Query psy1582
Match_columns 129
No_of_seqs 127 out of 1016
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 22:09:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0554 GlpK Glycerol kinase [ 99.9 5.5E-28 1.2E-32 188.0 9.4 113 12-128 4-116 (499)
2 PF00370 FGGY_N: FGGY family o 99.9 2.2E-26 4.8E-31 168.5 11.7 110 14-128 1-110 (245)
3 PRK00047 glpK glycerol kinase; 99.9 3.4E-26 7.3E-31 182.4 11.8 116 9-128 1-116 (498)
4 PLN02295 glycerol kinase 99.9 1.1E-25 2.3E-30 180.2 11.3 110 14-128 1-115 (512)
5 COG1070 XylB Sugar (pentulose 99.9 1.7E-25 3.6E-30 178.8 10.5 114 10-128 1-115 (502)
6 PTZ00294 glycerol kinase-like 99.9 4E-25 8.6E-30 176.6 12.4 112 13-128 2-115 (504)
7 PRK04123 ribulokinase; Provisi 99.9 9.2E-25 2E-29 175.9 11.5 112 12-128 2-131 (548)
8 PRK10331 L-fuculokinase; Provi 99.9 1.9E-24 4E-29 171.4 10.6 109 13-128 2-112 (470)
9 PRK15027 xylulokinase; Provisi 99.9 1.7E-24 3.6E-29 172.2 10.1 108 14-128 1-108 (484)
10 TIGR01311 glycerol_kin glycero 99.9 4E-24 8.8E-29 170.3 11.8 112 13-128 1-112 (493)
11 TIGR01234 L-ribulokinase L-rib 99.9 2.7E-24 5.9E-29 172.9 10.2 110 14-128 2-134 (536)
12 TIGR02628 fuculo_kin_coli L-fu 99.9 4.5E-24 9.7E-29 169.1 10.6 108 14-128 2-111 (465)
13 TIGR01315 5C_CHO_kinase FGGY-f 99.9 6E-24 1.3E-28 171.1 9.8 109 14-128 1-118 (541)
14 TIGR01314 gntK_FGGY gluconate 99.9 1.2E-23 2.5E-28 168.1 11.2 109 14-128 1-109 (505)
15 PRK10939 autoinducer-2 (AI-2) 99.9 2.8E-23 6E-28 166.5 11.4 110 13-128 3-114 (520)
16 PLN02669 xylulokinase 99.9 3.6E-22 7.9E-27 161.3 10.4 114 10-128 5-150 (556)
17 KOG2517|consensus 99.8 9.1E-21 2E-25 149.9 11.3 118 12-129 5-122 (516)
18 TIGR01312 XylB D-xylulose kina 99.8 7.4E-21 1.6E-25 150.7 9.4 107 16-127 1-107 (481)
19 TIGR02627 rhamnulo_kin rhamnul 99.8 2E-20 4.4E-25 147.8 8.2 104 16-128 1-108 (454)
20 COG1069 AraB Ribulose kinase [ 99.8 1.1E-19 2.5E-24 143.4 8.0 114 11-129 1-123 (544)
21 PRK10640 rhaB rhamnulokinase; 99.3 7.7E-12 1.7E-16 99.7 8.2 72 49-128 25-96 (471)
22 TIGR00241 CoA_E_activ CoA-subs 99.1 3.2E-10 6.9E-15 83.5 7.3 70 14-102 1-70 (248)
23 PRK09698 D-allose kinase; Prov 99.0 3.3E-09 7.2E-14 79.8 9.8 90 11-120 2-95 (302)
24 PRK13311 N-acetyl-D-glucosamin 99.0 2.5E-09 5.5E-14 78.9 8.2 86 14-120 1-87 (256)
25 TIGR00744 ROK_glcA_fam ROK fam 99.0 2.6E-09 5.7E-14 80.8 8.2 87 16-120 1-88 (318)
26 PRK13310 N-acetyl-D-glucosamin 98.9 5.6E-09 1.2E-13 78.7 7.9 86 14-120 1-87 (303)
27 PRK09557 fructokinase; Reviewe 98.9 6.4E-09 1.4E-13 78.3 7.8 82 14-116 1-82 (301)
28 KOG2531|consensus 98.9 3.8E-09 8.2E-14 82.9 6.3 111 12-128 8-150 (545)
29 COG1940 NagC Transcriptional r 98.9 1.3E-08 2.7E-13 77.0 9.1 92 10-118 3-94 (314)
30 PF00480 ROK: ROK family; Int 98.8 4.7E-08 1E-12 68.1 9.2 82 17-121 1-83 (179)
31 PRK12408 glucokinase; Provisio 98.7 3.2E-08 6.9E-13 76.0 5.4 93 7-128 10-108 (336)
32 PRK05082 N-acetylmannosamine k 98.5 3.2E-07 7E-12 68.7 7.2 84 15-121 3-88 (291)
33 COG2971 Predicted N-acetylgluc 98.5 5.5E-07 1.2E-11 67.8 8.2 72 10-92 2-74 (301)
34 PRK00292 glk glucokinase; Prov 98.5 1.8E-07 3.8E-12 71.0 5.5 89 13-128 2-90 (316)
35 smart00732 YqgFc Likely ribonu 98.4 1.5E-06 3.2E-11 54.9 7.3 60 14-96 2-61 (99)
36 PF01869 BcrAD_BadFG: BadF/Bad 98.3 1.8E-06 3.9E-11 64.1 6.2 70 16-95 1-70 (271)
37 PRK14101 bifunctional glucokin 98.3 1.1E-06 2.3E-11 72.8 4.4 88 13-128 18-105 (638)
38 TIGR02261 benz_CoA_red_D benzo 98.3 9.5E-06 2.1E-10 60.4 9.0 72 14-99 2-74 (262)
39 TIGR03192 benz_CoA_bzdQ benzoy 98.3 9.3E-06 2E-10 61.3 9.1 70 13-100 32-101 (293)
40 TIGR03286 methan_mark_15 putat 98.2 1.5E-05 3.4E-10 62.4 9.0 72 11-101 142-213 (404)
