RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15819
         (203 letters)



>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1,
          MRG15 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 83

 Score = 55.3 bits (133), Expect = 2e-11
 Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 4  HYK-WKRKWDEWVPECRVLKFNESNVQRQKDLKKSQQESDQSSK 46
          HY  W + WDEWVPE RVLK+ ++N+Q+Q++L+K+ QE     K
Sbjct: 40 HYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGK 83


>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 133

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   HYK-WKRKWDEWVPECRVLKFNESNVQRQKDLKKSQQESDQSSKKKKKFDGK 54
           HY  + R+ DEWV + R+          QK+ +K   E  +  ++K   + K
Sbjct: 50  HYVGFNRRLDEWVDKNRLALTKTVKDAVQKNSEKYLSELAEQPERKITRNQK 101


>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase
          MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 88

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)

Query: 4  HYK-WKRKWDEWVPECRVLKFNE 25
          HY    R+ D WV   R+    +
Sbjct: 49 HYVGLNRRLDGWVGRHRISDNAD 71


>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 26.7 bits (58), Expect = 2.2
 Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 15/156 (9%)

Query: 38  QQESDQSSKKKKKFDGKDSEGRCV-TPTLDKICSRTWLVDDW-DTINNKNKLHQIPAKTS 95
           +Q   Q  K  +    +  EGR V     D                    ++       +
Sbjct: 99  EQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGN 158

Query: 96  VDEIFESYLKH--KANSKQMSGAKGKTVTEMVAGLKEYFNVMLGSQLLYQAERRQYSQVM 153
           +  +  S L       +  +  ++G         L      ++  +L+Y A  R   ++ 
Sbjct: 159 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL- 217

Query: 154 QKYQGAPLSSLYGASHLLRLFVRIGSVLAYTGLTER 189
                    SLY    +L   +        +GL   
Sbjct: 218 ---------SLYADERILSAAIAT-RTERRSGLAAL 243


>d1uhga_ e.1.1.1 (A:) Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]}
          Length = 385

 Score = 25.2 bits (54), Expect = 6.2
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 115 GAKGKTVTEMVAGLKEYFNVMLGSQLLYQAERRQYSQVMQKYQ 157
           GAK  T T++   ++  F+ + G     +A+      V    +
Sbjct: 44  GAKDSTRTQINKVVR--FDKLPGFGDSIEAQCGTSVNVHSSLR 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 732,462
Number of extensions: 30617
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 17
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)