E ++ Y +L S +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPI 98
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal
transduction, photocycle ST membrane protein; HET: BOG
RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Length = 163
Score = 26.5 bits (58), Expect = 5.5
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 4 LDDTPRPTFHGKMGEDTVTGKMQPQYPAWKTYTKMYCVS-----FPLMYCVSFPLVGVCM 58
L R ++ GKMG + Y ++ + + ++G+ +
Sbjct: 7 LPSRVRHSYTGKMGAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLII 66
Query: 59 LGAFLIMLSSFWLDRQI 75
L + L + L
Sbjct: 67 LLGINLGLVAATLGGDT 83
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Length = 367
Score = 26.9 bits (60), Expect = 5.6
Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 3/17 (17%)
Query: 10 PTFHGKMGEDTVTGKMQ 26
HG GED GK+
Sbjct: 113 NLVHGGDGED---GKLA 126
>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis,
alpha/beta- hydrolases, catalytic triade, hydrolase;
1.8A {Bacillus subtilis} PDB: 2cbg_A*
Length = 244
Score = 26.3 bits (58), Expect = 6.8
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 61 AFLIMLSSFWLDRQIRAIPSHPGYLVYLPSTLYAALVYLMNMYYRELANFLTE 113
+ I++ ++ D+ I A + YLP + ++ Y A + E
Sbjct: 106 SDFIIVDAYKKDQSITADTENDDSAAYLPEAVRETVMQKKRCYQEYWAQLINE 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.143 0.452
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,531,274
Number of extensions: 202931
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 22
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (24.9 bits)