RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15816
(171 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 31.9 bits (73), Expect = 0.078
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 51 AVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIV-GVLTD 108
+ M + G V L + L++AP +GT G GG V++ + G D
Sbjct: 350 MICMIVIGFLIYGPVMLIGL-HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408
Query: 109 GDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139
F W FMV+ + I+ ++
Sbjct: 409 ------FFGWDGGFMVMIGGSILAVILLIVV 433
Score = 29.2 bits (66), Expect = 0.63
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 5/58 (8%)
Query: 82 GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF 139
G I + N + GG + + + + F W + + A+
Sbjct: 154 GGIVSVWNCAHNVGGGIPPLLFLLG-----MAWFNDWHAALYMPAFCAILVALFAFAM 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.62
Identities = 24/150 (16%), Positives = 40/150 (26%), Gaps = 44/150 (29%)
Query: 8 TGEDPIFAVAMFTLALTFNG-AVTAGYLGNGL----DIAPNFSEDPIFAVAMFTLALTFN 62
G + A+ F G T Y L D I A L
Sbjct: 151 EGNAQLVAI--------FGGQGNTDDYF-EELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 63 GAVTAGYLGNGLDI---------APN--------FSGTIFGLANTLSSFGGFVSSHIVGV 105
GL+I P+ S + G+ L+ + V++ ++G
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI-QLAHY--VVTAKLLG- 257
Query: 106 LTDGDKVRHFRPWQYVFMVLTTTYTVGAIV 135
T G+ + + T +V
Sbjct: 258 FTPGELRSYLK---------GATGHSQGLV 278
Score = 28.9 bits (64), Expect = 0.96
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 16/51 (31%)
Query: 133 AIVFLIFGTGQ---------LQP-WNT--PKISDDVELAKKEAEPLKKISS 171
A + IFG GQ L+ + T + D ++ + AE L ++
Sbjct: 154 AQLVAIFG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFS---AETLSELIR 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 28.0 bits (63), Expect = 0.72
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 46 EDPIFAVAMFTLALT------FNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFG 95
EDP + LA + A+ ++ P++ GT + L
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALA--LFEELVETDPDYVGTYYHLGKLYERLD 55
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 28.2 bits (63), Expect = 1.6
Identities = 25/134 (18%), Positives = 32/134 (23%), Gaps = 36/134 (26%)
Query: 17 AMFTLALTFNGAV------TAGYLGNGLDIAPNFSEDP------------IFAVA---MF 55
+ + LG G + P I + A M
Sbjct: 19 YKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMH 78
Query: 56 TLALTFNGAV------TAGYLGNG---------LDIAPNFSGTIFGLANTLSSFGGFVSS 100
TLAL V G LG A + S G N L S +
Sbjct: 79 TLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPR 138
Query: 101 HIVGVLTDGDKVRH 114
L +G KV
Sbjct: 139 ESFPPLAEGHKVVQ 152
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein
structure initiative, joint center for structural G
transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Length = 298
Score = 27.0 bits (60), Expect = 3.0
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 24 TFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVT 66
T A G++ + I + FA A+ ++ + G +
Sbjct: 247 TCTAAFLVGFVFKKMSIE----KATKFAAAVTSVKMRHPGPLR 285
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 26.8 bits (60), Expect = 4.0
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 136 FLIFGTGQLQPWNTPKI 152
FLI TG L P I
Sbjct: 138 FLISATGPLSASRMPDI 154
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 26.9 bits (60), Expect = 4.3
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 93 SFGGFVSSHIV--------GVLTDGDKVRHFRP 117
S GGFV +V G LT GD ++ F P
Sbjct: 752 SLGGFVCQAVVAEAELWKVGQLTPGDTIQ-FVP 783
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 26.8 bits (60), Expect = 4.3
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 136 FLIFGTGQLQPWNTPKI 152
+++ G L N P +
Sbjct: 138 YVVNAVGLLSAINFPNL 154
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 26.4 bits (59), Expect = 6.0
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 22/77 (28%)
Query: 19 FTLALTFNGAV------TAGYLGNGLDIA-------PNFSEDPIFAVA---MFTLALTFN 62
F++ALT +GAV LG+G D + A+A + + T +
Sbjct: 276 FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTED 335
Query: 63 GAV------TAGYLGNG 73
G V G LG+G
Sbjct: 336 GEVYTWGDNDEGQLGDG 352
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 26.0 bits (58), Expect = 6.7
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 136 FLIFGTGQLQPWNTPKI 152
FL+ G L NTP
Sbjct: 150 FLVVAAGPLSNANTPAF 166
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 26.0 bits (58), Expect = 7.1
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 136 FLIFGTGQLQPWNTPKI 152
+LI +GQL P
Sbjct: 145 YLIMASGQLSVPQLPNF 161
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 25.9 bits (56), Expect = 8.1
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 49 IFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLS-SFGGFVSSHIVGVLT 107
+V +F ++ +G + + S FG+ N+L S G F+
Sbjct: 526 GVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPR 585
Query: 108 DGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI 138
W + +++ ++YT FL
Sbjct: 586 SLSGRIVGGVWWFFTLIIISSYTANLAAFLT 616
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.423
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,669,021
Number of extensions: 159580
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 28
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)