Query psy15816
Match_columns 171
No_of_seqs 185 out of 1205
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 22:04:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2532|consensus 99.9 2.5E-21 5.5E-26 168.6 9.7 134 19-155 326-462 (466)
2 TIGR00894 2A0114euk Na(+)-depe 99.4 4.8E-12 1E-16 109.0 12.1 106 46-154 359-464 (465)
3 COG2271 UhpC Sugar phosphate p 98.4 1.4E-07 3.1E-12 81.1 2.3 123 22-151 90-217 (448)
4 PLN00028 nitrate transmembrane 98.2 2E-05 4.4E-10 68.7 10.6 73 63-142 363-435 (476)
5 PF07690 MFS_1: Major Facilita 98.1 2.3E-05 5.1E-10 63.7 10.2 115 18-138 54-170 (352)
6 TIGR00900 2A0121 H+ Antiporter 98.0 5.7E-05 1.2E-09 61.7 9.7 116 18-139 56-178 (365)
7 PRK11663 regulatory protein Uh 98.0 3.1E-05 6.8E-10 66.4 8.4 114 18-137 80-195 (434)
8 TIGR00881 2A0104 phosphoglycer 98.0 9E-06 2E-10 66.6 4.8 121 18-145 52-176 (379)
9 TIGR00893 2A0114 d-galactonate 98.0 3.7E-05 8E-10 63.0 8.1 116 18-140 51-169 (399)
10 PRK09556 uhpT sugar phosphate 97.9 7.3E-05 1.6E-09 64.8 9.3 70 71-140 372-449 (467)
11 TIGR00880 2_A_01_02 Multidrug 97.9 0.0002 4.3E-09 50.1 9.3 114 20-139 22-137 (141)
12 TIGR02332 HpaX 4-hydroxyphenyl 97.8 0.00019 4.1E-09 61.3 9.8 122 18-140 65-189 (412)
13 PRK03699 putative transporter; 97.7 0.00047 1E-08 58.2 11.5 114 18-137 64-180 (394)
14 PRK11010 ampG muropeptide tran 97.7 0.00035 7.7E-09 61.3 11.1 73 62-140 330-403 (491)
15 TIGR01299 synapt_SV2 synaptic 97.7 0.00022 4.8E-09 66.0 9.8 116 17-139 616-733 (742)
16 TIGR00892 2A0113 monocarboxyla 97.7 0.00012 2.6E-09 63.4 7.7 62 68-134 353-415 (455)
17 TIGR00895 2A0115 benzoate tran 97.7 0.00013 2.7E-09 60.3 7.4 115 18-138 74-190 (398)
18 TIGR00893 2A0114 d-galactonate 97.7 0.00077 1.7E-08 55.1 11.7 68 66-138 329-397 (399)
19 TIGR00894 2A0114euk Na(+)-depe 97.7 0.00018 3.9E-09 62.0 8.2 117 18-142 98-221 (465)
20 PRK09874 drug efflux system pr 97.7 0.00025 5.5E-09 59.4 8.9 63 72-140 130-193 (408)
21 TIGR00712 glpT glycerol-3-phos 97.7 0.00013 2.8E-09 62.7 7.0 67 71-142 141-208 (438)
22 PRK09952 shikimate transporter 97.6 0.00064 1.4E-08 58.5 10.8 73 63-139 358-432 (438)
23 PRK10473 multidrug efflux syst 97.6 0.00071 1.5E-08 56.8 10.8 114 18-137 60-175 (392)
24 PRK10054 putative transporter; 97.6 0.00022 4.8E-09 60.6 7.8 110 18-135 65-177 (395)
25 TIGR00891 2A0112 putative sial 97.6 0.00034 7.5E-09 58.1 8.8 111 18-133 69-182 (405)
26 TIGR00710 efflux_Bcr_CflA drug 97.6 0.00042 9.1E-09 57.3 9.0 115 19-139 63-179 (385)
27 PRK09705 cynX putative cyanate 97.6 0.00035 7.6E-09 59.2 8.7 64 72-140 316-381 (393)
28 PRK11102 bicyclomycin/multidru 97.6 0.00061 1.3E-08 56.6 9.6 115 19-139 49-165 (377)
29 PRK05122 major facilitator sup 97.6 0.0008 1.7E-08 56.5 10.1 62 73-140 327-389 (399)
30 PRK10642 proline/glycine betai 97.5 0.00093 2E-08 58.3 10.4 72 71-149 365-437 (490)
31 PRK11551 putative 3-hydroxyphe 97.5 0.0015 3.3E-08 54.9 11.2 66 69-139 329-395 (406)
32 KOG2504|consensus 97.5 0.00027 5.8E-09 62.8 6.9 76 72-153 412-488 (509)
33 PRK09874 drug efflux system pr 97.5 0.00021 4.6E-09 59.9 6.0 67 67-139 330-397 (408)
34 TIGR00903 2A0129 major facilit 97.5 0.0013 2.9E-08 55.7 10.8 61 75-141 105-166 (368)
35 TIGR00890 2A0111 Oxalate/Forma 97.5 0.00057 1.2E-08 55.9 8.2 116 18-139 60-176 (377)
36 TIGR00924 yjdL_sub1_fam amino 97.5 0.00086 1.9E-08 58.7 9.7 116 18-140 70-192 (475)
37 TIGR00899 2A0120 sugar efflux 97.5 0.00056 1.2E-08 56.5 8.1 64 70-139 310-373 (375)
38 PRK15011 sugar efflux transpor 97.4 0.00077 1.7E-08 57.0 8.7 64 70-139 327-390 (393)
39 PRK11551 putative 3-hydroxyphe 97.4 0.0015 3.2E-08 55.0 10.4 112 18-136 72-186 (406)
40 KOG2532|consensus 97.4 0.00094 2E-08 58.8 8.8 67 75-146 155-222 (466)
41 TIGR00889 2A0110 nucleoside tr 97.4 0.0023 4.9E-08 55.0 10.8 71 71-141 331-403 (418)
42 TIGR00879 SP MFS transporter, 97.4 0.0012 2.6E-08 55.6 8.8 66 69-140 404-470 (481)
43 PRK11663 regulatory protein Uh 97.3 0.0012 2.6E-08 56.7 8.8 63 72-140 361-424 (434)
44 PRK15403 multidrug efflux syst 97.3 0.0022 4.7E-08 54.9 10.2 111 18-135 73-186 (413)
45 PRK10489 enterobactin exporter 97.3 0.0015 3.2E-08 55.5 9.2 66 69-140 333-400 (417)
46 PRK15462 dipeptide/tripeptide 97.3 0.0014 3E-08 58.1 9.2 116 18-139 67-188 (493)
47 TIGR00711 efflux_EmrB drug res 97.3 0.0014 3.1E-08 56.2 9.1 115 18-138 59-175 (485)
48 PRK11646 multidrug resistance 97.3 0.0016 3.4E-08 55.4 9.1 115 18-139 68-184 (400)
49 PRK03545 putative arabinose tr 97.3 0.00085 1.8E-08 56.4 7.4 113 18-137 66-181 (390)
50 cd06174 MFS The Major Facilita 97.3 0.0037 8E-08 50.3 10.8 112 20-138 235-350 (352)
51 TIGR00898 2A0119 cation transp 97.3 0.0024 5.3E-08 55.4 10.3 114 18-139 377-494 (505)
52 TIGR00896 CynX cyanate transpo 97.3 0.0026 5.7E-08 52.6 10.1 113 18-134 57-169 (355)
53 TIGR00879 SP MFS transporter, 97.3 0.0029 6.2E-08 53.3 10.2 62 69-136 148-213 (481)
54 PRK12382 putative transporter; 97.3 0.0011 2.4E-08 55.6 7.6 65 70-140 324-389 (392)
55 PRK03545 putative arabinose tr 97.3 0.0034 7.4E-08 52.7 10.4 67 69-141 315-381 (390)
56 PRK09705 cynX putative cyanate 97.2 0.0029 6.3E-08 53.6 9.9 117 18-139 66-183 (393)
57 PRK03893 putative sialic acid 97.2 0.0021 4.6E-08 55.5 9.3 56 70-131 388-444 (496)
58 PRK11273 glpT sn-glycerol-3-ph 97.2 0.0013 2.9E-08 56.6 7.9 117 19-141 86-209 (452)
59 PRK10213 nepI ribonucleoside t 97.2 0.0019 4.1E-08 54.8 8.7 110 19-134 78-189 (394)
60 PRK10504 putative transporter; 97.2 0.0031 6.6E-08 54.3 10.0 65 69-139 119-184 (471)
61 PRK14995 methyl viologen resis 97.2 0.0045 9.7E-08 54.2 11.2 116 18-139 63-181 (495)
62 PLN00028 nitrate transmembrane 97.2 0.0012 2.7E-08 57.5 7.3 121 18-142 93-221 (476)
63 PRK15402 multidrug efflux syst 97.2 0.0036 7.8E-08 52.8 9.8 112 19-136 71-184 (406)
64 TIGR02332 HpaX 4-hydroxyphenyl 97.2 0.0021 4.5E-08 54.9 8.3 57 69-130 354-411 (412)
65 PRK09528 lacY galactoside perm 97.2 0.00088 1.9E-08 57.0 5.9 62 74-141 341-404 (420)
66 TIGR00887 2A0109 phosphate:H+ 97.2 0.0033 7.1E-08 55.0 9.6 119 18-136 357-485 (502)
67 PRK12307 putative sialic acid 97.1 0.0014 3.1E-08 55.4 7.0 103 18-127 75-180 (426)
68 TIGR00901 2A0125 AmpG-related 97.1 0.0048 1E-07 51.0 9.9 69 67-135 102-173 (356)
69 TIGR00887 2A0109 phosphate:H+ 97.1 0.006 1.3E-07 53.4 11.0 128 18-147 78-230 (502)
70 TIGR00899 2A0120 sugar efflux 97.1 0.0035 7.7E-08 51.7 9.1 50 85-140 127-176 (375)
71 COG2223 NarK Nitrate/nitrite t 97.1 0.0014 3E-08 56.6 6.7 79 59-142 325-403 (417)
72 TIGR00898 2A0119 cation transp 97.1 0.0018 4E-08 56.2 7.6 112 18-138 149-262 (505)
73 PRK11043 putative transporter; 97.1 0.0028 6.2E-08 53.3 8.5 63 71-139 117-180 (401)
74 PRK03893 putative sialic acid 97.1 0.0033 7.1E-08 54.4 9.0 104 18-128 77-183 (496)
75 PRK11273 glpT sn-glycerol-3-ph 97.1 0.0034 7.4E-08 54.1 9.0 76 73-162 372-449 (452)
76 PRK10406 alpha-ketoglutarate t 97.1 0.0038 8.2E-08 53.5 9.0 116 18-139 301-423 (432)
77 TIGR00903 2A0129 major facilit 97.0 0.0038 8.1E-08 52.9 8.6 84 47-138 279-363 (368)
78 TIGR01299 synapt_SV2 synaptic 97.0 0.0032 7E-08 58.4 8.7 128 18-147 224-360 (742)
79 TIGR00886 2A0108 nitrite extru 97.0 0.0052 1.1E-07 50.6 9.2 120 18-139 59-187 (366)
80 KOG2533|consensus 97.0 0.0019 4.2E-08 57.2 7.0 75 78-152 165-240 (495)
81 PRK10077 xylE D-xylose transpo 97.0 0.015 3.3E-07 49.9 12.4 66 68-139 384-456 (479)
82 KOG4686|consensus 97.0 0.0086 1.9E-07 50.2 10.0 62 46-110 353-415 (459)
83 TIGR00890 2A0111 Oxalate/Forma 97.0 0.0045 9.8E-08 50.5 8.5 58 70-133 317-375 (377)
84 TIGR00897 2A0118 polyol permea 97.0 0.0059 1.3E-07 51.7 9.2 62 71-138 338-399 (402)
85 cd06174 MFS The Major Facilita 96.9 0.003 6.5E-08 50.9 6.8 112 19-136 57-170 (352)
86 TIGR00892 2A0113 monocarboxyla 96.9 0.0026 5.7E-08 55.1 6.8 60 74-139 134-193 (455)
87 PRK15034 nitrate/nitrite trans 96.9 0.0039 8.4E-08 54.9 7.9 55 80-139 399-453 (462)
88 PRK09584 tppB putative tripept 96.9 0.0059 1.3E-07 53.8 9.0 53 81-139 148-200 (500)
89 PRK09556 uhpT sugar phosphate 96.9 0.00067 1.4E-08 58.8 3.0 75 67-144 141-216 (467)
90 PRK10207 dipeptide/tripeptide 96.9 0.0066 1.4E-07 53.5 9.2 116 18-139 72-193 (489)
91 PRK10091 MFS transport protein 96.9 0.01 2.2E-07 49.9 10.0 109 19-134 61-172 (382)
92 PRK11652 emrD multidrug resist 96.9 0.0091 2E-07 50.1 9.5 61 73-139 121-182 (394)
93 PRK03633 putative MFS family t 96.9 0.011 2.3E-07 49.7 9.9 68 69-142 306-374 (381)
94 PRK11902 ampG muropeptide tran 96.9 0.013 2.8E-07 49.5 10.5 65 67-136 113-178 (402)
95 PRK03699 putative transporter; 96.8 0.0055 1.2E-07 51.7 7.7 64 70-139 316-379 (394)
96 PRK10489 enterobactin exporter 96.8 0.0044 9.6E-08 52.6 6.8 63 70-138 132-195 (417)
97 TIGR00885 fucP L-fucose:H+ sym 96.7 0.024 5.2E-07 48.6 11.0 119 18-136 60-203 (410)
98 PRK15011 sugar efflux transpor 96.6 0.015 3.1E-07 49.2 8.9 54 82-141 142-195 (393)
99 PF06609 TRI12: Fungal trichot 96.6 0.023 5E-07 51.6 10.4 113 17-140 99-217 (599)
100 PRK09528 lacY galactoside perm 96.6 0.0039 8.4E-08 53.0 5.2 58 81-145 139-196 (420)
101 PRK10054 putative transporter; 96.6 0.0075 1.6E-07 51.2 7.0 73 70-151 320-393 (395)
102 PRK06814 acylglycerophosphoeth 96.6 0.011 2.3E-07 56.8 8.6 71 63-139 123-194 (1140)
103 TIGR00882 2A0105 oligosacchari 96.5 0.0037 8E-08 52.6 4.6 49 82-137 132-180 (396)
104 TIGR00891 2A0112 putative sial 96.5 0.0094 2E-07 49.4 7.0 52 69-125 349-401 (405)
105 PF05977 MFS_3: Transmembrane 96.5 0.017 3.7E-07 51.6 8.8 88 46-139 305-393 (524)
106 PRK10642 proline/glycine betai 96.5 0.0071 1.5E-07 52.8 6.2 112 18-132 79-205 (490)
107 KOG0255|consensus 96.5 0.013 2.8E-07 51.4 7.9 120 18-148 140-261 (521)
108 PRK10077 xylE D-xylose transpo 96.4 0.021 4.6E-07 49.0 9.0 69 70-138 142-213 (479)
109 KOG0252|consensus 96.4 0.0057 1.2E-07 53.9 5.1 127 17-144 369-502 (538)
110 PTZ00207 hypothetical protein; 96.4 0.025 5.3E-07 51.3 9.3 70 70-147 142-213 (591)
111 COG2814 AraJ Arabinose efflux 96.4 0.037 8.1E-07 47.8 10.0 116 16-141 68-189 (394)
112 TIGR01272 gluP glucose/galacto 96.4 0.017 3.7E-07 47.8 7.7 74 70-143 32-116 (310)
113 PRK12307 putative sialic acid 96.3 0.025 5.5E-07 47.8 8.8 40 70-109 343-383 (426)
114 TIGR01301 GPH_sucrose GPH fami 96.3 0.03 6.5E-07 49.5 9.3 85 61-146 127-223 (477)
115 PRK09952 shikimate transporter 96.3 0.014 3.1E-07 50.2 7.1 113 18-131 86-211 (438)
116 TIGR00897 2A0118 polyol permea 96.3 0.081 1.7E-06 44.8 11.6 36 74-109 131-168 (402)
117 PRK11646 multidrug resistance 96.3 0.013 2.7E-07 49.9 6.6 68 68-137 317-385 (400)
118 PRK10091 MFS transport protein 96.3 0.028 6E-07 47.2 8.6 54 87-145 328-381 (382)
119 COG2271 UhpC Sugar phosphate p 96.2 0.02 4.3E-07 49.8 7.5 65 72-142 370-436 (448)
120 PRK11010 ampG muropeptide tran 96.2 0.071 1.5E-06 46.9 10.9 66 67-137 126-192 (491)
121 TIGR00883 2A0106 metabolite-pr 96.1 0.034 7.4E-07 45.6 8.0 116 18-134 57-185 (394)
122 TIGR00792 gph sugar (Glycoside 96.1 0.054 1.2E-06 45.8 9.4 44 66-109 329-380 (437)
123 KOG2615|consensus 96.0 0.0076 1.7E-07 52.0 4.0 124 18-144 90-216 (451)
124 PF13347 MFS_2: MFS/sugar tran 96.0 0.026 5.6E-07 48.3 7.4 78 65-142 120-200 (428)
125 PRK10406 alpha-ketoglutarate t 96.0 0.045 9.8E-07 46.8 8.7 113 19-132 86-211 (432)
126 PF03825 Nuc_H_symport: Nucleo 96.0 0.076 1.6E-06 45.8 10.0 94 49-142 298-397 (400)
127 PRK11195 lysophospholipid tran 96.0 0.031 6.7E-07 47.4 7.6 66 67-139 107-173 (393)
128 PRK08633 2-acyl-glycerophospho 96.0 0.038 8.1E-07 52.8 8.7 90 20-109 71-165 (1146)
129 TIGR00712 glpT glycerol-3-phos 95.9 0.025 5.3E-07 48.5 6.4 65 73-143 370-436 (438)
130 PF11700 ATG22: Vacuole efflux 95.8 0.056 1.2E-06 47.7 8.5 65 70-139 402-467 (477)
131 TIGR02718 sider_RhtX_FptX side 95.8 0.081 1.7E-06 44.4 9.2 66 63-134 318-385 (390)
132 PRK11195 lysophospholipid tran 95.7 0.056 1.2E-06 45.8 8.0 63 62-129 307-371 (393)
133 TIGR00882 2A0105 oligosacchari 95.7 0.036 7.8E-07 46.6 6.8 52 79-136 339-391 (396)
134 TIGR00902 2A0127 phenyl propri 95.4 0.093 2E-06 44.1 8.2 47 79-131 124-170 (382)
135 TIGR00792 gph sugar (Glycoside 95.4 0.16 3.5E-06 43.0 9.8 73 67-139 118-193 (437)
136 PRK10133 L-fucose transporter; 95.4 0.14 3E-06 44.3 9.5 89 18-106 83-176 (438)
137 TIGR00805 oat sodium-independe 95.4 0.048 1E-06 49.7 6.8 87 55-141 175-282 (633)
138 TIGR01272 gluP glucose/galacto 95.4 0.099 2.2E-06 43.2 8.1 55 63-124 245-299 (310)
139 PRK11128 putative 3-phenylprop 95.3 0.16 3.4E-06 42.7 9.3 48 81-134 126-173 (382)
140 PRK11043 putative transporter; 95.2 0.33 7.1E-06 40.8 11.0 43 67-109 315-357 (401)
141 PRK12382 putative transporter; 95.2 0.18 3.8E-06 42.2 9.2 50 73-128 137-187 (392)
142 PRK15075 citrate-proton sympor 95.2 0.087 1.9E-06 45.1 7.4 108 18-126 78-198 (434)
143 TIGR00895 2A0115 benzoate tran 95.2 0.11 2.4E-06 42.7 7.8 45 62-106 352-397 (398)
144 KOG1330|consensus 95.1 0.0089 1.9E-07 52.5 1.1 68 71-143 144-213 (493)
145 TIGR00883 2A0106 metabolite-pr 94.9 0.067 1.4E-06 43.9 5.9 61 65-130 329-391 (394)
146 COG2814 AraJ Arabinose efflux 94.9 0.2 4.4E-06 43.3 8.8 96 41-142 293-388 (394)
147 KOG3764|consensus 94.8 0.17 3.8E-06 44.0 8.2 111 19-139 129-246 (464)
148 PRK10504 putative transporter; 94.8 0.18 3.9E-06 43.4 8.4 41 68-108 373-414 (471)
149 PRK15075 citrate-proton sympor 94.8 0.27 5.8E-06 42.1 9.3 44 67-110 350-395 (434)
150 TIGR00900 2A0121 H+ Antiporter 94.7 0.15 3.3E-06 41.3 7.4 43 67-109 320-363 (365)
151 PRK11902 ampG muropeptide tran 94.6 0.56 1.2E-05 39.6 10.9 64 67-136 322-386 (402)
152 PRK05122 major facilitator sup 94.6 0.16 3.6E-06 42.5 7.5 53 74-132 138-191 (399)
153 PRK15402 multidrug efflux syst 94.5 0.83 1.8E-05 38.4 11.5 38 73-110 334-371 (406)
154 KOG0569|consensus 94.4 0.32 6.8E-06 43.2 9.0 115 16-139 80-204 (485)
155 PRK11652 emrD multidrug resist 94.4 1.3 2.7E-05 37.1 12.4 47 63-109 314-360 (394)
156 KOG0253|consensus 94.2 0.12 2.7E-06 44.8 5.9 114 18-139 403-518 (528)
157 TIGR00881 2A0104 phosphoglycer 94.0 0.13 2.8E-06 41.9 5.5 47 70-122 332-379 (379)
158 PRK10429 melibiose:sodium symp 93.9 0.13 2.7E-06 44.8 5.5 30 79-108 363-392 (473)
159 TIGR00788 fbt folate/biopterin 93.9 0.35 7.6E-06 42.3 8.3 56 67-123 370-426 (468)
160 COG0738 FucP Fucose permease [ 93.9 0.4 8.7E-06 41.7 8.3 126 18-146 70-216 (422)
161 PRK08633 2-acyl-glycerophospho 93.8 0.19 4.1E-06 48.1 7.0 62 67-133 341-403 (1146)
162 KOG2504|consensus 93.8 0.17 3.6E-06 45.2 6.2 57 78-140 165-221 (509)
163 PRK03633 putative MFS family t 93.8 2.1 4.5E-05 35.7 12.6 89 17-109 62-156 (381)
164 PRK15034 nitrate/nitrite trans 93.6 0.65 1.4E-05 41.0 9.4 76 67-142 146-234 (462)
165 PRK06814 acylglycerophosphoeth 93.4 0.14 3E-06 49.2 5.4 59 67-130 353-412 (1140)
166 PF05977 MFS_3: Transmembrane 93.3 0.42 9.1E-06 42.7 8.0 68 62-135 117-185 (524)
167 TIGR00769 AAA ADP/ATP carrier 93.2 0.55 1.2E-05 41.6 8.4 84 57-140 137-228 (472)
168 TIGR02718 sider_RhtX_FptX side 93.2 1.1 2.5E-05 37.4 10.0 53 81-139 131-183 (390)
169 PF00854 PTR2: POT family; In 93.1 0.7 1.5E-05 38.8 8.7 54 80-139 69-122 (372)
170 COG2223 NarK Nitrate/nitrite t 92.9 0.48 1E-05 41.2 7.4 82 59-146 115-199 (417)
171 PRK09669 putative symporter Ya 92.8 2.2 4.8E-05 36.5 11.5 69 67-135 128-199 (444)
172 TIGR00896 CynX cyanate transpo 92.8 0.28 6.1E-06 40.4 5.8 32 79-110 318-349 (355)
173 TIGR00902 2A0127 phenyl propri 92.7 0.96 2.1E-05 37.9 9.0 59 70-135 315-374 (382)
174 PRK11102 bicyclomycin/multidru 92.7 2.7 5.8E-05 34.6 11.5 35 70-104 309-344 (377)
175 PRK10213 nepI ribonucleoside t 92.5 1.5 3.4E-05 37.0 10.0 55 74-134 331-385 (394)
176 TIGR00806 rfc RFC reduced fola 92.3 1.5 3.2E-05 39.2 9.8 57 78-141 145-204 (511)
177 TIGR00710 efflux_Bcr_CflA drug 92.1 2.5 5.4E-05 34.7 10.6 39 68-106 320-358 (385)
178 PRK11128 putative 3-phenylprop 92.0 1.3 2.8E-05 37.1 8.9 53 75-134 320-373 (382)
179 COG2807 CynX Cyanate permease 91.9 0.79 1.7E-05 39.5 7.4 58 77-139 327-384 (395)
180 TIGR00885 fucP L-fucose:H+ sym 91.9 0.94 2E-05 38.8 8.0 68 60-128 333-400 (410)
181 COG2270 Permeases of the major 91.8 0.26 5.6E-06 43.0 4.4 68 67-139 356-428 (438)
182 TIGR00924 yjdL_sub1_fam amino 91.6 1.2 2.7E-05 38.9 8.5 68 66-139 399-467 (475)
183 PRK10429 melibiose:sodium symp 91.5 1 2.2E-05 39.2 8.0 69 66-134 124-195 (473)
184 PRK10133 L-fucose transporter; 91.5 0.97 2.1E-05 39.0 7.7 69 54-128 353-421 (438)
185 PF11700 ATG22: Vacuole efflux 91.1 3 6.4E-05 36.9 10.5 100 46-145 124-252 (477)
186 KOG0255|consensus 90.9 5.8 0.00012 34.7 12.1 86 21-106 375-465 (521)
187 PRK10473 multidrug efflux syst 90.1 3.3 7.2E-05 34.5 9.6 26 79-104 323-348 (392)
188 COG3104 PTR2 Dipeptide/tripept 89.6 0.24 5.3E-06 43.9 2.4 54 82-141 154-207 (498)
189 PF07690 MFS_1: Major Facilita 89.6 1.6 3.4E-05 35.2 7.0 40 61-100 312-352 (352)
190 PF03092 BT1: BT1 family; Int 89.6 1.7 3.7E-05 37.7 7.6 56 78-139 119-174 (433)
191 PRK10207 dipeptide/tripeptide 89.6 3.6 7.7E-05 36.3 9.7 70 70-139 401-475 (489)
192 PF01306 LacY_symp: LacY proto 88.8 2.5 5.5E-05 36.8 8.0 62 78-145 343-406 (412)
193 KOG0254|consensus 88.6 5.3 0.00011 35.2 10.1 109 18-135 111-225 (513)
194 PF03219 TLC: TLC ATP/ADP tran 88.4 1.2 2.5E-05 39.8 5.8 71 68-138 164-239 (491)
195 TIGR00788 fbt folate/biopterin 88.2 1.1 2.5E-05 39.1 5.6 42 92-139 167-208 (468)
196 PF01770 Folate_carrier: Reduc 88.0 10 0.00022 33.2 11.2 126 14-144 59-186 (412)
197 KOG2816|consensus 88.0 1.6 3.5E-05 38.5 6.4 113 18-139 84-197 (463)
198 TIGR00886 2A0108 nitrite extru 86.9 1.4 3.1E-05 36.0 5.2 49 48-96 318-366 (366)
199 TIGR00711 efflux_EmrB drug res 86.5 2.7 6E-05 35.9 6.9 37 73-109 373-410 (485)
200 PRK11462 putative transporter; 85.8 10 0.00022 32.9 10.2 70 65-134 126-198 (460)
201 COG2807 CynX Cyanate permease 85.6 6.3 0.00014 34.1 8.4 57 78-139 129-185 (395)
202 PF06813 Nodulin-like: Nodulin 85.2 9.5 0.00021 30.9 9.0 42 67-109 116-157 (250)
203 PRK09848 glucuronide transport 85.1 2.1 4.6E-05 36.6 5.6 42 67-108 338-387 (448)
204 PF00083 Sugar_tr: Sugar (and 84.9 0.025 5.3E-07 48.3 -6.5 112 19-134 69-186 (451)
205 TIGR00926 2A1704 Peptide:H+ sy 84.7 16 0.00035 33.7 11.3 60 81-140 122-182 (654)
206 PF06609 TRI12: Fungal trichot 82.7 6.2 0.00013 36.1 7.6 57 46-102 403-460 (599)
207 PRK09669 putative symporter Ya 82.3 8.3 0.00018 33.0 8.1 42 67-108 338-387 (444)
208 PF03209 PUCC: PUCC protein; 81.3 12 0.00026 32.6 8.6 81 63-143 316-401 (403)
209 PRK14995 methyl viologen resis 80.7 4.7 0.0001 35.2 6.1 90 19-108 318-412 (495)
210 KOG1479|consensus 79.2 15 0.00032 32.1 8.4 76 62-142 131-206 (406)
211 PF07672 MFS_Mycoplasma: Mycop 78.5 2.1 4.5E-05 35.1 2.9 27 116-142 38-64 (267)
212 PF00083 Sugar_tr: Sugar (and 77.2 0.18 3.8E-06 43.0 -3.9 116 18-139 308-435 (451)
213 PF03209 PUCC: PUCC protein; 76.1 21 0.00044 31.2 8.4 60 68-130 109-169 (403)
214 PRK09584 tppB putative tripept 74.3 16 0.00034 32.2 7.5 68 70-138 404-477 (500)
215 PF06645 SPC12: Microsomal sig 73.7 3.8 8.3E-05 27.1 2.7 47 101-155 25-74 (76)
216 TIGR01301 GPH_sucrose GPH fami 73.4 18 0.00039 32.1 7.6 56 80-139 415-470 (477)
217 PF13347 MFS_2: MFS/sugar tran 73.4 13 0.00029 31.5 6.7 91 18-108 282-383 (428)
218 KOG2533|consensus 72.9 15 0.00033 32.8 7.1 42 77-124 397-440 (495)
219 PF15061 DUF4538: Domain of un 70.5 1.7 3.6E-05 27.3 0.4 27 116-142 3-29 (58)
220 KOG3626|consensus 70.0 19 0.00042 33.8 7.2 94 51-144 236-347 (735)
221 COG2211 MelB Na+/melibiose sym 67.7 16 0.00035 32.5 6.0 91 17-107 293-394 (467)
222 PF12270 Cyt_c_ox_IV: Cytochro 67.0 19 0.0004 26.7 5.3 72 82-164 5-78 (137)
223 TIGR00901 2A0125 AmpG-related 66.9 27 0.00058 28.5 7.0 31 63-93 324-355 (356)
224 PF03092 BT1: BT1 family; Int 66.7 17 0.00036 31.5 5.9 38 72-109 342-380 (433)
225 COG2211 MelB Na+/melibiose sym 65.5 70 0.0015 28.5 9.6 79 67-146 131-212 (467)
226 PF11947 DUF3464: Protein of u 61.9 25 0.00053 26.5 5.2 77 18-97 56-144 (153)
227 COG0738 FucP Fucose permease [ 61.7 16 0.00034 32.0 4.7 61 49-110 325-385 (422)
228 PF07857 DUF1632: CEO family ( 60.8 91 0.002 25.4 9.3 25 119-144 114-139 (254)
229 KOG1330|consensus 60.1 30 0.00064 30.9 6.2 33 77-109 379-412 (493)
230 KOG4112|consensus 59.9 23 0.0005 24.5 4.3 75 71-156 13-90 (101)
231 PF01733 Nucleoside_tran: Nucl 59.2 3.1 6.7E-05 34.4 0.0 71 66-141 15-85 (309)
232 KOG3764|consensus 58.0 47 0.001 29.4 6.9 52 82-139 402-453 (464)
233 PF06963 FPN1: Ferroportin1 (F 57.2 1.2E+02 0.0025 26.7 9.4 49 81-135 147-195 (432)
234 PF08611 DUF1774: Fungal prote 56.7 13 0.00029 25.8 2.8 35 116-150 50-84 (97)
235 PF05961 Chordopox_A13L: Chord 56.1 17 0.00036 23.6 2.9 28 121-148 5-32 (68)
236 PF03137 OATP: Organic Anion T 55.7 3.8 8.2E-05 36.8 -0.0 92 51-142 140-252 (539)
237 KOG3762|consensus 55.1 30 0.00064 31.7 5.4 118 14-137 420-544 (618)
238 KOG2563|consensus 54.8 26 0.00057 31.1 5.0 52 76-132 293-345 (480)
239 KOG2615|consensus 54.4 69 0.0015 28.2 7.3 40 71-110 375-415 (451)
240 KOG2816|consensus 54.1 34 0.00074 30.2 5.7 90 18-109 300-392 (463)
241 PF10183 ESSS: ESSS subunit of 53.5 4.8 0.0001 28.2 0.2 38 115-152 56-94 (105)
242 TIGR00939 2a57 Equilibrative N 51.6 24 0.00051 30.9 4.3 74 63-140 121-196 (437)
243 PF06027 DUF914: Eukaryotic pr 51.5 13 0.00029 31.4 2.6 22 118-139 285-306 (334)
244 PF06783 UPF0239: Uncharacteri 48.6 39 0.00084 22.9 3.9 21 119-139 23-43 (85)
245 PRK15403 multidrug efflux syst 44.9 1.9E+02 0.0042 24.4 9.5 30 81-110 345-374 (413)
246 TIGR00889 2A0110 nucleoside tr 44.7 79 0.0017 26.9 6.4 38 90-134 137-174 (418)
247 PTZ00370 STEVOR; Provisional 44.2 58 0.0013 27.1 5.1 32 117-148 256-287 (296)
248 PRK11462 putative transporter; 44.0 2.1E+02 0.0046 24.7 9.3 27 81-107 359-385 (460)
249 KOG2325|consensus 43.1 2.4E+02 0.0052 25.3 9.2 32 115-146 204-235 (488)
250 cd00922 Cyt_c_Oxidase_IV Cytoc 42.8 27 0.00059 25.6 2.8 55 116-170 72-131 (136)
251 KOG3626|consensus 41.5 78 0.0017 29.9 6.1 43 67-109 606-649 (735)
252 PHA03049 IMV membrane protein; 41.5 39 0.00084 21.8 2.9 30 121-150 5-34 (68)
253 PF07332 DUF1469: Protein of u 41.3 22 0.00047 25.0 2.1 50 117-168 71-120 (121)
254 PF02487 CLN3: CLN3 protein; 39.6 2.1E+02 0.0046 24.9 8.2 26 117-142 172-198 (402)
255 PF11044 TMEMspv1-c74-12: Plec 39.5 8.5 0.00019 22.8 -0.2 17 147-163 31-47 (49)
256 PF03825 Nuc_H_symport: Nucleo 38.4 1.6E+02 0.0035 25.2 7.4 11 120-130 160-170 (400)
257 COG3202 ATP/ADP translocase [E 37.2 1.8E+02 0.0038 26.3 7.4 42 68-109 168-210 (509)
258 PTZ00207 hypothetical protein; 36.3 57 0.0012 29.9 4.4 67 74-140 478-552 (591)
259 KOG0569|consensus 35.9 2.3E+02 0.005 25.4 8.0 23 17-39 326-348 (485)
260 COG5336 Uncharacterized protei 32.2 1.5E+02 0.0032 21.2 4.9 40 80-121 39-78 (116)
261 PF01306 LacY_symp: LacY proto 31.7 60 0.0013 28.4 3.6 46 82-134 137-182 (412)
262 PF11189 DUF2973: Protein of u 31.6 82 0.0018 20.1 3.4 20 151-170 42-61 (65)
263 KOG2563|consensus 31.0 40 0.00087 30.0 2.4 35 76-110 388-422 (480)
264 PRK06638 NADH:ubiquinone oxido 30.7 43 0.00094 26.1 2.4 28 117-144 142-169 (198)
265 PRK14780 lipoprotein signal pe 29.5 53 0.0011 27.0 2.7 7 163-169 248-254 (263)
266 KOG4255|consensus 28.8 73 0.0016 27.6 3.5 49 122-171 193-251 (439)
267 PF13120 DUF3974: Domain of un 27.7 89 0.0019 21.8 3.2 43 118-160 4-49 (126)
268 PRK10297 PTS system N,N'-diace 27.5 27 0.00059 30.8 0.8 30 116-146 404-434 (452)
269 PF12606 RELT: Tumour necrosis 26.5 76 0.0016 19.3 2.4 17 122-138 4-20 (50)
270 COG2056 Predicted permease [Ge 26.4 78 0.0017 27.5 3.3 33 120-152 192-224 (444)
271 PF15050 SCIMP: SCIMP protein 26.2 61 0.0013 23.5 2.2 31 130-160 22-56 (133)
272 PRK11339 abgT putative aminobe 24.3 5.4E+02 0.012 23.3 10.2 15 13-27 93-107 (508)
273 KOG1288|consensus 24.2 3.3E+02 0.0071 26.1 7.0 93 6-102 69-174 (945)
274 PF05255 UPF0220: Uncharacteri 23.9 2.7E+02 0.006 21.1 5.6 61 84-147 104-165 (166)
275 COG2270 Permeases of the major 23.9 2.7E+02 0.0059 24.7 6.2 93 47-140 114-220 (438)
276 PRK03612 spermidine synthase; 22.5 2E+02 0.0043 25.8 5.3 27 82-108 144-170 (521)
277 PF01102 Glycophorin_A: Glycop 22.3 65 0.0014 23.3 1.8 26 122-147 71-97 (122)
278 PRK12586 putative monovalent c 21.8 2.7E+02 0.0058 20.8 5.0 26 142-167 98-125 (145)
279 TIGR01478 STEVOR variant surfa 21.1 3.9E+02 0.0085 22.3 6.3 32 117-148 260-291 (295)
280 COG4298 Uncharacterized protei 20.4 57 0.0012 22.2 1.1 27 116-142 41-67 (95)
281 PF03547 Mem_trans: Membrane t 20.0 97 0.0021 26.0 2.7 55 85-144 97-151 (385)
No 1
>KOG2532|consensus
Probab=99.85 E-value=2.5e-21 Score=168.62 Aligned_cols=134 Identities=25% Similarity=0.550 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhhHHHHhhh--hccCCc-chHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhh
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDI--APNFSE-DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFG 95 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l--~~~~~~-~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~ 95 (171)
++.+..||.++++++.++++.+ +++..+ +...++++++++.++.|++.+|+..+++|.+|||+|+++|+.|+.++++
T Consensus 326 ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~ 405 (466)
T KOG2532|consen 326 LSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALA 405 (466)
T ss_pred CchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHH
Confidence 6788899999999999999765 455544 4468999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCCCCCCCcc
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDD 155 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~~~~~~ 155 (171)
++++|.++|.+++++ +.++|+.+|.+.++++++++++|.+++++|+|+|++++++++
T Consensus 406 ~~~~P~~vg~~~~~~---t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~~~~~~~~ 462 (466)
T KOG2532|consen 406 GFIAPLLVGIIVTDN---TREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWTKSEEKEE 462 (466)
T ss_pred HHHHHHheeeEeCCC---CHHHHHHHHHHHHHHHHHhchheeEeecCcccCccCCccccc
Confidence 999999999999743 567999999999999999999999999999999999655433
No 2
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.38 E-value=4.8e-12 Score=109.02 Aligned_cols=106 Identities=28% Similarity=0.512 Sum_probs=88.9
Q ss_pred cchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHH
Q psy15816 46 EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVL 125 (171)
Q Consensus 46 ~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~ 125 (171)
.+....+.+++++.++.+....+.+....|.+|+++|.+.|+.|+.++++++++|.++|++++.+ +.++|+.+|.+.
T Consensus 359 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~---~~~~~~~~f~~~ 435 (465)
