RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15814
         (224 letters)



>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 339

 Score = 27.5 bits (61), Expect = 1.5
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 164 ITKLVLFEFVNN------FMSLFYVAFYIQDLEMLRTGTYDDYLELFIQFGYVY 211
           + +  L  F++N       +  F+  F I +L + R+  Y +Y +     G  +
Sbjct: 199 LDENNLMSFLSNDNGKTYNLCHFWSNFEIANLNLWRSPAYREYFDTLDHQGGFF 252


>d2chha1 b.115.1.1 (A:1-113) Mannose-specific lectin RS-IIL
          {Ralstonia solanacearum [TaxId: 305]}
          Length = 113

 Score = 25.2 bits (55), Expect = 4.4
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 4  LDDTPRPTFHGKMGEDTVTG 23
          +D+  + TF G    D + G
Sbjct: 32 VDNVVKATFTGSGTSDKLLG 51


>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit
          VIa {Cow (Bos taurus) [TaxId: 9913]}
          Length = 84

 Score = 24.3 bits (53), Expect = 5.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 45 LMYCVSFPLVGVCMLGAFL 63
          L + ++ P V +C L ++L
Sbjct: 19 LTFGLALPSVALCTLNSWL 37


>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 418

 Score = 25.1 bits (55), Expect = 8.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 10  PTFHGKMGEDTVTGKMQPQYPAWKTYT 36
           P FH +M    +T   + Q   W T+ 
Sbjct: 391 PVFHQEMLNYRLTPSFEYQPDPWNTHV 417


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.143    0.452 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 874,317
Number of extensions: 40430
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 6
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.6 bits)