41 PF05378 Hydant_A_N: Hydantoin 98.0 2.4E-05 5.1E-10 55.1 6.6 67 16-98 2-68 (176)
42 PRK13321 pantothenate kinase; 98.0 3.7E-05 8E-10 57.0 7.8 64 15-95 2-65 (256)
43 COG1924 Activator of 2-hydroxy 98.0 5.3E-05 1.1E-09 58.7 8.1 73 10-101 132-204 (396)
44 PRK13318 pantothenate kinase; 98.0 5.3E-05 1.1E-09 56.2 8.0 64 15-95 2-65 (258)
45 PF14574 DUF4445: Domain of un 97.9 4.3E-05 9.4E-10 60.3 6.7 81 14-94 2-91 (412)
46 PF00349 Hexokinase_1: Hexokin 97.8 0.00028 6.1E-09 50.9 8.9 83 5-95 56-140 (206)
47 TIGR02259 benz_CoA_red_A benzo 97.5 0.00023 4.9E-09 55.9 6.0 33 12-45 1-33 (432)
48 KOG1794|consensus 97.4 0.0013 2.8E-08 49.7 8.6 75 12-96 2-77 (336)
49 PLN02914 hexokinase 97.4 0.002 4.3E-08 52.1 9.6 66 6-76 89-157 (490)
50 smart00842 FtsA Cell division 97.3 0.0046 1E-07 43.6 10.1 74 15-95 1-77 (187)
51 TIGR00749 glk glucokinase, pro 97.3 0.00034 7.3E-09 53.2 4.4 24 16-40 1-24 (316)
52 PRK09472 ftsA cell division pr 97.3 0.0065 1.4E-07 48.1 11.5 77 11-94 6-85 (420)
53 PLN02405 hexokinase 97.2 0.0046 9.9E-08 50.1 10.2 67 5-76 88-157 (497)
54 PLN02596 hexokinase-like 97.2 0.003 6.5E-08 51.0 9.1 66 6-76 90-158 (490)
55 TIGR02707 butyr_kinase butyrat 97.1 0.003 6.6E-08 49.0 7.7 67 15-92 2-71 (351)
56 PTZ00288 glucokinase 1; Provis 97.1 0.0068 1.5E-07 48.0 9.7 57 12-75 25-83 (405)
57 TIGR01174 ftsA cell division p 97.0 0.017 3.7E-07 44.8 11.3 74 14-94 1-77 (371)
58 PRK15080 ethanolamine utilizat 97.0 0.017 3.7E-07 43.1 10.8 57 11-71 22-78 (267)
59 PLN02362 hexokinase 97.0 0.0085 1.8E-07 48.7 9.6 65 5-76 88-157 (509)
60 PTZ00107 hexokinase; Provision 96.9 0.011 2.3E-07 47.6 9.7 69 6-76 68-143 (464)
61 PF13941 MutL: MutL protein 96.9 0.0072 1.6E-07 48.5 8.1 72 15-99 2-77 (457)
62 PRK13317 pantothenate kinase; 96.8 0.007 1.5E-07 45.5 7.3 27 13-40 2-28 (277)
63 PRK13324 pantothenate kinase; 96.3 0.032 6.9E-07 41.6 7.9 66 15-96 2-67 (258)
64 COG0849 ftsA Cell division ATP 96.3 0.084 1.8E-06 42.0 10.6 68 14-85 7-75 (418)
65 TIGR03123 one_C_unchar_1 proba 95.8 0.014 2.9E-07 44.9 4.2 30 16-46 1-30 (318)
66 PF02685 Glucokinase: Glucokin 95.7 0.062 1.3E-06 41.2 7.2 21 16-37 1-21 (316)
67 TIGR00555 panK_eukar pantothen 95.7 0.11 2.3E-06 39.3 8.3 25 15-40 2-26 (279)
68 PRK09604 UGMP family protein; 95.6 0.12 2.6E-06 39.8 8.8 81 14-99 2-84 (332)
69 PTZ00340 O-sialoglycoprotein e 95.6 0.12 2.6E-06 40.2 8.5 79 14-99 2-82 (345)
70 PRK03011 butyrate kinase; Prov 95.5 0.027 5.8E-07 43.9 4.8 70 14-91 3-72 (358)
71 COG5026 Hexokinase [Carbohydra 95.4 0.07 1.5E-06 42.5 6.9 61 12-76 74-136 (466)
72 TIGR01175 pilM type IV pilus a 95.4 0.21 4.6E-06 38.2 9.4 74 13-95 3-78 (348)
73 KOG1369|consensus 95.4 0.13 2.8E-06 41.5 8.3 95 13-120 86-183 (474)
74 PLN02666 5-oxoprolinase 95.3 0.079 1.7E-06 47.5 7.6 78 12-98 8-88 (1275)
75 PRK13320 pantothenate kinase; 95.3 0.19 4.2E-06 37.1 8.5 26 14-41 3-28 (244)
76 COG4820 EutJ Ethanolamine util 95.0 0.16 3.4E-06 37.0 7.1 30 11-41 27-56 (277)
77 PRK13331 pantothenate kinase; 95.0 0.14 2.9E-06 38.2 7.1 61 13-97 7-67 (251)
78 TIGR02529 EutJ ethanolamine ut 95.0 0.21 4.6E-06 36.6 8.0 50 17-70 1-50 (239)
79 PRK13326 pantothenate kinase; 94.8 0.18 3.8E-06 37.7 7.1 28 14-43 7-34 (262)
80 PRK09605 bifunctional UGMP fam 94.8 0.22 4.7E-06 40.6 8.2 79 14-99 2-81 (535)
81 TIGR03725 bact_YeaZ universal 94.6 0.28 6.1E-06 35.0 7.6 65 15-98 1-65 (202)
82 PF11104 PilM_2: Type IV pilus 94.6 0.24 5.3E-06 38.0 7.8 69 17-95 1-72 (340)
83 COG1214 Inactive homolog of me 94.4 0.15 3.3E-06 37.1 6.0 68 14-98 2-69 (220)
