Query psy15816
Match_columns 171
No_of_seqs 185 out of 1205
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 22:04:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 98.2 5.3E-06 1.8E-10 69.7 10.1 117 18-141 76-198 (491)
2 3o7q_A L-fucose-proton symport 98.2 1.2E-05 4.3E-10 66.1 11.9 125 18-147 83-237 (438)
3 1pw4_A Glycerol-3-phosphate tr 98.1 3.7E-06 1.3E-10 69.5 6.4 117 18-139 84-206 (451)
4 1pw4_A Glycerol-3-phosphate tr 97.9 7.9E-05 2.7E-09 61.4 10.1 68 67-140 365-434 (451)
5 2cfq_A Lactose permease; trans 97.7 0.00012 4E-09 60.9 8.0 115 19-140 282-400 (417)
6 4gc0_A D-xylose-proton symport 97.4 0.00054 1.8E-08 57.2 8.8 123 18-140 334-463 (491)
7 3o7q_A L-fucose-proton symport 97.4 0.00047 1.6E-08 56.6 7.6 109 19-134 318-427 (438)
8 2xut_A Proton/peptide symporte 97.3 0.0015 5.2E-08 55.1 10.0 113 19-138 77-197 (524)
9 2xut_A Proton/peptide symporte 97.1 0.00044 1.5E-08 58.5 5.2 73 65-141 422-504 (524)
10 4aps_A DI-OR tripeptide H+ sym 97.1 0.00079 2.7E-08 56.3 6.2 68 66-140 404-472 (491)
11 2gfp_A EMRD, multidrug resista 97.0 0.00041 1.4E-08 56.0 3.2 63 68-136 108-171 (375)
12 2gfp_A EMRD, multidrug resista 94.3 0.028 9.7E-07 45.0 3.4 60 62-127 305-364 (375)
13 4gc0_A D-xylose-proton symport 94.2 0.13 4.5E-06 42.5 7.4 66 67-132 145-213 (491)
14 2cfq_A Lactose permease; trans 70.0 0.2 6.9E-06 41.0 -4.0 46 80-132 135-180 (417)
15 3rko_J NADH-quinone oxidoreduc 54.4 12 0.0004 28.0 3.6 31 116-146 135-165 (184)
16 2knc_A Integrin alpha-IIB; tra 40.6 50 0.0017 19.5 4.2 21 118-138 13-33 (54)
17 2knc_B Integrin beta-3; transm 30.9 2.8 9.6E-05 27.0 -2.7 23 117-139 10-32 (79)
18 1ldf_A Glycerol uptake facilit 27.0 39 0.0014 26.5 2.8 23 118-140 232-255 (281)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.25 E-value=5.3e-06 Score=69.70 Aligned_cols=117 Identities=14% Similarity=0.071 Sum_probs=76.3
Q ss_pred HHHHH-HHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-ch--HHHHHHHHHHH
Q psy15816 18 MFTLA-LTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NF--SGTIFGLANTL 91 (171)
Q Consensus 18 ~l~l~-~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~--ag~v~gi~n~~ 91 (171)
.++.+ ..||.....|.....+.. .++ ..+...-.....+.-...+...+...+...|..| +. .+..+++.+..
T Consensus 76 ~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 154 (491)
T 4aps_A 76 FVADRIIGARPAVFWGGVLIMLGHIVLAL-PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFG 154 (491)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHS-CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHH
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHH
Confidence 45667 678888877776665432 222 2333322222222222223333444555567665 44 68899999999
Q ss_pred HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816 92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141 (171)
Q Consensus 92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~ 141 (171)
.+++.+++|.+.|++.+. .+|+..|++.+.+.+++.+.+.+..+
T Consensus 155 ~~~g~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 155 INLGAFIAPLIVGAAQEA------AGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999998775 46999999988888777776665543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.24 E-value=1.2e-05 Score=66.10 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhh-c---cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIA-P---NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLS 92 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~-~---~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g 92 (171)
.++.+..||.....+.....+... . ....+.+.-.....+.-...+...+...+...|..| ++.+...++.+...
