RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15819
(203 letters)
>gnl|CDD|218713 pfam05712, MRG, MRG. This family consists of three different
eukaryotic proteins (mortality factor 4 (MORF4/MRG15),
male-specific lethal 3(MSL-3) and ESA1-associated factor
3(EAF3)). It is thought that the MRG family is involved
in transcriptional regulation via histone acetylation.
It contains 2 chromo domains and a leucine zipper motif.
Length = 191
Score = 139 bits (352), Expect = 9e-42
Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 71 RTWLVDDWDTINNKNKLHQIPAKTSVDEIFESYLKHKANSKQMSGAKGKT--VTEMVAGL 128
+ LVDDW+ I KL +PA+ V I E Y+K +A + S + + + E+V GL
Sbjct: 37 KKLLVDDWEYITKDKKLVALPARVPVVTILEDYVKERAIKQDSSTSSARMELLEEVVDGL 96
Query: 129 KEYFNVMLGSQLLYQAERRQYSQVMQKY-----QGAPLSSLYGASHLLRLFVRIGSVLAY 183
+ YFN LG LLY+ ER QY ++++ S +YGA HLLRLFV++ +L+
Sbjct: 97 RIYFNKALGDLLLYKFERLQYLELLKDNLLSAESDKRPSDIYGAEHLLRLFVKLPELLSQ 156
Query: 184 TGLTERNIQLLQNAFQDFL 202
T + E+++ L +DFL
Sbjct: 157 TNMDEQSLNRLLKHLEDFL 175
>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family. This subfamily
of the adenylate kinase superfamily contains examples of
UMP-CMP kinase, as well as others proteins with unknown
specificity, some currently designated adenylate kinase.
All known members are eukaryotic.
Length = 183
Score = 31.9 bits (73), Expect = 0.12
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 71 RTWLVDDWDTIN---NKNKLHQIPAKTSVDEIFESYLK 105
RT+ I NK K+ +I A+ SV+E+FE K
Sbjct: 143 RTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEK 180
>gnl|CDD|239020 cd02069, methionine_synthase_B12_BD, B12 binding domain of
methionine synthase. This domain binds methylcobalamin,
which it uses as an intermediate methyl carrier from
methyltetrahydrofolate (CH3H4folate) to homocysteine
(Hcy).
Length = 213
Score = 30.7 bits (70), Expect = 0.38
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 93 KTSVDEIFESYLKHKANSKQMSGAKGKTVTEMVAGLKEY 131
+++I E+ +HKA+ +SG ++ EMV +E
Sbjct: 125 MVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEM 163
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
methyltransferase. This family represents
5-methyltetrahydrofolate--homocysteine methyltransferase
(EC 2.1.1.13), one of at least three different enzymes
able to convert homocysteine to methionine by
transferring a methyl group on to the sulfur atom. It is
also called the vitamin B12(or cobalamine)-dependent
methionine synthase. Other methionine synthases include
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase (MetE, EC 2.1.1.14, the
cobalamin-independent methionine synthase) and
betaine-homocysteine methyltransferase [Amino acid
biosynthesis, Aspartate family].
Length = 1178
Score = 30.9 bits (70), Expect = 0.43
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 82 NNKNKLHQIPAKTSVDEIFESYLKHKANSKQMSGAKGKTVTEMVAGLKEY------FNVM 135
N ++ + +++I E+ H A+ +SG ++ EM +E ++
Sbjct: 758 CNGYEVVDLGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNRRGITIPLL 817
Query: 136 LGSQLLYQAERRQYSQVMQKYQG 158
+G + ++ Y+G
Sbjct: 818 IGGAATSKTHTAV--KIAPIYKG 838
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 28.7 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 79 DTINNKNKLHQIPAKTSVDEIFESYLKHKANSKQMS 114
D + K KL+ I A +VDEIFE A + M
Sbjct: 194 DYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEAMK 229
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 28.4 bits (64), Expect = 2.3
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 113 MSGAKGKTVTEMVAGLKEYFNVMLGSQLLYQAERRQY 149
S +G+ + E+ ++++ + S L + R QY
Sbjct: 234 TSALEGEGIDELWDAIEDHRKFLTESGLFTEKRRTQY 270
>gnl|CDD|219345 pfam07243, Phlebovirus_G1, Phlebovirus glycoprotein G1. This
family consists of several Phlebovirus glycoprotein G1
sequences. Members of the Bunyaviridae family acquire an
envelope by budding through the lipid bilayer of the
Golgi complex. The budding compartment is thought to be
determined by the accumulation of the two heterodimeric
membrane glycoproteins G1 and G2 in the Golgi.