84 TIGR00329 gcp_kae1 metallohydr 94.4 0.26 5.7E-06 37.4 7.4 79 16-99 1-81 (305)
85 TIGR03723 bact_gcp putative gl 94.3 0.4 8.7E-06 36.7 8.3 80 15-99 1-82 (314)
86 TIGR01319 glmL_fam conserved h 94.3 0.21 4.6E-06 40.2 7.0 29 18-46 1-29 (463)
87 PRK10854 exopolyphosphatase; P 94.3 0.47 1E-05 38.7 9.2 80 12-96 10-93 (513)
88 TIGR00671 baf pantothenate kin 94.1 0.22 4.7E-06 36.8 6.3 27 16-44 2-28 (243)
89 COG0145 HyuA N-methylhydantoin 94.0 0.29 6.3E-06 41.3 7.5 32 13-45 2-33 (674)
90 COG4972 PilM Tfp pilus assembl 93.6 0.22 4.8E-06 38.5 5.6 64 14-86 11-77 (354)
91 COG3734 DgoK 2-keto-3-deoxy-ga 93.5 0.16 3.5E-06 38.4 4.6 33 10-43 2-34 (306)
92 TIGR03706 exo_poly_only exopol 93.1 0.49 1.1E-05 35.8 6.9 77 15-96 2-82 (300)
93 TIGR03722 arch_KAE1 universal 93.1 0.59 1.3E-05 35.8 7.4 76 16-98 1-77 (322)
94 COG0837 Glk Glucokinase [Carbo 93.0 0.32 7E-06 37.1 5.6 28 12-40 6-33 (320)
95 PF14450 FtsA: Cell division p 92.8 0.89 1.9E-05 29.6 7.1 29 15-45 1-29 (120)
96 COG3894 Uncharacterized metal- 92.6 0.22 4.7E-06 40.6 4.5 32 11-42 162-193 (614)
97 PRK14878 UGMP family protein; 92.2 0.86 1.9E-05 35.0 7.2 76 16-99 1-77 (323)
98 PF03309 Pan_kinase: Type III 92.0 0.85 1.8E-05 32.6 6.6 23 15-39 1-23 (206)
99 COG0248 GppA Exopolyphosphatas 92.0 0.33 7E-06 39.6 4.8 78 13-96 3-85 (492)
100 COG1521 Pantothenate kinase ty 91.9 0.72 1.6E-05 34.3 6.3 29 15-45 2-30 (251)
101 COG1548 Predicted transcriptio 91.8 0.58 1.3E-05 35.2 5.6 20 13-32 3-22 (330)
102 COG0533 QRI7 Metal-dependent p 91.6 0.93 2E-05 35.2 6.7 82 14-101 2-85 (342)
103 PF00871 Acetate_kinase: Aceto 91.6 0.43 9.3E-06 37.7 5.1 30 15-44 2-31 (388)
104 PF01548 DEDD_Tnp_IS110: Trans 91.5 0.7 1.5E-05 30.7 5.4 30 15-45 1-30 (144)
105 PRK11031 guanosine pentaphosph 90.8 1.9 4.2E-05 35.0 8.2 80 12-96 5-88 (496)
106 CHL00094 dnaK heat shock prote 90.4 0.31 6.7E-06 40.6 3.4 20 13-32 2-21 (621)
107 COG4020 Uncharacterized protei 89.8 3.3 7.3E-05 31.2 8.0 27 12-39 2-28 (332)
108 PF14639 YqgF: Holliday-juncti 89.7 1.4 3.1E-05 30.2 5.7 30 13-43 5-38 (150)
109 PRK13410 molecular chaperone D 89.7 0.43 9.3E-06 40.2 3.7 20 13-32 2-21 (668)
110 PRK13411 molecular chaperone D 89.7 0.43 9.3E-06 40.1 3.7 19 14-32 3-21 (653)
111 PF02075 RuvC: Crossover junct 89.1 2.8 6.1E-05 28.5 6.9 53 15-76 1-56 (149)
112 PRK00290 dnaK molecular chaper 88.9 0.4 8.6E-06 40.0 3.0 19 14-32 3-21 (627)
113 PF07318 DUF1464: Protein of u 88.7 0.6 1.3E-05 36.3 3.6 40 17-64 1-40 (343)
114 PRK00039 ruvC Holliday junctio 88.7 5.6 0.00012 27.6 8.2 23 13-36 2-24 (164)
115 PRK07058 acetate kinase; Provi 88.5 1 2.3E-05 35.6 4.9 32 10-41 1-34 (396)
116 TIGR02350 prok_dnaK chaperone 88.2 0.55 1.2E-05 38.8 3.3 19 14-32 1-19 (595)
117 PF04312 DUF460: Protein of un 88.1 2.7 5.9E-05 28.4 6.0 33 11-45 30-62 (138)
118 PF03652 UPF0081: Uncharacteri 88.0 3.3 7.2E-05 27.7 6.5 22 14-36 2-23 (135)
119 PTZ00009 heat shock 70 kDa pro 87.9 0.57 1.2E-05 39.3 3.3 22 11-32 2-23 (653)
120 PTZ00186 heat shock 70 kDa pre 87.6 0.81 1.8E-05 38.6 4.0 20 13-32 27-46 (657)
121 PRK12440 acetate kinase; Revie 87.3 1.5 3.2E-05 34.8 5.1 33 10-42 1-33 (397)
122 PF00012 HSP70: Hsp70 protein; 86.9 0.56 1.2E-05 38.5 2.7 18 15-32 1-18 (602)
123 KOG2707|consensus 86.8 2.2 4.8E-05 33.4 5.6 82 15-101 34-117 (405)
124 PRK00976 hypothetical protein; 86.7 4.1 8.9E-05 31.6 7.1 19 14-32 2-20 (326)
125 PRK05183 hscA chaperone protei 86.6 0.79 1.7E-05 38.2 3.4 21 12-32 18-38 (616)
126 COG0443 DnaK Molecular chapero 86.4 0.89 1.9E-05 37.8 3.6 20 13-32 5-24 (579)
127 PF06277 EutA: Ethanolamine ut 85.8 3 6.6E-05 33.8 6.2 16 14-29 4-19 (473)