T Consensus 83 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 162 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 466677788887777766654321 1 122343332222222222233333444555567777 67799999999999
Q ss_pred hhhhhhhhhhhheee-cCCCccccCC------------------------hhHHHHHHHHHHHHHHHhhhheecccccCC
Q psy15816 93 SFGGFVSSHIVGVLT-DGDKVRHFRP------------------------WQYVFMVLTTTYTVGAIVFLIFGTGQLQPW 147 (171)
Q Consensus 93 ~l~gii~p~i~G~iv-~~~~~~~~~~------------------------w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w 147 (171)
+++.+++|.+.+++. +.. +. |+..|.+.+++.++..+.+.+...+|.++.
T Consensus 163 ~~g~~~g~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 237 (438)
T 3o7q_A 163 SFGAIIAVVFGQSLILSNV-----PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD 237 (438)
T ss_dssp HHHHHHHHHHTTHHHHTSS-----CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT
T ss_pred HHHHHHHHHHHHHHHhccc-----ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 999999999999988 442 33 999998887777766666555544444443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.12 E-value=3.7e-06 Score=69.46 Aligned_cols=117 Identities=10% Similarity=-0.007 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh--hccC---CcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDI--APNF---SEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTL 91 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~---~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~ 91 (171)
.++.+..||.....+.....+.. .++. ..+....++...+.-...+...+...+...|..| ++.+..+|+.+..
T Consensus 84 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 163 (451)
T 1pw4_A 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 163 (451)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHH
Confidence 45666777877777766655432 2220 2333322222222222333334455566678777 6789999999999
Q ss_pred HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
..++.+++|.+.|++.+.. ++|+.+|++.+++.++..+...++
T Consensus 164 ~~~g~~~g~~~~~~l~~~~-----g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 164 HNVGGGIPPLLFLLGMAWF-----NDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHTSHHHHHHHHHHHT-----CCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999877642 249999999888877666554443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.88 E-value=7.9e-05 Score=61.38 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=55.8
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhh-hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSF-GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l-~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
...+....|..| +..|.+.|+.+...++ ++.++|.+.|++.+.. +|+.+|.+.+++.+++.+.+.++.
T Consensus 365 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 365 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455667777 5689999999999999 9999999999998863 599999999988888887766653
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.68 E-value=0.00012 Score=60.85 Aligned_cols=115 Identities=13% Similarity=0.018 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHH-HHHHHhh
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGL-ANTLSSF 94 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi-~n~~g~l 94 (171)
+..+..||.....+.....+.+ .++. .+....+....+.....+....+.+....|..| +..|+..|+ .|....+
T Consensus 282 l~dr~g~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l 360 (417)
T 2cfq_A 282 IINRIGGKNALLLAGTIMSVRIIGSSFA-TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL 360 (417)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHTTC-CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH
Confidence 3445566666655655554432 2222 333322222111111122222344566667777 557888888 4889999
Q ss_pred hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
+++++|.+.|++.+. .+|+..|.+.+++.+++.+.+.++.
T Consensus 361 g~~~gp~l~G~l~~~------~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 361 AMIFMSVLAGNMYES------IGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHTHHHHTHHHH------SHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHhhhhHHHHHHh------cCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999988775 3488899998988888887765543
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.43 E-value=0.00054 Score=57.24 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhh----c-cCCcchHHHHHHHHHHHHhhhhcc-hhhhhhhhcccc-chHHHHHHHHHH
Q psy15816 18 MFTLALTFNGAVTAGYLGNGLDIA----P-NFSEDPIFAVAMFTLALTFNGAVT-AGYLGNGLDIAP-NFSGTIFGLANT 90 (171)
Q Consensus 18 ~l~l~~ark~~~~~G~~~~~l~l~----~-~~~~~~~~av~ll~la~~~~~~~~-~g~~~~~~diap-~~ag~v~gi~n~ 90 (171)
.+..+..||.....+.....+.+. . ........++..+.+.....+... +..|....|+.| +..++..|+.+.
