Query psy15815
Match_columns 117
No_of_seqs 104 out of 475
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:02:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04547 Anoctamin: Calcium-ac 100.0 2.4E-32 5.2E-37 222.2 11.3 108 1-108 337-452 (452)
2 KOG2513|consensus 100.0 4.8E-30 1E-34 213.2 12.0 116 1-116 496-617 (647)
3 KOG2514|consensus 99.9 5.7E-26 1.2E-30 193.5 6.7 117 1-117 617-810 (861)
4 cd07223 Pat_PNPLA5-mammals Pat 52.6 42 0.0009 27.9 5.5 27 75-102 350-376 (405)
5 TIGR01474 ubiA_proteo 4-hydrox 43.1 14 0.00031 28.5 1.4 31 6-37 57-87 (281)
6 PHA00726 hypothetical protein 42.8 20 0.00042 23.5 1.8 21 24-45 25-51 (89)
7 COG0109 CyoE Polyprenyltransfe 37.2 26 0.00055 28.1 2.0 27 6-33 69-95 (304)
8 PRK12848 ubiA 4-hydroxybenzoat 35.6 24 0.00052 27.2 1.6 31 6-37 59-89 (282)
9 PRK12878 ubiA 4-hydroxybenzoat 34.3 29 0.00063 27.4 1.9 29 6-35 89-117 (314)
10 PRK12886 ubiA prenyltransferas 32.2 31 0.00067 26.9 1.8 31 6-37 59-89 (291)
11 PLN02776 prenyltransferase 30.0 38 0.00083 27.4 2.0 30 6-36 46-75 (341)
12 PF14038 YqzE: YqzE-like prote 26.4 1.1E+02 0.0024 18.2 3.1 23 84-106 6-30 (54)
13 PF12333 Ipi1_N: Rix1 complex 26.1 56 0.0012 21.4 2.0 35 11-46 24-58 (102)
14 PRK12847 ubiA 4-hydroxybenzoat 25.8 51 0.0011 25.3 2.0 30 6-36 62-91 (285)
15 PRK13362 protoheme IX farnesyl 25.6 41 0.00088 26.5 1.4 31 6-37 64-94 (306)
16 KOG4489|consensus 24.8 1.2E+02 0.0027 19.5 3.2 26 75-100 21-46 (87)
17 PHA00438 hypothetical protein 23.2 64 0.0014 20.8 1.7 13 92-104 15-27 (81)
18 PF10911 DUF2717: Protein of u 23.0 65 0.0014 20.6 1.7 13 92-104 15-27 (77)
19 PF12194 Ste5_C: Protein kinas 22.5 58 0.0013 24.4 1.6 14 35-48 163-176 (191)
20 PRK12895 ubiA prenyltransferas 22.5 62 0.0013 25.3 1.9 31 6-37 54-84 (286)
21 TIGR01475 ubiA_other putative 22.3 55 0.0012 25.1 1.6 29 6-35 53-81 (282)
22 TIGR01473 cyoE_ctaB protoheme 22.0 37 0.0008 26.0 0.5 29 6-35 52-80 (280)
23 COG4338 Uncharacterized protei 22.0 28 0.00061 20.5 -0.1 16 19-34 12-27 (54)
24 PRK12882 ubiA prenyltransferas 21.4 59 0.0013 24.8 1.5 27 6-35 55-81 (276)
25 PRK12870 ubiA 4-hydroxybenzoat 20.8 68 0.0015 24.9 1.8 31 6-37 63-93 (290)
26 PRK12869 ubiA protoheme IX far 20.1 58 0.0013 25.1 1.3 31 6-37 53-83 (279)
No 1
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.98 E-value=2.4e-32 Score=222.15 Aligned_cols=108 Identities=35% Similarity=0.770 Sum_probs=100.2
Q ss_pred ChhHHHHHHHHHHHhhhHhhhhhhhcCCCccccCChhhHHHHHHHHHH-----HHHHHhhh---hhhcccCCCchhHHHH
Q psy15815 1 MAAFWALINNMLEVRSDAFKLCCLYQRPIARRVKNIGAWQVLFLFVVF-----EHILLLLR---YVLVYCISDKPHWVLF 72 (117)
Q Consensus 1 Lapl~alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~-----N~~li~~t---~~~~~~p~~~~~~~l~ 72 (117)
|||++|++||++|+|+|++|+++.+|||.|++++|||+|+++|+++++ ||++++++ ++..++|+.....+++
T Consensus 337 lapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN~~li~~~s~~~~~~~~~~~~~~~~~~ 416 (452)
T PF04547_consen 337 LAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITNAALIAFTSDGQLQGYFPDSSLAQRLL 416 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhhhcchhhhhcccchHHHHHH
Confidence 699999999999999999999999999999999999999999999999 99999999 2566776644455679
