Query psy15815
Match_columns 117
No_of_seqs 104 out of 475
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:03:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kwh_A RAla-binding protein 1; 84.2 0.86 3E-05 26.6 2.7 21 93-113 2-22 (56)
2 4fqn_A Malcavernin; helical do 41.5 15 0.00051 23.7 2.0 45 3-48 49-93 (98)
3 3fze_A Protein STE5; alpha/bet 21.0 38 0.0013 24.3 1.4 14 35-48 166-179 (196)
4 3kny_A Hypothetical protein BT 18.1 17 0.0006 25.7 -0.9 22 93-114 28-49 (218)
5 2zvk_U DNA polymerase ETA, pro 13.8 84 0.0029 15.1 1.2 15 25-39 1-15 (26)
6 3j20_Q 30S ribosomal protein S 13.0 2.3E+02 0.0078 19.6 3.8 25 89-113 85-109 (158)
7 2kdc_A Diacylglycerol kinase; 12.1 41 0.0014 22.2 -0.3 30 7-39 70-99 (121)
8 2dl0_A SAM and SH3 domain-cont 11.9 92 0.0031 19.4 1.4 28 21-48 10-38 (97)
9 2oqq_A Transcription factor HY 10.3 2E+02 0.0067 15.5 2.1 14 103-116 29-42 (42)
10 2vgp_C Inner centromere protei 9.5 1.9E+02 0.0066 15.5 2.0 10 99-108 10-19 (43)
No 1
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=84.16 E-value=0.86 Score=26.64 Aligned_cols=21 Identities=5% Similarity=0.142 Sum_probs=19.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q psy15815 93 SDKPHWVRVALAKLNYQSRQA 113 (117)
Q Consensus 93 pd~P~~V~~~~~r~~~~~~~~ 113 (117)
||.|++++.+++|++++..++
T Consensus 2 p~~~e~I~~El~kQe~lL~~L 22 (56)
T 2kwh_A 2 SETQAGIKEEIRRQEFLLNSL 22 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998775
No 2
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=41.54 E-value=15 Score=23.69 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHhhhHhhhhhhhcCCCccccCChhhHHHHHHHHHH
Q psy15815 3 AFWALINNMLEVRSDAFKLCCLYQRPIARRVKNIGAWQVLFLFVVF 48 (117)
Q Consensus 3 pl~alinN~iEir~Da~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~ 48 (117)
|+--+.+..+|+..|--|..-..-||+ .+.++||.+..-+|.++.
T Consensus 49 ~I~~Fc~kLl~LyG~~Rk~LL~gmRpF-Ip~~Di~~FesFle~igi 93 (98)
T 4fqn_A 49 SIHEFCINLRQLYGDSRKFLLLGLRPF-IPEKDSQHFENFLETIGV 93 (98)
T ss_dssp CHHHHHHHHHHHHCGGGGGGGGGGGGG-SCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhchHHHHHHhhccCC-CChhhHHHHHHHHHHcCc
Confidence 445577889999999999987777888 555799999998887653
No 3
>3fze_A Protein STE5; alpha/beta/alpha, VWA-like fold (SCOP), cytoplasm, pheromone response, phosphoprotein, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 4f2h_A
Probab=21.01 E-value=38 Score=24.35 Aligned_cols=14 Identities=7% Similarity=0.515 Sum_probs=12.5
Q ss_pred ChhhHHHHHHHHHH
Q psy15815 35 NIGAWQVLFLFVVF 48 (117)
Q Consensus 35 ~IG~W~~il~~i~~ 48 (117)
.||.|..+||.+++
T Consensus 166 Ei~sWn~lLEaLCY 179 (196)
T 3fze_A 166 EASSWTFVLETLCY 179 (196)
T ss_dssp EESCHHHHHHHHHH
T ss_pred eeccHHHHHHHHHh
Confidence 47899999999987
No 4
>3kny_A Hypothetical protein BT_3535; structural genomics, joint center for structural genomics, J protein structure initiative; 2.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=18.11 E-value=17 Score=25.74 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=17.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHH
Q psy15815 93 SDKPHWVRVALAKLNYQSRQAL 114 (117)
Q Consensus 93 pd~P~~V~~~~~r~~~~~~~~l 114 (117)