T Consensus 334 ~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~ 413 (491)
T 4gc0_A 334 MTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA 413 (491)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred HHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 455566777766666555543321 1 122233333333332222222221 234566678888 567999999999
Q ss_pred HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
.+.+++++.|.+...+.+.........+...|++.+++.+++.++..++.
T Consensus 414 ~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 414 AQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 99999999988877765431000012355678888888887777554443
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.37 E-value=0.00047 Score=56.57 Aligned_cols=109 Identities=11% Similarity=0.040 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhh
Q psy15816 19 FTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGF 97 (171)
Q Consensus 19 l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gi 97 (171)
+..+..||.....+.....+.+.. ....+......+..++ .+.+...+..++...+..|++.+...++.+ .+.+++.
T Consensus 318 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~ 395 (438)
T 3o7q_A 318 LISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGG 395 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHH
Confidence 444555666665555555443221 1223333222222222 333333455566655666766788888877 7789999
Q ss_pred hhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816 98 VSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134 (171)
Q Consensus 98 i~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i 134 (171)
++|.+.|++.+.. ++|+..|.+.++..++..+
T Consensus 396 ~~~~~~g~l~~~~-----g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 396 IVTPVMGFVSDAA-----GNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHHH-----TSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHH
Confidence 9999999998863 4588888876655554443
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.28 E-value=0.0015 Score=55.10 Aligned_cols=113 Identities=13% Similarity=-0.017 Sum_probs=68.4
Q ss_pred HHHHH-HHHHHHHHhhHHHHhhh--hccCCc-chHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHH---HHHHHHH
Q psy15816 19 FTLAL-TFNGAVTAGYLGNGLDI--APNFSE-DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGT---IFGLANT 90 (171)
Q Consensus 19 l~l~~-ark~~~~~G~~~~~l~l--~~~~~~-~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~---v~gi~n~ 90 (171)
++.+. .||.....+.....+.. .++. . +.........+.-...+...+...+...|..| +..+. .+++.+.
T Consensus 77 l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 155 (524)
T 2xut_A 77 IADRFFGKYNTILWLSLIYCVGHAFLAIF-EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYF 155 (524)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 34444 66666666655554432 2222 3 43332222222222233333444556667666 44444 4555999
Q ss_pred HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816 91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~ 138 (171)
..+++++++|.+.|++.+. .+|+..|.+.+++.+++.+.+.+
T Consensus 156 ~~~~g~~~g~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 156 TINFGSFFASLSMPLLLKN------FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHTSTHHHHT------SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765 46999999988887777666544
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.15 E-value=0.00044 Score=58.47 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=52.5
Q ss_pred cchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCCh---------hHHHHHHHHHHHHHHH
Q psy15816 65 VTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPW---------QYVFMVLTTTYTVGAI 134 (171)
Q Consensus 65 ~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w---------~~vF~i~a~i~~~g~i 134 (171)
..+..+....|..| +..|.++|+.++...++++++|.+.|.+.+.. ..+| +..|.+.+++.+++.+
T Consensus 422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
T 2xut_A 422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGMSVTAFQMFFFAGFAILAAI 497 (524)
T ss_dssp HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH----HHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc----cccccccccccccccHHHHHHHHHHHHHH
Confidence 33555666777777 56899999999999999999999999887642 1234 3447788888888887
Q ss_pred hhhheec
Q psy15816 135 VFLIFGT 141 (171)
Q Consensus 135 ~~~~~~~ 141 (171)
+++++.+
T Consensus 498 ~~~~~~~ 504 (524)
T 2xut_A 498 VFALYAR 504 (524)
T ss_dssp HHC----
T ss_pred HHHHHHH
Confidence 7766543
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.09 E-value=0.00079 Score=56.31 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=51.9
Q ss_pred chhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816 66 TAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG 140 (171)
Q Consensus 66 ~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~ 140 (171)
.+..+....|..| +..|.+.|+.+...+++++++|.+.|++.+. .+...|.+.+++.+++.++..++.