T TIGR00894 359 AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQD---SKNVWLIVFLIM 435 (465)
T ss_pred CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC---CchHHHHHHHHH
Confidence 34455566666666666666677788888999999999999999999999999999999998864 235799999999
Q ss_pred HHHHHHHHHhhhheecccccCCCCCCCCc
Q psy15816 126 TTTYTVGAIVFLIFGTGQLQPWNTPKISD 154 (171)
Q Consensus 126 a~i~~~g~i~~~~~~~~e~q~w~~~~~~~ 154 (171)
+++.+++.+++.++.+.|+|+|++++++|
T Consensus 436 ~~~~~i~~i~~~~~~~~~~~~w~~~~~~~ 464 (465)
T TIGR00894 436 AFVNILCVIFYLIFGSAERQDWAKEEKDT 464 (465)
T ss_pred HHHHHHHHHHeeeeecceecCCCCCcccC
Confidence 99999999999999999999999765544
No 3
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.39 E-value=1.4e-07 Score=81.07 Aligned_cols=123 Identities=13% Similarity=0.100 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhHHHHhhhh--ccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhc-cccchHHHHHHHHHHHHhhhhhh
Q psy15816 22 ALTFNGAVTAGYLGNGLDIA--PNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLD-IAPNFSGTIFGLANTLSSFGGFV 98 (171)
Q Consensus 22 ~~ark~~~~~G~~~~~l~l~--~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~d-iap~~ag~v~gi~n~~g~l~gii 98 (171)
+.--|.++..|++.+++.-+ .+. .+...-.++..+.-.+.++..+....+... .+++..|...++-|+.+|++|.+
T Consensus 90 r~npr~fm~~gLilsai~nil~Gfs-~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal 168 (448)
T COG2271 90 RSNPRYFMAFGLILSAIVNILFGFS-PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL 168 (448)
T ss_pred cCCCceeehHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch
Confidence 33346777888888886543 332 333333444444444545444443333333 33456899999999999999999
Q ss_pred hhhhh--heeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCCCCC
Q psy15816 99 SSHIV--GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK 151 (171)
Q Consensus 99 ~p~i~--G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~~ 151 (171)
.|.++ +++..+ ++||..|++.+++.++-+++.+...+++||+-.-|+
T Consensus 169 ~~~~~~la~~~~~------~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ 217 (448)
T COG2271 169 APLVALLAFFAFH------GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP 217 (448)
T ss_pred HHHHHHHHHHHhc------cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC
Confidence 99999 888776 479999999999999999988888899999887653
No 4
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.16 E-value=2e-05 Score=68.72 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=56.4
Q ss_pred hhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816 63 GAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 63 ~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
+...+..++...++.|++.|.+.|+.+..++++++++|.+.+ .+. .++|+.+|.+.+++.+++.++.++....
T Consensus 363 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~-----~~~y~~~f~~~~~~~~i~~~~~~~~~~~ 435 (476)
T PLN00028 363 QAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGS-----SYSTETGISLMGVMIIACTLPVAFIHFP 435 (476)
T ss_pred HHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH--hcC-----CccHhhHHHHHHHHHHHHHHHHHheecc
Confidence 334445566666777888899999999999999999998765 121 2579999999999999998888776533
No 5
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.14 E-value=2.3e-05 Score=63.75 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHhh-hhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccc-hHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLD-IAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN-FSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~-l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~-~ag~v~gi~n~~g~l~ 95 (171)
.+..+..||.....+.....+. +...+..+.+.......+.-...+...+...+...|..|+ +.+..+++.+...+++
T Consensus 54 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g 133 (352)
T PF07690_consen 54 YLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLG 133 (352)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhh
Confidence 4555666777777777666654 3222223333222222222222233344455556677774 7799999999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
.+++|.+.+++.+. .+|+.+|++.+++.++..+++..
T Consensus 134 ~~~g~~l~~~l~~~------~~~~~~~~~~~~~~~~~~il~~~ 170 (352)
T PF07690_consen 134 SILGPLLGGFLISY------FGWRWAFLISAILSLIAAILFIL 170 (352)
T ss_dssp HHHHHHHHHHCCCH------CHHCCHHHHHHHHHHHHHHHHHC
T ss_pred hhcccchhhhhhhc------cccccccccccchhhhhhhhHhh
Confidence 99999999998854 46999999999998888775333
No 6
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.99 E-value=5.7e-05 Score=61.66 Aligned_cols=116 Identities=11% Similarity=0.074 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHhh--hhccC---C-cchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLD--IAPNF---S-EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANT 90 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~--l~~~~---~-~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~ 90 (171)
.++.+..||.....+.....+. +.+.. . .+.........+.-...+...+...+...|..| ++.+...|+.+.
T Consensus 56 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
T TIGR00900 56 ALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQA 135 (365)
T ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHH
Confidence 4566777787776665543322 22221 1 133222222222222233333444556667777 567999999999
Q ss_pred HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
...++.+++|.+.+++.+. .+|+..|.+.+...++..+....+
T Consensus 136 ~~~~g~~~g~~l~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 136 VRSLFYIVGPGIGGLMYAT------LGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988775 469999998777666655544333
No 7
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.99 E-value=3.1e-05 Score=66.45 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
.+..+..||.....+.+...+..... ...+.........+.-...+...+...+...+..| ++.|...|+.+...+++
T Consensus 80 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 159 (434)
T PRK11663 80 IVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVG 159 (434)
T ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44556667777766666655433221 12233222222111112223333344445556666 56799999999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL 137 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~ 137 (171)
+.++|.+.|++.+. .+||.+|.+.+++.++..+...
T Consensus 160 ~~~~~~~~~~l~~~------~gw~~~f~~~~i~~~~~~~~~~ 195 (434)
T PRK11663 160 GALIPLVVGAIALH------YGWRYGMMIAGIIAIVVGLFLC 195 (434)
T ss_pred HHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988765 4699999988877665544433
No 8
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.98 E-value=9e-06 Score=66.63 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.+..+..||.....+.....+.. .++. .+.........+.-...+...+...+...|..| +..+...++.+...++
T Consensus 52 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 130 (379)
T TIGR00881 52 SVSDRSNPRVFLPIGLILCAIVNLFFGFS-TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNV 130 (379)
T ss_pred HHHHhhCCeehhHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchh
Confidence 45566677777777666554432 2221 233322222222222333334444555567666 4678999999999999
Q ss_pred hhhhhhh-hhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheeccccc
Q psy15816 95 GGFVSSH-IVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQ 145 (171)
Q Consensus 95 ~gii~p~-i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q 145 (171)
+++++|. +.+.+.+. .+|+..|.+.+.+.++..+...++.+.+++
T Consensus 131 g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 131 GGGLLPPLVLFGIAEL------YSWHWVFIVPGIIAIIVSLICFLLLRDSPQ 176 (379)
T ss_pred HHHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHHHHheeeCCCcc
Confidence 9999994 45544333 479999998887777666655555544433
No 9
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.97 E-value=3.7e-05 Score=62.95 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.+..+..||.....+.....+.. .++. .+.........+.-...+...+.......|..| ++.+..+++.+...++
T Consensus 51 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 129 (399)
T TIGR00893 51 WLLDRFGARKTLAVFIVIWGVFTGLQAFA-GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGL 129 (399)
T ss_pred HHHHhcCcceeeHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchH
Confidence 34455666666655555443322 2221 233222222111111222223333445557777 5679999999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
+++++|.+.+.+.+. .+|+..|.+.+++.++..+...++.
T Consensus 130 g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 130 GGIIGGPLVGWILIH------FSWQWAFIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred HHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHHHHhhhee
Confidence 999999999987765 3699999998887776666555443
No 10
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.91 E-value=7.3e-05 Score=64.75 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=53.9
Q ss_pred hhhhcccc-chHHHHHHHHHHHHhh-hhhhhhhhhheeecCCCc------cccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 71 GNGLDIAP-NFSGTIFGLANTLSSF-GGFVSSHIVGVLTDGDKV------RHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 71 ~~~~diap-~~ag~v~gi~n~~g~l-~gii~p~i~G~iv~~~~~------~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
....|..| +.+|++.|+.|+.+++ +++++|.+.|++.+.+.+ +...+|+.+|.+.+++.+++.+.++.+.
T Consensus 372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778 5689999999999997 669999999999982100 0024599999999888888888777664
No 11
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.85 E-value=0.0002 Score=50.12 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhh
Q psy15816 20 TLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGF 97 (171)
Q Consensus 20 ~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gi 97 (171)
..+..||.....+.....+.... ....+.........+.....+...+..+....|..| ++.+...++.+....++..
T Consensus 22 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 101 (141)
T TIGR00880 22 TDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPL 101 (141)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHH
Confidence 34556666665555444433211 112333322222222222223333444555567766 5679999999999999999
Q ss_pred hhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 98 VSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 98 i~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
++|.+.+.+.+. .+|+..|.+.+.+.+++.+....+
T Consensus 102 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 102 LGPPLGGVLAQF------LGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HhHHhHHHHhcc------cchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999988764 469999998887777766655444
No 12
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.79 E-value=0.00019 Score=61.33 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.+..+..||.....+.+...+.. .++ ..+...-...-.+.-...+...+.......+..| ++.|...|+.+....+
T Consensus 65 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~ 143 (412)
T TIGR02332 65 IMLAIIGARRWIAGIMVLWGIASTATMF-ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPV 143 (412)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 35567777777766666555432 222 2333221111111111112122233333456666 5689999999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
+.+++|.+.+++.+.+...+..+||.+|.+.++..++..++..++.
T Consensus 144 g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~ 189 (412)
T TIGR02332 144 TMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWL 189 (412)
T ss_pred HHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999887531000124799999998777665555444443
No 13
>PRK03699 putative transporter; Provisional
Probab=97.75 E-value=0.00047 Score=58.22 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.+..+..||.....+.....+.. ..+ ..+.........+.-...+...+.......+..| +..+...+..+....+
T Consensus 64 ~l~dr~g~r~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 142 (394)
T PRK03699 64 WLMEIIPLKRQLIFGFALMILAVAGLMF-SHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSM 142 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHH
Confidence 45567777777766665544322 222 2333322222222222222222233344445556 4578889999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL 137 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~ 137 (171)
++.+.|.+.+++..+. .+||.+|.+.+.+.++..+.+.
T Consensus 143 g~~~~~~~~~~l~~~~-----~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 143 AGMIFPIIAAYLLARS-----IEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred HHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877643 5799999988877666555443
No 14
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.75 E-value=0.00035 Score=61.31 Aligned_cols=73 Identities=21% Similarity=0.416 Sum_probs=59.3
Q ss_pred hhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 62 NGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 62 ~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
.++..+..++..+++.| ++.++.+|+.|...++++++.+.+.|++.+. .+|+..|.+.+++.+.+.+......
T Consensus 330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~------~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA------HGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666777778777 4689999999999999999999999999886 3599999999988888877666553
No 15
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.73 E-value=0.00022 Score=66.00 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 17 AMFTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 17 ~~l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
..+.-+..||.....++++.++..+.+ +..+....+++.++..++.+...+..+....++.| +..|+.+|+.+..+.+
T Consensus 616 g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rl 695 (742)
T TIGR01299 616 ALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKA 695 (742)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 355668889998888888877654322 12233222222222222222223344555567778 5579999999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
+++++|.+.|.+.+. .....|++.++++++++++.+++
T Consensus 696 Gaiigp~i~g~L~~~-------~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 696 AAVLGILIFGSFVGI-------TKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999987654 24567888888888777766555
No 16
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.72 E-value=0.00012 Score=63.43 Aligned_cols=62 Identities=13% Similarity=0.271 Sum_probs=50.6
Q ss_pred hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
..++...|..| ++.|...|+.+...+++++++|.+.|++.+.. ++|+..|++.+++.+++.+
T Consensus 353 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~-----g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT-----KNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc-----CCcchHHHHhhHHHHHHHH
Confidence 33455556666 56799999999999999999999999998864 5799999998888777665
No 17
>TIGR00895 2A0115 benzoate transport.
Probab=97.72 E-value=0.00013 Score=60.33 Aligned_cols=115 Identities=16% Similarity=0.078 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhh-ccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIA-PNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~-~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
.+..+..||.....+.....+... .....+.........+.-...+...+...+...|..| ++.+...++.+....++
T Consensus 74 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 153 (398)
T TIGR00895 74 PLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153 (398)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHH
Confidence 345566777777666655544321 1122232222221111112223333444555667777 56799999999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
+.++|.+.|++.+. .+|+..|.+.+.+.++..+....
T Consensus 154 ~~~~~~~~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 154 AAVGGFLAGWLIPV------FGWRSLFYVGGIAPLLLLLLLMR 190 (398)
T ss_pred HHHHHHHHHHHhhc------ccceeehhhhhhHHHHHHHHHHH
Confidence 99999999988775 36999999886555555444333
No 18
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.69 E-value=0.00077 Score=55.10 Aligned_cols=68 Identities=28% Similarity=0.425 Sum_probs=55.5
Q ss_pred chhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 66 TAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 66 ~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
.+..++...|..| +..|...|+.+...++++.++|.+.|++.+.. ++|+..|.+.+++.+++.+.+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~-----g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 329 GAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT-----GSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-----CchhHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777 56899999999999999999999999998864 55999999988888887776554
No 19
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.69 E-value=0.00018 Score=62.02 Aligned_cols=117 Identities=15% Similarity=0.231 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchh----hhhhhhcccc-chHHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAG----YLGNGLDIAP-NFSGTIFGLANT 90 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g----~~~~~~diap-~~ag~v~gi~n~ 90 (171)
.+..+..||.....+.+...+.. .+....+... .+.+.-.+.|+..+. ......+..| ++.+...|+.+.
T Consensus 98 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 174 (465)
T TIGR00894 98 YLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIA---LVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS 174 (465)
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCch---HHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35556667777766665554332 1211011111 111222233333233 2334446666 678999999999
Q ss_pred HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816 91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
..+++.+++|.+.+++.+.. .+|+.+|++.+++.++..+++..+.++
T Consensus 175 ~~~~g~~i~~~l~~~l~~~~-----~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 175 GFQLGTFIFLPISGWLCESW-----GGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHHHHHHHHHHHHHHHHhcc-----CCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999887642 379999999888777666655555433
No 20
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.68 E-value=0.00025 Score=59.39 Aligned_cols=63 Identities=22% Similarity=0.197 Sum_probs=48.8
Q ss_pred hhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 72 NGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 72 ~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
...|..| +..+...|+.+....++.+++|.+.|.+.+. .+|+..|.+.+.+.+++.+...++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (408)
T PRK09874 130 LIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS------YGLRPVFFITASVLFLCFLVTLFCI 193 (408)
T ss_pred HHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555 5579999999999999999999999988765 3699999998887777666544443
No 21
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.67 E-value=0.00013 Score=62.69 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=49.5
Q ss_pred hhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816 71 GNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 71 ~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
....|..| +..|..+|+.++..++++.+.|.+.+...+.. .+||.+|++.+.+.++..+...++.++
T Consensus 141 ~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 141 RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-----NDWHAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34446565 56899999999999999999998877655432 479999999888877765554444433
No 22
>PRK09952 shikimate transporter; Provisional
Probab=97.63 E-value=0.00064 Score=58.53 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=54.6
Q ss_pred hhcchhhhhhhhcccc-chHHHHHHHHHHHHh-hhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 63 GAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS-FGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 63 ~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~-l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
+...+..++...|+.| ++.++..|+.+..+. +++.++|.+.|++++.+. ++|+..|.+.+++.+++.+..+..
T Consensus 358 ~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~----~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 358 DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG----GSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHHHHHc
Confidence 3334455667778777 566778888666654 899999999999988542 579999998888888888776655
No 23
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.63 E-value=0.00071 Score=56.81 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
.+..+..||.....+.....+.... ....+.........+.-...+......++...|..| ++.+...++.+...+++
T Consensus 60 ~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~ 139 (392)
T PRK10473 60 KIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCII 139 (392)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 3455667777766665554433221 112232221111111111112222223444456555 66799999999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL 137 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~ 137 (171)
++++|.+.+.+.+. .+|+..|.+.+.+.++..+...
T Consensus 140 ~~~~~~i~~~l~~~------~g~~~~~~~~~~~~~i~~~~~~ 175 (392)
T PRK10473 140 PVLAPVLGHLIMLK------FPWQSLFYTMAAMGILVLLLSL 175 (392)
T ss_pred HHHHHHHHHHHHhC------cChHHHHHHHHHHHHHHHHHHH
Confidence 99999998877654 4699999998877766665433
No 24
>PRK10054 putative transporter; Provisional
Probab=97.63 E-value=0.00022 Score=60.56 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.++.+..||.....+.....+.. .++. .+.+..+....+.....+...+...+...|..| +..+..+|+.+...++
T Consensus 65 ~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 143 (395)
T PRK10054 65 ILADKFDKKRYMLLAITAFASGFIAIPLV-NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNI 143 (395)
T ss_pred HHHhhcCcchhHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence 45556667776666665554332 2222 333222222211111111112223333456555 5679999999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV 135 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~ 135 (171)
++.++|.+.+++.+ .+|+.+|.+.+++.+++.+.
T Consensus 144 g~~igp~l~~~l~~-------~g~~~~f~~~~~~~~i~~i~ 177 (395)
T PRK10054 144 GWTVGPPLGTLLVM-------QSINLPFWLAAICSAFPLVF 177 (395)
T ss_pred HHHHHHHHHHHHHH-------hccCcHHHHHHHHHHHHHHH
Confidence 99999999998764 25999999888777766543
No 25
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.62 E-value=0.00034 Score=58.05 Aligned_cols=111 Identities=8% Similarity=0.006 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.+..+..||.....+.....+.. ..+ ..+...-.....+.-...+...+...+...|..| ++.+...++.+....+
T Consensus 69 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 147 (405)
T TIGR00891 69 LWGDRYGRRLPMVTSIVLFSAGTLACGF-APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAV 147 (405)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHH
Confidence 45556677777766655554332 222 1232221111111111122222333444556666 6689999999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHH
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGA 133 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~ 133 (171)
+.+++|.+.+.+.+... .+|+..|.+.+...++..
T Consensus 148 g~~~~~~l~~~l~~~~~----~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 148 GAVVAAQVYSLVVPVWG----DGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHHHHHHhcC----ccHHHHHHHHHHHHHHHH
Confidence 99999999888876531 369999988665555443
No 26
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.61 E-value=0.00042 Score=57.34 Aligned_cols=115 Identities=11% Similarity=0.047 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG 96 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g 96 (171)
+..+..||.....+.....+.... ....+.........+.....+...+...+...|..| +..+.+.|+.+....+++
T Consensus 63 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 142 (385)
T TIGR00710 63 LSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAP 142 (385)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 455666777666665554432211 111233222222212111222222333444557666 567999999999999999
Q ss_pred hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.++|.+.+++.+. .+|+..|.+.+++.++..+....+
T Consensus 143 ~~g~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 143 AVAPLLGGYILVW------LSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHH------cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988765 469999998887777666554443
No 27
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.61 E-value=0.00035 Score=59.17 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=51.5
Q ss_pred hhhccc-c-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 72 NGLDIA-P-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 72 ~~~dia-p-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
...|.. | +++|.++|+.+..+++++.++|.+.|++.++. ++|+..|.+.+...+++.++.+.+.
T Consensus 316 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 316 LALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS-----GNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHhc
Confidence 334444 3 46899999999999999999999999999875 6799999998888877776655553
No 28
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.58 E-value=0.00061 Score=56.56 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG 96 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g 96 (171)
+..+..||.....+.....+..... ...+.........+.-...+.......+...|..| +..+...++.+....+++
T Consensus 49 l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 128 (377)
T PRK11102 49 MADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP 128 (377)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3445667777766666555432211 11232222222111111122222233445556666 557999999999999999
Q ss_pred hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
+++|.+.+.+.+. .+|+..|.+.+.+.+++.+...++
T Consensus 129 ~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 129 LLAPIIGGWLLVW------FSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHH------cChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988765 369999998888777766554443
No 29
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.55 E-value=0.0008 Score=56.54 Aligned_cols=62 Identities=10% Similarity=0.200 Sum_probs=49.5
Q ss_pred hhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 73 GLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 73 ~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
..|..| +..|.+.|+.+...++++.++|.+.|++.+. .+|+..|.+.+++.+++.+...++.