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15815 73 LFVVFEHILLLLRYVLVYCISDKPHWVRVALAKLNY 108 (117)
Q Consensus 73 ~~i~~EH~~~~lk~~l~~~Ipd~P~~V~~~~~r~~~ 108 (117)
+++++||+++++|++++++|||+|+||+++++|++|
T Consensus 417 ~~l~~eh~~~~~~~~i~~~ipd~P~~v~~~~~r~~Y 452 (452)
T PF04547_consen 417 FFLVFEHVVFFLKYLISWLIPDVPKWVRIQIQREEY 452 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999997
No 2
>KOG2513|consensus
Probab=99.97 E-value=4.8e-30 Score=213.22 Aligned_cols=116 Identities=39% Similarity=0.717 Sum_probs=106.3
Q ss_pred ChhHHHHHHHHHHHhhhHhhhhhhhcCCCccccCChhhHHHHHHHHHH-----HHHHHhhh-hhhcccCCCchhHHHHHH
Q psy15815 1 MAAFWALINNMLEVRSDAFKLCCLYQRPIARRVKNIGAWQVLFLFVVF-----EHILLLLR-YVLVYCISDKPHWVLFLF 74 (117)
Q Consensus 1 Lapl~alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~-----N~~li~~t-~~~~~~p~~~~~~~l~~~ 74 (117)
|||++|++||++|+|+|++|+|...|||+|+|+++||+|+++++++++ ||+|++++ +..+.+|--++....+.+
T Consensus 496 LA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG~Wq~~l~~lSvls~vtncaLi~~~~~~~~~~~~~s~~~~il~~ 575 (647)
T KOG2513|consen 496 LAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIGAWQNALELLSVLSCVTNCALIGMYPQVNKLWPLLSPENAILII 575 (647)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhHHHHHHHHHHHHHHHHHhHHHHhccccccccCcccchHHHHHHH
Confidence 799999999999999999999999999999999999999999999999 99999999 777666632333345788
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhc
Q psy15815 75 VVFEHILLLLRYVLVYCISDKPHWVRVALAKLNYQSRQALKN 116 (117)
Q Consensus 75 i~~EH~~~~lk~~l~~~Ipd~P~~V~~~~~r~~~~~~~~l~~ 116 (117)
+++||+.+++|+++.++|||.|.||+..+.|.+++.+++++.
T Consensus 576 V~~EH~~l~Lkflis~vipe~p~wva~~~~k~~~~~~e~~~k 617 (647)
T KOG2513|consen 576 VILEHVLLLLKFLISSVIPESPRWVAAGIAKAEFQAREAFKK 617 (647)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999999999999999999874
No 3
>KOG2514|consensus
Probab=99.92 E-value=5.7e-26 Score=193.51 Aligned_cols=117 Identities=26% Similarity=0.461 Sum_probs=102.5
Q ss_pred ChhHHHHHHHHHHHhhhHhhhhhhhcCCCccccCChhhHHHHHHHHHH-----HHHHHhhh-h-----hhc--ccCC---
Q psy15815 1 MAAFWALINNMLEVRSDAFKLCCLYQRPIARRVKNIGAWQVLFLFVVF-----EHILLLLR-Y-----VLV--YCIS--- 64 (117)
Q Consensus 1 Lapl~alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~-----N~~li~~t-~-----~~~--~~p~--- 64 (117)
|||++|++||++|+|.||+||++..|||++.|+.+||.|+.++++|+. |+++|++| + +++ ++.+
T Consensus 617 LaplfaLLnniieirlda~Kl~t~~rRpv~~r~~diG~W~~il~~i~~lavi~nafiIa~tsd~Iprlvy~~k~s~~~~~ 696 (861)
T KOG2514|consen 617 LAPLFALLNNIIEIRLDAKKLVTQKRRPVAARAVDIGAWYGILQGIGKLAVITNAFIIAFTSDFIPRLVYEFKYSKSQPR 696 (861)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHhhhcchhHHHhhhhhhHhhhcceeeEEeecceeeeeeeccchhhhhheeEeccCCCc
Confidence 799999999999999999999999999999999999999999999999 99999998 4 121 1100
Q ss_pred ----------------------------C--c---------------------h-------h---HHHHHHHHHHHHHHH
Q psy15815 65 ----------------------------D--K---------------------P-------H---WVLFLFVVFEHILLL 83 (117)
Q Consensus 65 ----------------------------~--~---------------------~-------~---~~l~~~i~~EH~~~~ 83 (117)
+ + | + -+++|++++||+++.