128 COG2183 Tex Transcriptional ac 84.6 4.6 9.9E-05 34.7 6.9 67 12-96 329-396 (780)
129 PTZ00400 DnaK-type molecular c 84.2 1.1 2.3E-05 37.9 3.1 19 14-32 42-60 (663)
130 PF07736 CM_1: Chorismate muta 84.2 2.8 6E-05 27.7 4.4 36 57-95 13-48 (118)
131 PRK13322 pantothenate kinase; 83.6 1.2 2.6E-05 32.9 2.9 24 15-39 2-25 (246)
132 cd00529 RuvC_resolvase Hollida 83.4 12 0.00025 25.5 7.8 53 15-76 2-57 (154)
133 TIGR00016 ackA acetate kinase. 83.3 2.9 6.2E-05 33.3 5.0 29 13-41 4-33 (404)
134 PRK01433 hscA chaperone protei 83.2 1.5 3.3E-05 36.5 3.6 19 13-31 19-37 (595)
135 PLN03184 chloroplast Hsp70; Pr 83.1 1.5 3.3E-05 37.0 3.6 19 14-32 40-58 (673)
136 PF05035 DGOK: 2-keto-3-deoxy- 82.1 1.8 3.9E-05 32.9 3.4 27 19-46 1-27 (287)
137 cd02185 AroH Chorismate mutase 81.9 2.8 6.1E-05 27.6 3.8 36 57-95 13-48 (117)
138 TIGR01796 CM_mono_aroH monofun 81.4 3 6.5E-05 27.5 3.8 37 57-96 13-49 (117)
139 PRK11678 putative chaperone; P 81.4 1.7 3.7E-05 35.0 3.2 18 15-32 2-19 (450)
140 PRK10719 eutA reactivating fac 81.0 5.5 0.00012 32.4 5.9 17 13-29 6-22 (475)
141 PRK00109 Holliday junction res 81.0 8.2 0.00018 25.9 6.0 24 13-37 4-27 (138)
142 TIGR01991 HscA Fe-S protein as 80.8 1.5 3.1E-05 36.6 2.7 18 15-32 1-18 (599)
143 PRK07157 acetate kinase; Provi 80.4 3.9 8.4E-05 32.6 4.8 28 15-42 5-32 (400)
144 TIGR00904 mreB cell shape dete 78.8 1.8 4E-05 33.0 2.5 15 16-30 5-19 (333)
145 TIGR03281 methan_mark_12 putat 78.7 1.9 4.2E-05 33.1 2.5 23 15-38 1-23 (326)
146 PRK13328 pantothenate kinase; 78.2 2.8 6E-05 31.2 3.3 28 15-43 3-30 (255)
147 PRK12397 propionate kinase; Re 78.1 5.1 0.00011 31.9 4.8 29 14-42 4-32 (404)
148 KOG2708|consensus 77.6 15 0.00032 27.5 6.7 76 13-94 2-78 (336)
149 TIGR01865 cas_Csn1 CRISPR-asso 77.5 2.3 5E-05 36.8 3.0 22 13-35 1-22 (805)
150 PF08735 DUF1786: Putative pyr 77.2 11 0.00024 28.2 6.1 43 13-66 167-209 (254)
151 PRK12379 propionate/acetate ki 75.8 7.6 0.00017 30.9 5.2 31 12-42 4-34 (396)
152 COG4012 Uncharacterized protei 75.4 13 0.00027 28.4 5.9 44 14-68 228-271 (342)
153 KOG1386|consensus 75.3 14 0.0003 30.3 6.6 65 12-76 8-77 (501)
154 PRK13928 rod shape-determining 74.6 2.9 6.4E-05 31.9 2.6 15 16-30 6-20 (336)
155 PRK11031 guanosine pentaphosph 74.3 13 0.00028 30.3 6.4 31 15-47 134-164 (496)
156 TIGR03123 one_C_unchar_1 proba 73.7 4.3 9.4E-05 31.3 3.3 26 13-40 128-153 (318)
157 PHA02533 17 large terminase pr 73.2 39 0.00084 28.0 8.9 65 11-99 313-384 (534)
158 TIGR03706 exo_poly_only exopol 72.3 12 0.00027 28.2 5.5 30 16-47 128-157 (300)
159 PF04848 Pox_A22: Poxvirus A22 71.6 13 0.00029 25.3 4.9 24 14-38 2-25 (143)
160 PF12864 DUF3822: Protein of u 68.8 31 0.00066 25.4 6.8 80 11-103 16-95 (253)
161 PRK13325 bifunctional biotin-- 67.9 11 0.00025 31.5 4.8 27 13-41 338-364 (592)
162 COG2441 Predicted butyrate kin 67.3 12 0.00026 28.7 4.4 45 16-67 1-45 (374)
163 TIGR00250 RNAse_H_YqgF RNAse H 67.0 22 0.00048 23.6 5.2 20 16-36 1-20 (130)
164 PF01968 Hydantoinase_A: Hydan 67.0 6.8 0.00015 29.6 3.1 23 14-38 78-100 (290)
165 PRK13929 rod-share determining 66.9 6.3 0.00014 30.2 3.0 13 15-27 6-18 (335)
166 PRK13930 rod shape-determining 66.8 4.8 0.0001 30.6 2.3 16 16-31 11-26 (335)
167 PF06723 MreB_Mbl: MreB/Mbl pr 66.7 3.5 7.6E-05 31.9 1.5 14 15-28 3-16 (326)
168 PF02541 Ppx-GppA: Ppx/GppA ph 65.3 11 0.00025 28.0 4.0 33 13-47 112-144 (285)
169 COG0282 ackA Acetate kinase [E 65.0 6.2 0.00013 31.3 2.5 28 14-41 2-29 (396)
170 PRK13927 rod shape-determining 63.4 6.4 0.00014 29.9 2.4 15 15-29 7-21 (334)
171 PRK00180 acetate kinase A/prop 63.3 15 0.00031 29.4 4.4 28 15-42 3-30 (402)