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 327 AVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW------FGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335555 6689999999999999999999999988775 3699999998888887776655443
No 30
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.52 E-value=0.00093 Score=58.34 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=47.9
Q ss_pred hhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCCC
Q psy15816 71 GNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNT 149 (171)
Q Consensus 71 ~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~ 149 (171)
....++.| +..|+..|+.+..+.+.|.+.|.+.|++.+.. ++|+..+.+..+..+++.+..+++ +|...|..
T Consensus 365 ~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~--pes~~~~~ 437 (490)
T PRK10642 365 STLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST-----QNLMMPAYYLMVVAVIGLITGVTM--KETANRPL 437 (490)
T ss_pred HHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHh--ccccCCCC
Confidence 33345667 56788889877778888999999999988753 467766666555555555544443 44445643
No 31
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.51 E-value=0.0015 Score=54.91 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=50.2
Q ss_pred hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.++...+..| +..|...|+.+..+.+++.++|.+.|++.++. ++|...|.+.+...+++.+..+..
T Consensus 329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG-----RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-----CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666 56899999999999999999999999998864 578888877766666655544433
No 32
>KOG2504|consensus
Probab=97.51 E-value=0.00027 Score=62.81 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=58.9
Q ss_pred hhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCCCC
Q psy15816 72 NGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTP 150 (171)
Q Consensus 72 ~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~ 150 (171)
...|+-+ +.....+|+...+..++.+++|.+.|++.+.+ ++|...|+..+...+++++++++... ..+.|.++
T Consensus 412 i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t-----g~Y~~~f~~~g~~~~~s~~~~~~~~~-~~~~~~~~ 485 (509)
T KOG2504|consen 412 ILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT-----GNYDHAFYFCGLCFLLSAVLLLILRE-CLKRREKS 485 (509)
T ss_pred HHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-----CCeeeehhhcChHHHHHHHHHHHhHH-HHHhcccc
Confidence 3345544 55688999999999999999999999888875 67999999999999999988887652 33444444
Q ss_pred CCC
Q psy15816 151 KIS 153 (171)
Q Consensus 151 ~~~ 153 (171)
+++
T Consensus 486 ~~~ 488 (509)
T KOG2504|consen 486 AKT 488 (509)
T ss_pred ccc
Confidence 333
No 33
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.51 E-value=0.00021 Score=59.85 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=52.4
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
+...+...+..| ++.|.++++.+....++..++|.+.|.+.+. .+|+..|.+.+++.+++.+.....
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~------~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 330 PAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN------YGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555 5679999999999999999999999998775 369999999998888877765443
No 34
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.50 E-value=0.0013 Score=55.67 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=48.0
Q ss_pred cccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 75 DIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 75 diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
+..| ++.+...++.+....+++.++|.+.+++.++ .+||.+|.+.+++.++..+.+.++.+
T Consensus 105 ~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 105 SQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4334 6789999999999999999999998888764 47999999988877666655444443
No 35
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.49 E-value=0.00057 Score=55.88 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGG 96 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~g 96 (171)
.++.+..||.....+.....+..... ...+...-.....+.-...+...........+..|++.+...++.+....++.
T Consensus 60 ~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 139 (377)
T TIGR00890 60 LLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGS 139 (377)
T ss_pred HHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhH
Confidence 35567777777766665554432211 11222211111111111111111112222334446667999999999999998
Q ss_pred hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
++.+.+.+.+.+. .+||..|.+.+++.++..+....+
T Consensus 140 ~~~~~~~~~~~~~------~~~~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 140 FILSPLITSVINL------EGVPAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred hHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 8766665655443 479999999888776665544443
No 36
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.48 E-value=0.00086 Score=58.70 Aligned_cols=116 Identities=14% Similarity=0.053 Sum_probs=68.8
Q ss_pred HHHHH-HHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccc----hHHHHHHHHHH
Q psy15816 18 MFTLA-LTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN----FSGTIFGLANT 90 (171)
Q Consensus 18 ~l~l~-~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~----~ag~v~gi~n~ 90 (171)
.++.+ ..||.....|.....+.. .+.. .+.....+...+.....++..+...+...|..|+ ..+..+++.+.
T Consensus 70 ~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~ 148 (475)
T TIGR00924 70 WFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYM 148 (475)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHhc-ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHH
Confidence 34455 577777777766655432 2222 2222111111111111222223333343454442 25778999999
Q ss_pred HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
..|++++++|.+.|++.++ .+|+.+|.+.++..+++.+.+....
T Consensus 149 ~~niG~~ig~~l~g~l~~~------~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 149 SINIGSFISPLLAGVIAEN------YGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHHHHHHHHHh------cChHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999998765 3699999998877777766665543
No 37
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.48 E-value=0.00056 Score=56.46 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=52.4
Q ss_pred hhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 70 LGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 70 ~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.....|..|+..+...++.+...++++.++|.+.|.+.+. .+|+.+|.+.+++.+++.+...+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 310 MLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAER------WSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccchhHHHHHHHHHHHHHHHHhee
Confidence 4445677787778999999999999999999999998775 369999999888888887765543
No 38
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.45 E-value=0.00077 Score=56.97 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=52.3
Q ss_pred hhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 70 LGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 70 ~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.....|..|+..|...++.+...++++.++|.+.|++.+. .+|+.+|.+.+++.+++.+.+...
T Consensus 327 ~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~------~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 327 MLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEI------WNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677887789999999999999999999999998875 369999998888877777665544
No 39
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.45 E-value=0.0015 Score=54.99 Aligned_cols=112 Identities=14% Similarity=0.045 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHhh--hhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLD--IAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~--l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.++.+..||.....+.....+. +.++. .+.........+.-...+...+...+...|..| ++.+..+++.+....+
T Consensus 72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 150 (406)
T PRK11551 72 RLADRIGRKRILIVSVALFGLFSLATAQA-WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPF 150 (406)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 3455566777666665444432 22222 333322222222111222222333445556665 6689999999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF 136 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~ 136 (171)
+++++|.+.+.+.+. .+|+..|.+.+.+.++..+..
T Consensus 151 g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 151 GGALASVIGVLAAGD------AAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred HHHHHHHHHHHHccc------cCHHHHHHHHHHHHHHHHHHH
Confidence 999999987766554 469999998776655554433
No 40
>KOG2532|consensus
Probab=97.39 E-value=0.00094 Score=58.75 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=57.3
Q ss_pred cccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccC
Q psy15816 75 DIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQP 146 (171)
Q Consensus 75 diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~ 146 (171)
.-+| +..+...++......++.++.-.++|++.+.. .+|+.+|++.+++.++-.++|.++.++++++
T Consensus 155 ~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 155 KWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 3445 56788889988888999999998999998873 6899999999999998888899988887777
No 41
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.37 E-value=0.0023 Score=54.95 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=52.1
Q ss_pred hhhhcccc-chHHHHHHHHH-HHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 71 GNGLDIAP-NFSGTIFGLAN-TLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 71 ~~~~diap-~~ag~v~gi~n-~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
....|..| +..|...|+.+ ....++++++|.+.|++.+........+|+.+|.+.+++.+++.+.+.++.+
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33456667 56799999998 5678999999999999988642001136999999888887777766666543
No 42
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.36 E-value=0.0012 Score=55.57 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=53.0
Q ss_pred hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
.+....|..| +..|...|+.+...++++++.|.+.|++.++ .+|+..|.+.+++.+++.+...++.
T Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~------~~~~~~f~~~~~~~~~~~i~~~~~~ 470 (481)
T TIGR00879 404 PWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES------IGVGGVFIFFGGLNVLGLIFVYFFL 470 (481)
T ss_pred ehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCccceehhHHHHHHHHHHHHheec
Confidence 3444467777 4679999999999999999999999988776 3588899988888888777665543
No 43
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.35 E-value=0.0012 Score=56.66 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=52.1
Q ss_pred hhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 72 NGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 72 ~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
...|..| +.+|.+.|+.|+.++++++++|.+.|++.+.. +|+.+|.+.+++.+++++..+...
T Consensus 361 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~------g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 361 AAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW------HWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356665 57899999999999999999999999998863 599999999999888877655444
No 44
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.34 E-value=0.0022 Score=54.88 Aligned_cols=111 Identities=8% Similarity=0.025 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhh-ccCCcchHHHHHH-HHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIA-PNFSEDPIFAVAM-FTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~-~~~~~~~~~av~l-l~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.++.+..||.....+.+...+... .....+...-+.. +..+.+. +......+....|..| +..+...++.+...++
T Consensus 73 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (413)
T PRK15403 73 PLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSI-CFIATVGYVTVQEAFGQTKGIKLMAIITSIVLV 151 (413)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 566777888877777665554321 1122333221111 1111111 1111222344456655 4568889999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV 135 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~ 135 (171)
+..++|.+.+++.++ .+||..|++.+++.+++.+.
T Consensus 152 ~~~~g~~lg~~l~~~------~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 152 APIIGPLSGAALMHF------VHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHH
Confidence 999999998887764 47999999988877766554
No 45
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.34 E-value=0.0015 Score=55.47 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=48.2
Q ss_pred hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHH-HHHHhhhhee
Q psy15816 69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYT-VGAIVFLIFG 140 (171)
Q Consensus 69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~-~g~i~~~~~~ 140 (171)
.++..++..| ++.|.++|+.+...++++.++|.+.|++.+.. +++..|...+++.+ ++.+++....
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 333 QYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM------TPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh------chhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3455667777 56899999999999999999999999998763 46667766555544 4454444443
No 46
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.33 E-value=0.0014 Score=58.08 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=67.7
Q ss_pred HHHHHH-HHHHHHHHhhHHHHhh--hhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccc---hHHHHHHHHHHH
Q psy15816 18 MFTLAL-TFNGAVTAGYLGNGLD--IAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN---FSGTIFGLANTL 91 (171)
Q Consensus 18 ~l~l~~-ark~~~~~G~~~~~l~--l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~---~ag~v~gi~n~~ 91 (171)
.++.+. .||.....|.....+. ++.....+.......+.+.....++..+...+...|+-|+ .....+++....
T Consensus 67 ~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~ 146 (493)
T PRK15462 67 FLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAA 146 (493)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHH
Confidence 345555 7776666666554432 2222111111111111111122233223233334455442 457789999999
Q ss_pred HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
++++++++|.+.|++.+. .+|+.+|.+.++.++++.+.|.+.
T Consensus 147 ~nlG~~iap~l~g~L~~~------~Gw~~~F~iaaigm~l~li~~~~~ 188 (493)
T PRK15462 147 GNVGSIIAPIACGYAQEE------YSWAMGFGLAAVGMIAGLVIFLCG 188 (493)
T ss_pred HHHHHHHHHHHHHHHHhh------hChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999775 469999999877777777766543
No 47
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.33 E-value=0.0014 Score=56.17 Aligned_cols=115 Identities=9% Similarity=0.103 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
.+..+..||.....+.....+.. ......+...-+....+.-...+...+...+...|..| ++.+...++.+....++
T Consensus 59 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 138 (485)
T TIGR00711 59 WLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVA 138 (485)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 45566778877766665555432 11222333222222221111222222333445557766 66799999999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
..++|.+.|++.++ .+|+++|++.+.+.++..+...+
T Consensus 139 ~~~g~~~~~~l~~~------~~w~~~f~~~~~~~~~~~~~~~~ 175 (485)
T TIGR00711 139 PALGPTLGGWIIEN------YHWRWIFLINVPIGIIVVVVAFF 175 (485)
T ss_pred hhhhhccHhHhccC------cCceehhhhhhHHHHHHHHHHHH
Confidence 99999999998775 46999999877666555544333
No 48
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.31 E-value=0.0016 Score=55.42 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
.++.+..||.....+.....+..... ...+.+.......+.....+...+...+...|..| ++.+...|+.+...+++
T Consensus 68 ~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g 147 (400)
T PRK11646 68 AIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAG 147 (400)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 56667778888877776666543222 22333322221111111112222333444556665 57899999999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
..++|.+.|++. + .+|+..|++.+.+.++..+....+
T Consensus 148 ~~ig~~l~g~l~-~------~g~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 148 AVIGALLGSWLL-Q------YDFRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred HHHHHHHHHHHH-H------hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987 3 369999999887777665544333
No 49
>PRK03545 putative arabinose transporter; Provisional
Probab=97.31 E-value=0.00085 Score=56.43 Aligned_cols=113 Identities=8% Similarity=0.082 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHh-hhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTF-NGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~-~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.+..+..||.....+.....+.. ......+.+.-.+.. +..++ .+...+...+...|..| +..+...|+.+...++
T Consensus 66 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r-~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~ 144 (390)
T PRK03545 66 LLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISR-IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTAL 144 (390)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHH
Confidence 44556677777766665554432 222223332222211 11111 11111222344456666 5679999999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL 137 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~ 137 (171)
+..++|.+.+.+.+. .+||..|.+.+.+.++..+...
T Consensus 145 g~~ig~~l~~~l~~~------~gw~~~f~~~~~~~~l~~~~~~ 181 (390)
T PRK03545 145 AMVLGLPLGRVIGQY------LGWRTTFLAIGGGALITLLLLI 181 (390)
T ss_pred HHHHHhhHHHHHHHH------hcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988764 4799999998887766654433
No 50
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.31 E-value=0.0037 Score=50.34 Aligned_cols=112 Identities=23% Similarity=0.274 Sum_probs=72.6
Q ss_pred HHHHHHHH-HHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 20 TLALTFNG-AVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 20 ~l~~ark~-~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
..+..||. ....+.....+.. .... .+.........+.....+...+.......+..| ++.+..+|+.+...+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (352)
T cd06174 235 SDRLGRRRLLLLIGLLLAALGLLLLALA-PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLG 313 (352)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 34555565 5555555444332 2221 233322222222222333333444556667767 67899999999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
+.++|.+.|.+.+. .+|+..|.+.+++.+++.+.+.+
T Consensus 314 ~~i~~~i~g~l~~~------~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 314 GALGPLLAGLLLDT------GGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHHhcc------cCcchHHHHHHHHHHHHHHHhee
Confidence 99999999999875 46999999999988888776543
No 51
>TIGR00898 2A0119 cation transport protein.
Probab=97.30 E-value=0.0024 Score=55.42 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcc-hHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSED-PIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS 93 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~-~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~ 93 (171)
.+..+..||.....+....++.+ ..+...+ ....+.+..++.+..+......+....|+.| +..+...|+.+..+.
T Consensus 377 ~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 456 (505)
T TIGR00898 377 LLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMAR 456 (505)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHH
Confidence 44556777877777766655432 2222122 2333333333333333333444566668778 567999999999999
Q ss_pred hhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 94 FGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 94 l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
++++++|.+.+ +.+ ..+...|.+.+++.+++++..+++
T Consensus 457 ig~~i~p~i~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 457 VGSIISPFLVY-LGE-------KWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHHHHHhHHHH-HHH-------HHHhhHHHHHHHHHHHHHHHHHcC
Confidence 99999999988 322 235667777777777776655544
No 52
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.30 E-value=0.0026 Score=52.62 Aligned_cols=113 Identities=13% Similarity=-0.013 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGF 97 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gi 97 (171)
.++.+..||.....+.....+........+...-.+...+.-...+...........|..|++.+...++.+...+++..
T Consensus 57 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 136 (355)
T TIGR00896 57 WLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAA 136 (355)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence 45566777777666655443322211212322211111111111121112223334466677779999999999999999
Q ss_pred hhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 98 VSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 98 i~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
++|.+.+.+.+.. ...||..|...+.+.+++.+
T Consensus 137 i~~~~~~~l~~~~----~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 137 LAAAATVPLAQHS----GGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHH
Confidence 9999988887653 13499999877665554443
No 53
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.28 E-value=0.0029 Score=53.25 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=45.6
Q ss_pred hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhh---heeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816 69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIV---GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF 136 (171)
Q Consensus 69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~---G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~ 136 (171)
......|..| ++.+...++.+...+++.+++|.+. +...+. .+||.+|.+.+...++..+..
T Consensus 148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~------~~w~~~f~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT------LGWRIPLGLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC------ccHHHHHHHHHHHHHHHHHHH
Confidence 3445567766 6789999999999999999999987 544332 579999999665555554433
No 54
>PRK12382 putative transporter; Provisional
Probab=97.27 E-value=0.0011 Score=55.63 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=52.9
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
.....+..| ++.|...|+.+....+++.++|.+.|++.++ .+|+..|.+.+++.+++.+..+.+.
T Consensus 324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 324 GVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS------FGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCchHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555 6789999999999999999999999999886 3699999999988888877666543
No 55
>PRK03545 putative arabinose transporter; Provisional
Probab=97.25 E-value=0.0034 Score=52.75 Aligned_cols=67 Identities=9% Similarity=-0.027 Sum_probs=55.3
Q ss_pred hhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 69 YLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 69 ~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
......+..|+..|.+.|+.+....++..++|.+.|++.++ .+|+.+|...+.+.+++.+.+....+
T Consensus 315 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 315 MQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLH------LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445567787779999999999999999999999999886 46999999999999888887766553
No 56
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.25 E-value=0.0029 Score=53.58 Aligned_cols=117 Identities=11% Similarity=0.010 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGG 96 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~g 96 (171)
.+..+..||.....|.....+..+. .+.++...-++.-.+.-...+...+.......+..|+..+.++|+.+...++++
T Consensus 66 ~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 145 (393)
T PRK09705 66 WLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGG 145 (393)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHH
Confidence 4566778888888887777654322 122333322221111111122222222233345556667999999999888899
Q ss_pred hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.+++.+.+++.++. .+||..+.+.+...++..+.++..
T Consensus 146 ~~g~~~~~~l~~~~-----~~w~~~~~~~~~~~~~~~~~~~~~ 183 (393)
T PRK09705 146 GLGAAITPWLVQHS-----ETWYQTLAWWALPAVVALFAWWWQ 183 (393)
T ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877653 479998876555554444434333
No 57
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.24 E-value=0.0021 Score=55.54 Aligned_cols=56 Identities=9% Similarity=0.050 Sum_probs=42.6
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHH
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTV 131 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~ 131 (171)
.+...|..| +..|..+|+.+..+.+++.++|.+.|++.+.. +|+..|...++...+
T Consensus 388 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~------g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 388 PKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL------DLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC------ChHHHHHHHHHHHHH
Confidence 344456667 56899999999999999999999999998763 577777655544433
No 58
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.23 E-value=0.0013 Score=56.64 Aligned_cols=117 Identities=10% Similarity=-0.007 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhhHHHHhhh--hccC---CcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHH
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDI--APNF---SEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLS 92 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l--~~~~---~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g 92 (171)
++.+..||.....+.....+.. .++. ..+......+..+.-.+.+...+.......+..| ++.|...|+.+...
T Consensus 86 l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 165 (452)
T PRK11273 86 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 165 (452)
T ss_pred hhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 4555666766666655554322 1111 1122222222222112223332333333445445 66899999999999
Q ss_pred hhhh-hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 93 SFGG-FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 93 ~l~g-ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
++++ ++.|++...+... .+|+.+|++.+.+.++..+...++.+
T Consensus 166 ~~g~~~~~~l~~~~~~~~------~gw~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 166 NVGGGLPPLLFLLGMAWF------NDWHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred HhhhhHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9987 4555543222221 47999999988776665554444433
No 59
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.23 E-value=0.0019 Score=54.84 Aligned_cols=110 Identities=11% Similarity=-0.048 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG 96 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g 96 (171)
+..+..||.....+.....+.. ......+.+.-...-.+.-...+...+...+...|..| +..+...++.....+++.
T Consensus 78 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~ 157 (394)
T PRK10213 78 TIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL 157 (394)
T ss_pred HhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH
Confidence 3445667776666666555432 11111233222222112122222222333444457666 567999999999999999
Q ss_pred hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
+++|.+.+++.+. .+||.+|.+.+.+.++..+
T Consensus 158 ~ig~~l~~~l~~~------~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 158 VIAAPLGSFLGEL------IGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHhh------cCHHHHHHHHHHHHHHHHH
Confidence 9999999998775 3699999988766655443
No 60
>PRK10504 putative transporter; Provisional
Probab=97.23 E-value=0.0031 Score=54.33 Aligned_cols=65 Identities=17% Similarity=0.328 Sum_probs=50.1
Q ss_pred hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
..+...|..| ++.+...|+.+...+++..++|.+.|++.++ .+|+++|.+...+..++.+.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~------~gw~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 119 GRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY------ASWHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666 5678999999999999999999999999875 369999998777666665554443
No 61
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.23 E-value=0.0045 Score=54.20 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhh-hcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNG-LDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~-~diap-~~ag~v~gi~n~~g~l 94 (171)
.++.+..||.....+.....+.. ......+...-+..-.+.-...+...+...... .+..| ++.+..+|+......+
T Consensus 63 ~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~ 142 (495)
T PRK14995 63 ALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG 142 (495)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 55667788888877776665432 111223333222211111111111112222222 33434 6779999999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
+..++|.+.|++.++ .+||+.|++...+.++..+...++
T Consensus 143 g~~~gp~lgg~l~~~------~gwr~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 143 GAAFGPLVGGILLEH------FYWGSVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHHHHHHhhcc------CChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999876 479999999777666655544444
No 62
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.19 E-value=0.0012 Score=57.54 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHH-HHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVA-MFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS 93 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~-ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~ 93 (171)
.++-+..||.....+.....+.. .++. .+.....+ .+..+.+..... . ......+..| ++.|.+.|+.+..++
T Consensus 93 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~~~~~-~-~~~~i~~~~~~~~rg~a~g~~~~~~~ 169 (476)
T PLN00028 93 PVCDLYGPRYGSAFLLMLTAPAVFCMSLV-SSATGFIAVRFFIGFSLATFV-S-CQYWMSTMFNGKIVGTANGIAAGWGN 169 (476)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhhH-H-HHHHHHHhcChhheeHHHHHHHHHHH
Confidence 44566777777766665554432 2222 23322111 111122111111 1 1112235555 567999999988877
Q ss_pred hhhhhhhhhhheeec----CCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816 94 FGGFVSSHIVGVLTD----GDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 94 l~gii~p~i~G~iv~----~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
+++.+++.+.+.+.. ... .+..+||.+|++.+++.++..+...++.++
T Consensus 170 ~g~~~~~~~~~~i~~~~~~~~~-~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 170 LGGGVTQLLMPLVFPLIKDAGA-PSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 777776655443321 100 011379999999888877666655555433
No 63
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.18 E-value=0.0036 Score=52.85 Aligned_cols=112 Identities=10% Similarity=-0.032 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG 96 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g 96 (171)
++.+..||-....+.....+.... ....+.........+.-...+...+...+...|..| +..+...++.+....+++
T Consensus 71 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 150 (406)
T PRK15402 71 LSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAP 150 (406)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 455666777766665554433221 111232221111111111111111222344445555 455677888888888899
Q ss_pred hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816 97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF 136 (171)
Q Consensus 97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~ 136 (171)
.++|.+.+++.+. .+|+.+|++.+++.++..+..
T Consensus 151 ~~g~~i~~~l~~~------~~w~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK15402 151 LLGPLVGAALIHV------LPWRGMFVLFAALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHHHc------cCccHHHHHHHHHHHHHHHHH
Confidence 9999998888765 469999998887776665543
No 64
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.17 E-value=0.0021 Score=54.93 Aligned_cols=57 Identities=11% Similarity=0.220 Sum_probs=46.0
Q ss_pred hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHH
Q psy15816 69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYT 130 (171)
Q Consensus 69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~ 130 (171)
.+..+.+..| +.++.+.|+.|+.++++++++|.+.|.+.+.. ++|+.+|.+.+++.+
T Consensus 354 ~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~-----g~~~~~~~~~~~~~~ 411 (412)
T TIGR02332 354 FWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDAT-----GSFNSGLWFVAALLV 411 (412)
T ss_pred HHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccC-----CCCchhHHHHHHHHh
Confidence 3455455445 67899999999999999999999999998875 679999988766543
No 65
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.16 E-value=0.00088 Score=56.98 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=46.4
Q ss_pred hcccc-chHHHHHHH-HHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 74 LDIAP-NFSGTIFGL-ANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 74 ~diap-~~ag~v~gi-~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
.+..| +..++..++ .|+...++++++|.+.|++.+.. +|+.+|.+.+++.+++.++...+.+
T Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------GFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 34334 555666655 68889999999999999998863 5999999988888777766655443
No 66
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.16 E-value=0.0033 Score=55.02 Aligned_cols=119 Identities=11% Similarity=0.053 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hcc-CCc-chHHHHHHHHHHHHhhhh-cchhhhhhhhcccc-chHHHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APN-FSE-DPIFAVAMFTLALTFNGA-VTAGYLGNGLDIAP-NFSGTIFGLANTL 91 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~-~~~-~~~~av~ll~la~~~~~~-~~~g~~~~~~diap-~~ag~v~gi~n~~ 91 (171)
.+.-+..||.....+..+..+.+ ... ... +......+..+...+.+. ..+..|....++.| +..+...|+.+..
T Consensus 357 ~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~ 436 (502)
T TIGR00887 357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAAS 436 (502)
T ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHH
Confidence 36667788887766665544322 111 111 111111111121222111 12344566678888 5579999999999
Q ss_pred HhhhhhhhhhhhheeecCCCcc----ccCChhHHHHHHHHHHHHHHHhh
Q psy15816 92 SSFGGFVSSHIVGVLTDGDKVR----HFRPWQYVFMVLTTTYTVGAIVF 136 (171)
Q Consensus 92 g~l~gii~p~i~G~iv~~~~~~----~~~~w~~vF~i~a~i~~~g~i~~ 136 (171)
+.++++++|.+.|++.+.+..+ ....+..+|.+.+++.+++.+.+
T Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 437 GKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred hhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 9999999999999988753100 00234667888888888776654
No 67
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.14 E-value=0.0014 Score=55.41 Aligned_cols=103 Identities=7% Similarity=0.006 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.+..+..||.....+.....+.. .++. .+.....+.-.+.-...+...+.......|..| ++.+...|+.+....+
T Consensus 75 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 153 (426)
T PRK12307 75 LLADKFGRKPLMMWSIVAYSVGTGLSGLA-SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGI 153 (426)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhH
Confidence 44566778877777666655432 2221 222221111111111112122222334456666 5679999999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHH
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTT 127 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~ 127 (171)
+.+++|.+.+.+.+. .+||..|.+...
T Consensus 154 g~~~~~~l~~~l~~~------~~w~~~f~i~~~ 180 (426)
T PRK12307 154 GNIIAAYFMPSFAEA------YGWRAAFFVGLL 180 (426)
T ss_pred HHHHHHHHHHHHccc------CCHHHHHHHHHH
Confidence 999999988887664 479999987543
No 68
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.13 E-value=0.0048 Score=51.01 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=49.1
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCcc--ccCChhHHHHHHHHHHHHHHHh
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVR--HFRPWQYVFMVLTTTYTVGAIV 135 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~--~~~~w~~vF~i~a~i~~~g~i~ 135 (171)
....+...|..| +..+.+.|+.....+++.+++|.+.+.+.+....+ ....||..|.+.++..++..+.
T Consensus 102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~ 173 (356)
T TIGR00901 102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLV 173 (356)
T ss_pred HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence 344455567665 66799999999999999999999988887653100 0113999999988877765543
No 69
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.13 E-value=0.006 Score=53.36 Aligned_cols=128 Identities=8% Similarity=-0.068 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhh--hhccCCc-c----hHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLD--IAPNFSE-D----PIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLAN 89 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~--l~~~~~~-~----~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n 89 (171)
.++.+..||.....+.+...+. +...... . ....++...+.-...+...+.......+..| ++.|...++.+
T Consensus 78 ~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~ 157 (502)
T TIGR00887 78 WLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVF 157 (502)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence 4566778887766655444332 1111111 1 1111122212122223333444555667777 67899999999
Q ss_pred HHHhhhhhhhhhhhheeecCCC------c-----------cccCChhHHHHHHHHHHHHHHHhhhheecccccCC
Q psy15816 90 TLSSFGGFVSSHIVGVLTDGDK------V-----------RHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPW 147 (171)
Q Consensus 90 ~~g~l~gii~p~i~G~iv~~~~------~-----------~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w 147 (171)
....++.++++.+...+..... + ....+||..|.+.+...++..+...+ -+|...|
T Consensus 158 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~--lpESpr~ 230 (502)
T TIGR00887 158 AMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT--IPETPRY 230 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh--CCCCHHH
Confidence 9999999888887654432100 0 00136999997766555544333222 2555556
No 70
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.13 E-value=0.0035 Score=51.68 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 85 FGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 85 ~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
.++.+...+++..++|.+.+++.+. .+|+..|.+.+.+.++..+...++.
T Consensus 127 ~~~~~~~~~~g~~ig~~~~~~l~~~------~~~~~~f~~~~~~~~~~~~~~~~~~ 176 (375)
T TIGR00899 127 SSVMRAQISLAWVIGPPLAFWLALG------FGFTVMFLTAALAFVLCGVLVWLFL 176 (375)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHh------cccHHHHHHHHHHHHHHHHHHHHhC
Confidence 6888888899999999999988765 4699999998887776666554433
No 71
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.0014 Score=56.62 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=62.3
Q ss_pred HHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 59 LTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 59 ~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
..+.+...+..+.....+-|+.+|.+.|+...+|.++|+.-|...|...+.+ ++|+..|++...+.+++.+....
T Consensus 325 ~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t-----g~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 325 FVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT-----GSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 3355665555555555566888999999999999999999999999998875 68999999999888888876555
Q ss_pred eecc
Q psy15816 139 FGTG 142 (171)
Q Consensus 139 ~~~~ 142 (171)
...+
T Consensus 400 ~y~r 403 (417)
T COG2223 400 LYAR 403 (417)
T ss_pred HHHh
Confidence 4333
No 72
>TIGR00898 2A0119 cation transport protein.