..+|+||+++..-+||..=+.+
T Consensus 28 dsVPeWVKeKvT~kEYELW~~m 49 (218)
T 3kny_A 28 NTIPDWVSEKVTPKEYELWRTM 49 (218)
T ss_dssp TCCCGGGGGSSCHHHHHHHHHH
T ss_pred ccchHHHhccCCHHHHHHHHHH
Confidence 4699999999998988765443
No 5
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=13.77 E-value=84 Score=15.14 Aligned_cols=15 Identities=13% Similarity=0.465 Sum_probs=9.2
Q ss_pred hcCCCccccCChhhH
Q psy15815 25 YQRPIARRVKNIGAW 39 (117)
Q Consensus 25 ~rRP~p~~~~~IG~W 39 (117)
++||-|+.......+
T Consensus 1 ~KR~R~~g~~TLesF 15 (26)
T 2zvk_U 1 CKRPRPEGMQTLESF 15 (26)
T ss_pred CCCCCccccccHHHH
Confidence 467777766655443
No 6
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=12.99 E-value=2.3e+02 Score=19.56 Aligned_cols=25 Identities=4% Similarity=-0.057 Sum_probs=20.5
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHH
Q psy15815 89 VYCISDKPHWVRVALAKLNYQSRQA 113 (117)
Q Consensus 89 ~~~Ipd~P~~V~~~~~r~~~~~~~~ 113 (117)
..+-|++|+++..-.+|...+.+..
T Consensus 85 ~gl~p~iPEDL~~Lt~RI~~Lt~HL 109 (158)
T 3j20_Q 85 HGLAPEIPEDLMFLIRRAVNLRKHL 109 (158)
T ss_dssp HTCSCSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999988877543
No 7
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=12.12 E-value=41 Score=22.15 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhHhhhhhhhcCCCccccCChhhH
Q psy15815 7 LINNMLEVRSDAFKLCCLYQRPIARRVKNIGAW 39 (117)
Q Consensus 7 linN~iEir~Da~Kl~~~~rRP~p~~~~~IG~W 39 (117)
++|..+|-=+|. +...+.|...++.|+|.=
T Consensus 70 llNTAIE~vvD~---v~~e~h~lak~AKD~aaa 99 (121)
T 2kdc_A 70 ILNSAIEAVVDR---IGSEYHELSGRAKDMGSA 99 (121)
T ss_dssp THHHHHHHHHTT---CCCCSCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCccCHHHHHHHHHHHH
Confidence 689999999994 556889999999999963
No 8
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.87 E-value=92 Score=19.40 Aligned_cols=28 Identities=11% Similarity=0.456 Sum_probs=19.7
Q ss_pred hhhhhcCCCcccc-CChhhHHHHHHHHHH
Q psy15815 21 LCCLYQRPIARRV-KNIGAWQVLFLFVVF 48 (117)
Q Consensus 21 l~~~~rRP~p~~~-~~IG~W~~il~~i~~ 48 (117)
++..+|+|.+... ++++.|+.-+..=-|
T Consensus 10 l~~~~~~p~~~~~~~sV~eWL~~igL~qY 38 (97)
T 2dl0_A 10 LTEICRKPVSPGCISSVSDWLISIGLPMY 38 (97)
T ss_dssp CCSCCCCCCCCSCCCSHHHHHHHHTCGGG
T ss_pred ccccccCCCCccccCcHHHHHHHCCCHHH
Confidence 4556888887655 799999876654444
No 9
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=10.25 E-value=2e+02 Score=15.51 Aligned_cols=14 Identities=43% Similarity=0.403 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhc
Q psy15815 103 LAKLNYQSRQALKN 116 (117)
Q Consensus 103 ~~r~~~~~~~~l~~ 116 (117)
+++|++..+|.+++
T Consensus 29 Lq~EN~mLRqvl~n 42 (42)
T 2oqq_A 29 LQNENQMLRHILKN 42 (42)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHhcC
Confidence 56778888887764
No 10
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=9.54 E-value=1.9e+02 Score=15.49 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q psy15815 99 VRVALAKLNY 108 (117)
Q Consensus 99 V~~~~~r~~~ 108 (117)
++..+.|++|
T Consensus 10 L~~~l~~Q~~ 19 (43)
T 2vgp_C 10 LTQAIRQQYY 19 (43)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5555555543
Done!