T Consensus 697 ~~S~~tl~gy~n~tlS~f~~sd~~~~~~~~~d~~~~~tCrYrdyR~pP~s~~pY~~s~~~whvlAarLaFiiVfehlV~~ 776 (861)
T KOG2514|consen 697 MRSFGTLLGYVNHTLSIFNVSDFKEEKSGESDPADLTTCRYRDYRIPPWSPEPYGLSIQYWHVLAARLAFVIVFENLVFE 776 (861)
T ss_pred ccccchhhhhhhccccccchhhccCCCCCCCCccccceeeeccccCCCCCccccccchhHHHHHHHHhhHHHHHHHHHHH
Confidence 0 0 0 1 148999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcC
Q psy15815 84 LRYVLVYCISDKPHWVRVALAKLNYQSRQALKNQ 117 (117)
Q Consensus 84 lk~~l~~~Ipd~P~~V~~~~~r~~~~~~~~l~~~ 117 (117)
+|.+++++|||+|++++++++||+|+..+.++++
T Consensus 777 ik~~i~~~IPDvPk~l~dqi~REkyL~~e~~~e~ 810 (861)
T KOG2514|consen 777 IKELVSWTIPDVPKDLKDQIRREKYLAQELFYET 810 (861)
T ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998863
No 4
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=52.65 E-value=42 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHH
Q psy15815 75 VVFEHILLLLRYVLVYCISDKPHWVRVA 102 (117)
Q Consensus 75 i~~EH~~~~lk~~l~~~Ipd~P~~V~~~ 102 (117)
+=+|.+++..+-+++| +||+|++++.-
T Consensus 350 lp~e~~~~~~~r~~~w-lpd~p~d~~w~ 376 (405)
T cd07223 350 LPFEYIYFRSRRLVAW-LPDVPADLWWM 376 (405)
T ss_pred chHHHHHHHHHHHHHH-cCCChHHHHHH
Confidence 3479999999999998 59999987643
No 5
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=43.08 E-value=14 Score=28.47 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCChh
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKNIG 37 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG 37 (117)
+.+|++.|...|+ +.-+...||.|++.-+..
T Consensus 57 ~~~Nd~~D~~iD~-~~~Rt~~RPl~sG~is~~ 87 (281)
T TIGR01474 57 CVINDIWDRDFDP-QVERTKSRPLASGAVSVR 87 (281)
T ss_pred HHHHhHhhhcccc-cCCcccCCCCCCCCcCHH
Confidence 4789999999998 444445799999886543
No 6
>PHA00726 hypothetical protein
Probab=42.83 E-value=20 Score=23.54 Aligned_cols=21 Identities=24% Similarity=0.702 Sum_probs=14.2
Q ss_pred hhcCCCcccc------CChhhHHHHHHH
Q psy15815 24 LYQRPIARRV------KNIGAWQVLFLF 45 (117)
Q Consensus 24 ~~rRP~p~~~------~~IG~W~~il~~ 45 (117)
.+|+|.|++. .+|| |+-+-..
T Consensus 25 LFRKpK~k~~~~~~~~r~iG-yYlViss 51 (89)
T PHA00726 25 LFRKPKPKKVKSTLNHRSIG-YYLVISS 51 (89)
T ss_pred HhcCCCCchhhcCCCCccee-eeeHHHH
Confidence 6899999888 4566 5544433
No 7
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=37.15 E-value=26 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCcccc
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRV 33 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~ 33 (117)
+-+||++|-..|+ +|.+..+||.|++.