Length = 527
Score = 28.3 bits (63), Expect = 3.0
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 35 KKSQQESDQSSKKKKKFDGKDSEGRCVTPTLDKICS 70
K Q S S +K K + +G V + K CS
Sbjct: 219 HKGQDSSSGSHRKLKSVKVESCKG--VDTSSAKKCS 252
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 28.2 bits (63), Expect = 3.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 157 QGAPLSSLYGASHLLRLF 174
+G PL+ LYG+S + L
Sbjct: 318 RGVPLTGLYGSSEVQALV 335
>gnl|CDD|218450 pfam05128, DUF697, Domain of unknown function (DUF697). Family of
bacterial hypothetical proteins that is sometimes
associated with GTPase domains.
Length = 162
Score = 26.8 bits (60), Expect = 5.4
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 161 LSSLYG----ASHLLRLFVRIGSVLAYTGLTERNIQLLQNAFQ 199
L+ LYG +RL + LA G E LL A
Sbjct: 61 LAKLYGIELGYEGAIRLARSVLKNLAGLGAVELGTDLLGQALS 103
>gnl|CDD|152153 pfam11717, Tudor-knot, RNA binding activity-knot of a
chromodomain. This is a novel knotted tudor domain
which is required for binding to RNA. The know
influences the loop conformation of the helical turn
Ht2 - residues 61-6 3- that is located at the side
opposite the knot in the tudor domain-chromodomain;
stabilisation of Ht2 is essential for RNA binding.
Length = 55
Score = 25.3 bits (56), Expect = 5.5
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 4 HY-KWKRKWDEWVPECRVLK 22
HY + ++ DEWV R+
Sbjct: 36 HYVGFNKRLDEWVDRDRIDL 55
>gnl|CDD|225960 COG3426, COG3426, Butyrate kinase [Energy production and
conversion].
Length = 358
Score = 27.4 bits (61), Expect = 6.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 162 SSLYGASHLLRLFVRIGSVLAYTG 185
S Y LL+ G ++AY G
Sbjct: 230 SGKYTEEELLKKITGKGGLVAYLG 253
>gnl|CDD|218288 pfam04842, DUF639, Plant protein of unknown function (DUF639).
Plant protein of unknown function.
Length = 682
Score = 27.5 bits (61), Expect = 6.5
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 132 FNVMLGSQLLYQAERRQYSQVMQKYQGAPLSSLYGASHLLRLFVRIGSVL 181
F++ML + Y R Y+ K PL G S F+RI +
Sbjct: 98 FDMMLAWENPYVKSRNSYNDASGKPSFMPLLVDEGRSVGEEAFIRIAPAI 147
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. In E. coli,
mutation of this kinase blocks phosphorylation of two
transporter system periplasmic binding proteins and
consequently inhibits those transporters. This kinase is
also found in Gram-positive bacteria, archaea, and the
roundworm C. elegans. It may have a more general, but
still unknown function. Mutations have also been found
that do not phosphorylate the periplasmic binding
proteins, yet still allow transport. The ATPase activity
of this protein seems to be necessary, however
[Transport and binding proteins, Amino acids, peptides
and amines, Regulatory functions, Protein interactions].
Length = 300
Score = 27.0 bits (60), Expect = 7.1
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 98 EIFESYLKHKANSKQMSGAKGKTVTEMVAGLKEYFNVMLGSQLLYQAERRQYSQV 152
EI + S +G+ + E+ ++E+ + S LL ERR+ V
Sbjct: 203 EIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTFLTASGLL--QERRRQRSV 255
>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde
dehydrogenase related proteins, child 1. Members
identified as glutathione-dependent formaldehyde
dehydrogenase(FDH), a member of the
zinc-dependent/medium chain alcohol dehydrogenase
family. FDH converts formaldehyde and NAD(P) to formate
and NAD(P)H. The initial step in this process the
spontaneous formation of a S-(hydroxymethyl)glutathione
adduct from formaldehyde and glutathione, followed by
FDH-mediated oxidation (and detoxification) of the
adduct to S-formylglutathione. MDH family uses NAD(H)
as a cofactor in the interconversion of alcohols and
aldehydes, or ketones. Like many zinc-dependent alcohol
dehydrogenases (ADH) of the medium chain alcohol
dehydrogenase/reductase family (MDR), these FDHs form
dimers, with 4 zinc ions per dimer. The medium chain
alcohol dehydrogenase family (MDR) has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit.
Length = 386
Score = 27.1 bits (61), Expect = 7.6
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 142 YQAERRQYSQ--------VMQKYQGAPLSSLYGASHLL 171
+ +R YSQ M K G + ++G SHL
Sbjct: 94 FYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLT 131
>gnl|CDD|224328 COG1410, MetH, Methionine synthase I, cobalamin-binding domain
[Amino acid transport and metabolism].
Length = 842
Score = 26.9 bits (60), Expect = 8.8
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 96 VDEIFESYLKHKANSKQMSGAKGKTVTEMVAGLKE-----YFNVMLG 137
++I E+ + KA+ +SG ++ EM L+E + V++G
Sbjct: 447 AEKILEAAEEEKADIIGLSGLITPSLDEMKEVLEEMNRGGFIPVLIG 493
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.391
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,882,876
Number of extensions: 854788
Number of successful extensions: 954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 31
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)