Probab=97.12 E-value=0.0018 Score=56.18 Aligned_cols=112 Identities=9% Similarity=0.046 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
.++.+..||.....+.....+.. +.....+...-.++..+.-...+...........|..| ++.+.+.++.+....++
T Consensus 149 ~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g 228 (505)
T TIGR00898 149 YLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG 228 (505)
T ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHH
Confidence 45567788877777766655432 22222333222222222222222222333445567666 66789999999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
.++.|.+.+.+ .+||..|.+.++..++..+.+.+
T Consensus 229 ~~~~~~~~~~~---------~~wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 229 LVLLPLVAYFI---------PDWRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988876654 23999999988777766655533
No 73
>PRK11043 putative transporter; Provisional
Probab=97.12 E-value=0.0028 Score=53.30 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=47.7
Q ss_pred hhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 71 GNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 71 ~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
+...|..| +..+...+..+....+++.++|.+.|++.+. .+|+..|.+.+.+.++..+....+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH------FGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHHHHHc
Confidence 33445555 4567788888889999999999999988765 469999998887777766655444
No 74
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.11 E-value=0.0033 Score=54.36 Aligned_cols=104 Identities=8% Similarity=-0.043 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
.++.+..||.....+.....+.. ..+. .+...-.+...+.-...+...+.......|..| ++.+...++.+...++
T Consensus 77 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 155 (496)
T PRK03893 77 AMGDRYGRRLAMVISIVLFSVGTLACGFA-PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSI 155 (496)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 45556777777766655544322 2221 222211111111111112122223344456656 5679999999999999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHH
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTT 128 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i 128 (171)
+.+++|.+.+++.+. .+|+..|.+.+..
T Consensus 156 g~~~~~~~~~~l~~~------~~w~~~f~~~~~~ 183 (496)
T PRK03893 156 GAVVAAQVYSLVVPV------WGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHhcc------CCHHHHHHHHHHH
Confidence 999999999988765 4799999874433
No 75
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.10 E-value=0.0034 Score=54.13 Aligned_cols=76 Identities=29% Similarity=0.429 Sum_probs=56.9
Q ss_pred hhcccc-chHHHHHHHHHHHHhhhhhh-hhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCCCC
Q psy15816 73 GLDIAP-NFSGTIFGLANTLSSFGGFV-SSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTP 150 (171)
Q Consensus 73 ~~diap-~~ag~v~gi~n~~g~l~gii-~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~ 150 (171)
..|..| +..|..+|+.+..+++++.+ +|.+.|++.++. +|+.+|.+.+++.+++.+....+.+ .
T Consensus 372 ~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~------g~~~~f~~~~~~~~~~~~~~~~~~~--------~ 437 (452)
T PRK11273 372 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------GWDGGFMVMIGGSILAVILLIVVMI--------G 437 (452)
T ss_pred HHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHhc--------c
Confidence 346677 56899999999999998765 799999998873 4999999988888887776655543 3
Q ss_pred CCCccHHHhhhh
Q psy15816 151 KISDDVELAKKE 162 (171)
Q Consensus 151 ~~~~~~~~~~~~ 162 (171)
++|+++|+-||.
T Consensus 438 ~~~~~~~~~~~~ 449 (452)
T PRK11273 438 EKRHHEELLQKR 449 (452)
T ss_pred ccchHHHHHhhh
Confidence 444555655554
No 76
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.07 E-value=0.0038 Score=53.48 Aligned_cols=116 Identities=14% Similarity=-0.029 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhh-----ccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIA-----PNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTL 91 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~-----~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~ 91 (171)
.++.+..||.....+.....+... .....+......++.++.+..+...+..+....|+.| ++.++..|+.+..
T Consensus 301 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 301 ALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 355566666555444332221111 1111233333333333333333333345566678887 5789999999988
Q ss_pred Hhh-hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 92 SSF-GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 92 g~l-~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
+++ .+...|.+.+.+ +.. +.|...|.+.+++.+++.+..+++
T Consensus 381 g~~~~g~~~p~~~~~l-~~~-----g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 381 ANALFGGSAEYVALSL-KSI-----GMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHhHHHHHHHHH-HHh-----CCCcHHHHHHHHHHHHHHHHHHHh
Confidence 876 355588888854 432 567777887777777777665554
No 77
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.04 E-value=0.0038 Score=52.90 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHhhhhcchhhhhhhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHH
Q psy15816 47 DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVL 125 (171)
Q Consensus 47 ~~~~av~ll~la~~~~~~~~~g~~~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~ 125 (171)
+...++.+++++..+.....+..++.+.|..|+ .+|+..|+.|..+++++++.|.+.+.++. +.+.+|.+.
T Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--------~~~~~f~~~ 350 (368)
T TIGR00903 279 NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--------SAEAYFTFL 350 (368)
T ss_pred ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--------CHHHHHHHH
Confidence 344455566655555555555677888898885 68999999999999999999999887763 245577777
Q ss_pred HHHHHHHHHhhhh
Q psy15816 126 TTTYTVGAIVFLI 138 (171)
Q Consensus 126 a~i~~~g~i~~~~ 138 (171)
++..+++.+.-.+
T Consensus 351 ~~~~~i~~~~~~~ 363 (368)
T TIGR00903 351 AILITIAFAIALL 363 (368)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766443
No 78
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.03 E-value=0.0032 Score=58.40 Aligned_cols=128 Identities=10% Similarity=0.035 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
.++-+..||.....+.+...+.. +..+..+...-.++..+.....+...+...+...+..| ++.|...++.+.+..++
T Consensus 224 ~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG 303 (742)
T TIGR01299 224 GLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIG 303 (742)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 45666777877766655444322 11111222221111112112222223344555567777 67899999999999999
Q ss_pred hhhhhhhhheeecCCC-------ccccCChhHHHHHHHHHHHHHHHhhhheecccccCC
Q psy15816 96 GFVSSHIVGVLTDGDK-------VRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPW 147 (171)
Q Consensus 96 gii~p~i~G~iv~~~~-------~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w 147 (171)
+++++.+...++.... .....+||..|++.++..++..+.+.++ +|...|
T Consensus 304 ~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l--PESPrw 360 (742)
T TIGR01299 304 GIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM--PESPRF 360 (742)
T ss_pred HHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc--CCCHHH
Confidence 9999887554443210 0012469999988776665554443333 444444
No 79
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.03 E-value=0.0052 Score=50.58 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCc-chHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSE-DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS 93 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~-~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~ 93 (171)
.++.+..||.....+.....+.. .++. . +.. ......+..++.+...........|..| ++.+...++.+...+
T Consensus 59 ~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 136 (366)
T TIGR00886 59 FLVDKFGPRYTTTLSLLLLAIPCLWAGLA-VQSYS-VLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGN 136 (366)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHH-hhhHH-HHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhH
Confidence 45566677776666665555432 2221 2 222 1111111111111111222334446656 567888888887666
Q ss_pred hhhhhhhhhhheeec----CCCccccCChhHHH-HHHHHHHHHHHHhhhhe
Q psy15816 94 FGGFVSSHIVGVLTD----GDKVRHFRPWQYVF-MVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 94 l~gii~p~i~G~iv~----~~~~~~~~~w~~vF-~i~a~i~~~g~i~~~~~ 139 (171)
++..+++.+.+.+.+ +.+.....+|++.| ...+.+..+..++..++
T Consensus 137 ~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 187 (366)
T TIGR00886 137 MGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV 187 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 666666555444332 11000124799999 44455544444444433
No 80
>KOG2533|consensus
Probab=97.03 E-value=0.0019 Score=57.22 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh-hhheecccccCCCCCCC
Q psy15816 78 PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV-FLIFGTGQLQPWNTPKI 152 (171)
Q Consensus 78 p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~-~~~~~~~e~q~w~~~~~ 152 (171)
++..|..+|+-++...++++++.++...+.+.++.....+||+.|.+.+++.++.+++ |+++-+...+.|=..++
T Consensus 165 ~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ 240 (495)
T KOG2533|consen 165 KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDE 240 (495)
T ss_pred hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchH
Confidence 4456999999999999999999999655544322223468999999999988777654 44444333333433333
No 81
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.03 E-value=0.015 Score=49.91 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=45.2
Q ss_pred hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhh------eeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVG------VLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G------~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
..+....++.| +..+...|+.+..+.+++++++.+.+ ++.++ .+|+..|++.+++.+++.+...++
T Consensus 384 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 384 VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH------FHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred hhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh------ccCccHHHHHHHHHHHHHHHHHhc
Confidence 34566667777 56899999999999988888755543 33333 357778888777766665544433
No 82
>KOG4686|consensus
Probab=97.00 E-value=0.0086 Score=50.24 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=53.1
Q ss_pred cchHHHHHHHHHHHHhhhhcchhhhhhhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecCC
Q psy15816 46 EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110 (171)
Q Consensus 46 ~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~ 110 (171)
-+++.++.++-++..+.+ +..|.+...+.|+ .-|+.+|.++.+-|++-.+.|+++|++++.+
T Consensus 353 lsPy~~m~~lGLsysllA---cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~ 415 (459)
T KOG4686|consen 353 LSPYTSMTFLGLSYSLLA---CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD 415 (459)
T ss_pred ccHHHHHHHHhhhHHHHH---HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC
Confidence 478888888888877755 4568888877785 4799999999999999999999999999986
No 83
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.00 E-value=0.0045 Score=50.53 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=47.1
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHH
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGA 133 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~ 133 (171)
.....|..| ++.|...|+.+....+++.++|.+.|++.+. .+|+.+|.+.+++.+++.
T Consensus 317 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 317 PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE------IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh------hchhhHHHHHHHHHHHhc
Confidence 334456656 6689999999999999999999999998775 369999998887777654
No 84
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.97 E-value=0.0059 Score=51.71 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=51.6
Q ss_pred hhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 71 GNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 71 ~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
....+..|++.|...|+.|....+++.++|.+.|.+.+.. +|+.+|++.+++++++.+...+
T Consensus 338 ~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~------g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 338 AVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF------GAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------chHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888899999999999999999999999998863 5889999988888877765544
No 85
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=96.93 E-value=0.003 Score=50.89 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG 96 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g 96 (171)
+..+..||.....+.....+..... ...+.........+.-...+...+...+...|..| ++.+..+++.+...++++
T Consensus 57 ~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 136 (352)
T cd06174 57 LSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA 136 (352)
T ss_pred HHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHH
Confidence 4556667776666666655433221 11232222222222222223333444455567777 478999999999999999
Q ss_pred hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816 97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF 136 (171)
Q Consensus 97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~ 136 (171)
.++|.+.+.+.+. .+|+..|.+.+.+.+++.+..
T Consensus 137 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 137 LLGPLLGGLLAES------LGWRWLFLILAILGLLLALLL 170 (352)
T ss_pred HHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHH
Confidence 9999999988775 359999998877776665543
No 86
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.93 E-value=0.0026 Score=55.12 Aligned_cols=60 Identities=13% Similarity=-0.029 Sum_probs=48.2
Q ss_pred hccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 74 LDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 74 ~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.+..|+..+.+.|+.+....+++.++|.+.|++.+. .+||..|++.+++.+++.+.+.++
T Consensus 134 ~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~------~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 134 GKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFES------FGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHHHHHHHHHHh
Confidence 344466679999999999999999999999988775 469999999988877666554443
No 87
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=96.93 E-value=0.0039 Score=54.86 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 80 FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 80 ~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.+|.+.|+.+..|.++|++-|.+.|...+.+ ++|...|+...+.++++.++-+.+
T Consensus 399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~-----g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMT-----GSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999989887765 779999999888887776664443
No 88
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.92 E-value=0.0059 Score=53.84 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.+..+++.+...+++++++|.+.|++.++ .+|+..|.+.++..+++.+.+.+.
T Consensus 148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~------~g~~~~F~i~~i~~~i~~i~~~~~ 200 (500)
T PRK09584 148 LDGAFTMYYMSINIGSFFSMLATPWLAAK------YGWSVAFALSVVGMLITVVNFAFC 200 (500)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHh------hCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578888999999999999999999775 469999999887777776665543
No 89
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=96.92 E-value=0.00067 Score=58.78 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=51.3
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccc
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQL 144 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~ 144 (171)
+...+...+..| ++.|..+|+.+...++++.+++.+..++.+.. ..+.|+..|.+.+.+.++.+++++++.++++
T Consensus 141 ~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~---~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p 216 (467)
T PRK09556 141 PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF---FDGHVIGMFIFPSIIALIIGFIGLRYGSDSP 216 (467)
T ss_pred hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh---ccCcchhHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 343445556666 56799999999999999999988876665531 1146999999888777666555555544433
No 90
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.91 E-value=0.0066 Score=53.50 Aligned_cols=116 Identities=12% Similarity=0.072 Sum_probs=67.3
Q ss_pred HHHHH-HHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-c--hHHHHHHHHHHH
Q psy15816 18 MFTLA-LTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-N--FSGTIFGLANTL 91 (171)
Q Consensus 18 ~l~l~-~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~--~ag~v~gi~n~~ 91 (171)
.++.+ ..||-....|.....+.. ..............+.+.....+...+...+...|.-| + ..+..+++....
T Consensus 72 ~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~ 151 (489)
T PRK10207 72 YVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMS 151 (489)
T ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHH
Confidence 34555 788887777766655432 22211111111111111112222222333344445554 3 235678899999
Q ss_pred HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.|++.+++|.+.|++.++ .+|+++|++.++..+++.+.+.+.
T Consensus 152 ~nig~~~g~~l~g~l~~~------~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 152 INIGSLISLSLAPVIADK------FGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHHHHHHHHHHHHHHh------hChHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999876 369999999766566555555544
No 91
>PRK10091 MFS transport protein AraJ; Provisional
Probab=96.90 E-value=0.01 Score=49.91 Aligned_cols=109 Identities=8% Similarity=-0.063 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
++.+..||.....+.....+.. ..+ .++.+.-.....+.-...+...+.......+..| +..+.+.++......++
T Consensus 61 l~dr~g~r~~~~~~~~~~~~~~~l~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 139 (382)
T PRK10091 61 FSSRYSLKHILLFLVALCVIGNAMFTL-SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVA 139 (382)
T ss_pred HHccCccHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHH
Confidence 4556667777766665555432 222 2333322221111111111111222233345555 45688899999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
..++|.+.+++.+. .+||.+|.+.+.+.++..+
T Consensus 140 ~~~g~~l~~~l~~~------~gwr~~f~~~~~~~~~~~~ 172 (382)
T PRK10091 140 NLLGIPLGTYLSQE------FSWRYTFLLIAVFNIAVLA 172 (382)
T ss_pred HHHhccHHHHHhhh------ccHHHHHHHHHHHHHHHHH
Confidence 99999998887664 4699999998877665544
No 92
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.88 E-value=0.0091 Score=50.10 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=44.6
Q ss_pred hhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 73 GLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 73 ~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
..|..+ +..+...++.+....++..++|.+.|++.+. .+|+.+|.+.+.+.++..+...++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 121 PRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL------FGWRACYLFLLLLGAGVTFSMARW 182 (394)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cChHHHHHHHHHHHHHHHHHHHHh
Confidence 345444 4568888899999999999999999988664 369999998777665554443333
No 93
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.87 E-value=0.011 Score=49.68 Aligned_cols=68 Identities=6% Similarity=0.027 Sum_probs=50.3
Q ss_pred hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816 69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
..+...|..| +..+...+..+...++++.++|.+.|++.++. +|+..|.+.+++.+++.+..+...+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~------g~~~~f~~~~~~~l~~~~~~~~~~~~ 374 (381)
T PRK03633 306 AMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY------SDNLLFIMIASVSFIYLLMLLRKAGH 374 (381)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHHHHHhccCC
Confidence 3343445555 45677788888899999999999999998863 58889999888887776655544333
No 94
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.86 E-value=0.013 Score=49.54 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=48.5
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF 136 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~ 136 (171)
....+...|..| ++.+...++......++.++++.+.+++.+.. .+||..|.+.+.+.++..+..
T Consensus 113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~-----~gw~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV-----LGWGNTYLLMAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc-----cCHHHHHHHHHHHHHHHHHHH
Confidence 344455556666 45799999999888999999999888776642 479999999888776655543
No 95
>PRK03699 putative transporter; Provisional
Probab=96.80 E-value=0.0055 Score=51.71 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=47.8
Q ss_pred hhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 70 LGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 70 ~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.+...+..|+..+...|..+..+.+++.++|.+.|++.+.. +|+.+|++.+++++++.+..+++
T Consensus 316 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 316 ITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHF------GLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh------CchhhhhhhHHHHHHHHHHHHHH
Confidence 33344555655577788899999999999999999998863 58889988888877775544443
No 96
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.76 E-value=0.0044 Score=52.55 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=47.5
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
.+...|..| ++.+...++.+...+++.+++|.+.|.+.+. .+|++.|.+.+...+++.+....
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~------~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T PRK10489 132 LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA------GGVAWNYGLAAAGTFITLLPLLR 195 (417)
T ss_pred hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHh
Confidence 344446555 5678999999999999999999999988775 36888888877776666554433
No 97
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.71 E-value=0.024 Score=48.59 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhc--cC--CcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAP--NF--SEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLS 92 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~--~~--~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g 92 (171)
.+..+..||.....|....++..+. .. ..+...-+....+.-...++..........++.| ++.+...++.+...
T Consensus 60 ~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (410)
T TIGR00885 60 IFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFN 139 (410)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHH
Confidence 5667778888887777665543221 11 1122211111111111112222222233335555 56788899999999
Q ss_pred hhhhhhhhhhhheeecCCCc--------------------cccCChhHHHHHHHHHHHHHHHhh
Q psy15816 93 SFGGFVSSHIVGVLTDGDKV--------------------RHFRPWQYVFMVLTTTYTVGAIVF 136 (171)
Q Consensus 93 ~l~gii~p~i~G~iv~~~~~--------------------~~~~~w~~vF~i~a~i~~~g~i~~ 136 (171)
+++..++|.+.+.+...... .+..+||.+|.+.+.+.++..+.+
T Consensus 140 ~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 140 PFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987766533100 011359999998887766555444
No 98
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.62 E-value=0.015 Score=49.18 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 82 GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 82 g~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
+...++.+...+++.+++|.+.|++.++ -+||..|++.+.+.++..+...++.+
T Consensus 142 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~------~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 142 VMFSSFLRAQVSLAWVIGPPLAYALAMG------FSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHh------cChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4556888999999999999999998775 37999999988877766655444433
No 99
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.58 E-value=0.023 Score=51.56 Aligned_cols=113 Identities=10% Similarity=0.182 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhh--hccCCcc--h-HHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHH
Q psy15816 17 AMFTLALTFNGAVTAGYLGNGLDI--APNFSED--P-IFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANT 90 (171)
Q Consensus 17 ~~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~--~-~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~ 90 (171)
..++-...||.+...|.+...+-. ... ..+ . ..+..+..++.+.... ......|+.| +|.+...++...
T Consensus 99 G~LSDlfGRr~~~i~g~~l~vvG~Iv~at-A~~~~~~iag~~l~GvgaG~~~~----~~~~isEl~p~k~R~~~~~~~~~ 173 (599)
T PF06609_consen 99 GRLSDLFGRRYFFIIGSLLGVVGSIVCAT-AQNMNTFIAGMVLYGVGAGVQEL----AALAISELVPNKWRGLGLAIASI 173 (599)
T ss_pred HHHHHHhcchHHHHHHHHHHHhHHHHhhc-CCcHHHHHHHHHHHHHhhHHHHH----HHHHHHHhcccchhhhHhHHHHH
Confidence 357778889999988877665432 222 122 1 1223332222222111 1223457777 676666665555
Q ss_pred HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
.......++|.+...+..+ .+||+.|++.+++..++.+...++.
T Consensus 174 ~~i~~~~~~~~ia~~~~~~------~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 174 PFIITTWISPLIAQLFAAH------SGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred HHHhhhcccHHHHHHhccC------CCcchHHHHHHHHHHHHHHHHHHHh
Confidence 5445455667765554332 5799999998887777665544443
No 100
>PRK09528 lacY galactoside permease; Reviewed
Probab=96.58 E-value=0.0039 Score=53.02 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheeccccc
Q psy15816 81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQ 145 (171)
Q Consensus 81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q 145 (171)
.|..+|..+..++++..++|.+.|.+.+. +|+.+|++.+++.++..+.+....+++++
T Consensus 139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 196 (420)
T PRK09528 139 SGFEYGRARMWGSLGWALCAFIAGILFNI-------NPQINFWLGSGSALILLVLLFFAKPDAPS 196 (420)
T ss_pred ccccchhhHHhhhHHHHHHHHHHHHHHhc-------CchHhHHHHHHHHHHHHHHHhcccccccc
Confidence 47788999999999999999999988653 58899998887777766665555444333
No 101
>PRK10054 putative transporter; Provisional
Probab=96.58 E-value=0.0075 Score=51.21 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=49.7
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCC
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWN 148 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~ 148 (171)
.....+.+| +..|..++..+ .+.++..++|.+.|++.++. +.+..|.+.+....+..+. .+.+.++.||.
T Consensus 320 ~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~------g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 390 (395)
T PRK10054 320 YMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL------PPWSLFVILALAIVAAWLL--MLKGMRARPWG 390 (395)
T ss_pred HHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc------ChhhHHHHHHHHHHHHHHH--HHhccccCccc
Confidence 334446667 46677787655 67789999999999999873 4666776655554444432 23566778998
Q ss_pred CCC
Q psy15816 149 TPK 151 (171)
Q Consensus 149 ~~~ 151 (171)
+|.
T Consensus 391 ~~~ 393 (395)
T PRK10054 391 QPA 393 (395)
T ss_pred CCc
Confidence 874
No 102
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.57 E-value=0.011 Score=56.78 Aligned_cols=71 Identities=11% Similarity=-0.040 Sum_probs=51.3
Q ss_pred hhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 63 GAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 63 ~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
++..+...+...|+.| +..+..+|+.++..+++.+++|.+.|++.+. .+|+..|...+.+.+++.++...+
T Consensus 123 a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1140)
T PRK06814 123 ALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS------GNFVILVALLMGIAVLGWLASLFI 194 (1140)
T ss_pred HhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHhhC
Confidence 3334445555567666 5679999999999999999999999999886 469999855555555554444333
No 103
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.51 E-value=0.0037 Score=52.65 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816 82 GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL 137 (171)
Q Consensus 82 g~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~ 137 (171)
+..+|.....++++..++|.+.|.+.+ .+|+..|++.+.+.++..+...
T Consensus 132 ~~~~g~~~~~~~~g~~~g~~~~g~l~~-------~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 132 NFEYGKARMFGCVGWALCASIAGILFS-------IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred ccccchhhhhcccHHHHHHHHHhhhhc-------cCchHHHHHHHHHHHHHHHHHH
Confidence 556788889999999999999887754 2599999998887776665443
No 104
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=96.51 E-value=0.0094 Score=49.41 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=42.0
Q ss_pred hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHH
Q psy15816 69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVL 125 (171)
Q Consensus 69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~ 125 (171)
......|..| +..|.++|+.+..+++++.++|.+.|++.+.. ++|+.+|...
T Consensus 349 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~-----g~~~~~~~~~ 401 (405)
T TIGR00891 349 LPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRL-----DEYGTALASL 401 (405)
T ss_pred HHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----cccchhHHhh
Confidence 3445557677 56899999999999999999999999998874 5688777653
No 105
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.47 E-value=0.017 Score=51.57 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHHHHhhhhcchhhhhhhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHH
Q psy15816 46 EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMV 124 (171)
Q Consensus 46 ~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i 124 (171)
.+.+.+...+.+.............+..+...|+ +.|-++++.++....+..++..+.|.+.+.. +-+.++.+
T Consensus 305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~------g~~~al~~ 378 (524)
T PF05977_consen 305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF------GVRTALLI 378 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHHHHHHH
Confidence 4444444444443333333344555666777785 4899999999999999999999999998763 46677888
Q ss_pred HHHHHHHHHHhhhhe
Q psy15816 125 LTTTYTVGAIVFLIF 139 (171)
Q Consensus 125 ~a~i~~~g~i~~~~~ 139 (171)
.++.++++.++....
T Consensus 379 a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 379 AGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHHHHHHh
Confidence 887777777766554
No 106
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.46 E-value=0.0071 Score=52.82 Aligned_cols=112 Identities=11% Similarity=0.036 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchH----HHHHHHHHHHHhhhhcchhh----hhhhhcccc-chHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPI----FAVAMFTLALTFNGAVTAGY----LGNGLDIAP-NFSGTIFG 86 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~----~av~ll~la~~~~~~~~~g~----~~~~~diap-~~ag~v~g 86 (171)
.++.+..||.....+.....+.. ..+ ..+.. ++..++.+.=.+.|+..++. .+...|..| ++.|...+
T Consensus 79 ~l~Dr~Grr~~l~~~~~l~~i~~~~~a~-~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~ 157 (490)
T PRK10642 79 MLGDKYGRQKILAITIVIMSISTFCIGL-IPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS 157 (490)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence 35667788887777766655432 222 12221 11122333333334433333 344456676 56788888
Q ss_pred HHHHHHhhhhhhhhhh----hheeecCCCccccCChhHHHHHHHHHHHHH
Q psy15816 87 LANTLSSFGGFVSSHI----VGVLTDGDKVRHFRPWQYVFMVLTTTYTVG 132 (171)
Q Consensus 87 i~n~~g~l~gii~p~i----~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g 132 (171)
+.+....++.++++.+ .+++.+... ...+||..|++.+.+.+++
T Consensus 158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~--~~~gWR~~f~i~~~~~l~~ 205 (490)
T PRK10642 158 WLDFGSIAGFVLGAGVVVLISTIVGEANF--LDWGWRIPFFIALPLGIIG 205 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHh--cCccHHHHHHHHHHHHHHH
Confidence 8887776666666544 333322100 1257999999976555543
No 107
>KOG0255|consensus
Probab=96.46 E-value=0.013 Score=51.42 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhh-ccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhc-cccchHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIA-PNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLD-IAPNFSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~-~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~d-iap~~ag~v~gi~n~~g~l~ 95 (171)
-++.+.+||.....+.+...++-. ..+..|...-.++-.+.-.+.+......+....| +.|++.+.+..+ ......+
T Consensus 140 ~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~ 218 (521)
T KOG0255|consen 140 PLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVG 218 (521)
T ss_pred ehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHH
Confidence 366678999999888887776532 2223443332332222222222222222344456 446788888888 8888888
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCC
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWN 148 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~ 148 (171)
+.+.|...+++.+ +||+.+++......+..+.+ +...|-..|-
T Consensus 219 ~~~~~~~~a~~~~--------~Wr~~~~~~~~~~~~~~~~~--~l~~Es~rwl 261 (521)
T KOG0255|consen 219 GLMLPAGAAYITR--------DWRWLFWIISIPSGLFLLLW--FLPPESPRWL 261 (521)
T ss_pred HHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHH--HccCcChHHH
Confidence 8999999888855 59999998777766655542 3334556663
No 108
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=96.44 E-value=0.021 Score=48.98 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=46.4
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCc--cccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKV--RHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~--~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
.+...|..| ++.|...++.+....++.++++.+.+.+.+.... -...+||.+|.+.+...++..+...+
T Consensus 142 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 142 PMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred HHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHc
Confidence 444457777 6689999999999999999888765544321100 01247999999887777666554433
No 109
>KOG0252|consensus
Probab=96.40 E-value=0.0057 Score=53.87 Aligned_cols=127 Identities=18% Similarity=0.159 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhh----ccC-CcchHHHHHHHHHHHHhhhhc-chhhhhhhhcccc-chHHHHHHHHH
Q psy15816 17 AMFTLALTFNGAVTAGYLGNGLDIA----PNF-SEDPIFAVAMFTLALTFNGAV-TAGYLGNGLDIAP-NFSGTIFGLAN 89 (171)
Q Consensus 17 ~~l~l~~ark~~~~~G~~~~~l~l~----~~~-~~~~~~av~ll~la~~~~~~~-~~g~~~~~~diap-~~ag~v~gi~n 89 (171)
..+.-.+.||..+..|+....++.+ ++. ..+....+.+.++..++..+. .+.....+.++.| +..|+--||+.
T Consensus 369 v~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsA 448 (538)
T KOG0252|consen 369 VYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISA 448 (538)
T ss_pred EEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHH
Confidence 3455678999999999988876432 222 123333444555555554432 1222345667778 67899999999
Q ss_pred HHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccc
Q psy15816 90 TLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQL 144 (171)
Q Consensus 90 ~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~ 144 (171)
..|-++++++....+++++++.- ...+.+.+|++.+++++.|.++.+++-..+.