T Consensus 69 ~a~N~~~DrDID~-~M~RT~~RP~~~G~ 95 (304)
T COG0109 69 GAFNMYIDRDIDA-LMERTRKRPLVTGL 95 (304)
T ss_pred HHHhhhhhhhHHH-hhhhccCCCCCCCc
Confidence 4689999999997 56788899999876
No 8
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=35.62 E-value=24 Score=27.24 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCChh
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKNIG 37 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG 37 (117)
..+|++.|...|. |.-+...||.|++.-|..
T Consensus 59 ~~~Nd~~D~~iD~-~~~Rt~~RPl~sG~is~~ 89 (282)
T PRK12848 59 CVINDYADRDFDG-HVKRTKNRPLASGAVSEK 89 (282)
T ss_pred HHHHhhHHhccCC-CCCCCCCCCCCCCCcCHH
Confidence 4799999999996 333335699999886654
No 9
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=34.29 E-value=29 Score=27.43 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCC
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKN 35 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~ 35 (117)
+.+|++.|-..|+. .-+...||.|.+.-+
T Consensus 89 ~~~Nd~~Dr~iD~~-~~Rt~~RPl~sG~is 117 (314)
T PRK12878 89 CTYNDIVDRDIDAK-VARTRSRPLPSGQVS 117 (314)
T ss_pred HHHHHHHHHhcccC-CCCCCCCCCCCCCcC
Confidence 57899999999984 444567999998654
No 10
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=32.17 E-value=31 Score=26.90 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCChh
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKNIG 37 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG 37 (117)
+.+||+.|...|+.. -+...||.|.+.=|..
T Consensus 59 ~~~Nd~~D~~iD~~~-~RT~~RPL~sG~is~~ 89 (291)
T PRK12886 59 MGFNRLIDAEIDARN-PRTAGRAIPAGLISKG 89 (291)
T ss_pred HHHHhHHhhccCCCC-CCCCCCCCCCCCcCHH
Confidence 568999999999743 2345699999976654
No 11
>PLN02776 prenyltransferase
Probab=30.02 E-value=38 Score=27.39 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCCh
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKNI 36 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~I 36 (117)
+-+||++|...|+. +-+...||.|.+.=+.
T Consensus 46 ~~~N~i~DrdiD~~-m~RT~~RPLpsGris~ 75 (341)
T PLN02776 46 NTLNQVFEVKNDSK-MKRTMRRPLPSGRISV 75 (341)
T ss_pred HHHHhHHhhhhccc-CCCCCCCCCCCCCCCH
Confidence 47899999999975 3455789999987553
No 12
>PF14038 YqzE: YqzE-like protein
Probab=26.44 E-value=1.1e+02 Score=18.23 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=16.8
Q ss_pred HHHHHHHhcc--CCCHHHHHHHHHH
Q psy15815 84 LRYVLVYCIS--DKPHWVRVALAKL 106 (117)
Q Consensus 84 lk~~l~~~Ip--d~P~~V~~~~~r~ 106 (117)
+||+-+.++- |.|++.+.+.+.+
T Consensus 6 VKy~Tqq~V~YmdtPkeERk~~k~~ 30 (54)
T PF14038_consen 6 VKYMTQQFVKYMDTPKEERKERKEE 30 (54)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 5677777766 8999988776544
No 13
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=26.09 E-value=56 Score=21.42 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHhhhHhhhhhhhcCCCccccCChhhHHHHHHHH
Q psy15815 11 MLEVRSDAFKLCCLYQRPIARRVKNIGAWQVLFLFV 46 (117)
Q Consensus 11 ~iEir~Da~Kl~~~~rRP~p~~~~~IG~W~~il~~i 46 (117)
.-++|.|+.|++...=.-.|.. ---|.|..+++..