172 PF06277 EutA: Ethanolamine ut 62.8 15 0.00031 30.0 4.3 31 12-44 142-172 (473)
173 PRK09585 anmK anhydro-N-acetyl 61.9 13 0.00029 29.2 3.9 78 13-95 2-99 (365)
174 COG0816 Predicted endonuclease 61.3 13 0.00028 25.3 3.3 22 13-35 2-23 (141)
175 COG0145 HyuA N-methylhydantoin 60.8 8.6 0.00019 32.7 2.8 17 15-31 280-296 (674)
176 PRK10854 exopolyphosphatase; P 60.3 53 0.0012 26.9 7.3 30 15-46 139-168 (513)
177 PRK13329 pantothenate kinase; 60.0 7.6 0.00017 28.8 2.2 17 15-31 3-19 (249)
178 KOG0100|consensus 59.0 14 0.00031 29.9 3.6 20 12-31 35-54 (663)
179 COG4401 AroH Chorismate mutase 58.3 32 0.00069 22.6 4.5 36 57-95 15-50 (125)
180 PRK10719 eutA reactivating fac 57.8 18 0.00038 29.6 4.0 33 12-46 145-177 (475)
181 KOG1385|consensus 56.7 20 0.00043 28.9 4.0 61 12-75 66-132 (453)
182 PRK13690 hypothetical protein; 55.3 35 0.00077 24.2 4.7 34 59-95 3-36 (184)
183 TIGR03192 benz_CoA_bzdQ benzoy 54.8 14 0.00031 28.2 2.9 25 14-39 126-150 (293)
184 TIGR00228 ruvC crossover junct 53.4 73 0.0016 22.0 7.3 55 15-76 1-55 (156)
185 PLN02920 pantothenate kinase 1 52.9 61 0.0013 25.9 6.2 19 14-32 19-37 (398)
186 COG3490 Uncharacterized protei 52.8 98 0.0021 24.1 7.0 83 20-111 223-316 (366)
187 TIGR02261 benz_CoA_red_D benzo 52.3 17 0.00037 27.3 3.0 25 14-39 98-122 (262)
188 KOG0101|consensus 51.9 21 0.00045 30.2 3.7 29 11-39 5-33 (620)
189 PF03630 Fumble: Fumble ; Int 51.1 14 0.0003 28.8 2.4 18 15-32 2-19 (341)
190 COG3513 Predicted CRISPR-assoc 49.9 18 0.00039 31.7 3.0 23 10-32 1-23 (1088)
191 PF01150 GDA1_CD39: GDA1/CD39 48.4 16 0.00035 29.0 2.5 21 12-32 7-27 (434)
192 PF13756 Stimulus_sens_1: Stim 48.3 57 0.0012 21.0 4.7 24 21-45 15-38 (112)
193 COG2433 Uncharacterized conser 47.0 52 0.0011 27.8 5.1 29 13-43 244-272 (652)
194 COG2377 Predicted molecular ch 46.0 13 0.00028 29.3 1.5 81 10-95 2-101 (371)
195 KOG0104|consensus 45.9 15 0.00033 31.8 2.0 20 13-32 22-41 (902)
196 PRK15080 ethanolamine utilizat 44.4 41 0.00088 25.0 4.0 29 15-45 137-165 (267)
197 PF07066 DUF3882: Lactococcus 44.4 1E+02 0.0023 21.2 7.6 27 14-42 3-34 (159)
198 COG0248 GppA Exopolyphosphatas 43.7 79 0.0017 26.0 5.8 32 13-46 129-160 (492)
199 PF06723 MreB_Mbl: MreB/Mbl pr 43.3 1.4E+02 0.0031 23.1 6.9 29 15-45 147-175 (326)
200 PF14397 ATPgrasp_ST: Sugar-tr 43.2 1.3E+02 0.0028 22.6 6.6 70 12-107 175-248 (285)
201 PLN02666 5-oxoprolinase 42.0 38 0.00082 31.2 4.0 18 14-31 315-332 (1275)
202 PRK09472 ftsA cell division pr 41.2 59 0.0013 25.8 4.7 31 13-45 204-234 (420)
203 PF13290 CHB_HEX_C_1: Chitobia 41.0 31 0.00068 20.1 2.4 19 16-36 43-61 (67)
204 PF03975 CheD: CheD chemotacti 40.7 63 0.0014 20.8 4.0 28 14-41 79-106 (114)
205 PRK13917 plasmid segregation p 40.7 28 0.00061 26.9 2.7 18 13-30 2-19 (344)
206 PF11104 PilM_2: Type IV pilus 40.7 65 0.0014 24.6 4.7 32 13-46 180-211 (340)
207 COG1647 Esterase/lipase [Gener 40.6 54 0.0012 24.3 3.9 35 54-94 60-94 (243)
208 PF06406 StbA: StbA protein; 40.3 79 0.0017 24.0 5.1 27 13-40 164-190 (318)
209 COG5146 PanK Pantothenate kina 39.8 1.1E+02 0.0024 23.2 5.5 17 13-29 18-34 (342)
210 COG0081 RplA Ribosomal protein 36.6 1.1E+02 0.0023 22.7 4.9 50 53-103 177-226 (228)
211 TIGR02259 benz_CoA_red_A benzo 36.3 40 0.00086 27.2 2.9 25 13-38 267-291 (432)
212 PRK13487 chemoreceptor glutami 36.2 73 0.0016 23.0 4.0 27 14-40 142-168 (201)
213 PRK13494 chemoreceptor glutami 35.5 90 0.0019 21.7 4.3 27 14-40 129-155 (163)
214 smart00268 ACTIN Actin. ACTIN 35.1 34 0.00075 26.3 2.4 18 15-32 3-20 (373)
215 PF13752 DUF4165: Domain of un 35.0 75 0.0016 21.2 3.6 28 20-48 93-120 (124)