T Consensus 449 A~GK~GAivg~~~F~~~t~~~yp-~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 449 ASGKAGAIVGAFGFLYLTDHNYP-PNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhccchHHHHHHHhhHhhhccCC-ccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 99999999999998888884311 1246889999999999999998887754333
No 110
>PTZ00207 hypothetical protein; Provisional
Probab=96.39 E-value=0.025 Score=51.35 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=46.8
Q ss_pred hhhhhccccchHHHHHHHHHHHHhhhhhh-hhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee-cccccCC
Q psy15816 70 LGNGLDIAPNFSGTIFGLANTLSSFGGFV-SSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG-TGQLQPW 147 (171)
Q Consensus 70 ~~~~~diap~~ag~v~gi~n~~g~l~gii-~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~-~~e~q~w 147 (171)
.....+..|++.|.+.|+.+....+++.+ +|+..+++. ++|+..|++.+.+.++..+++..+. ..+...|
T Consensus 142 ~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--------~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~ 213 (591)
T PTZ00207 142 VVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS--------DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLT 213 (591)
T ss_pred HHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhh
Confidence 33445666877899999999999999975 555566542 2477888887777666655555543 3333334
No 111
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=96.39 E-value=0.037 Score=47.78 Aligned_cols=116 Identities=11% Similarity=0.103 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhh-hhccCCcchHHHHHHHHHHHHhhhhcchhhhh----hhhcccc-chHHHHHHHHH
Q psy15816 16 VAMFTLALTFNGAVTAGYLGNGLD-IAPNFSEDPIFAVAMFTLALTFNGAVTAGYLG----NGLDIAP-NFSGTIFGLAN 89 (171)
Q Consensus 16 ~~~l~l~~ark~~~~~G~~~~~l~-l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~----~~~diap-~~ag~v~gi~n 89 (171)
+..++-+.-||......+..-.+. ++.....|... +.++=...++..+.+|. ...++.| ++.+...++++
T Consensus 68 l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~----Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~ 143 (394)
T COG2814 68 LALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAV----LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVF 143 (394)
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHH
Confidence 345666777777664433322221 11111122222 22233333344344553 4456666 67899999999
Q ss_pred HHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 90 TLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 90 ~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
+.-.++-+++..+..++-|. -+||..|...+.+.++..+.-.....
T Consensus 144 ~G~tlA~v~GvPLGt~ig~~------~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 144 TGLTLATVLGVPLGTFLGQL------FGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHhccHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998887665 47999999988887777665444443
No 112
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.38 E-value=0.017 Score=47.76 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=50.7
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCcc----------ccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVR----------HFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~----------~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
+....|+.| +++....++.+.+..++.+++|++.+.+......+ ....|+..+++.+.+.++..+++.+
T Consensus 32 n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~ 111 (310)
T TIGR01272 32 NPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAF 111 (310)
T ss_pred HHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445544 67788999999999999999999988777432100 0146999999777776666666665
Q ss_pred eeccc
Q psy15816 139 FGTGQ 143 (171)
Q Consensus 139 ~~~~e 143 (171)
...+|
T Consensus 112 ~~~p~ 116 (310)
T TIGR01272 112 LPLPE 116 (310)
T ss_pred ccCCC
Confidence 54443
No 113
>PRK12307 putative sialic acid transporter; Provisional
Probab=96.34 E-value=0.025 Score=47.77 Aligned_cols=40 Identities=23% Similarity=0.094 Sum_probs=33.9
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~ 109 (171)
+....|..| +..|.+.|+.+..+.+++.++|.+.|++.+.
T Consensus 343 ~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~ 383 (426)
T PRK12307 343 PKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383 (426)
T ss_pred HHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence 344567777 5689999999999999999999999998776
No 114
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.32 E-value=0.03 Score=49.48 Aligned_cols=85 Identities=7% Similarity=-0.066 Sum_probs=56.0
Q ss_pred hhhhcchhhhhhhhccccc---hHHHHHHHHHHHHhhhhhhhhhhhheee--c---CCCcc----ccCChhHHHHHHHHH
Q psy15816 61 FNGAVTAGYLGNGLDIAPN---FSGTIFGLANTLSSFGGFVSSHIVGVLT--D---GDKVR----HFRPWQYVFMVLTTT 128 (171)
Q Consensus 61 ~~~~~~~g~~~~~~diap~---~ag~v~gi~n~~g~l~gii~p~i~G~iv--~---~~~~~----~~~~w~~vF~i~a~i 128 (171)
......+.+.+...|+.|+ +.+...++.+...++++++++.+.|+.. + ...+. -..+.+.+|++.+++
T Consensus 127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~ 206 (477)
T TIGR01301 127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL 206 (477)
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence 3344445666777898883 3468899999999999999988766531 1 00000 113789999998888
Q ss_pred HHHHHHhhhheecccccC
Q psy15816 129 YTVGAIVFLIFGTGQLQP 146 (171)
Q Consensus 129 ~~~g~i~~~~~~~~e~q~ 146 (171)
++++.++-++.. +|+++
T Consensus 207 l~i~~l~t~~~v-~E~~~ 223 (477)
T TIGR01301 207 LAILTYIALSAV-KENPL 223 (477)
T ss_pred HHHHHHHHeeee-eccCC
Confidence 888877666554 44443
No 115
>PRK09952 shikimate transporter; Provisional
Probab=96.30 E-value=0.014 Score=50.18 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchH----HHHHHHHHHHHhhhhcchhhh----hhhhcccc-chHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPI----FAVAMFTLALTFNGAVTAGYL----GNGLDIAP-NFSGTIFG 86 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~----~av~ll~la~~~~~~~~~g~~----~~~~diap-~~ag~v~g 86 (171)
.+..+..||.....+.....+.. ..+ .++.. .+...+.+.-.+.|+..++.+ ....+..| ++.|...+
T Consensus 86 ~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~ 164 (438)
T PRK09952 86 HFGDRLGRKRMLMLTVWMMGIATALIGL-LPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSS 164 (438)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHH
Confidence 45567788888877776665432 222 12221 122223333333444333333 34456666 56788888
Q ss_pred HHHHHHhhhhhhhhhhhheeecCCCc--cccCChhHHHHHHHHHHHH
Q psy15816 87 LANTLSSFGGFVSSHIVGVLTDGDKV--RHFRPWQYVFMVLTTTYTV 131 (171)
Q Consensus 87 i~n~~g~l~gii~p~i~G~iv~~~~~--~~~~~w~~vF~i~a~i~~~ 131 (171)
..+....++.++++.+.+.+...... ....+||.+|.+.+...++
T Consensus 165 ~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 165 GVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 88888888888877665544321000 0114799999987665443
No 116
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.30 E-value=0.081 Score=44.78 Aligned_cols=36 Identities=11% Similarity=-0.027 Sum_probs=28.6
Q ss_pred hccc-cchHHHHHHHHHHHHhhhh-hhhhhhhheeecC
Q psy15816 74 LDIA-PNFSGTIFGLANTLSSFGG-FVSSHIVGVLTDG 109 (171)
Q Consensus 74 ~dia-p~~ag~v~gi~n~~g~l~g-ii~p~i~G~iv~~ 109 (171)
.+.. |++.|..+|+.+...+++. +++|.+.|++.+.
T Consensus 131 ~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~ 168 (402)
T TIGR00897 131 VYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA 168 (402)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3443 4678999999999999986 6789888888765
No 117
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=96.28 E-value=0.013 Score=49.92 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=49.5
Q ss_pred hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816 68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL 137 (171)
Q Consensus 68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~ 137 (171)
...+...+.+| ++.|.++|+.++...+++.++|.+.|++.+++. +.+..+..|...+.+.+++.+...
T Consensus 317 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 317 ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK--ALNQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHH
Confidence 33455557777 678999999999999999999999999998742 112345667666666666665543
No 118
>PRK10091 MFS transport protein AraJ; Provisional
Probab=96.27 E-value=0.028 Score=47.22 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=41.4
Q ss_pred HHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheeccccc
Q psy15816 87 LANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQ 145 (171)
Q Consensus 87 i~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q 145 (171)
..+....++..++|.+.|++.+.+ ++|+.+|.+.+++.++.......+.+.++|
T Consensus 328 ~~~~~~~~g~~~Gp~~~G~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (382)
T PRK10091 328 GGQIAFNLGSAIGAYCGGMMLTLG-----LAYNYVALPAALLSFAAMSSLLLYGRYKRQ 381 (382)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcc-----cCcchHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 347788999999999999998864 579999999887776666655555555544
No 119
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.02 Score=49.84 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=52.9
Q ss_pred hhhccccc-hHHHHHHHHHHHHhh-hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816 72 NGLDIAPN-FSGTIFGLANTLSSF-GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 72 ~~~diap~-~ag~v~gi~n~~g~l-~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
...|.+|+ -+|++.|+.+.++-+ +...+....|+++|. .+|..+|.+..+..+++.+.++.+.+.
T Consensus 370 ~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~------~gW~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 370 AAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT------WGWDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred HHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec------CCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 44689995 589999999999999 777788889999886 369999999888888888777766443
No 120
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.16 E-value=0.071 Score=46.85 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=50.6
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL 137 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~ 137 (171)
....+...|..| ++.|...++.+....++.++++.+.+++.++. .+||.+|++.+++.++..+...
T Consensus 126 i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~-----~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 126 IVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY-----LGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCHHHHHHHHHHHHHHHHHHHH
Confidence 344455557666 66799999999999999999999988887632 4799999998887776655433
No 121
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.07 E-value=0.034 Score=45.59 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchH----HHHHHHHHHHHhhhhcchh----hhhhhhcccc-chHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPI----FAVAMFTLALTFNGAVTAG----YLGNGLDIAP-NFSGTIFG 86 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~----~av~ll~la~~~~~~~~~g----~~~~~~diap-~~ag~v~g 86 (171)
.++.+..||.....+.....+.. .++. .+.. ....++.+.-.+.|...+. ......|..| +..+...+
T Consensus 57 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 135 (394)
T TIGR00883 57 HFGDRIGRKKTLVITLLMMGIGTLLIGLL-PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGS 135 (394)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhC-CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHH
Confidence 34567778887777766555432 2221 2211 1111222233333332222 2333445555 56788999
Q ss_pred HHHHHHhhhhhhhhhhhheeecCCC--ccccCChhHHHHHHHHHHHHHHH
Q psy15816 87 LANTLSSFGGFVSSHIVGVLTDGDK--VRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 87 i~n~~g~l~gii~p~i~G~iv~~~~--~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
+.+....++.+++|.+.+.+...-. .....+||..|.+.+.+.+++..
T Consensus 136 ~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 136 FQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 9999988888888887554432100 00124799999887766655543
No 122
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.06 E-value=0.054 Score=45.83 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=33.8
Q ss_pred chhhhhhhhccc--------cchHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816 66 TAGYLGNGLDIA--------PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 66 ~~g~~~~~~dia--------p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~ 109 (171)
.+..++...|.. ++..|..+|+.|+...+++.+++.+.|++.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555543 34579999999999999999999999988754
No 123
>KOG2615|consensus
Probab=96.04 E-value=0.0076 Score=51.98 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhccCCcchHHHHHHH-HHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMF-TLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~~~~~~~~~av~ll-~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
.++-+..||..+.+|..+.++...-+ +.+..++.+.+ -.-.+..-.+.+-..+...|+.+ ++.+..++.+++...++
T Consensus 90 ~~SD~yGRkpvll~c~~~va~s~ll~-~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lG 168 (451)
T KOG2615|consen 90 CLSDRYGRKPVLLACLIGVALSYLLW-ALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLG 168 (451)
T ss_pred hhhhhhCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcc
Confidence 67889999999999998888754433 23332222222 11222222223344566678876 78899999999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHH-HHHHHHHHHHHHhhhheecccc
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVF-MVLTTTYTVGAIVFLIFGTGQL 144 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF-~i~a~i~~~g~i~~~~~~~~e~ 144 (171)
-+++|++-|++.+-. +..++|-.++ -+...++..+.+.+..+.-+|.
T Consensus 169 filGPmIGgyla~f~--~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 169 FILGPMIGGYLAQFS--SISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred hhhcchhhhHHHhhH--hhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999998821 0224554444 2333444444333333333333
No 124
>PF13347 MFS_2: MFS/sugar transport protein
Probab=96.04 E-value=0.026 Score=48.25 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=51.9
Q ss_pred cchhhhhhhhcccc--chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccC-ChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 65 VTAGYLGNGLDIAP--NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFR-PWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 65 ~~~g~~~~~~diap--~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~-~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
....+.+...|+.+ +....+.+..+..+.+++++...+.+.+.+....+... +|+....+.+++.+++.++.....+
T Consensus 120 ~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~k 199 (428)
T PF13347_consen 120 VQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVK 199 (428)
T ss_pred ccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheee
Confidence 34555666667776 34678888888888888876666666666433211122 6999998888888877776555543
Q ss_pred c
Q psy15816 142 G 142 (171)
Q Consensus 142 ~ 142 (171)
.
T Consensus 200 e 200 (428)
T PF13347_consen 200 E 200 (428)
T ss_pred e
Confidence 3
No 125
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.00 E-value=0.045 Score=46.81 Aligned_cols=113 Identities=14% Similarity=0.045 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhhHHHHhhh--hccCCcch----HHHHHHHHHHHHhhhhcchhh----hhhhhcccc-chHHHHHHH
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDI--APNFSEDP----IFAVAMFTLALTFNGAVTAGY----LGNGLDIAP-NFSGTIFGL 87 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~----~~av~ll~la~~~~~~~~~g~----~~~~~diap-~~ag~v~gi 87 (171)
++.+..||.....+.....+.. ..+. .+. ..+...+.+.=...|+..++. .+...|..| ++.|...++
T Consensus 86 l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~ 164 (432)
T PRK10406 86 IADKHGRKKSMLISVCMMCFGSLVIACL-PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASF 164 (432)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHH
Confidence 5777888887777666654422 1111 111 112223333333334333333 344456666 567888888
Q ss_pred HHHHHhhhhhhhhhhhheeecCCC--ccccCChhHHHHHHHHHHHHH
Q psy15816 88 ANTLSSFGGFVSSHIVGVLTDGDK--VRHFRPWQYVFMVLTTTYTVG 132 (171)
Q Consensus 88 ~n~~g~l~gii~p~i~G~iv~~~~--~~~~~~w~~vF~i~a~i~~~g 132 (171)
.+...+.+.++++.+...+...-. .....+||..|.+.++..++.
T Consensus 165 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 165 QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 777666666666654333221000 001257999999877666554
No 126
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=95.99 E-value=0.076 Score=45.77 Aligned_cols=94 Identities=29% Similarity=0.341 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhhhcchhhhh----hhhcccc-chHHHHHHHHHHH-HhhhhhhhhhhhheeecCCCccccCChhHHH
Q psy15816 49 IFAVAMFTLALTFNGAVTAGYLG----NGLDIAP-NFSGTIFGLANTL-SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVF 122 (171)
Q Consensus 49 ~~av~ll~la~~~~~~~~~g~~~----~~~diap-~~ag~v~gi~n~~-g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF 122 (171)
+.......++..+.|...+.++. ...+.+| +..++..++.+.. ..+++.++..+.|++.|+-..+..-.|..+|
T Consensus 298 ~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~ 377 (400)
T PF03825_consen 298 PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVF 377 (400)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 33333333333344444444443 2335667 5678899988876 4688999999999999874321223578889
Q ss_pred HHHHHHHHHHHHhhhheecc
Q psy15816 123 MVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 123 ~i~a~i~~~g~i~~~~~~~~ 142 (171)
.+.+++.++..+.|.++.|+
T Consensus 378 ~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 378 LVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 99999888888888887654
No 127
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=95.99 E-value=0.031 Score=47.40 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=48.8
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
+...+...|+.| +..+.+.|+.+...+++.+++|.+.|++.+. .|+..|.+.+..++++.+....+
T Consensus 107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-------~~~~~~~i~~~~~~~~~~~~~~l 173 (393)
T PRK11195 107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-------HAEAALAVCALIYLLAALFNLFI 173 (393)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 444455567777 5679999999999999999999999998774 28888887776666555444333
No 128
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=95.96 E-value=0.038 Score=52.78 Aligned_cols=90 Identities=10% Similarity=-0.049 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhh----hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816 20 TLALTFNGAVTAGYLGNGLDI----APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF 94 (171)
Q Consensus 20 ~l~~ark~~~~~G~~~~~l~l----~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l 94 (171)
+-+..||.....+.+...+.. +.....+.+...++..+.-...++..+...+...|+.| +..+.++|+.+...++
T Consensus 71 ~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i 150 (1146)
T PRK08633 71 ADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIV 150 (1146)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHH
Confidence 335667777666554433211 11111222222222222222333333444555667776 5679999999999999
Q ss_pred hhhhhhhhhheeecC
Q psy15816 95 GGFVSSHIVGVLTDG 109 (171)
Q Consensus 95 ~gii~p~i~G~iv~~ 109 (171)
+.+++|.+.|++.+.
T Consensus 151 g~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 151 AILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 129
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=95.85 E-value=0.025 Score=48.54 Aligned_cols=65 Identities=29% Similarity=0.502 Sum_probs=52.2
Q ss_pred hhcccc-chHHHHHHHHHHHHhhhh-hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheeccc
Q psy15816 73 GLDIAP-NFSGTIFGLANTLSSFGG-FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQ 143 (171)
Q Consensus 73 ~~diap-~~ag~v~gi~n~~g~l~g-ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e 143 (171)
..+..| +..|...|+.|..+++++ +++|.+.|.+.++. +|+.+|.+.+++.+++.+..+++.+.|
T Consensus 370 ~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 370 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------GWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc------cchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446667 567999999999999986 57999999998863 599999998888888877777665544
No 130
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=95.78 E-value=0.056 Score=47.70 Aligned_cols=65 Identities=18% Similarity=0.368 Sum_probs=53.6
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.+...++.| ++.+--+|+.++.+-..++++|++.|.+++.+ ++-|..|....++.++|.++....
T Consensus 402 Rs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t-----g~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 402 RSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT-----GSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHHhhc
Confidence 444456778 56799999999999999999999999999986 678888888888888888766443
No 131
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.77 E-value=0.081 Score=44.41 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=49.3
Q ss_pred hhcchhhhhhhhc-ccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 63 GAVTAGYLGNGLD-IAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 63 ~~~~~g~~~~~~d-iap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
+...+...+...+ ..| ++.|+.+++.|...++++.++|.+.|++.+. .+|+..|...+.+.+++.+
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~------~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR------FGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HccHHHHHHHHHHHHHHHH
Confidence 3333444444333 334 6789999999999999999999999999876 3588899888777766644
No 132
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=95.70 E-value=0.056 Score=45.81 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=43.7
Q ss_pred hhhcchhhhhhhhccccch--HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHH
Q psy15816 62 NGAVTAGYLGNGLDIAPNF--SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTY 129 (171)
Q Consensus 62 ~~~~~~g~~~~~~diap~~--ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~ 129 (171)
.++......+..++..|++ .|.++++.|...+++..++..+.+.+.+.. -.++..|...+.+.
T Consensus 307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 371 (393)
T PRK11195 307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLG-----VPVVAVIVGFGLLV 371 (393)
T ss_pred hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHH
Confidence 3433345566667777753 599999999999999999999988664432 35666666555553
No 133
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.70 E-value=0.036 Score=46.64 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=41.2
Q ss_pred chHHHHHHH-HHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816 79 NFSGTIFGL-ANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF 136 (171)
Q Consensus 79 ~~ag~v~gi-~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~ 136 (171)
+..++..+. .|....+++++.|.+.|++.+. .+|+.+|.+.+++.+++.++-
T Consensus 339 ~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~------~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 339 RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS------IGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh------cccHHHHHHHHHHHHHHHHHH
Confidence 444555555 6789999999999999999886 359999999888887776653
No 134
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=95.41 E-value=0.093 Score=44.10 Aligned_cols=47 Identities=19% Similarity=0.168 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHH
Q psy15816 79 NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTV 131 (171)
Q Consensus 79 ~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~ 131 (171)
+..+..+|.....++++.+++|.+.|++.+. .+||..|.+.+.+.++
T Consensus 124 ~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~------~g~~~~f~~~~~~~~~ 170 (382)
T TIGR00902 124 KQFGLDYGKVRLIGSAAFIIGSALFGGLIGM------FDEQNILAILTAGLAF 170 (382)
T ss_pred HHcCCCccHHHHHHHHHHHHHHHHHHHHHHH------cChhHHHHHHHHHHHH
Confidence 3457889999999999999999999999886 3699999887655433
No 135
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=95.41 E-value=0.16 Score=42.95 Aligned_cols=73 Identities=18% Similarity=0.114 Sum_probs=45.5
Q ss_pred hhhhhhhhccc--cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCC-ccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 67 AGYLGNGLDIA--PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDK-VRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 67 ~g~~~~~~dia--p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~-~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
..+.+...++. |+..+...++.+..+++++++.+.+.+.+..... .....+|+..|.+.+++.++..+....+
T Consensus 118 ~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 193 (437)
T TIGR00792 118 IPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG 193 (437)
T ss_pred ccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555554 3556888898888888887776665544442100 0012579999998888877666554443
No 136
>PRK10133 L-fucose transporter; Provisional
Probab=95.41 E-value=0.14 Score=44.28 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhc----cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccch-HHHHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAP----NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNF-SGTIFGLANTLS 92 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~----~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~-ag~v~gi~n~~g 92 (171)
.+..+..||.....|.....+.... ....+...-.....+.-...+...........|..|+. .+...++.+...
T Consensus 83 ~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~ 162 (438)
T PRK10133 83 ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 5667778888887877666643321 11223322222111111112222223333344666644 345788999999
Q ss_pred hhhhhhhhhhhhee
Q psy15816 93 SFGGFVSSHIVGVL 106 (171)
Q Consensus 93 ~l~gii~p~i~G~i 106 (171)
.++..++|.+.+.+
T Consensus 163 ~~G~~~g~~~g~~l 176 (438)
T PRK10133 163 SFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999885543
No 137
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=95.39 E-value=0.048 Score=49.73 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=58.0
Q ss_pred HHHHHHhhhhcchhhh----hhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCcc----------c-----
Q psy15816 55 FTLALTFNGAVTAGYL----GNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVR----------H----- 114 (171)
Q Consensus 55 l~la~~~~~~~~~g~~----~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~----------~----- 114 (171)
+.++-.+.|+..+..+ +...|..| +..+...|+.+....++..+++++.|++.+.-.+. +
T Consensus 175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr 254 (633)
T TIGR00805 175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR 254 (633)
T ss_pred hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc
Confidence 3345555555544443 33446666 56899999999999999999999988876431000 0
Q ss_pred -cCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 115 -FRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 115 -~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
.+.|+..|++.+++.++..+.+.++.+
T Consensus 255 WiGaWwl~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 255 WIGAWWIGFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 124788899988888777666555543
No 138
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.35 E-value=0.099 Score=43.17 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=38.5
Q ss_pred hhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHH
Q psy15816 63 GAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMV 124 (171)
Q Consensus 63 ~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i 124 (171)
+..++...+...+.-|++.+...++. ..+.+++.+.|.+.|.+.|.. +.+..|++
T Consensus 245 s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~------g~~~a~~v 299 (310)
T TIGR01272 245 SIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCL------GIQLAFAL 299 (310)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhc------cchHHHHH
Confidence 33445545555554567778888885 678899999999999998863 35556654
No 139
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.31 E-value=0.16 Score=42.67 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
.+...|..+..++++..++|.+.|++.++ .+||..|++.+...++..+
T Consensus 126 ~~~a~~~~~~~~~lg~~igp~lgg~l~~~------~g~~~~f~~~~~~~~~~~~ 173 (382)
T PRK11128 126 IGLDYGKVRLWGSIAFVIGSALTGKLVSW------FGEQAILWILTAGVASMLL 173 (382)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHH------cChhHHHHHHHHHHHHHHH
Confidence 46677788888899999999999999876 3699999887765555443
No 140
>PRK11043 putative transporter; Provisional
Probab=95.21 E-value=0.33 Score=40.75 Aligned_cols=43 Identities=26% Similarity=0.226 Sum_probs=34.3
Q ss_pred hhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816 67 AGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 67 ~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~ 109 (171)
+.......+..|++.|.+.|+.|+....++...+.++|.+.+.
T Consensus 315 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 315 PIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4444444565677889999999999999999999999988764
No 141
>PRK12382 putative transporter; Provisional
Probab=95.17 E-value=0.18 Score=42.24 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=38.1
Q ss_pred hhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHH
Q psy15816 73 GLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTT 128 (171)
Q Consensus 73 ~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i 128 (171)
..|..| ++.+..+++.+...+++..++|.+.+++.+. .+|+.++.+...+
T Consensus 137 ~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~------~g~~~~~~~~~~~ 187 (392)
T PRK12382 137 GLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH------FGFAALALTTMVL 187 (392)
T ss_pred HHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc------cChHHHHHHHHHH
Confidence 345555 5679999999999999999999999888664 3699877765443
No 142
>PRK15075 citrate-proton symporter; Provisional
Probab=95.17 E-value=0.087 Score=45.12 Aligned_cols=108 Identities=9% Similarity=-0.036 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHH----HHHHHHHHHHhhhhcc----hhhhhhhhcccc-chHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIF----AVAMFTLALTFNGAVT----AGYLGNGLDIAP-NFSGTIFG 86 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~----av~ll~la~~~~~~~~----~g~~~~~~diap-~~ag~v~g 86 (171)
.+..+..||.....+.....+.. .++. .+... ....+.+.-.+.|+.. +.......|..| ++.|...+
T Consensus 78 ~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~ 156 (434)
T PRK15075 78 AYIDRVGRRKGLIVTLSIMASGTLLIAFV-PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTS 156 (434)
T ss_pred HHhhhhchHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHH
Confidence 55678888888877776554432 2222 22211 0011122222333332 233345567777 56799999
Q ss_pred HHHHHHhhhhhhhhhhhheeecCCCc--cccCChhHHHHHHH
Q psy15816 87 LANTLSSFGGFVSSHIVGVLTDGDKV--RHFRPWQYVFMVLT 126 (171)
Q Consensus 87 i~n~~g~l~gii~p~i~G~iv~~~~~--~~~~~w~~vF~i~a 126 (171)
+.+...+++..+++.+.+.+...-.. ....+||..|++..
T Consensus 157 ~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 157 WQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 98888887777777665544211000 01247999998744
No 143
>TIGR00895 2A0115 benzoate transport.
Probab=95.16 E-value=0.11 Score=42.70 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=36.3
Q ss_pred hhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhhee
Q psy15816 62 NGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVL 106 (171)
Q Consensus 62 ~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~i 106 (171)
.+...+..++...|..| ++.|...|+.+..+.+++.++|.+.|++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 352 VNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 33444556667778777 5689999999999999999999999876
No 144
>KOG1330|consensus
Probab=95.09 E-value=0.0089 Score=52.52 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=51.5
Q ss_pred hhhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh-hhheeccc
Q psy15816 71 GNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV-FLIFGTGQ 143 (171)
Q Consensus 71 ~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~-~~~~~~~e 143 (171)
+...|..|+ ..+.++++.|+...+++.++-+..+++.+.+ ..||+.|...+++.++.++. +++...+|
T Consensus 144 s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 144 SLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----FWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred hHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----cceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 344588884 5799999999999999998887777777765 56999999999887765554 44444333
No 145
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=94.95 E-value=0.067 Score=43.86 Aligned_cols=61 Identities=18% Similarity=0.037 Sum_probs=42.2
Q ss_pred cchhhhhhhhcccc-chHHHHHHHH-HHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHH
Q psy15816 65 VTAGYLGNGLDIAP-NFSGTIFGLA-NTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYT 130 (171)
Q Consensus 65 ~~~g~~~~~~diap-~~ag~v~gi~-n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~ 130 (171)
..+..++...|..| +..+...|+. +....+++.++|.+.|++.++. +.|+..++..+...+
T Consensus 329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~-----g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 329 YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT-----GDWYAIGYYLAALAL 391 (394)
T ss_pred HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc-----CcchhHHHHHHHHHH
Confidence 33445566667777 4567888874 4555678889999999998874 458877776555443
No 146
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=94.89 E-value=0.2 Score=43.30 Aligned_cols=96 Identities=14% Similarity=0.066 Sum_probs=64.9
Q ss_pred hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhH
Q psy15816 41 APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQY 120 (171)
Q Consensus 41 ~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~ 120 (171)
+++.+.+...+...+.+.-........+.+....+.+|+..+.+.++.+...|++-.++..+-|.+.++ .+|+.
T Consensus 293 l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~------~g~~~ 366 (394)
T COG2814 293 LTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA------LGYAA 366 (394)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hchHH
Confidence 344445555444444431111111122333333445678889999999999999999999999999887 47999
Q ss_pred HHHHHHHHHHHHHHhhhheecc
Q psy15816 121 VFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 121 vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
..++.+.+.+.+.+......+.
T Consensus 367 ~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 367 TGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998888888776665443
No 147
>KOG3764|consensus
Probab=94.84 E-value=0.17 Score=44.03 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhh----hhhhhccccch--HHHHHHHHHHH
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGY----LGNGLDIAPNF--SGTIFGLANTL 91 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~----~~~~~diap~~--ag~v~gi~n~~ 91 (171)
+..++.+|..+.+|+....+.-+-+ ++.+...- .++=.+.|...+-. .+...|.-|+. .|.++|+.-++
T Consensus 129 l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l----~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgf 204 (464)
T KOG3764|consen 129 LIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPML----FVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGF 204 (464)
T ss_pred hHHHhccccHHHHHHHHHHHHHHHHHHcchhHHH----HHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHH
Confidence 3457788888888887766432222 22332221 12222222222222 34445666743 59999999999
Q ss_pred HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
-.++-+++|.+-|.+=+- .+++..|.+.+.+.++-+..-++.
T Consensus 205 islG~lvgPpfGGilYe~------~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 205 ISLGVLVGPPFGGILYEF------AGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HhccceecCCcccchHhh------cCCcCcHHHHHHHHHHHHHHHHhe
Confidence 999999999999988664 568889999888877655544433
No 148
>PRK10504 putative transporter; Provisional
Probab=94.82 E-value=0.18 Score=43.37 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=31.0
Q ss_pred hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeec
Q psy15816 68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTD 108 (171)
Q Consensus 68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~ 108 (171)
.......+..| +..|..+|+.++...+++.++|.+.|.+.+
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445 667999999999999999999999887754
No 149
>PRK15075 citrate-proton symporter; Provisional
Probab=94.76 E-value=0.27 Score=42.09 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=32.7
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhh-hhhhhhhhhheeecCC
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSF-GGFVSSHIVGVLTDGD 110 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l-~gii~p~i~G~iv~~~ 110 (171)
+..+....|..| +..|...|+.+..+.. ++.++|.+.|++++..