T Consensus 24 ~~~Ir~dsl~~L~~lL~~~p~~-~~~~~~~kil~~f 58 (102)
T PF12333_consen 24 SPDIREDSLKFLDLLLEHAPDE-LCSGGWVKILPNF 58 (102)
T ss_pred CHHHHHhHHHHHHHHHHHCChH-hHhhhHHHHHHHH
Confidence 3699999999998666666655 2236688877653
No 14
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=25.80 E-value=51 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCCh
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKNI 36 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~I 36 (117)
+.+||+.|...|.. .-+...||.|.+.-+.
T Consensus 62 ~~~Nd~~D~~iD~~-~~Rt~~Rpl~sG~is~ 91 (285)
T PRK12847 62 CIINDIFDRKIDKH-VARTKNRPLASGALSV 91 (285)
T ss_pred HHHHhHHHhhhccC-CCcccCCCCCCCCcCH
Confidence 47999999999973 3333579999987543
No 15
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=25.55 E-value=41 Score=26.54 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCChh
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKNIG 37 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG 37 (117)
..+|++.|...|+. +-+...||.|.+.=+.+
T Consensus 64 ~~~Nd~~D~~iD~~-~~Rt~~RPlpsG~is~~ 94 (306)
T PRK13362 64 CALNNCIDRDIDAK-MQRTRNRVTVTGEISLG 94 (306)
T ss_pred HHHhChHHhCcCCC-CCCCCCCCCCCCCCCHH
Confidence 47899999999972 23335799999875543
No 16
>KOG4489|consensus
Probab=24.84 E-value=1.2e+02 Score=19.46 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHH
Q psy15815 75 VVFEHILLLLRYVLVYCISDKPHWVR 100 (117)
Q Consensus 75 i~~EH~~~~lk~~l~~~Ipd~P~~V~ 100 (117)
+.+||.+|..-|++.......|-.+.
T Consensus 21 l~~~h~mFm~fYlvgFfLERkPCtIC 46 (87)
T KOG4489|consen 21 LLVEHAMFMWFYLVGFFLERKPCTIC 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceeh
Confidence 56899999999999999888876543
No 17
>PHA00438 hypothetical protein
Probab=23.15 E-value=64 Score=20.81 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=11.3
Q ss_pred ccCCCHHHHHHHH
Q psy15815 92 ISDKPHWVRVALA 104 (117)
Q Consensus 92 Ipd~P~~V~~~~~ 104 (117)
|||+|..+.+.++
T Consensus 15 iPdvpraa~eyLq 27 (81)
T PHA00438 15 IPDVPRAAAEYLQ 27 (81)
T ss_pred cccccHHHHHHHH
Confidence 7999999988776
No 18
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=23.02 E-value=65 Score=20.65 Aligned_cols=13 Identities=31% Similarity=0.278 Sum_probs=11.2
Q ss_pred ccCCCHHHHHHHH
Q psy15815 92 ISDKPHWVRVALA 104 (117)
Q Consensus 92 Ipd~P~~V~~~~~ 104 (117)
|||+|+.+.+.++
T Consensus 15 iP~ipra~aeyLq 27 (77)
T PF10911_consen 15 IPDIPRAAAEYLQ 27 (77)
T ss_pred cCCccHHHHHHHH
Confidence 7999999888776
No 19
>PF12194 Ste5_C: Protein kinase Fus3-binding; InterPro: IPR021106 The Saccharomyces cerevisiae pheromone response pathway involves a cascade of 3 MAP kinases Ste11, Ste7, and Fus3. Ste5 is an essential element of this cascade, acting as a scaffold for each of the MAP kinases prior to signalling []. This entry represents the Fus3-binding domain of Ste5, also known as the minimal scaffold domain. It acts as a co-catalyst, binding Fus3 and promoting its phosphorylation by Ste7 []. In the absence of this domain, Fus3 is an extremely poor substrate for Ste7. The requirement for both Ste7 and this domain in Fus3 activation ensures that Fus3 is selectively activated by the mating pathway and not by other pathways that also utilise Ste7.; PDB: 3FZE_A.