216 TIGR03739 PRTRC_D PRTRC system 33.7 80 0.0017 24.0 4.2 28 12-41 166-193 (320)
217 PF00814 Peptidase_M22: Glycop 33.4 45 0.00097 24.9 2.7 36 60-99 27-62 (268)
218 COG0400 Predicted esterase [Ge 33.3 1E+02 0.0022 22.2 4.5 27 65-94 82-108 (207)
219 TIGR01175 pilM type IV pilus a 33.2 1E+02 0.0022 23.4 4.7 30 15-46 190-219 (348)
220 PF01011 PQQ: PQQ enzyme repea 31.9 74 0.0016 15.9 3.1 21 91-111 4-24 (38)
221 TIGR03285 methan_mark_14 putat 31.9 2.7E+02 0.0059 22.4 9.1 78 14-94 3-94 (445)
222 PRK13491 chemoreceptor glutami 31.8 1.1E+02 0.0023 22.2 4.3 27 14-40 130-156 (199)
223 PRK13490 chemoreceptor glutami 31.7 1.1E+02 0.0024 21.1 4.3 27 14-40 127-153 (162)
224 PRK13498 chemoreceptor glutami 31.6 1.1E+02 0.0024 21.3 4.3 28 14-41 130-157 (167)
225 PRK13495 chemoreceptor glutami 31.4 1.1E+02 0.0025 21.1 4.3 27 14-40 120-146 (159)
226 PF08841 DDR: Diol dehydratase 31.2 93 0.002 24.0 4.0 26 15-41 136-161 (332)
227 cd00012 ACTIN Actin; An ubiqui 31.1 42 0.00091 25.8 2.3 17 16-32 2-18 (371)
228 PRK13327 pantothenate kinase; 30.9 35 0.00075 25.2 1.7 17 16-32 4-20 (242)
229 cd00012 ACTIN Actin; An ubiqui 30.5 1.5E+02 0.0032 22.8 5.2 27 13-41 143-169 (371)
230 PRK13497 chemoreceptor glutami 30.5 1.2E+02 0.0026 21.5 4.3 27 14-40 127-153 (184)
231 PF11141 DUF2914: Protein of u 29.9 1.1E+02 0.0024 17.7 3.5 19 26-45 47-65 (66)
232 smart00268 ACTIN Actin. ACTIN 29.8 1.4E+02 0.0029 23.0 4.9 29 13-43 143-171 (373)
233 KOG0930|consensus 29.6 81 0.0018 24.3 3.5 46 21-71 331-376 (395)
234 PTZ00225 60S ribosomal protein 29.5 1.4E+02 0.0031 21.6 4.7 41 53-96 167-207 (214)
235 COG2236 Predicted phosphoribos 29.3 84 0.0018 22.5 3.4 38 63-100 9-46 (192)
236 PRK13488 chemoreceptor glutami 28.8 1.4E+02 0.0029 20.6 4.3 26 15-40 123-148 (157)
237 PF14239 RRXRR: RRXRR protein 28.8 2.1E+02 0.0046 20.2 5.5 35 7-43 45-79 (176)
238 PTZ00249 variable surface prot 28.7 79 0.0017 26.1 3.5 65 56-129 416-480 (516)
239 PTZ00452 actin; Provisional 28.1 68 0.0015 25.1 3.0 18 15-32 7-24 (375)
240 COG0849 ftsA Cell division ATP 27.8 1.3E+02 0.0029 24.2 4.6 30 15-46 205-234 (418)
241 KOG2201|consensus 27.8 59 0.0013 25.5 2.5 20 13-32 22-41 (371)
242 PRK13917 plasmid segregation p 27.4 2E+02 0.0044 22.2 5.5 28 13-42 185-212 (344)
243 PRK04203 rpl1P 50S ribosomal p 27.4 1.9E+02 0.0042 20.8 5.1 39 55-96 169-207 (215)
244 PRK11617 endonuclease V; Provi 26.7 2.2E+02 0.0047 21.0 5.2 41 13-53 30-77 (224)
245 TIGR02529 EutJ ethanolamine ut 26.5 1.5E+02 0.0032 21.6 4.4 29 15-45 110-138 (239)
246 TIGR01174 ftsA cell division p 25.7 1.4E+02 0.0031 23.0 4.4 30 13-44 196-225 (371)
247 PTZ00280 Actin-related protein 25.4 76 0.0017 25.0 2.9 18 15-32 6-23 (414)
248 PF04260 DUF436: Protein of un 25.3 1.1E+02 0.0025 21.5 3.3 27 66-95 3-29 (172)
249 PRK13493 chemoreceptor glutami 25.0 1.5E+02 0.0032 21.6 4.0 27 14-40 154-180 (213)
250 PTZ00445 p36-lilke protein; Pr 24.3 42 0.00091 24.6 1.1 60 23-95 41-102 (219)
251 PF00022 Actin: Actin; InterP 24.0 69 0.0015 24.7 2.4 19 14-32 5-23 (393)
252 PRK13489 chemoreceptor glutami 23.9 1.7E+02 0.0037 21.7 4.2 27 14-40 140-166 (233)
253 PTZ00029 60S ribosomal protein 22.6 2.2E+02 0.0047 20.6 4.6 41 53-96 169-209 (216)
254 PF00012 HSP70: Hsp70 protein; 22.6 4.2E+02 0.0092 21.7 6.8 24 12-35 187-210 (602)
255 COG3260 Ni,Fe-hydrogenase III 22.4 2.1E+02 0.0045 19.6 4.0 59 16-76 79-137 (148)
256 PF02801 Ketoacyl-synt_C: Beta 22.3 1.1E+02 0.0025 19.4 2.8 28 65-95 26-53 (119)
257 PF09887 DUF2114: Uncharacteri 22.3 4.2E+02 0.0092 21.4 9.6 78 13-93 4-96 (448)
258 PTZ00466 actin-like protein; P 22.1 89 0.0019 24.5 2.7 18 15-32 14-31 (380)
