RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15816
         (171 letters)



>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 288

 Score = 27.2 bits (59), Expect = 1.0
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 24  TFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVT 66
           T   A   G++   + I     +   FA A+ ++ +   G + 
Sbjct: 242 TCTAAFLVGFVFKKMSIE----KATKFAAAVTSVKMRHPGPLR 280



 Score = 24.2 bits (51), Expect = 9.0
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 60  TFNGAVTAGYLGNGLDI 76
           T   A   G++   + I
Sbjct: 242 TCTAAFLVGFVFKKMSI 258


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 26.7 bits (57), Expect = 1.6
 Identities = 9/140 (6%), Positives = 34/140 (24%), Gaps = 7/140 (5%)

Query: 1   MDCKIIYTGEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALT 60
              +++         + +  +       +    +   +  +   +      +        
Sbjct: 266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE 325

Query: 61  FNGAVTAGYLGNGLDIAPNFSGTIFGLANTLS-SFGGFVSSHIVGVLTDGDKVRHFRPWQ 119
               +   +          FS TI+ +             S + G + +         +Q
Sbjct: 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE------SIGFQ 379

Query: 120 YVFMVLTTTYTVGAIVFLIF 139
             ++VL        ++ +  
Sbjct: 380 GAYLVLGLVALGFTLISVFT 399


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 632,043
Number of extensions: 27859
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)