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 344555667777 5678888987666665 5888999999998874
No 150
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=94.73 E-value=0.15 Score=41.35 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=35.2
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~ 109 (171)
+...+...|..| +..|...|+.++..++++.++|.+.|++.+.
T Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 320 VPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555567666 6689999999999999999999999988764
No 151
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=94.65 E-value=0.56 Score=39.59 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=42.2
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF 136 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~ 136 (171)
+...+....+.+ ++-+...++.+....+++++.+.+.|.+.+. -+|+.+|.+.+.+.+++.++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~------~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 322 AAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEA------YGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHHHHHHHH
Confidence 333444443333 2234556666777777777666789988876 369999999888887776554
No 152
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=94.57 E-value=0.16 Score=42.48 Aligned_cols=53 Identities=6% Similarity=-0.046 Sum_probs=40.1
Q ss_pred hcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHH
Q psy15816 74 LDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVG 132 (171)
Q Consensus 74 ~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g 132 (171)
.|..| +..+.+.++.+....++..++|.+.+++.+. .+|+..|.+.+.+.++.
T Consensus 138 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~------~g~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 138 IGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW------GGLAGLGLLIMLLALLG 191 (399)
T ss_pred HhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHH
Confidence 35444 5678899998888888889999999988775 36999888766554433
No 153
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=94.46 E-value=0.83 Score=38.42 Aligned_cols=38 Identities=18% Similarity=-0.037 Sum_probs=31.1
Q ss_pred hhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCC
Q psy15816 73 GLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110 (171)
Q Consensus 73 ~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~ 110 (171)
..+..|+..|.+.++.+....++..+++.+.|.+-+..
T Consensus 334 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 334 TLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred HhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 33444566799999999999999999999999887664
No 154
>KOG0569|consensus
Probab=94.40 E-value=0.32 Score=43.24 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHh----hhhccCCcchHHHHHHHHHHHHhhhh----cchhhhhhhhcccc-chHHHHHH
Q psy15816 16 VAMFTLALTFNGAVTAGYLGNGL----DIAPNFSEDPIFAVAMFTLALTFNGA----VTAGYLGNGLDIAP-NFSGTIFG 86 (171)
Q Consensus 16 ~~~l~l~~ark~~~~~G~~~~~l----~l~~~~~~~~~~av~ll~la~~~~~~----~~~g~~~~~~diap-~~ag~v~g 86 (171)
...++-+.+||...........+ .+......+ .-++.++=...|. ..+..-.-..+++| +..|.+..
T Consensus 80 ~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~----~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~ 155 (485)
T KOG0569|consen 80 SGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPS----FEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT 155 (485)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence 44678888999655444333322 112221111 1222222222222 22222233347999 67898888
Q ss_pred HHHHHHhhhhhhhhhh-hheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 87 LANTLSSFGGFVSSHI-VGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 87 i~n~~g~l~gii~p~i-~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
+.+...+++-+++-.+ .-.+..+ ...|...+....+..++..+...++
T Consensus 156 ~~~~~~~~g~ll~~~~~l~~ilGt-----~~~W~~l~~~~~i~~~~~l~~l~~~ 204 (485)
T KOG0569|consen 156 LLQIGVVIGILLGQVLGLPSLLGT-----EDLWPYLLAFPLIPALLQLALLPFL 204 (485)
T ss_pred HHHHHHHHHHHHHHHHccHHhcCC-----CcchHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888777444 3333333 3579999988887776666554443
No 155
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=94.39 E-value=1.3 Score=37.08 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=37.3
Q ss_pred hhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816 63 GAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 63 ~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~ 109 (171)
++..+...+...|..|++.|...++.+...++++.+++.+.|++.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 314 GMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 33345556666677788889999999999999999999999987554
No 156
>KOG0253|consensus
Probab=94.24 E-value=0.12 Score=44.82 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhccCCc-chHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAPNFSE-DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~~~~~-~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
.+.-+++||..+...+...++++.+.+.| +...-..++..+-++........+...-++-| .-.++-.|.....+-++
T Consensus 403 ~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIg 482 (528)
T KOG0253|consen 403 VIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIG 482 (528)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhh
Confidence 45566999999999999888877554323 33333334444433333222333455556667 34688889999999999
Q ss_pred hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
|+++|.+. +..+. ...-.+|.. +++.+++++.-++|
T Consensus 483 gI~~p~iA--~~~e~-----s~sl~i~vy-~~~~ilagIavcff 518 (528)
T KOG0253|consen 483 GIFSPVIA--MRAEL-----STSLPIFVY-GALFILAGIAVCFF 518 (528)
T ss_pred hhhhhHHH--HHhcc-----ceeehHHHH-HHHHHHHHHHheee
Confidence 99999987 32222 223445544 44555566655554
No 157
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=94.00 E-value=0.13 Score=41.94 Aligned_cols=47 Identities=28% Similarity=0.480 Sum_probs=37.5
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHH
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVF 122 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF 122 (171)
+....+..| +..|...|+.+...++++.++|.+.|++.++ .+|+..|
T Consensus 332 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------~g~~~~f 379 (379)
T TIGR00881 332 GVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG------FGWAGAF 379 (379)
T ss_pred HHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh------hcccccC
Confidence 344556666 5689999999999999999999999999886 3566543
No 158
>PRK10429 melibiose:sodium symporter; Provisional
Probab=93.89 E-value=0.13 Score=44.82 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhhhheeec
Q psy15816 79 NFSGTIFGLANTLSSFGGFVSSHIVGVLTD 108 (171)
Q Consensus 79 ~~ag~v~gi~n~~g~l~gii~p~i~G~iv~ 108 (171)
|..|..+|..++...++..+++.+.|++.+
T Consensus 363 R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 363 RCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999988887764
No 159
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=93.85 E-value=0.35 Score=42.27 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=39.7
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHH
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFM 123 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~ 123 (171)
........+++| ++.|+.+++.+.+.++++.+++.+.|++.+.-. .+.++++..+.
T Consensus 370 ~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g-~~~~~~~~~~~ 426 (468)
T TIGR00788 370 MPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG-ITCDNSNNLWL 426 (468)
T ss_pred ccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcccccchHH
Confidence 344555667777 567999999999999999999988888876531 12234554444
No 160
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=93.85 E-value=0.4 Score=41.67 Aligned_cols=126 Identities=12% Similarity=0.172 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhccC--CcchHH-----HHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAPNF--SEDPIF-----AVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLAN 89 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~~~--~~~~~~-----av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n 89 (171)
.+..+..+|.-+..|+...++...-+. .....+ +.+.+..+.++..... +.-..++.| +.+..-..+++
T Consensus 70 ~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~Letaa---Np~v~~lg~~~~a~~rlnl~q 146 (422)
T COG0738 70 LLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA---NPYVTLLGKPESAAFRLNLAQ 146 (422)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhcc---chHHHHhCCchhHHHHHHHHH
Confidence 677788888888888887776432221 122222 2333333344433322 222234444 55677788999
Q ss_pred HHHhhhhhhhhhhhheeecCCC----c-------c--ccCChhHHHHHHHHHHHHHHHhhhheecccccC
Q psy15816 90 TLSSFGGFVSSHIVGVLTDGDK----V-------R--HFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQP 146 (171)
Q Consensus 90 ~~g~l~gii~p~i~G~iv~~~~----~-------~--~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~ 146 (171)
.+..++.+++|.+.++++..+. + + ...+|+..+...+.+.++..+......-++.|+
T Consensus 147 ~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~ 216 (422)
T COG0738 147 AFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV 216 (422)
T ss_pred HhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 9999999999999888876210 0 0 123577788888888887777666655455554
No 161
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=93.83 E-value=0.19 Score=48.09 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=42.1
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHH
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGA 133 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~ 133 (171)
...++...+..| +..|.++|+.+++.++++++++.+.+.+.... .++...|.+.+.+.+++.
T Consensus 341 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~ 403 (1146)
T PRK08633 341 VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG-----LSPAGLFYLIALVTLIGT 403 (1146)
T ss_pred HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHH
Confidence 344555566666 56899999999999999988887766554421 356666766655544443
No 162
>KOG2504|consensus
Probab=93.81 E-value=0.17 Score=45.18 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 78 PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 78 p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
+++.+.+.|+......++.++.|.+.-++.+. .+||..+++.+.+.+-+.+.-..+.
T Consensus 165 ~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~------~G~r~~~l~~~~~~l~~~~~~~~~r 221 (509)
T KOG2504|consen 165 EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK------YGWRGALLIFGGISLNVLVAGALLR 221 (509)
T ss_pred HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH------hCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999999988886 5799999988888766655555443
No 163
>PRK03633 putative MFS family transporter protein; Provisional
Probab=93.79 E-value=2.1 Score=35.73 Aligned_cols=89 Identities=11% Similarity=-0.026 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhh----hhhhcccc-chHHHHHHHHHH
Q psy15816 17 AMFTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYL----GNGLDIAP-NFSGTIFGLANT 90 (171)
Q Consensus 17 ~~l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~----~~~~diap-~~ag~v~gi~n~ 90 (171)
-.+..+..||.....+.....+.... ....+...-.+ +....|...+..+ +...|..| +..+..+++.+.
T Consensus 62 g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (381)
T PRK03633 62 GYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLA----WRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMM 137 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677788887777776666543221 11223222111 1222222222222 22334444 567999999999
Q ss_pred HHhhhhhhhhhhhheeecC
Q psy15816 91 LSSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 91 ~g~l~gii~p~i~G~iv~~ 109 (171)
..+++..++|.+.+.+.+.
T Consensus 138 ~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 138 VYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 9999999999999988664
No 164
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=93.58 E-value=0.65 Score=40.98 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=42.0
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhh----hhhhhhhe-eecC----C---CccccCChhHHHHHHHHHHHHHH
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGF----VSSHIVGV-LTDG----D---KVRHFRPWQYVFMVLTTTYTVGA 133 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gi----i~p~i~G~-iv~~----~---~~~~~~~w~~vF~i~a~i~~~g~ 133 (171)
+..........| +..|...|+....++++.. +.|.+.+. +.+. . ..++...|+.++.+.+.+.++..
T Consensus 146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~ 225 (462)
T PRK15034 146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIAT 225 (462)
T ss_pred HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 344444445556 5579999998666666664 44544321 1110 0 00012348888887777777777
Q ss_pred Hhhhheecc
Q psy15816 134 IVFLIFGTG 142 (171)
Q Consensus 134 i~~~~~~~~ 142 (171)
+.+.++.++
T Consensus 226 i~~~~~~~~ 234 (462)
T PRK15034 226 IAAWSGMND 234 (462)
T ss_pred HHHHHhCCC
Confidence 666655443
No 165
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=93.43 E-value=0.14 Score=49.22 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=44.3
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHH
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYT 130 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~ 130 (171)
....+..++.+| ++.|.++|+.|+...+++.+++.+.|.+.+.. .++...|.+.+.+.+
T Consensus 353 ~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~-----~~~~~~~~~~~~~~~ 412 (1140)
T PRK06814 353 VPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG-----FSIPWIILFIALANL 412 (1140)
T ss_pred HHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHH
Confidence 345566677777 57899999999999999999999999887542 457777666555433
No 166
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=93.33 E-value=0.42 Score=42.75 Aligned_cols=68 Identities=7% Similarity=0.087 Sum_probs=49.5
Q ss_pred hhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816 62 NGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV 135 (171)
Q Consensus 62 ~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~ 135 (171)
..+..+...+...++.| +......++.+...|++.+++|.+.|.++... +-..+|.+.++.+++..+.
T Consensus 117 ~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~------G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 117 SAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF------GAAAAFLINALSFLISILA 185 (524)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 44444555566667667 46678889999999999999999999988753 3456788877766665443
No 167
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=93.19 E-value=0.55 Score=41.56 Aligned_cols=84 Identities=8% Similarity=0.139 Sum_probs=53.9
Q ss_pred HHHHhhhhcch-hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCc--cccCChh----HHHHHHHHH
Q psy15816 57 LALTFNGAVTA-GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKV--RHFRPWQ----YVFMVLTTT 128 (171)
Q Consensus 57 la~~~~~~~~~-g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~--~~~~~w~----~vF~i~a~i 128 (171)
.+-....+..+ -+|.-..|+.. +++...+++....+|++.++++.++.++.+..+. ...++|. ..+.+.++.
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 216 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICS 216 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHH
Confidence 33333344444 78999999765 7889999999999999999999998887632100 0124563 334444444
Q ss_pred HHHHHHhhhhee
Q psy15816 129 YTVGAIVFLIFG 140 (171)
Q Consensus 129 ~~~g~i~~~~~~ 140 (171)
.++...++..+.
T Consensus 217 ~~~~~~~~~~l~ 228 (472)
T TIGR00769 217 GLAIILLYWWVN 228 (472)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 168
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=93.17 E-value=1.1 Score=37.41 Aligned_cols=53 Identities=11% Similarity=-0.046 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.+...++......++.++++...+++.++ -+|+..|++.+++.++..+....+
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~------~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGK------FGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHc
Confidence 36667777777788888888878888775 469999999988877666554444
No 169
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=93.11 E-value=0.7 Score=38.84 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 80 FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 80 ~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.....+.+.-..-|+|+++++...+++.++ .+|...|.+.++..+++.+.|+.-
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~------~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQN------YGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC------S-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhccc------cchhhhhhHHHHHHHHHHHHHHhC
Confidence 456677888889999999999999999875 579999999999999998877764
No 170
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=92.94 E-value=0.48 Score=41.22 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=55.0
Q ss_pred HHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccC--ChhHHHHHHHHHHHHHHHh
Q psy15816 59 LTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFR--PWQYVFMVLTTTYTVGAIV 135 (171)
Q Consensus 59 ~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~--~w~~vF~i~a~i~~~g~i~ 135 (171)
.++.|.+.+....+...--| +.-|+..|+.. .||++..+...+.-.++... + .|+.+..+....+++..+.
T Consensus 115 ~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-----g~~~w~~~~~i~~~~l~v~~v~ 188 (417)
T COG2223 115 LGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-----GFLAWRNVAGIYVVALAIAAVL 188 (417)
T ss_pred HhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445444445 55799999988 88888776666555555442 3 4999999888888888888
Q ss_pred hhheecccccC
Q psy15816 136 FLIFGTGQLQP 146 (171)
Q Consensus 136 ~~~~~~~e~q~ 146 (171)
+.+..++.+|.
T Consensus 189 ~~~~~~d~p~~ 199 (417)
T COG2223 189 AWLGMNDVPEH 199 (417)
T ss_pred HHHHhCCChhh
Confidence 87776665554
No 171
>PRK09669 putative symporter YagG; Provisional
Probab=92.81 E-value=2.2 Score=36.54 Aligned_cols=69 Identities=22% Similarity=0.116 Sum_probs=38.2
Q ss_pred hhhhhhhhcccc--chHHHHHHHHHHHHhhhhhhhhhhhheeecCC-CccccCChhHHHHHHHHHHHHHHHh
Q psy15816 67 AGYLGNGLDIAP--NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD-KVRHFRPWQYVFMVLTTTYTVGAIV 135 (171)
Q Consensus 67 ~g~~~~~~diap--~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~-~~~~~~~w~~vF~i~a~i~~~g~i~ 135 (171)
..+.+...++.+ +..+.+.+.....+++++.+.+.+...++... +.+...+|+..+.+.+++.++..++
T Consensus 128 ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 128 VPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred chHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555543 44566777777777777666655322222110 0002246888888877776665543
No 172
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=92.81 E-value=0.28 Score=40.44 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhhhheeecCC
Q psy15816 79 NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110 (171)
Q Consensus 79 ~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~ 110 (171)
+..|...|+.+..+.+++.++|.+.|++.++.
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 318 AQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999998875
No 173
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=92.74 E-value=0.96 Score=37.93 Aligned_cols=59 Identities=7% Similarity=-0.108 Sum_probs=41.1
Q ss_pred hhhhhccccchHHHHHHHHHH-HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816 70 LGNGLDIAPNFSGTIFGLANT-LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV 135 (171)
Q Consensus 70 ~~~~~diap~~ag~v~gi~n~-~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~ 135 (171)
.....+..+++.+...++.+. ...++..++|.+.|++.|.. ++ .+|.+.+++.+++.+.
T Consensus 315 ~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~------g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 315 MRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL------GA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cH-HHHHHHHHHHHHHHHH
Confidence 333345523556888888874 46688899999999998863 34 5677777777766543
No 174
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=92.70 E-value=2.7 Score=34.63 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=23.0
Q ss_pred hhhhhccccchHHHHHHHHHHHHh-hhhhhhhhhhh
Q psy15816 70 LGNGLDIAPNFSGTIFGLANTLSS-FGGFVSSHIVG 104 (171)
Q Consensus 70 ~~~~~diap~~ag~v~gi~n~~g~-l~gii~p~i~G 104 (171)
.....|..|+..|...++.+.... ++.++++++.+
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 309 MAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456667788999999887654 55556665543
No 175
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=92.52 E-value=1.5 Score=37.02 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=40.6
Q ss_pred hccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 74 LDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 74 ~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
+...|+..+.+.++.....+++..++|.+.|++.+. .+++..|...+.+.++.++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~------~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 331 TRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDN------IGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cChhhHHHHHHHHHHHHHH
Confidence 333466557777877788889999999999999876 3577788877766655544
No 176
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=92.32 E-value=1.5 Score=39.24 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHH---HHHHHHHHHHHHHhhhheec
Q psy15816 78 PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYV---FMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 78 p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~v---F~i~a~i~~~g~i~~~~~~~ 141 (171)
|++.+.+.|+.+....++.++++.+.++++ . .+|+.- .++.-+..+++.++-+++-+
T Consensus 145 ~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s------~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 145 PSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T------LGWISYSTLNIISLVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------cCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 366799999999999999999999988843 2 235544 44544455555554444443
No 177
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=92.13 E-value=2.5 Score=34.66 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=27.7
Q ss_pred hhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhhee
Q psy15816 68 GYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVL 106 (171)
Q Consensus 68 g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~i 106 (171)
..+....|..|+..|...++.|......+.+.+.+.|.+
T Consensus 320 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 320 IAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445566677789999999999887666666667743
No 178
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=91.98 E-value=1.3 Score=37.07 Aligned_cols=53 Identities=13% Similarity=-0.040 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHHHHHH-hhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 75 DIAPNFSGTIFGLANTLS-SFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 75 diap~~ag~v~gi~n~~g-~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
+..+++.+...++.+... .++..++|.+.|++.+.. ++ ..|...+++.+.+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~------g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 320 ARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL------GA-GVFWVMALVALPALF 373 (382)
T ss_pred HCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cH-HHHHHHHHHHHHHHH
Confidence 344544577888887554 445589999999998874 34 356666666555433
No 179
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=91.94 E-value=0.79 Score=39.46 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 77 APNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 77 ap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.|+.++..+|+.+.+|-+-..++|.++|++-|.+ ++|+..+...+.+.+...++-+..
T Consensus 327 ~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~-----gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 327 DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT-----GSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred ChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc-----CChHHHHHHHHHHHHHHHHHHhhc
Confidence 3567899999999999999999999999998775 899999877666555544443333
No 180
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=91.90 E-value=0.94 Score=38.77 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=38.1
Q ss_pred HhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHH
Q psy15816 60 TFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTT 128 (171)
Q Consensus 60 ~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i 128 (171)
.+.+...+..++...+.-+++.....+...+ +.++|.+.|.+.|++.|+..+...++.+..|.+....
T Consensus 333 lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 333 AFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 3333333555666666546553332333222 3399999999999998853111123467777764433
No 181
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=91.79 E-value=0.26 Score=43.02 Aligned_cols=68 Identities=18% Similarity=0.304 Sum_probs=53.7
Q ss_pred hhhhhhh----hcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 67 AGYLGNG----LDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 67 ~g~~~~~----~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
++.++.. ..+.| +..+.-+|+.+..+-.+.+.+|.+++.+++-+ ++-|..+.....++.+|.++.+..
T Consensus 356 G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT-----g~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 356 GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT-----GSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh-----cchhhHHHHHHHHHHhhHhhEEee
Confidence 4545443 34556 56799999999999999999999999999986 567888888888888888765544
No 182
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=91.55 E-value=1.2 Score=38.92 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=51.2
Q ss_pred chhhhhhhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 66 TAGYLGNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 66 ~~g~~~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.+..++-..+++|+ ..|..+|+......++..+++.+.+...+. .+|...|...+.+.+++++++.++
T Consensus 399 ~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 399 SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP------QGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cchhhHHHHHHHHHHHHHHHHHHH
Confidence 35556666688884 589999999999999999998887755443 458888888887777776666554
No 183
>PRK10429 melibiose:sodium symporter; Provisional
Probab=91.54 E-value=1 Score=39.17 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=38.8
Q ss_pred chhhhhhhhcccc--chHHHHHHHHHHHHhhhhhhhhhhhheeecC-CCccccCChhHHHHHHHHHHHHHHH
Q psy15816 66 TAGYLGNGLDIAP--NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG-DKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 66 ~~g~~~~~~diap--~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~-~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
...+.+...|+++ +....+++.....+++++++.+.+...+++. ...+...+|+....+.+++.+++.+
T Consensus 124 ~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~ 195 (473)
T PRK10429 124 DIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTI 195 (473)
T ss_pred cchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 3455666667764 4457778887777777776665553332211 0000123577777776666665544
No 184
>PRK10133 L-fucose transporter; Provisional
Probab=91.48 E-value=0.97 Score=39.05 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=45.2
Q ss_pred HHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHH
Q psy15816 54 MFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTT 128 (171)
Q Consensus 54 ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i 128 (171)
.+.+...+.+...+..++...+..|++++...++.+. ..+++.+.|.+.|.+.+.. ++-+..|.+....
T Consensus 353 ~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~-----g~~~~~~~v~~~~ 421 (438)
T PRK10133 353 ALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAA-----GNIPTAELIPALC 421 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHhc-----cchHHHHHHHHHH
Confidence 3333444455556777777777667777888888874 5578889999999887753 2345566654333
No 185
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=91.13 E-value=3 Score=36.92 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=65.6
Q ss_pred cchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chH--------------------------HHHHHHHHHHHhhhhhh
Q psy15816 46 EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFS--------------------------GTIFGLANTLSSFGGFV 98 (171)
Q Consensus 46 ~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~a--------------------------g~v~gi~n~~g~l~gii 98 (171)
.+...+.++..++....+....-+.+...|+++ +.. +.++|.....|.+++++
T Consensus 124 ~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v 203 (477)
T PF11700_consen 124 GQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLV 203 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHH
Confidence 344667777777776666665555666667776 345 89999999999999999
Q ss_pred hhhh-hheeecCCCc-cccCChhHHHHHHHHHHHHHHHhhhheeccccc
Q psy15816 99 SSHI-VGVLTDGDKV-RHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQ 145 (171)
Q Consensus 99 ~p~i-~G~iv~~~~~-~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q 145 (171)
.-.+ ...+...... ++....|.++.+.++-.++..+-+.++.++.+.
T Consensus 204 ~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 204 ALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8777 3333322210 012346888888888877666665555444433
No 186
>KOG0255|consensus
Probab=90.90 E-value=5.8 Score=34.74 Aligned_cols=86 Identities=12% Similarity=0.099 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhHHHHhhhh--ccCCcchH--HHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816 21 LALTFNGAVTAGYLGNGLDIA--PNFSEDPI--FAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG 95 (171)
Q Consensus 21 l~~ark~~~~~G~~~~~l~l~--~~~~~~~~--~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~ 95 (171)
....||.....+.+..++.++ ........ .....-.++.++.+......+....++-| .......+..+..+.++
T Consensus 375 ~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~ 454 (521)
T KOG0255|consen 375 PEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLG 454 (521)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 334589988888777765432 22211111 33333334444444333333444455667 45788999999999999
Q ss_pred hhhhhhhhhee
Q psy15816 96 GFVSSHIVGVL 106 (171)
Q Consensus 96 gii~p~i~G~i 106 (171)
++++|.+.-..
T Consensus 455 ~i~ap~~~~~~ 465 (521)
T KOG0255|consen 455 SILAPLFPLLL 465 (521)
T ss_pred HHHHHHHHHHH
Confidence 99999986544
No 187
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=90.12 E-value=3.3 Score=34.50 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhhhh
Q psy15816 79 NFSGTIFGLANTLSSFGGFVSSHIVG 104 (171)
Q Consensus 79 ~~ag~v~gi~n~~g~l~gii~p~i~G 104 (171)
+..|...++......+++.+.+.+.+
T Consensus 323 ~~~g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 323 LRAGVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665555555555555544
No 188
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=89.62 E-value=0.24 Score=43.94 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 82 GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 82 g~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
---+++.=...|++++++|++++++.++ .+|...|.++++-+..|.+.|.+..+
T Consensus 154 D~gFt~fY~~iNiGsl~~p~i~~~~~~~------~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 154 DGGFTLFYMGINIGSLIAPIITGLLAIN------YGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred CCCccEEEEEeehHHHHHHHHHHHHHHh------hCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3345555667789999999999999886 57999999999999999888877643
No 189
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=89.61 E-value=1.6 Score=35.18 Aligned_cols=40 Identities=30% Similarity=0.511 Sum_probs=32.7
Q ss_pred hhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhh
Q psy15816 61 FNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSS 100 (171)
Q Consensus 61 ~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p 100 (171)
..+...+.......+..| ++.|.+.|+.++..+++++++|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 312 GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445555666777778777 7889999999999999999987
No 190
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=89.57 E-value=1.7 Score=37.71 Aligned_cols=56 Identities=27% Similarity=0.295 Sum_probs=40.3
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 78 PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 78 p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
|+..|-..+.....-.++++++..+.|.+.+. .+++..|.+.+.+..+..+..+++
T Consensus 119 p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~------~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 119 PESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS------FGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc------CCCeEEehHHHHHHHHHHHHHHHh
Confidence 43367777778888888999999999998776 357778888777766555444443
No 191
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=89.56 E-value=3.6 Score=36.30 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=47.2
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCC----CccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD----KVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~----~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.+...+.+| +..|.++|+.+...++++.++..+.++..... +..+...+...|...+++.+++++++.+.
T Consensus 401 ~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 401 LAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556778 67899999999999999888877765442111 00011236778888888877777766654
No 192
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=88.81 E-value=2.5 Score=36.81 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=43.5
Q ss_pred cchHHHHHHHH-HHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh-eeccccc
Q psy15816 78 PNFSGTIFGLA-NTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI-FGTGQLQ 145 (171)
Q Consensus 78 p~~ag~v~gi~-n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~-~~~~e~q 145 (171)
++..+++..+. ++...++.++.+.+.|++-|+ -+++..|++.+.+.+...++-.+ +.++++|
T Consensus 343 ~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~------~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 343 KRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR------IGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh------cCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 36677888884 788889999999999999876 36888898888776655554443 4444433
No 193
>KOG0254|consensus
Probab=88.59 E-value=5.3 Score=35.15 Aligned_cols=109 Identities=12% Similarity=0.062 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhh-hhccCCcchHHHHHHHHHHHHhhhhcchhhh----hhhhcccc-chHHHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLD-IAPNFSEDPIFAVAMFTLALTFNGAVTAGYL----GNGLDIAP-NFSGTIFGLANTL 91 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~-l~~~~~~~~~~av~ll~la~~~~~~~~~g~~----~~~~diap-~~ag~v~gi~n~~ 91 (171)
.++-...||.....+.+...+. +...... .+..+.++=.+.|+..++.. ....|++| +++|...++.+..
T Consensus 111 ~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~----~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~ 186 (513)
T KOG0254|consen 111 RLGDRIGRKKTLLLAVVLFLIGAIIIALAP----SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLF 186 (513)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHH
Confidence 4667778887666555444332 1111111 22333333334444333222 22347888 4789999988888
Q ss_pred HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816 92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV 135 (171)
Q Consensus 92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~ 135 (171)
.+++-+++ .+.|+..++. . .+||..+.+..+-.++-.+.
T Consensus 187 ~~~Gi~~~-~~~~~~~~~~---~-~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 187 ITIGILLG-YCINYGTSKV---Y-AGWRIPLGLALIPAVILALG 225 (513)
T ss_pred HHHHHHHH-HHHhhhhccC---C-ccHHHHHHHHHHHHHHHHHH
Confidence 88555555 6777776653 1 47998877655544444433
No 194
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=88.42 E-value=1.2 Score=39.76 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=47.3
Q ss_pred hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeec-CCC--ccccCChhHHHHH-HHHHHHHHHHhhhh
Q psy15816 68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTD-GDK--VRHFRPWQYVFMV-LTTTYTVGAIVFLI 138 (171)
Q Consensus 68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~-~~~--~~~~~~w~~vF~i-~a~i~~~g~i~~~~ 138 (171)
-+|.-..|+.. +++....++.+..+|++++++..++.++.+ ..+ ....++|...+.. .+.+.+.|.++...
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~ 239 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILL 239 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHH
Confidence 46888888765 788999999999999999999998887776 100 0012468766643 33444444444443
No 195
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=88.21 E-value=1.1 Score=39.09 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=31.6
Q ss_pred HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.+++.++++.+.|.+.+. .+|+.+|.+.+++.++..+.+.++
T Consensus 167 ~~~G~~vg~~l~G~l~~~------~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 167 SATGGLISSLLGGPLLDK------TLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred HHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHHHHhc
Confidence 457888899999988765 469999999888887774444444
No 196
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=88.04 E-value=10 Score=33.16 Aligned_cols=126 Identities=11% Similarity=0.146 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhh-hhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhc-cccchHHHHHHHHHHH
Q psy15816 14 FAVAMFTLALTFNGAVTAGYLGNGLD-IAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLD-IAPNFSGTIFGLANTL 91 (171)
Q Consensus 14 ~~~~~l~l~~ark~~~~~G~~~~~l~-l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~d-iap~~ag~v~gi~n~~ 91 (171)
+.+++++....-|-++..+.++.... ++..++.+ ..++-++=+..+.....-..+++..-. +.|++-..+.+.+...