259 COG1515 Nfi Deoxyinosine 3'end 21.8 2.7E+02 0.0059 20.3 4.8 43 12-54 28-76 (212)
260 CHL00129 rpl1 ribosomal protei 21.8 2.8E+02 0.006 20.4 5.0 51 53-104 175-225 (229)
261 PF13860 FlgD_ig: FlgD Ig-like 21.8 1.9E+02 0.0041 17.1 4.9 26 17-43 19-44 (81)
262 PHA02535 P terminase ATPase su 21.4 5.1E+02 0.011 22.0 8.6 66 12-99 402-473 (581)
263 cd06559 Endonuclease_V Endonuc 20.7 3.3E+02 0.0072 19.6 8.8 56 12-76 25-89 (208)
264 PHA02754 hypothetical protein; 20.3 1.9E+02 0.0042 16.6 5.1 49 65-118 15-63 (67)
No 1
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=99.95 E-value=5.5e-28 Score=188.00 Aligned_cols=113 Identities=35% Similarity=0.564 Sum_probs=108.8
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
++|+++||.|||++|+++||. +|++++..+.++...+|++||+|+||+++|..+..++++++.+ +++.+.+|.+||
T Consensus 4 ~~yIlAiDqGTTssRaivfd~-~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~---~~i~~~~iaaIG 79 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAK---AGIKPGEIAAIG 79 (499)
T ss_pred ccEEEEEecCCcceeEEEECC-CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCccceEEEE
Confidence 589999999999999999999 9999999999999999999999999999999999999999987 799999999999
Q ss_pred EecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 92 ITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 92 is~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
|+.|+.+++.||++||+|++|+|.|+|+|+...|+++
T Consensus 80 ITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L 116 (499)
T COG0554 80 ITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEEL 116 (499)
T ss_pred eeccceeEEEEeCCCCCCcccceeeeccchHHHHHHH
Confidence 9999999999999999999999999999999999875
No 2
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=99.94 E-value=2.2e-26 Score=168.47 Aligned_cols=110 Identities=24% Similarity=0.347 Sum_probs=99.6
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
|+||||+|||++|++++|. +|+++...+.+++...+.+|+.++||++||+.+.+++++++++ ++..+.+|.+||++
T Consensus 1 y~lgiDiGTts~K~~l~d~-~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~aI~is 76 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE-DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ---AGIDPEQIKAIGIS 76 (245)
T ss_dssp EEEEEEECSSEEEEEEEET-TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH---CTSCGGGEEEEEEE
T ss_pred CEEEEEEcccceEEEEEeC-CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhh---cCcccceeEEEEec
Confidence 7899999999999999998 9999999999999888889999999999999999999999987 57778899999999
Q ss_pred cCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 94 NQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 94 ~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
+++++++++|++ |+|++|+++|.|.|+..+++++
T Consensus 77 ~~~~~~v~~D~~-~~pl~~~i~w~D~R~~~~~~~l 110 (245)
T PF00370_consen 77 GQGHGLVLLDKD-GKPLRPAILWMDTRAAEEAEEL 110 (245)
T ss_dssp E-SSEEEEEETT-SSBSSCEE-TT-CTTHHHHHHH
T ss_pred cccCCcceeccc-cccccccccccccchhhHHHHH
Confidence 999999999998 9999999999999998887654
No 3
>PRK00047 glpK glycerol kinase; Provisional
Probab=99.94 E-value=3.4e-26 Score=182.44 Aligned_cols=116 Identities=36% Similarity=0.518 Sum_probs=106.0
Q ss_pred CCCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582 9 VAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV 88 (129)
Q Consensus 9 ~~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~ 88 (129)
|+|+.|+||||+|||++|++|||. +|+++...+.+++...|.+|++|+||+.||+.+.+++++++++ ++.++++|.
T Consensus 1 ~~m~~~~lgiD~GTts~Ka~l~d~-~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~ 76 (498)
