BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15819
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F5J|A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15
pdb|2F5J|B Chain B, Crystal Structure Of Mrg Domain From Human Mrg15
Length = 181
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
Query: 71 RTWLVDDWDTINNKNKLHQIPAKTSVDEIFESYLKHKANSKQMSGAKGKTVTEMVAGLKE 130
+ WLVDDWD I + +L +PAK +VD I E Y +K S+ + K V E+VAG+KE
Sbjct: 15 KPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYK-KSRGNTDNKEYAVNEVVAGIKE 73
Query: 131 YFNVMLGSQLLYQAERRQYSQVMQKYQGAPLSSLYGASHLLRLFVRIGSVLAYTGLTERN 190
YFNVMLG+QLLY+ ER QY++++ + AP+S +YGA HLLRLFVRIG++LAYT L E++
Sbjct: 74 YFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKS 133
Query: 191 IQLLQNAFQDFL 202
+ LL N DFL
Sbjct: 134 LALLLNYLHDFL 145
>pdb|2AQL|A Chain A, Crystal Structure Of The Mrg15 Mrg Domain
pdb|2AQL|B Chain B, Crystal Structure Of The Mrg15 Mrg Domain
Length = 173
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
Query: 71 RTWLVDDWDTINNKNKLHQIPAKTSVDEIFESYLKHKANSKQMSGAKGKTVTEMVAGLKE 130
+ WLVDDWD I + +L +PAK +VD I E Y +K S+ + K V E+VAG+KE
Sbjct: 15 KPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYK-KSRGNTDNKEYAVNEVVAGIKE 73
Query: 131 YFNVMLGSQLLYQAERRQYSQVMQKYQGAPLSSLYGASHLLRLFVRIGSVLAYTGLTERN 190
YFNVMLG+QLLY+ ER QY++++ + AP+S +YGA HLLRLFVRIG++LAYT L E++
Sbjct: 74 YFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKS 133
Query: 191 IQLLQNAFQDFL 202
+ LL N DFL
Sbjct: 134 LALLLNYLHDFL 145
>pdb|2LKM|B Chain B, Structural Basis For Molecular Interactions Involving Mrg
Domains: Implications In Chromatin Biology
Length = 172
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
Query: 71 RTWLVDDWDTINNKNKLHQIPAKTSVDEIFESYLKHKANSKQMSGAKGKTVTEMVAGLKE 130
+ WLVDDWD I + +L +PAK +VD I E Y ++ S+ + K V E+VAG+KE
Sbjct: 14 KPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYR-KSRGNTDNKEYAVNEVVAGIKE 72
Query: 131 YFNVMLGSQLLYQAERRQYSQVMQKYQGAPLSSLYGASHLLRLFVRIGSVLAYTGLTERN 190
YFNVMLG+QLLY+ ER QY++++ + AP+S +YGA HLLRLFVRIG++LAYT L E++
Sbjct: 73 YFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKS 132
Query: 191 IQLLQNAFQDFL 202
+ LL N DFL
Sbjct: 133 LALLLNYLHDFL 144
>pdb|2Y0N|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|B Chain B, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|C Chain C, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|D Chain D, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
Length = 211
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 34/179 (18%)
Query: 57 EGRCVTPTLDKICSRTWLVDDWDTINNKNKLHQIPAKTSVDEIFESYLKHKANSKQMSG- 115
E R +T + ++ + L DD IN + +L ++P +T++ I ESY+KH A + S
Sbjct: 4 EERTITIEIPEVLKK-QLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSAN 62
Query: 116 -------------------AKGKTVT---EMVAGLKEYFNVMLGSQLLYQAERRQYSQVM 153
K V EMV GL+ F+ L LLY E+ QY +V
Sbjct: 63 ERPRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVT 122
Query: 154 Q-KY---------QGAPLSSLYGASHLLRLFVRIGSVLAYTGLTERNIQLLQNAFQDFL 202
KY Q P S +YGA HLLRLFV++ +L +E+N++ L F FL
Sbjct: 123 SSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFL 181
>pdb|2LRQ|A Chain A, Chemical Shift Assignment And Solution Structure Of
Fr822a From Drosophila Melanogaster. Northeast
Structural Genomics Consortium Target Fr822a
Length = 85
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 4 HYK-WKRKWDEWVPECRVLKFNESNVQR 30
HY W + WDEWVPE RVLK+N+ NV+R
Sbjct: 47 HYAGWSKNWDEWVPENRVLKYNDDNVKR 74
>pdb|2EFI|A Chain A, Solution Structure Of The Chromo Domain Of Mortality
Factor 4-Like Protein 1 From Human
Length = 100
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 4 HYK-WKRKWDEWVPECRVLKFNESNVQR 30
HY W + WDEWVPE RVLK+ ++N+Q+
Sbjct: 52 HYSGWNKNWDEWVPESRVLKYVDTNLQK 79
>pdb|2F5K|A Chain A, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|B Chain B, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|C Chain C, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|D Chain D, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|E Chain E, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|F Chain F, Crystal Structure Of The Chromo Domain Of Human Mrg15
Length = 102
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 4 HYK-WKRKWDEWVPECRVLKFNESNVQR 30
HY W + WDEWVPE RVLK+ ++N+Q+
Sbjct: 57 HYSGWNKNWDEWVPESRVLKYVDTNLQK 84
>pdb|2K3Y|A Chain A, Solution Structure Of Eaf3 Chromo Barrel Domain Bound To
Histone H3 With A Dimethyllysine Analog H3k36me2
Length = 136
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 4 HYK-WKRKWDEWVPECRVLKFNESNV 28
HY+ WK WDEWV R+ +NE N+
Sbjct: 82 HYQGWKSSWDEWVGYDRIRAYNEENI 107
>pdb|3E9G|A Chain A, Crystal Structure Long-Form (Residue1-124) Of Eaf3 Chromo
Domain
pdb|3E9G|B Chain B, Crystal Structure Long-Form (Residue1-124) Of Eaf3 Chromo
Domain
Length = 130
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 4 HYK-WKRKWDEWVPECRVLKFNESNV 28
HY+ WK WDEWV R+ +NE N+
Sbjct: 80 HYQGWKSSWDEWVGYDRIRAYNEENI 105
>pdb|2K3X|A Chain A, Solution Structure Of Eaf3 Chromo Barrel Domain
pdb|3E9F|A Chain A, Crystal Structure Short-Form (Residue1-113) Of Eaf3 Chromo
Domain
Length = 121
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 4 HYK-WKRKWDEWVPECRVLKFNESNV 28
HY+ WK WDEWV R+ +NE N+
Sbjct: 80 HYQGWKSSWDEWVGYDRIRAYNEENI 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,288,229
Number of Sequences: 62578
Number of extensions: 171600
Number of successful extensions: 427
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 17
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)