T Consensus 59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s-v~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa 137 (412)
T PF01770_consen 59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS-VLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAA 137 (412)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence 44557777777787777665554322 11112222 222222222222222222233332222 2244336666666666
Q ss_pred HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccc
Q psy15816 92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQL 144 (171)
Q Consensus 92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~ 144 (171)
.-+|-+++..+.-.++... ..+++..+++..+...++.+.-+++-+.++
T Consensus 138 ~l~g~~~s~~lgQllvs~~----~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 138 TLVGRFISSLLGQLLVSFG----GVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 5555555544433333332 257888888877666666665555544433
No 197
>KOG2816|consensus
Probab=88.03 E-value=1.6 Score=38.53 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG 96 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g 96 (171)
-++.+.+||...........+-.... ....++..++..+..++ +...++..+...|+.. +....-.|+.+..-..++
T Consensus 84 ~lSD~~grk~~L~~~~~~~~l~~~~~-~~~~~~~~~~~~l~g~~-~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~ 161 (463)
T KOG2816|consen 84 ALSDRYGRKVVLLLPLFGTILPALCL-LFQGYWFFLLLGLSGGF-SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGL 161 (463)
T ss_pred HhhhhhhhhhhHHHHHHHHHHhHHHH-HHHHHHHhhhcccccch-hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHH
Confidence 46677888887766554443211000 01112222222222222 1222344555667665 667888999999999999
Q ss_pred hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.++|.+.+++.+. .++..+|.++++..+...+ |.++
T Consensus 162 ~~~p~~~~~~~~~------~~~a~~f~ia~~~~~~~~~-y~~~ 197 (463)
T KOG2816|consen 162 VIGPALGGYLVKF------LGIALVFLIAAASGILSLL-YMLL 197 (463)
T ss_pred hHHHHHHHHHHHh------cCchHHHHHHHHHHHHHHH-HHhh
Confidence 9999999998876 5688899998887777665 5444
No 198
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=86.94 E-value=1.4 Score=35.99 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhh
Q psy15816 48 PIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGG 96 (171)
Q Consensus 48 ~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~g 96 (171)
.......+.+...+.+...+..+....++.|++.|.+.|+.+..++++|
T Consensus 318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 318 LAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCCC
Confidence 3333344444455556666677777788889889999999999998864
No 199
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=86.51 E-value=2.7 Score=35.86 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=30.9
Q ss_pred hhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816 73 GLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 73 ~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~ 109 (171)
..+..| ++.|...|+.|+..++++.+++.+.|.+.++
T Consensus 373 ~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 373 ALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334345 7789999999999999999999999988764
No 200
>PRK11462 putative transporter; Provisional
Probab=85.82 E-value=10 Score=32.95 Aligned_cols=70 Identities=17% Similarity=0.041 Sum_probs=42.2
Q ss_pred cchhhhhhhhcccc--chHHHHHHHHHHHHhhhhhhhhhhhheeecCCC-ccccCChhHHHHHHHHHHHHHHH
Q psy15816 65 VTAGYLGNGLDIAP--NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDK-VRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 65 ~~~g~~~~~~diap--~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~-~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
....+++...++++ +....++++....+++++++.+.+...+++... ++...+|+....+.+++.+++.+
T Consensus 126 ~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 126 VNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 33466666666665 457888998888888888777666433332110 00123577777766666655554
No 201
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=85.62 E-value=6.3 Score=34.08 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 78 PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 78 p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
|++++.++|+..+.-++++.+++.++--+.++. ++|+..+..=+...++..++|+--
T Consensus 129 pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 129 PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccHHHHHHHHHHHHHHHHHHHhhh
Confidence 888999999999999999999888877776664 679999988888888888887754
No 202
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=85.22 E-value=9.5 Score=30.91 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=29.6
Q ss_pred hhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816 67 AGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 67 ~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~ 109 (171)
+...++.... |++.|.+.|+.-....+++.+...+-..+-++
T Consensus 116 a~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 116 ASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHhC-ccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 3334444444 88889999999999999998887774444333
No 203
>PRK09848 glucuronide transporter; Provisional
Probab=85.10 E-value=2.1 Score=36.63 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=31.0
Q ss_pred hhhhhhhhcccc--------chHHHHHHHHHHHHhhhhhhhhhhhheeec
Q psy15816 67 AGYLGNGLDIAP--------NFSGTIFGLANTLSSFGGFVSSHIVGVLTD 108 (171)
Q Consensus 67 ~g~~~~~~diap--------~~ag~v~gi~n~~g~l~gii~p~i~G~iv~ 108 (171)
+..++...|..| +..|..+|+.++...++..+++.+.|.+.+
T Consensus 338 ~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 338 TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556554 235999999999999999999888777653
No 204
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=84.91 E-value=0.025 Score=48.30 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhh----hhhhhcccc-chHHHHHHHHHHHH
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGY----LGNGLDIAP-NFSGTIFGLANTLS 92 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~----~~~~~diap-~~ag~v~gi~n~~g 92 (171)
++.+.+||.....+.+...+.. +.....+. .....+.++-.+.|+..++. .....+.+| ++.|....+.+...
T Consensus 69 ~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~ 147 (451)
T PF00083_consen 69 LADRYGRKPALIISALLMIIGSILIAFAPSY-NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFW 147 (451)
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4567778876655554443321 11111100 11222223333444433332 334446776 67788888888888
Q ss_pred hhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 93 SFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 93 ~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
.++.+++..+.-.+-+.. ....||..+.+.+...++..+
T Consensus 148 ~~G~~~~~~~~~~~~~~~---~~~~Wr~~~~~~~~~~l~~~~ 186 (451)
T PF00083_consen 148 ALGILLASLIGYIVSYYS---DNWGWRILLIFGAIPSLLVLL 186 (451)
T ss_pred cccccccccccccccccc---ccccccccccccccccccccc
Confidence 777777766532221211 124699998887766654443
No 205
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=84.71 E-value=16 Score=33.70 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhheeecCCC-ccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDK-VRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~-~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
.-..+.+.-...|+++++++++++++.++-. .+...+|..+|.+.+++++++.++|....
T Consensus 122 ~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~ 182 (654)
T TIGR00926 122 RSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGS 182 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888888899999999999998874310 00113699999999999999988887643
No 206
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=82.68 E-value=6.2 Score=36.12 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhh
Q psy15816 46 EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHI 102 (171)
Q Consensus 46 ~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i 102 (171)
.+...+..+..++....+..........+-..| ++.|+++|++.++-.++|.++..+
T Consensus 403 ~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 403 DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 343444455555544444433332333334445 678999999998888888776655
No 207
>PRK09669 putative symporter YagG; Provisional
Probab=82.29 E-value=8.3 Score=32.97 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=31.3
Q ss_pred hhhhhhhhcccc--------chHHHHHHHHHHHHhhhhhhhhhhhheeec
Q psy15816 67 AGYLGNGLDIAP--------NFSGTIFGLANTLSSFGGFVSSHIVGVLTD 108 (171)
Q Consensus 67 ~g~~~~~~diap--------~~ag~v~gi~n~~g~l~gii~p~i~G~iv~ 108 (171)
+..++...|+.+ +..|..+|+.++...++..++|.+.|.+.+
T Consensus 338 ~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 338 PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556542 335889999999999999999998888765
No 208
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=81.33 E-value=12 Score=32.58 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=49.9
Q ss_pred hhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecC----CCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816 63 GAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG----DKVRHFRPWQYVFMVLTTTYTVGAIVFL 137 (171)
Q Consensus 63 ~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~----~~~~~~~~w~~vF~i~a~i~~~g~i~~~ 137 (171)
|....+..+..+|+++ +.+|+..|.-...-.++--++..+.|.+.|- ...+....|..||.+.+.+++++..+-.
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666788889875 6788877776665555555544444443321 0000235799999999988888776655
Q ss_pred heeccc
Q psy15816 138 IFGTGQ 143 (171)
Q Consensus 138 ~~~~~e 143 (171)
-+.+.|
T Consensus 396 ~l~~~~ 401 (403)
T PF03209_consen 396 RLDRRE 401 (403)
T ss_pred Hhhhhc
Confidence 444443
No 209
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=80.74 E-value=4.7 Score=35.24 Aligned_cols=90 Identities=14% Similarity=0.055 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhhHHHHhh--hhccC--CcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHh
Q psy15816 19 FTLALTFNGAVTAGYLGNGLD--IAPNF--SEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS 93 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~--l~~~~--~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~ 93 (171)
+..+..||.....|.....+. +.... ..+.........+.-...+..........++..| +..|...++.|+..+
T Consensus 318 l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (495)
T PRK14995 318 LVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE 397 (495)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH
Confidence 344555566666666555432 22221 1222222222222121223332333444445455 568999999999999
Q ss_pred hhhhhhhhhhheeec
Q psy15816 94 FGGFVSSHIVGVLTD 108 (171)
Q Consensus 94 l~gii~p~i~G~iv~ 108 (171)
+++.+++.+.|.+.+
T Consensus 398 lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 398 LGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887764
No 210
>KOG1479|consensus
Probab=79.23 E-value=15 Score=32.11 Aligned_cols=76 Identities=8% Similarity=0.084 Sum_probs=47.3
Q ss_pred hhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 62 NGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 62 ~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
.+...++.+....++.++|.+-++.=.|..|.+..+..-.... ..++. ..+=..-|.++..+.++|.+.|.++.+
T Consensus 131 ~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tka-~~~~~----~~sA~~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 131 NAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTKA-AFSDS----RTSALIYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred hhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHHH-hcCCC----CceeehhHHHHHHHHHHHHHHHHHhhc
Confidence 3444556666666775589888887778888877766644333 33322 122122366677778888888886544
Q ss_pred c
Q psy15816 142 G 142 (171)
Q Consensus 142 ~ 142 (171)
.
T Consensus 206 l 206 (406)
T KOG1479|consen 206 L 206 (406)
T ss_pred c
Confidence 3
No 211
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=78.47 E-value=2.1 Score=35.14 Aligned_cols=27 Identities=22% Similarity=0.682 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816 116 RPWQYVFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 116 ~~w~~vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
.+|+.++.+.+.+.++-.+.|.++++.
T Consensus 38 ~~W~~I~si~~lL~~IpLIly~ifGk~ 64 (267)
T PF07672_consen 38 NNWQWILSIFILLIFIPLILYIIFGKN 64 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 469999999999999999999999754
No 212
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=77.18 E-value=0.18 Score=43.02 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hc---cCCc-c----hHHHHHHHHHHHHhhhhc-chhhhhhhhcccc-chHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--AP---NFSE-D----PIFAVAMFTLALTFNGAV-TAGYLGNGLDIAP-NFSGTIF 85 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~---~~~~-~----~~~av~ll~la~~~~~~~-~~g~~~~~~diap-~~ag~v~ 85 (171)
.+..+..||.....|.....+.. .. +... + ....+.+..+.....+.. .+-.|....++.| +..+...
T Consensus 308 ~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~ 387 (451)
T PF00083_consen 308 FLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGI 387 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccc
Confidence 56677888876666665555332 21 1111 2 222222222222222211 1233455567778 5678899
Q ss_pred HHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 86 GLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 86 gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
|+.+..+.+++++.|.+...+.+.. +. ..+|.+.+++.+++.++..++
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~~~~~~-----~~-~~~~~i~~~~~~i~~i~~~~~ 435 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPYLFNNL-----GG-WGVFLIFAGVCLIAIIFVYFF 435 (451)
T ss_pred ccccccccccccccccccccccccc-----cc-cccchhhHHHHHHHHhheeEE
Confidence 9999999999999999888776653 21 234555555555555443333
No 213
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=76.14 E-value=21 Score=31.19 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=41.7
Q ss_pred hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHH
Q psy15816 68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYT 130 (171)
Q Consensus 68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~ 130 (171)
.+.+...|++| +..+.+.+++-..-.++-+++.++.|.+.++. +...=..++...+.+.+
T Consensus 109 ~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~---s~~rL~~v~~~~a~i~~ 169 (403)
T PF03209_consen 109 SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF---SPERLIQVIQGVALIAL 169 (403)
T ss_pred HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc---CHHHHHHHHHHHHHHHH
Confidence 45667779887 56788888888888888899999999888874 22333334444444433
No 214
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=74.32 E-value=16 Score=32.24 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=38.4
Q ss_pred hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhhee-----ecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVL-----TDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~i-----v~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
.+...+++| +..|.++|+......++.+++..+.+.. ..+.. ...+.+...|...+++.++.++++.+
T Consensus 404 ~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 404 LAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPL-MSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccch-hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788 5689999987755555555554443311 11100 01123778888877776655544444
No 215
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=73.66 E-value=3.8 Score=27.07 Aligned_cols=47 Identities=23% Similarity=0.464 Sum_probs=26.1
Q ss_pred hhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh---eecccccCCCCCCCCcc
Q psy15816 101 HIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI---FGTGQLQPWNTPKISDD 155 (171)
Q Consensus 101 ~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~---~~~~e~q~w~~~~~~~~ 155 (171)
.+.|++.+ +.+..+++.++-.+++.++.+- +.++.+..|-+++.+++
T Consensus 25 fi~Gy~~q--------~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~~~~~~~~ 74 (76)
T PF06645_consen 25 FIVGYITQ--------SFSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWLPPKPEKE 74 (76)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHhheeCCcHhhcCCcccCCCCCcccc
Confidence 34676654 3566666544444433333211 34678888988776543
No 216
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=73.41 E-value=18 Score=32.12 Aligned_cols=56 Identities=18% Similarity=0.046 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 80 FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 80 ~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
..|.-+|+.|..-.++=++..+..|.+.+..+ ++=..+|.+.++..+++++.-.+.
T Consensus 415 ~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g----~~~~~~~~~~gv~~~~aa~~~~~~ 470 (477)
T TIGR01301 415 GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG----GGNLPAFVVGAVAAFVSGLLALIL 470 (477)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC----CCCeeHHHHHHHHHHHHHHHHHHh
Confidence 35999999999999999999988887555432 233557888888887777754443
No 217
>PF13347 MFS_2: MFS/sugar transport protein
Probab=73.41 E-value=13 Score=31.52 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhh--ccCC-cchHHHHHHHHHHHHhhhhcchhhhhhhhcccc--------chHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIA--PNFS-EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP--------NFSGTIFG 86 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~--~~~~-~~~~~av~ll~la~~~~~~~~~g~~~~~~diap--------~~ag~v~g 86 (171)
.++.+..+|.....+.....+..+ .+.+ .+.+...+...+.....+......++...|+.+ +..|..+|
T Consensus 282 ~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 282 RLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 445555556666666655554322 2222 344444443333333334333444555556543 33699999
Q ss_pred HHHHHHhhhhhhhhhhhheeec
Q psy15816 87 LANTLSSFGGFVSSHIVGVLTD 108 (171)
Q Consensus 87 i~n~~g~l~gii~p~i~G~iv~ 108 (171)
+.++...++..+++.+.|.+++
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999998887764
No 218
>KOG2533|consensus
Probab=72.89 E-value=15 Score=32.76 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=23.3
Q ss_pred ccch-HHHHHHHHHHHHhhhhhhhhhh-hheeecCCCccccCChhHHHHH
Q psy15816 77 APNF-SGTIFGLANTLSSFGGFVSSHI-VGVLTDGDKVRHFRPWQYVFMV 124 (171)
Q Consensus 77 ap~~-ag~v~gi~n~~g~l~gii~p~i-~G~iv~~~~~~~~~~w~~vF~i 124 (171)
+++. +-+..++.....+.+++++|.+ .+...+. ..|..+|+.
T Consensus 397 ~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~------y~~~~~f~~ 440 (495)
T KOG2533|consen 397 AGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR------YGWGAVFYM 440 (495)
T ss_pred cchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc------hhhhhHHHH
Confidence 4433 3334445555566666666655 5544332 478888844
No 219
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=70.55 E-value=1.7 Score=27.32 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816 116 RPWQYVFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 116 ~~w~~vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
-+||.+..+.+.+.++|+.+|.+..++
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Ypi~~~P 29 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYPIYFRP 29 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhccc
Confidence 369999999999999999999987654
No 220
>KOG3626|consensus
Probab=70.03 E-value=19 Score=33.77 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhhhcchhhhhhh---h-cccc-chHHHHHHHHHHHHhhhhhhhhhhhheee----cC-C------Cc--
Q psy15816 51 AVAMFTLALTFNGAVTAGYLGNG---L-DIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLT----DG-D------KV-- 112 (171)
Q Consensus 51 av~ll~la~~~~~~~~~g~~~~~---~-diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv----~~-~------~~-- 112 (171)
..+++.++..+.|......++.. + |-+. +....-.|+..++..++=+++=++.++.. +. . ..
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP 315 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP 315 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence 45566677777777655555433 2 3333 45566667777666666555444444333 32 0 00
Q ss_pred cccCChhHHHHHHHHHHHHHHHhhhheecccc
Q psy15816 113 RHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQL 144 (171)
Q Consensus 113 ~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~ 144 (171)
+=.|.|-.-|++.++++++.++.+.+|-+..+
T Consensus 316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 316 RWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 01246888899999999999998888855433
No 221
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=67.66 E-value=16 Score=32.47 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhh-hhcc-CC-cchHHHHHHHHHHHHhhhhcchhhhhhhhcccc--------chHHHHH
Q psy15816 17 AMFTLALTFNGAVTAGYLGNGLD-IAPN-FS-EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP--------NFSGTIF 85 (171)
Q Consensus 17 ~~l~l~~ark~~~~~G~~~~~l~-l~~~-~~-~~~~~av~ll~la~~~~~~~~~g~~~~~~diap--------~~ag~v~ 85 (171)
-.|+.+..+|-....|.+...+. +..+ .+ .+....+++.+++....+...+-.|+...|+.. |..|+.+
T Consensus 293 p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~ 372 (467)
T COG2211 293 PRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVY 372 (467)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHH
Confidence 35667777777777776666543 2222 22 345566666677767777777777887776431 2368899
Q ss_pred HHHHHHHhhhhhhhhhhhheee
Q psy15816 86 GLANTLSSFGGFVSSHIVGVLT 107 (171)
Q Consensus 86 gi~n~~g~l~gii~p~i~G~iv 107 (171)
+++.++.=++..++-.+.|++.
T Consensus 373 s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 373 SGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988777777776666655
No 222
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=66.98 E-value=19 Score=26.68 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHH--HHHHHHHHHHHHHhhhheecccccCCCCCCCCccHHHh
Q psy15816 82 GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYV--FMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDDVELA 159 (171)
Q Consensus 82 g~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~v--F~i~a~i~~~g~i~~~~~~~~e~q~w~~~~~~~~~~~~ 159 (171)
+.++.....+..+.+++.-..+.+..++ .+|... +.+++++..+-+. |+.+ ..+|+ ++.++|++|.|
T Consensus 5 a~lF~~l~~Ff~~~~~vY~~~t~~~~~~------~E~~Gt~aL~ls~~l~~mig~-yl~~-~~rr~---~~rPED~~daE 73 (137)
T PF12270_consen 5 AKLFYGLAVFFLVVAVVYGFWTKWSGDG------GEWVGTVALVLSGGLALMIGF-YLRF-TARRI---GPRPEDREDAE 73 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCC------CCcchHHHHHHHHHHHHHHHH-HHHH-HHhhC---CCCCccccccc
Confidence 4455555666666666666655544332 466544 4444444443333 2323 22333 45666777778
Q ss_pred hhhCC
Q psy15816 160 KKEAE 164 (171)
Q Consensus 160 ~~~~~ 164 (171)
++|+.
T Consensus 74 I~dgA 78 (137)
T PF12270_consen 74 IADGA 78 (137)
T ss_pred cccCC
Confidence 88854
No 223
>TIGR00901 2A0125 AmpG-related permease.
Probab=66.86 E-value=27 Score=28.51 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=19.4
Q ss_pred hhcchhhhhhhhcccc-chHHHHHHHHHHHHh
Q psy15816 63 GAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS 93 (171)
Q Consensus 63 ~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~ 93 (171)
+...+...+...+.+| ++.|..+|+.+...+
T Consensus 324 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 324 GLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3444455555666666 556888888776654
No 224
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=66.65 E-value=17 Score=31.55 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=26.5
Q ss_pred hhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816 72 NGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 72 ~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~ 109 (171)
....++|+ .=|+++++...+.|++..++-.+...+.+.
T Consensus 342 l~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~ 380 (433)
T PF03092_consen 342 LAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL 380 (433)
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467784 348888888888888887777776666543
No 225
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=65.54 E-value=70 Score=28.47 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=40.8
Q ss_pred hhhhhhhhccc--cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCcc-ccCChhHHHHHHHHHHHHHHHhhhheeccc
Q psy15816 67 AGYLGNGLDIA--PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVR-HFRPWQYVFMVLTTTYTVGAIVFLIFGTGQ 143 (171)
Q Consensus 67 ~g~~~~~~dia--p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~-~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e 143 (171)
..+++....+. |+......+.-....++++++...+.+.++..-..+ ...+|+..-.+.+++.++.. .++++...|
T Consensus 131 iPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~-l~~~~~v~E 209 (467)
T COG2211 131 IPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL-LFCFFNVKE 209 (467)
T ss_pred CchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH-HHHHHHhhc
Confidence 44454444333 556677888877777777666555544444322100 12356555444444433332 345555566
Q ss_pred ccC
Q psy15816 144 LQP 146 (171)
Q Consensus 144 ~q~ 146 (171)
|..
T Consensus 210 R~~ 212 (467)
T COG2211 210 RVV 212 (467)
T ss_pred ccC
Confidence 655
No 226
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=61.90 E-value=25 Score=26.53 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhHHHH---hhhhccC------Cc---chHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNG---LDIAPNF------SE---DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIF 85 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~---l~l~~~~------~~---~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~ 85 (171)
..+-++.|+....+|.-... ++.+.|+ .. -..+++.+++.+.+++|..| |+.+..-| |+.-|...
T Consensus 56 ~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisY-GilSaSWD--~~r~GSll 132 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISY-GILSASWD--PEREGSLL 132 (153)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhh-hhcccccC--CCCCCCcc
Confidence 34567777777766642221 1111121 11 12234444444555555555 33455555 55458888
Q ss_pred HHHHHHHhhhhh
Q psy15816 86 GLANTLSSFGGF 97 (171)
Q Consensus 86 gi~n~~g~l~gi 97 (171)
|+-++--|++-+
T Consensus 133 G~~e~~~N~~r~ 144 (153)
T PF11947_consen 133 GWEEFKRNWGRM 144 (153)
T ss_pred cHHHHHHhHHHH
Confidence 888877777643
No 227
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=61.72 E-value=16 Score=32.00 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCC
Q psy15816 49 IFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110 (171)
Q Consensus 49 ~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~ 110 (171)
..++..+.+.-.+.+...+...+...+.-|++ ....|..-..+.++|.+-|.+-|++.|+.
T Consensus 325 ~v~~~~l~~ig~F~simfPTIfslal~~l~~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~ 385 (422)
T COG0738 325 VVALYALFLIGLFNSIMFPTIFSLALKNLGEH-TSVGSGLLVMAIVGGAIIPPLQGVIADMF 385 (422)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcc-ccccceeeeeheecchHHHHHHHHHHHhh
Confidence 33333333333344444455556666655666 44445556678899999999999998874
No 228
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=60.77 E-value=91 Score=25.42 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=12.4
Q ss_pred hHHHHHHH-HHHHHHHHhhhheecccc
Q psy15816 119 QYVFMVLT-TTYTVGAIVFLIFGTGQL 144 (171)
Q Consensus 119 ~~vF~i~a-~i~~~g~i~~~~~~~~e~ 144 (171)
+...-..+ ++.+++.++|.+. +.+.
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fi-k~~~ 139 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFI-KSEE 139 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeee-cCCC
Confidence 34444444 4455666666544 4433
No 229
>KOG1330|consensus
Probab=60.12 E-value=30 Score=30.94 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=23.4
Q ss_pred ccchHHHHHHHHHHHHhhhh-hhhhhhhheeecC
Q psy15816 77 APNFSGTIFGLANTLSSFGG-FVSSHIVGVLTDG 109 (171)
Q Consensus 77 ap~~ag~v~gi~n~~g~l~g-ii~p~i~G~iv~~ 109 (171)
.|+...++..+.-.+..+.| +-+|.++|.+.++
T Consensus 379 ~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 379 PPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred CcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 35677788887777766665 4455589998875
No 230
>KOG4112|consensus
Probab=59.85 E-value=23 Score=24.50 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=34.9
Q ss_pred hhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh---hhheecccccCC
Q psy15816 71 GNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV---FLIFGTGQLQPW 147 (171)
Q Consensus 71 ~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~---~~~~~~~e~q~w 147 (171)
..++|...+ +..==..+.+-.++++++- +.|+.++.- +|. ++.+.++..+.+.+. |-++ ++.+-.|
T Consensus 13 ~~~iDf~gQ--kkaEr~~q~ilti~aiVg~-i~Gf~~Qql------s~t-vy~vg~~~v~t~li~LPpwP~y-~rn~LkW 81 (101)
T KOG4112|consen 13 VFPIDFPGQ--KKAERFQQLILTIGAIVGF-IYGFAQQQL------SVT-VYIVGAGFVFTLLITLPPWPWY-RRNPLKW 81 (101)
T ss_pred CCcccCcch--HHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHH-HHHHHHHHHHHHHhcCCCchhh-hcCcccc
Confidence 345665322 2222233444445554443 345555542 232 344444433333322 3333 4588899
Q ss_pred CCCCCCccH
Q psy15816 148 NTPKISDDV 156 (171)
Q Consensus 148 ~~~~~~~~~ 156 (171)
.+|.++++.
T Consensus 82 ~~Pa~esss 90 (101)
T KOG4112|consen 82 AQPAIESSS 90 (101)
T ss_pred cCCcccccc
Confidence 987555433
No 231
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=59.24 E-value=3.1 Score=34.36 Aligned_cols=71 Identities=8% Similarity=0.098 Sum_probs=0.0
Q ss_pred chhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 66 TAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 66 ~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
.++.+.......|+|.+.++.=.+..|.+..++.- ++-...++. ..+-..=|.+..++.+++.+.|..+.+
T Consensus 15 q~s~~glas~~p~~y~~a~~~Gq~~aGv~~s~l~i-i~~~~~~~~----~~~a~~yF~~a~~i~i~~~~~~~~l~~ 85 (309)
T PF01733_consen 15 QSSLFGLASLFPPKYTQAVMIGQGLAGVIVSLLRI-ITKASGSDV----KTSAFIYFIIAVLIVILCIILYFILPR 85 (309)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred hccHHHHHhcCCHHHHHHHHhhccHHHHHHHHHHH-HHHHhhhcc----chhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555556457766554444444433332222 111111111 122222255566667777777776644
No 232
>KOG3764|consensus
Probab=58.01 E-value=47 Score=29.39 Aligned_cols=52 Identities=15% Similarity=0.353 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 82 GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 82 g~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
|.|.++.....+++-.++|.+.|.+++. -+|++.-.+.++.+++-+-+...+
T Consensus 402 GsVyaIad~a~sla~a~GP~~gg~iv~~------iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 402 GSVYAIADAAFSLAYAIGPTFGGSLVEA------IGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred eeHHHHHHHHHHHhhhccccccchheee------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999987 357777666677766555544443
No 233
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=57.21 E-value=1.2e+02 Score=26.71 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816 81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV 135 (171)
Q Consensus 81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~ 135 (171)
-......+.-+=.+.-+++|+++|.+... .+......+.++.++++.++
T Consensus 147 La~~NA~mRRIDL~ckllaPl~vG~l~t~------~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 147 LARMNATMRRIDLFCKLLAPLFVGLLMTF------ASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cCHHHHHHHHHHHHHHHHHH
Confidence 45567788888889999999999998775 34566666666666666554
No 234
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=56.67 E-value=13 Score=25.79 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=23.6
Q ss_pred CChhHHHHHHHHHHHHHHHhhhheecccccCCCCC
Q psy15816 116 RPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTP 150 (171)
Q Consensus 116 ~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~ 150 (171)
-+|-.+|.+.+.+.+....+..--..++...|-..
T Consensus 50 lQWIFAFvI~avlfv~sl~vav~~~~~r~~~~r~~ 84 (97)
T PF08611_consen 50 LQWIFAFVIAAVLFVLSLVVAVPKWTGRDAFFRRE 84 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhcc
Confidence 36888888888888877776655555555555433
No 235
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=56.07 E-value=17 Score=23.56 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhhheecccccCCC
Q psy15816 121 VFMVLTTTYTVGAIVFLIFGTGQLQPWN 148 (171)
Q Consensus 121 vF~i~a~i~~~g~i~~~~~~~~e~q~w~ 148 (171)
..++..++.+++.++|-+.-+.+..+-+
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~~~q~~ 32 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKKTTQNT 32 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCC
Confidence 3455667888999999998665444433
No 236
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=55.68 E-value=3.8 Score=36.85 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=2.4
Q ss_pred HHHHHHHHHHhhhhcchhhhhhhh----c-cccchHHHHHHHHHHHHhhhhhhhhhhhheee----cCCCcc--------
Q psy15816 51 AVAMFTLALTFNGAVTAGYLGNGL----D-IAPNFSGTIFGLANTLSSFGGFVSSHIVGVLT----DGDKVR-------- 113 (171)
Q Consensus 51 av~ll~la~~~~~~~~~g~~~~~~----d-iap~~ag~v~gi~n~~g~l~gii~p~i~G~iv----~~~~~~-------- 113 (171)
...++.++..+.|.....+|+... | +.|+.++.-.|+......++-.++=++.|... +....+
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p 219 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP 219 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC
Confidence 356677778888887777776443 3 33456677777777777666655545544444 211100
Q ss_pred -c---cCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816 114 -H---FRPWQYVFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 114 -~---~~~w~~vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
+ .|.|=..|.+.+.+.++.++-+..|-|.