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 472 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-------SEVAYFSYFGLGSVVLGIVLVFLS 472 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-------STTHHHHHTHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778 5579999999999999999999999987653 356678887777777777666554
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.97 E-value=0.00041 Score=56.00 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=49.4
Q ss_pred hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816 68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF 136 (171)
Q Consensus 68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~ 136 (171)
...+...|..| ++.+..+++.+....++.+++|.+.+++.+. .+|+..|.+.+.+.++..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM------WNWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH------HHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHH
Confidence 33444556665 5679999999999999999999999988764 369999999888877766633
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=94.28 E-value=0.028 Score=44.98 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=46.5
Q ss_pred hhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHH
Q psy15816 62 NGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTT 127 (171)
Q Consensus 62 ~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~ 127 (171)
.+...+...+...|..|++.|.+.|+.+...++++.++|.+.|.+.+. ++|+..|.+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------~~~~~~~~~~~~ 364 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT------GQGSLGLLMTLM 364 (375)
T ss_dssp HHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH------HHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcC------CcccHHHHHHHH
Confidence 344445556666787788889999999999999999999999988654 467777776443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=94.20 E-value=0.13 Score=42.54 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=40.4
Q ss_pred hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCcc--ccCChhHHHHHHHHHHHHH
Q psy15816 67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVR--HFRPWQYVFMVLTTTYTVG 132 (171)
Q Consensus 67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~--~~~~w~~vF~i~a~i~~~g 132 (171)
+.......|.+| ++.|...++.+....++.++++.+...+....... ....|+..+.+.....++.
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 334455568888 67899999999888888888877755444332100 1134676666554444433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=69.96 E-value=0.2 Score=41.04 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHH
Q psy15816 80 FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVG 132 (171)
Q Consensus 80 ~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g 132 (171)
..+...|..+..+++++.++|.+.|++.+. +|+..|++.++..++.
T Consensus 135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-------~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 135 RSNFEFGRARMFGCVGWALGASIVGIMFTI-------NNQFVFWLGSGCALIL 180 (417)
T ss_dssp HHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-------CSHHHHTTTTTTTTTH
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHh-------chhHHHHHHHHHHHHH
Confidence 346667888888999999999999988653 4888988766554433
No 15
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=54.45 E-value=12 Score=28.00 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHHHHHHHhhhheecccccC
Q psy15816 116 RPWQYVFMVLTTTYTVGAIVFLIFGTGQLQP 146 (171)
Q Consensus 116 ~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~ 146 (171)
++|-..|-+.+.+++++.+--..+.++|+++
T Consensus 135 t~Y~lpFElaSvlLLvAmIGAIvLarr~~~~ 165 (184)
T 3rko_J 135 GPYVLAVELASMLLLAGLVVAFHVGREERAG 165 (184)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3688889999999988887777777776654
No 16
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=40.64 E-value=50 Score=19.51 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q psy15816 118 WQYVFMVLTTTYTVGAIVFLI 138 (171)
Q Consensus 118 w~~vF~i~a~i~~~g~i~~~~ 138 (171)
|-.+..+.++++++..+++.+
T Consensus 13 wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666778888877777766
No 17
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.95 E-value=2.8 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhe
Q psy15816 117 PWQYVFMVLTTTYTVGAIVFLIF 139 (171)
Q Consensus 117 ~w~~vF~i~a~i~~~g~i~~~~~ 139 (171)
-|..+..+.+++.++|.++.+++
T Consensus 10 ~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777766654
No 18
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=26.99 E-value=39 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=14.5
Q ss_pred hhHHHHHHHHH-HHHHHHhhhhee
Q psy15816 118 WQYVFMVLTTT-YTVGAIVFLIFG 140 (171)
Q Consensus 118 w~~vF~i~a~i-~~~g~i~~~~~~ 140 (171)
|.+++++.-.+ .++++++|-++.
T Consensus 232 ~~WVy~vgPi~Ga~la~~~y~~l~ 255 (281)
T 1ldf_A 232 YFLVPLFGPIVGAIVGAFAYRKLI 255 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeHHhHHHHHHHHHHHHHHHHHh
Confidence 57888876554 455666666554
Done!