RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15815
         (117 letters)



>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel.  The
           family carries eight putative transmembrane domains,
           and, although it has no similarity to other known
           channel proteins, it is clearly a calcium-activated
           ionic channel. It is expressed in various secretory
           epithelia, the retina and sensory neurons, and mediates
           receptor-activated chloride currents in diverse
           physiological processes.
          Length = 449

 Score = 94.2 bits (235), Expect = 6e-24
 Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 8/116 (6%)

Query: 1   MAAFWALINNMLEVRSDAFKLCCLYQRPIARRVKNIGAWQVLFLFVVFEHIL---LLLRY 57
           +A   ALINN++E+RSDAFKLC  ++RP+ +R  +IG W  +   + +  ++    L+ +
Sbjct: 334 LAPLLALINNIIEIRSDAFKLCYEFRRPVPQRADSIGPWLDILELLSWLSVITNAGLIAF 393

Query: 58  VLVYCISDKPHW-----VLFLFVVFEHILLLLRYVLVYCISDKPHWVRVALAKLNY 108
                +    +       L  F++ EH++LLL++++ + I D P WVR+ L +  Y
Sbjct: 394 TSTGTLKGYLNDHLLAARLLFFLILEHVVLLLKFLIAWLIPDIPEWVRIKLKREKY 449


>gnl|CDD|152822 pfam12387, Peptidase_C74, Pestivirus NS2 peptidase.  The
          pestivirus NS2 peptidase is responsible for single
          cleavage between NS2 and NS3 of the bovine viral
          diarrhea virus polyprotein, a cleavage that is
          correlated with cytopathogenicity. The peptidase is
          activated by its interaction with 'J-domain protein
          interacting with viral protein' - Jiv.
          Length = 200

 Score = 29.7 bits (67), Expect = 0.22
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 51 ILLLLRYVLVYCISDKPHWVLFLFVVFEHILLLLRYVL 88
          IL LLR VL+ CIS K   V  L+++ E    + R ++
Sbjct: 39 ILPLLRAVLISCISSKWQVVYLLYLIIELSYYMHRKII 76


>gnl|CDD|217709 pfam03744, BioW, 6-carboxyhexanoate--CoA ligase.  This family
           contains the enzyme 6-carboxyhexanoate--CoA ligase
           EC:6.2.1.14. This enzyme is involved in the first step
           of biotin synthesis, where it converts pimelate into
           pimeloyl-CoA. The enzyme requires magnesium as a
           cofactor and forms a homodimer.
          Length = 232

 Score = 27.2 bits (61), Expect = 1.7
 Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)

Query: 91  CISDKPHWVR--VALAKLNYQSRQALKN 116
           C SD P +    VA  KL Y     LK 
Sbjct: 172 CWSDDPDYTTGYVATKKLGYFRITNLKE 199


>gnl|CDD|235174 PRK03911, PRK03911, heat-inducible transcription repressor;
           Provisional.
          Length = 260

 Score = 26.9 bits (60), Expect = 2.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 10  NMLEVRSDAFKLCCLYQRPIARRVKNIGAWQVLFLFVVFEHILLLLRY 57
             L+  S  F+L CL + P + R+K +      FL + FE   ++L+Y
Sbjct: 90  KRLKELSKEFELFCLVKGPSSERLKEVLNLNDRFLILDFEAFEIVLKY 137


>gnl|CDD|116179 pfam07560, DUF1539, Domain of Unknown Function (DUF1539). 
          Length = 126

 Score = 26.2 bits (58), Expect = 2.8
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 5/37 (13%)

Query: 81  LLLLRYVLVYCISDKPHWVRVALAKLNYQSRQALKNQ 117
           L LL Y+  Y     P WV V      +Q   A+ N 
Sbjct: 87  LELLNYIASYADRCPPTWVEVI-----FQELNAIYNT 118


>gnl|CDD|179280 PRK01322, PRK01322, 6-carboxyhexanoate--CoA ligase; Provisional.
          Length = 242

 Score = 26.0 bits (58), Expect = 5.0
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 2/29 (6%)

Query: 90  YCISDKPHWVR--VALAKLNYQSRQALKN 116
            C SD P +    VA  KL Y     LK 
Sbjct: 178 LCWSDDPDYTTGYVATKKLGYHRITNLKE 206


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.337    0.146    0.485 

Gapped
Lambda     K      H
   0.267   0.0801    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,196,154
Number of extensions: 571191
Number of successful extensions: 963
Number of sequences better than 10.0: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 49
Length of query: 117
Length of database: 10,937,602
Length adjustment: 80
Effective length of query: 37
Effective length of database: 7,389,282
Effective search space: 273403434
Effective search space used: 273403434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 53 (24.1 bits)