T Consensus 220 ~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 220 SDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp ---------------------------------
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 0 2457677888888888888877776443
No 237
>KOG3762|consensus
Probab=55.13 E-value=30 Score=31.69 Aligned_cols=118 Identities=16% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHH----HHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccc-hHHHHHHH
Q psy15816 14 FAVAMFTLALTFNGAV----TAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN-FSGTIFGL 87 (171)
Q Consensus 14 ~~~~~l~l~~ark~~~----~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~-~ag~v~gi 87 (171)
+-..+++-++-+|.-. ..|+.++..-++.+ +-.|+|..+.+=.+-....+.......+...+.+|. -..++.|+
T Consensus 420 I~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l 499 (618)
T KOG3762|consen 420 ILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGL 499 (618)
T ss_pred HHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHH
Confidence 3444566666666542 34444444432222 235677666555555555554444444455577774 35777777
Q ss_pred HHHHH-hhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816 88 ANTLS-SFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL 137 (171)
Q Consensus 88 ~n~~g-~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~ 137 (171)
.+... .++=-++.++.|.+++.- +=+..|.+.++..++..+.+.
T Consensus 500 ~~g~f~GlG~g~GslIGG~~v~~f------g~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 500 LQGIFHGLGKGLGSLIGGFVVERF------GARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHhcccCcchhhhhhhhhheee------hhHHHHHHHHHHHHHHHHHHH
Confidence 76653 333344555666666543 223456665554444443333
No 238
>KOG2563|consensus
Probab=54.85 E-value=26 Score=31.15 Aligned_cols=52 Identities=21% Similarity=0.455 Sum_probs=39.0
Q ss_pred ccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHH
Q psy15816 76 IAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVG 132 (171)
Q Consensus 76 iap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g 132 (171)
+-| .|.|...|.......++|.++.++.|.++|.+ .+|+..-.+.....+++
T Consensus 293 l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-----k~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 293 LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-----KKFKLTTLVLYLFALVG 345 (480)
T ss_pred cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHHHH
Confidence 445 36778889999999999999999999999986 46777655554444444
No 239
>KOG2615|consensus
Probab=54.42 E-value=69 Score=28.24 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=33.0
Q ss_pred hhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCC
Q psy15816 71 GNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110 (171)
Q Consensus 71 ~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~ 110 (171)
.......| +..|++.|+....+.++=+++|.+.|.+....
T Consensus 375 ~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 375 SLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 33344556 56899999999999999999999999998764
No 240
>KOG2816|consensus
Probab=54.06 E-value=34 Score=30.25 Aligned_cols=90 Identities=16% Similarity=0.246 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhc-cccchHHHHHHHHHHHHhh
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLD-IAPNFSGTIFGLANTLSSF 94 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~d-iap~~ag~v~gi~n~~g~l 94 (171)
++.....-+..+..|.....+.. ..+. ...+. +..-.+-..+.....++..+.... ..++..|.++++...+-.+
T Consensus 300 ~l~~~l~~~~~i~lGl~~~~~~~~~~af~-~~~w~-~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l 377 (463)
T KOG2816|consen 300 LLSSILGEKRLISLGLLSEFLQLLLFAFA-TETWM-MFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGL 377 (463)
T ss_pred HHHHHHhhhhHhhHHHHHHHHHHHHHHHh-ccchh-hhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHH
Confidence 44445555556667776665433 2221 22111 111111122222222333333322 3355569999999999999
Q ss_pred hhhhhhhhhheeecC
Q psy15816 95 GGFVSSHIVGVLTDG 109 (171)
Q Consensus 95 ~gii~p~i~G~iv~~ 109 (171)
+++++|.+-+.+...
T Consensus 378 ~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 378 SGVVSPALYGNIFAL 392 (463)
T ss_pred hhhhhHHHHHHHHHH
Confidence 999999997766543
No 241
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=53.48 E-value=4.8 Score=28.23 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=25.6
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhhee-cccccCCCCCCC
Q psy15816 115 FRPWQYVFMVLTTTYTVGAIVFLIFG-TGQLQPWNTPKI 152 (171)
Q Consensus 115 ~~~w~~vF~i~a~i~~~g~i~~~~~~-~~e~q~w~~~~~ 152 (171)
...|..+|++...+.++...+++.+. +...++|+..+-
T Consensus 56 ~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~rEA 94 (105)
T PF10183_consen 56 WEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWARREA 94 (105)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45799999886666655555555554 667788876543
No 242
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=51.61 E-value=24 Score=30.90 Aligned_cols=74 Identities=5% Similarity=0.058 Sum_probs=37.3
Q ss_pred hhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHH--HHHHHHHHHHHHHhhhhee
Q psy15816 63 GAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYV--FMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 63 ~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~v--F~i~a~i~~~g~i~~~~~~ 140 (171)
++..++.........|+|.+.++.=.+..|.++.++.-+.... .+++. ...++.. |.++.++.+++.+.|..+.
T Consensus 121 ~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~~ii~~a~-~~~~~---~~~~~a~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 121 ALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLAMILVKAS-GNDSH---GLKKSALGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred hhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHHHHHHHHh-cCCcc---chhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3334454555545545776666555555555555543333322 22210 0122222 5566777778887777654
No 243
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=51.46 E-value=13 Score=31.42 Aligned_cols=22 Identities=9% Similarity=0.458 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhe
Q psy15816 118 WQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 118 w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
.++.+.++.++.++|-++|..-
T Consensus 285 ~~~ly~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 285 FSWLYILAFALIIIGFVVYNLA 306 (334)
T ss_pred ccHHHHHHHHHHHHHhheEEcc
Confidence 3444444444555555555543
No 244
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=48.59 E-value=39 Score=22.89 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhe
Q psy15816 119 QYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 119 ~~vF~i~a~i~~~g~i~~~~~ 139 (171)
|+.+++.|++.++|.+.-++.
T Consensus 23 RYGLf~GAIFQliCilAiI~~ 43 (85)
T PF06783_consen 23 RYGLFVGAIFQLICILAIILP 43 (85)
T ss_pred HHHHHHHHHHHHHHHHheeee
Confidence 445666777777766654443
No 245
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=44.91 E-value=1.9e+02 Score=24.42 Aligned_cols=30 Identities=23% Similarity=-0.010 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhheeecCC
Q psy15816 81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110 (171)
Q Consensus 81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~ 110 (171)
.|.+.++.++........++...|++.++.
T Consensus 345 ~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~ 374 (413)
T PRK15403 345 KGTVSASLNMVILMVMAVSVEIGRWLWFNG 374 (413)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 599999999999888888888888886653
No 246
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=44.71 E-value=79 Score=26.90 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=21.4
Q ss_pred HHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 90 TLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 90 ~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
..+.++-.++|.+.|.+ ... ..|. .|++.+++.++..+
T Consensus 137 ~~G~lG~~ig~~l~g~l-~~~-----~~~~-~f~~~~~~~~~~~~ 174 (418)
T TIGR00889 137 VMGTIGFIAAMWAVSLL-DIE-----LSNI-QLYITAGSSALLGV 174 (418)
T ss_pred eehhHHHHHHHHHHHHh-ccc-----chhH-HHHHHHHHHHHHHH
Confidence 33346677788888866 221 3454 45565555555444
No 247
>PTZ00370 STEVOR; Provisional
Probab=44.18 E-value=58 Score=27.13 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHHHHHHHhhhheecccccCCC
Q psy15816 117 PWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWN 148 (171)
Q Consensus 117 ~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~ 148 (171)
.|..+-++.-++.++-.+.|+++.+++.-+|-
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrRK~swk 287 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRRKNSWK 287 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 44444444444555556778888888888884
No 248
>PRK11462 putative transporter; Provisional
Probab=43.96 E-value=2.1e+02 Score=24.71 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhheee
Q psy15816 81 SGTIFGLANTLSSFGGFVSSHIVGVLT 107 (171)
Q Consensus 81 ag~v~gi~n~~g~l~gii~p~i~G~iv 107 (171)
.|..++...+...++..+++.+.|.+.
T Consensus 359 ~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 359 TGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467677767777777766666655554
No 249
>KOG2325|consensus
Probab=43.13 E-value=2.4e+02 Score=25.32 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=19.0
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhheecccccC
Q psy15816 115 FRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQP 146 (171)
Q Consensus 115 ~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~ 146 (171)
.+.|+..=++.+.+.++..+...++.+.++.+
T Consensus 204 ~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 204 FNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred EEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 34566677777777776666555554443333
No 250
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=42.84 E-value=27 Score=25.64 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=28.2
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhee----cccccCCCCCCCCccHHHhhhh-CCCccccC
Q psy15816 116 RPWQYVFMVLTTTYTVGAIVFLIFG----TGQLQPWNTPKISDDVELAKKE-AEPLKKIS 170 (171)
Q Consensus 116 ~~w~~vF~i~a~i~~~g~i~~~~~~----~~e~q~w~~~~~~~~~~~~~~~-~~~~~~~~ 170 (171)
++|..+|....+...++.++|.+.. ...+...+++-++...|-.+++ .||+.-.+
T Consensus 72 ~ewk~v~~~~~~~i~~s~~~~~~~r~~~~~~~P~T~t~Ewqea~~er~~~~~~NPitG~s 131 (136)
T cd00922 72 GEWKTVFGGVLAFIGITGVIFGLQRAFVYGPKPHTFTEEWQEAQLERMLDMKVNPITGYA 131 (136)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhCCCCCcccc
Confidence 5899998776665555555555532 2333333333223223332333 77876433
No 251
>KOG3626|consensus
Probab=41.53 E-value=78 Score=29.88 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=30.1
Q ss_pred hhhhhhhhccccchHHHHHHHHHHH-HhhhhhhhhhhhheeecC
Q psy15816 67 AGYLGNGLDIAPNFSGTIFGLANTL-SSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 67 ~g~~~~~~diap~~ag~v~gi~n~~-g~l~gii~p~i~G~iv~~ 109 (171)
+++.....-+-|+......|+..++ ..+|++=+|++-|+++|.
T Consensus 606 p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 606 PGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred cceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 4444444456567778888888776 455667799999999963
No 252
>PHA03049 IMV membrane protein; Provisional
Probab=41.49 E-value=39 Score=21.81 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhheecccccCCCCC
Q psy15816 121 VFMVLTTTYTVGAIVFLIFGTGQLQPWNTP 150 (171)
Q Consensus 121 vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~ 150 (171)
.+++..++.++|.++|-+.-+...++-+.+
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk~~~q~~~p 34 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKKTTTSQNPP 34 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCC
Confidence 455667788899999999876655554443
No 253
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=41.28 E-value=22 Score=24.97 Aligned_cols=50 Identities=28% Similarity=0.565 Sum_probs=21.9
Q ss_pred ChhHHHHHHHHHHHHHHHhhhheecccccCCCCCCCCccHHHhhhhCCCccc
Q psy15816 117 PWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDDVELAKKEAEPLKK 168 (171)
Q Consensus 117 ~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~~~~~~~~~~~~~~~~~~~ 168 (171)
.| ..+.+.++++++.+.+....+++..+....+-++..+|. ++|.+-++|
T Consensus 71 ~~-~a~liv~~~~l~la~i~~~~~~~~l~~~~~~~~~t~~~l-~~d~~~lk~ 120 (121)
T PF07332_consen 71 PW-LAFLIVAGLYLLLALILLLIGRRRLRRAPPPFEETIAEL-KEDIAALKE 120 (121)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHhhc
Confidence 35 455555555554444444444443333222222333333 444444443
No 254
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=39.63 E-value=2.1e+02 Score=24.93 Aligned_cols=26 Identities=4% Similarity=0.085 Sum_probs=12.0
Q ss_pred ChhHHHHHHHHHHHHHH-Hhhhheecc
Q psy15816 117 PWQYVFMVLTTTYTVGA-IVFLIFGTG 142 (171)
Q Consensus 117 ~w~~vF~i~a~i~~~g~-i~~~~~~~~ 142 (171)
+-|..+.+...+-++-. ..|.++.++
T Consensus 172 s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 172 SPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34556666555443333 334444433
No 255
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=39.53 E-value=8.5 Score=22.83 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=9.5
Q ss_pred CCCCCCCccHHHhhhhC
Q psy15816 147 WNTPKISDDVELAKKEA 163 (171)
Q Consensus 147 w~~~~~~~~~~~~~~~~ 163 (171)
|-+.++++.+|.|.+|.
T Consensus 31 qIrgKkk~KKeie~ke~ 47 (49)
T PF11044_consen 31 QIRGKKKEKKEIERKED 47 (49)
T ss_pred HHHhhhhhHHHHHHHhh
Confidence 34455556666666553
No 256
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=38.43 E-value=1.6e+02 Score=25.23 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q psy15816 120 YVFMVLTTTYT 130 (171)
Q Consensus 120 ~vF~i~a~i~~ 130 (171)
..+++.+.+.+
T Consensus 160 ~~~~i~~~~~~ 170 (400)
T PF03825_consen 160 LIFYIAAILSL 170 (400)
T ss_pred HHHHHHHHHHH
Confidence 35555554443
No 257
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=37.15 E-value=1.8e+02 Score=26.34 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=32.7
Q ss_pred hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816 68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG 109 (171)
Q Consensus 68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~ 109 (171)
-+|.-..++.. +++..-.+..+..+|++.+++..++.++-++
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45665555544 6678888999999999999999998888664
No 258
>PTZ00207 hypothetical protein; Provisional
Probab=36.34 E-value=57 Score=29.88 Aligned_cols=67 Identities=7% Similarity=-0.093 Sum_probs=44.4
Q ss_pred hccccchHHHHHHHHHHHHhhhhhhh-hhhhheeecCCCccc-----cC--ChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 74 LDIAPNFSGTIFGLANTLSSFGGFVS-SHIVGVLTDGDKVRH-----FR--PWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 74 ~diap~~ag~v~gi~n~~g~l~gii~-p~i~G~iv~~~~~~~-----~~--~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
.++-.++-|+..-+.....-++.++. -.+.|++-|++..+. .| =++..|.+.+++.++|.+.-.++.
T Consensus 478 selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 478 RTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred HHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 34434666888777777777777666 445777765432111 11 288899999999999988866654
No 259
>KOG0569|consensus
Probab=35.88 E-value=2.3e+02 Score=25.38 Aligned_cols=23 Identities=4% Similarity=-0.152 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhh
Q psy15816 17 AMFTLALTFNGAVTAGYLGNGLD 39 (171)
Q Consensus 17 ~~l~l~~ark~~~~~G~~~~~l~ 39 (171)
.++.-+..||-....+..+..+.
T Consensus 326 ~~lid~~gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 326 PFLIDRLGRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHH
Confidence 35666778888887777766643
No 260
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.21 E-value=1.5e+02 Score=21.20 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHH
Q psy15816 80 FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYV 121 (171)
Q Consensus 80 ~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~v 121 (171)
..+...++.-..-.++|++.-...||++++.. ....|..+
T Consensus 39 ~k~~~~a~klssefIsGilVGa~iG~llD~~a--gTsPwglI 78 (116)
T COG5336 39 IKGYAQAFKLSSEFISGILVGAGIGWLLDKFA--GTSPWGLI 78 (116)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHHH
Confidence 34556666666667777777777888888743 12457644
No 261
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=31.75 E-value=60 Score=28.38 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 82 GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 82 g~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
+.=+|=....|+++..++..++|++...+ =+..|++..+..++-.+
T Consensus 137 ~feYG~~R~wGSig~ai~s~~~G~L~~i~-------p~~~fwi~s~~~~il~l 182 (412)
T PF01306_consen 137 GFEYGRARMWGSIGFAIASLLAGILFNIN-------PNIIFWIASAAAIILLL 182 (412)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHhhHHHHHHHHHhheeeeeC-------ccHHHHHHHHHHHHHHH
Confidence 56688899999999999999999987653 24567765554443333
No 262
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=31.59 E-value=82 Score=20.13 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=15.2
Q ss_pred CCCccHHHhhhhCCCccccC
Q psy15816 151 KISDDVELAKKEAEPLKKIS 170 (171)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ 170 (171)
+..-+.|+=.++++++||++
T Consensus 42 ~~t~HPELLD~~G~~i~EeL 61 (65)
T PF11189_consen 42 KVTIHPELLDENGNIINEEL 61 (65)
T ss_pred CCCCCcccCCCCcCCcCCce
Confidence 44467777788899999975
No 263
>KOG2563|consensus
Probab=30.98 E-value=40 Score=30.05 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=28.5
Q ss_pred cccchHHHHHHHHHHHHhhhhhhhhhhhheeecCC
Q psy15816 76 IAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110 (171)
Q Consensus 76 iap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~ 110 (171)
.-|..=|+-.|+.|..+++-+++.+.+.+...+..
T Consensus 388 TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~ 422 (480)
T KOG2563|consen 388 TYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL 422 (480)
T ss_pred ccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence 33633388899999999999999999999887763
No 264
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=30.73 E-value=43 Score=26.06 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=20.3
Q ss_pred ChhHHHHHHHHHHHHHHHhhhheecccc
Q psy15816 117 PWQYVFMVLTTTYTVGAIVFLIFGTGQL 144 (171)
Q Consensus 117 ~w~~vF~i~a~i~~~g~i~~~~~~~~e~ 144 (171)
+|-..|.+.+.+++++.+--..+.++|+
T Consensus 142 ~y~l~fe~~silLLvAmIGAI~La~~~~ 169 (198)
T PRK06638 142 DYLLPFELASVLLLVAMVGAIVLARRER 169 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4777788888888877777666665543
No 265
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=29.49 E-value=53 Score=26.97 Aligned_cols=7 Identities=43% Similarity=0.487 Sum_probs=4.2
Q ss_pred CCCcccc
Q psy15816 163 AEPLKKI 169 (171)
Q Consensus 163 ~~~~~~~ 169 (171)
.+|.|++
T Consensus 248 ~~~~~~~ 254 (263)
T PRK14780 248 NEPSNKP 254 (263)
T ss_pred cCcccCC
Confidence 5666654
No 266
>KOG4255|consensus
Probab=28.75 E-value=73 Score=27.56 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhheecccccCCCC--CCC--------CccHHHhhhhCCCccccCC
Q psy15816 122 FMVLTTTYTVGAIVFLIFGTGQLQPWNT--PKI--------SDDVELAKKEAEPLKKISS 171 (171)
Q Consensus 122 F~i~a~i~~~g~i~~~~~~~~e~q~w~~--~~~--------~~~~~~~~~~~~~~~~~~~ 171 (171)
|++...+...+...|..+.+ ....|.. +++ ....|+|.||+.|.+|++|
T Consensus 193 Fl~l~~~~~~alaAF~vL~r-~~~~~~~s~~~~~~p~~~l~si~~~ee~~~~~~~~~dsS 251 (439)
T KOG4255|consen 193 FLALFAFTCAALAAFFVLYR-LGAHWPSSTTGELEPQLQLGSIGAEEETDESSPLQEDSS 251 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCCCCCCccccCCCCcccccccCCCCCCCcc
Confidence 55555555555555655532 2344431 111 1223444557888887765
No 267
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=27.72 E-value=89 Score=21.77 Aligned_cols=43 Identities=19% Similarity=0.421 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHh---hhheecccccCCCCCCCCccHHHhh
Q psy15816 118 WQYVFMVLTTTYTVGAIV---FLIFGTGQLQPWNTPKISDDVELAK 160 (171)
Q Consensus 118 w~~vF~i~a~i~~~g~i~---~~~~~~~e~q~w~~~~~~~~~~~~~ 160 (171)
+..+.++.+.++++|-.+ +..|++.---+|++|-+..+++.|+
T Consensus 4 ~~~vl~l~g~llligftivvl~vyfgrk~ylswakpykrahesiek 49 (126)
T PF13120_consen 4 IKMVLLLIGTLLLIGFTIVVLLVYFGRKFYLSWAKPYKRAHESIEK 49 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheecceeeeeecChhhHHHhHHHH
Confidence 345666667666666432 3447888889999987665555543
No 268
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=27.53 E-value=27 Score=30.84 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=17.1
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhe-ecccccC
Q psy15816 116 RPWQYVFMVLTTTYTVGAIVFLIF-GTGQLQP 146 (171)
Q Consensus 116 ~~w~~vF~i~a~i~~~g~i~~~~~-~~~e~q~ 146 (171)
++|+.+.+-. +..+++.++|+=| .-.|+|.
T Consensus 404 g~~~~~ilq~-v~lvi~~lIY~PFvK~~dk~~ 434 (452)
T PRK10297 404 GSVAALLVAL-FNLGIATLIYLPFVVVANKAQ 434 (452)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 6899876654 3444555555554 4444444
No 269
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=26.48 E-value=76 Score=19.26 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy15816 122 FMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 122 F~i~a~i~~~g~i~~~~ 138 (171)
|.+..++.+.+.+...+
T Consensus 4 ~~iV~i~iv~~lLg~~I 20 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSI 20 (50)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 270
>COG2056 Predicted permease [General function prediction only]
Probab=26.36 E-value=78 Score=27.53 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhhheecccccCCCCCCC
Q psy15816 120 YVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKI 152 (171)
Q Consensus 120 ~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~~~ 152 (171)
.+.++.+.-+++|.++-.+..-+|+.++...+.
T Consensus 192 ~am~ip~lgMi~GLl~ai~~~YrKpReY~~~~~ 224 (444)
T COG2056 192 KAMWIPGLGMIVGLLLAIFVSYRKPREYQTNEI 224 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccccccc
Confidence 346667777777777766664455555544333
No 271
>PF15050 SCIMP: SCIMP protein
Probab=26.21 E-value=61 Score=23.51 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=14.2
Q ss_pred HHHHHhhhhee--cccccCC--CCCCCCccHHHhh
Q psy15816 130 TVGAIVFLIFG--TGQLQPW--NTPKISDDVELAK 160 (171)
Q Consensus 130 ~~g~i~~~~~~--~~e~q~w--~~~~~~~~~~~~~ 160 (171)
.+|.++|++.. .++-+.| +++-+++.++.|+
T Consensus 22 ~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEk 56 (133)
T PF15050_consen 22 VLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEK 56 (133)
T ss_pred HHHHHHHHHHHHHHHccccceeccchhhhcccHHH
Confidence 35666776542 2233445 4444443344433
No 272
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=24.32 E-value=5.4e+02 Score=23.31 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy15816 13 IFAVAMFTLALTFNG 27 (171)
Q Consensus 13 ~~~~~~l~l~~ark~ 27 (171)
.+.++++...++.|.
T Consensus 93 ~vlv~mlgvgvae~s 107 (508)
T PRK11339 93 AILALVLGAGLAERV 107 (508)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445556666666655
No 273
>KOG1288|consensus
Probab=24.17 E-value=3.3e+02 Score=26.06 Aligned_cols=93 Identities=25% Similarity=0.355 Sum_probs=47.0
Q ss_pred eeecCchHHHHHHHHHHHHHHHHHHHh---hHHHHhhh-hccCCcchHHHHHHHHH-HHHhhhhcc--hhhhhhhhcccc
Q psy15816 6 IYTGEDPIFAVAMFTLALTFNGAVTAG---YLGNGLDI-APNFSEDPIFAVAMFTL-ALTFNGAVT--AGYLGNGLDIAP 78 (171)
Q Consensus 6 ~~~~~~~~~~~~~l~l~~ark~~~~~G---~~~~~l~l-~~~~~~~~~~av~ll~l-a~~~~~~~~--~g~~~~~~diap 78 (171)
+|-|+-.-.|+.+++..+-.|.--++| ++...+.+ ++|. .. ....+++ +....|.+- +.|+.....+.|
T Consensus 69 Tf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~-I~---llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 69 TFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYA-IL---LLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred ceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHH-HH---HHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 455554346777776655544434344 44333332 2331 11 1111122 233344442 345667778888
Q ss_pred ch---HHHHHHHHHH---HHhhhhhhhhhh
Q psy15816 79 NF---SGTIFGLANT---LSSFGGFVSSHI 102 (171)
Q Consensus 79 ~~---ag~v~gi~n~---~g~l~gii~p~i 102 (171)
++ .|.++-+.|. .-++.|++-|++
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il 174 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPIL 174 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHH
Confidence 86 3555554444 456778888887
No 274
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=23.88 E-value=2.7e+02 Score=21.10 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHH-HHHHHHHHhhhheecccccCC
Q psy15816 84 IFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLT-TTYTVGAIVFLIFGTGQLQPW 147 (171)
Q Consensus 84 v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a-~i~~~g~i~~~~~~~~e~q~w 147 (171)
..|..-.++.++|.+.-++..|+.++.+ ....|..+=.+.- ++.+++.++ +.+++..+.+|
T Consensus 104 Figf~l~fggl~~s~~vli~~yv~~~~~--~~~~~~Gva~vlqN~lI~~Sslv-l~~~r~~ed~y 165 (166)
T PF05255_consen 104 FIGFALSFGGLAGSVWVLILKYVVPQYT--KPTLWPGVANVLQNALIFLSSLV-LWFGRNTEDEY 165 (166)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCC--CCCcccccHHHHHHHHHHHHHHH-HHhcccccccC
Confidence 4677777777777777777888887411 2245665544333 333344443 44555444455
No 275
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=23.86 E-value=2.7e+02 Score=24.67 Aligned_cols=93 Identities=12% Similarity=-0.006 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHHhhhhcchhhhhhhhccccc-hHHHHHHHHHHHHhhhhhhhhhh----------hheeec---CCCc
Q psy15816 47 DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHI----------VGVLTD---GDKV 112 (171)
Q Consensus 47 ~~~~av~ll~la~~~~~~~~~g~~~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i----------~G~iv~---~~~~ 112 (171)
..+..+.++.++.....+...-+.+...|+.++ ..+.++++.-..+.+++.+.-++ ++..+- .++.
T Consensus 114 ~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~ 193 (438)
T COG2270 114 YLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPA 193 (438)
T ss_pred hHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcc
Confidence 445667777777777677666667777777664 45666666555555555554444 222221 0000
Q ss_pred cccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 113 RHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 113 ~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
+...=|.++.++++-.++..+=.++..
T Consensus 194 -~~~~~ri~~~l~A~W~li~~iPm~~~v 220 (438)
T COG2270 194 -DGEDVRITGLLAALWWLLFALPMILNV 220 (438)
T ss_pred -ccccchhHHHHHHHHHHHHHhHHHhcc
Confidence 113457788888888777776655543
No 276
>PRK03612 spermidine synthase; Provisional
Probab=22.52 E-value=2e+02 Score=25.83 Aligned_cols=27 Identities=15% Similarity=0.098 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhheeec
Q psy15816 82 GTIFGLANTLSSFGGFVSSHIVGVLTD 108 (171)
Q Consensus 82 g~v~gi~n~~g~l~gii~p~i~G~iv~ 108 (171)
|...|-.-+...+|++++.+++|++.-
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 444455555556666666666665553
No 277
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.26 E-value=65 Score=23.31 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=10.0
Q ss_pred HHHHHH-HHHHHHHhhhheecccccCC
Q psy15816 122 FMVLTT-TYTVGAIVFLIFGTGQLQPW 147 (171)
Q Consensus 122 F~i~a~-i~~~g~i~~~~~~~~e~q~w 147 (171)
|.+.++ +.++..+.|++..+.|+++-
T Consensus 71 ~gv~aGvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 443333 34444455555555555443
No 278
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.75 E-value=2.7e+02 Score=20.79 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=12.0
Q ss_pred ccccCCCCCCCCccH--HHhhhhCCCcc
Q psy15816 142 GQLQPWNTPKISDDV--ELAKKEAEPLK 167 (171)
Q Consensus 142 ~e~q~w~~~~~~~~~--~~~~~~~~~~~ 167 (171)
....+|.+...++.+ ..+++|++|.+
T Consensus 98 ~g~~~~~~~~~D~l~~~~~~~~~~~~~~ 125 (145)
T PRK12586 98 NGAYMYRKNDAHTHASILLSSNEQNSTE 125 (145)
T ss_pred cCCCCCCCcchHHHHHHhhhhhhcCCHH
Confidence 445667665433322 23333455544
No 279
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.11 E-value=3.9e+02 Score=22.34 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHHHHHHHhhhheecccccCCC
Q psy15816 117 PWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWN 148 (171)
Q Consensus 117 ~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~ 148 (171)
.|..+-++.-++.++-.+.|+++.+++.-+|-
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 34444444444555556778888888888884
No 280
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.43 E-value=57 Score=22.18 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816 116 RPWQYVFMVLTTTYTVGAIVFLIFGTG 142 (171)
Q Consensus 116 ~~w~~vF~i~a~i~~~g~i~~~~~~~~ 142 (171)
+-|...|+..+.+++.|..+-+.-.++
T Consensus 41 D~w~KGy~~MG~lfltgSt~tL~K~~r 67 (95)
T COG4298 41 DLWTKGYWAMGILFLTGSTVTLVKYRR 67 (95)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHhh
Confidence 468889999999999998876654433
No 281
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=20.05 E-value=97 Score=25.97 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccc
Q psy15816 85 FGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQL 144 (171)
Q Consensus 85 ~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~ 144 (171)
.......+|.+-+-.|++....-++. ..+-..+.+...+.......+++-.+.++
T Consensus 97 ~~~~~~~~N~~~lglpi~~~l~g~~~-----~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 151 (385)
T PF03547_consen 97 FVLAASFGNTGFLGLPILQALFGERG-----VAYAIIFDVVNNIILWSLGYFLLESRSEK 151 (385)
T ss_pred EEecccCCcchhhHHHHHHHHhcchh-----hhhehHHHHhhHHHHHHHHHHhhcccccc
Confidence 33444567777777777755543321 23444444444444444444444333333
Done!