Probab=22.50 E-value=58 Score=24.35 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=11.7
Q ss_pred ChhhHHHHHHHHHH
Q psy15815 35 NIGAWQVLFLFVVF 48 (117)
Q Consensus 35 ~IG~W~~il~~i~~ 48 (117)
.||.|..+||.+++
T Consensus 163 Ei~sW~~lLEaLcY 176 (191)
T PF12194_consen 163 EIESWNDLLEALCY 176 (191)
T ss_dssp EES-HHHHHHHHHH
T ss_pred hhccHHHHHHHHHh
Confidence 47899999999988
No 20
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=22.49 E-value=62 Score=25.35 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCChh
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKNIG 37 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG 37 (117)
+-+|++++.+.|+.. -+...||.|.+.=|..
T Consensus 54 ~~~Ndi~Dr~iD~~~-~RT~~RPLpsG~is~~ 84 (286)
T PRK12895 54 MSINRIEGLRYDMIN-PRKKDWALVSGRIKMR 84 (286)
T ss_pred HHHHhHHHhcccCCC-CcCCCCCCCCCCCCHH
Confidence 578999999999654 3457899999986543
No 21
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=22.34 E-value=55 Score=25.09 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCC
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKN 35 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~ 35 (117)
+.+|++.|...|+.. -+...||.|.+.=+
T Consensus 53 ~~~Nd~~D~~~D~~~-~Rt~~RPl~sG~is 81 (282)
T TIGR01475 53 MAFNRIIDRAIDARN-PRTKNRPLVSGLIS 81 (282)
T ss_pred HHHHHHHHHcccCCC-CccCCCCCCCCCcC
Confidence 579999999999874 33466999998743
No 22
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=22.01 E-value=37 Score=26.04 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCC
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKN 35 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~ 35 (117)
..+|++.|...|+. .-+...||.|++.=+
T Consensus 52 ~~~Nd~~D~~iD~~-~~Rt~~Rpl~sG~is 80 (280)
T TIGR01473 52 NAFNMYIDRDIDKK-MKRTRNRPLVTGRIS 80 (280)
T ss_pred HHHHhhcccCcCCC-CCCCCCCCCCCCCcC
Confidence 57899999999985 223366999998644
No 23
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.97 E-value=28 Score=20.51 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=13.2
Q ss_pred hhhhhhhcCCCccccC
Q psy15815 19 FKLCCLYQRPIARRVK 34 (117)
Q Consensus 19 ~Kl~~~~rRP~p~~~~ 34 (117)
-|+|-.++||+..|-.
T Consensus 12 ~KICpvCqRPFsWRkK 27 (54)
T COG4338 12 DKICPVCQRPFSWRKK 27 (54)
T ss_pred hhhhhhhcCchHHHHH
Confidence 4888999999988854
No 24
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=21.42 E-value=59 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCC
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKN 35 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~ 35 (117)
..+|++.+...|.. +...||.|++.=+
T Consensus 55 ~~~Nd~~D~~iD~~---~~~~Rpl~~G~is 81 (276)
T PRK12882 55 NAINDYFDREIDRI---NRPDRPIPSGAVS 81 (276)
T ss_pred HHHHHHhhhccccc---cCCCCCcCCCCcC
Confidence 57999999999984 2367999997644
No 25
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=20.81 E-value=68 Score=24.94 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCChh
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKNIG 37 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG 37 (117)
+.+|++.+...|. |.-+...||.|.+.=+..
T Consensus 63 ~~~Nd~~D~~iD~-~~~Rt~~RPL~sG~is~~ 93 (290)
T PRK12870 63 CVVNDLWDRDIDP-QVERTRFRPLASRRLSVK 93 (290)
T ss_pred HHHHhHHHhccCC-CCCcccCCCCCCCCcCHH
Confidence 4789999999995 333445799999986654
No 26
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=20.13 E-value=58 Score=25.06 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhhHhhhhhhhcCCCccccCChh
Q psy15815 6 ALINNMLEVRSDAFKLCCLYQRPIARRVKNIG 37 (117)
Q Consensus 6 alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG 37 (117)
..+|++.|-..|+.. -+..+||.|.+.-|..
T Consensus 53 ~~~Nd~~D~~iD~~~-~Rt~~RPl~sG~is~~ 83 (279)
T PRK12869 53 AAFNHGIERDIDKVM-SRTSKRPTPVGLVNRK 83 (279)
T ss_pred HHHhchHhcCCCCCC-CCCCCCCcCCCCcCHH
Confidence 578999999999752 2336799999886543
Done!