T PRK00047 1 MMMKKYILALDQGTTSSRAIIFDH-DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK---AGISPDQIA 76 (498)
T ss_pred CCccCEEEEEecCCCceEEEEECC-CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCChhHee
Confidence 456679999999999999999998 9999999999998888899999999999999999999999876 577778899
Q ss_pred EEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 89 TLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 89 ~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
+||+++++++++++|+++|+|++|++.|.|.|+.++++++
T Consensus 77 ~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l 116 (498)
T PRK00047 77 AIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEEL 116 (498)
T ss_pred EEEEecCcceEEEEECCCCcCCcccceecccchHHHHHHH
Confidence 9999999999999996559999999999999998887654
No 4
>PLN02295 glycerol kinase
Probab=99.93 E-value=1.1e-25 Score=180.15 Aligned_cols=110 Identities=37% Similarity=0.601 Sum_probs=100.9
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCC----eeE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD----IVT 89 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----I~~ 89 (129)
|+||||+|||++|++|||. +|+++.+.+.+++...|.+||+||||++||+.+.+++++++++ .+.++++ |.+
T Consensus 1 ~vlgID~GTts~Ka~l~d~-~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~~~i~~~i~a 76 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR-DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEK---AAAKGHNVDSGLKA 76 (512)
T ss_pred CEEEEecCCCceEEEEECC-CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCCccccccceEE
Confidence 6899999999999999998 9999999999999888999999999999999999999999987 4666666 799
Q ss_pred EEEecCcceEEEEe-CCCCcccccceeecCCCcccccCCC
Q psy1582 90 LGITNQRETTVVWD-LNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 90 Igis~~~~g~v~~d-~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
||+++|++|+++|| ++ |+|++|+|.|+|.|+..+++++
T Consensus 77 Ig~s~q~~~~v~~dd~~-G~pl~~~i~w~D~Ra~~~~~~l 115 (512)
T PLN02295 77 IGITNQRETTVAWSKST-GRPLYNAIVWMDSRTSSICRRL 115 (512)
T ss_pred EEEecCcceEEEEECCC-CCCcccceeccccchHHHHHHH
Confidence 99999999999995 65 9999999999999998887665
No 5
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.7e-25 Score=178.77 Aligned_cols=114 Identities=25% Similarity=0.365 Sum_probs=105.4
Q ss_pred CCCCeEEEEeCCCCceeEEEEeCCC-CcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582 10 APTQIRDRLSATYHTSRVLIISALT-QEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV 88 (129)
Q Consensus 10 ~~~~~~lgiDiGtt~ik~~l~d~~~-g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~ 88 (129)
+++.|+||||+|||++|++++|. + |++++..+.+++..+|.+||.|+||++||+.+.+++++++++ ..+++.+|.
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~-~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~---~~~~~~~I~ 76 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDE-DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE---SKIDPDAIA 76 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeC-CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHh---cccChhhce
Confidence 46789999999999999999999 7 899999999999888999999999999999999999999987 456778999
Q ss_pred EEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 89 TLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 89 ~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
+|||++|+||++++|++ |++++|++.|.|.|+..+|.++
T Consensus 77 aI~is~~~~g~vllD~~-g~~L~~~i~w~D~R~~~~~~~l 115 (502)
T COG1070 77 AIGISGQGHGLVLLDAN-GEPLRPAILWNDTRAAEEVEEL 115 (502)
T ss_pred EEEEeccccceEEECCC-CCCccccceecchhhHHHHHHH
Confidence 99999999999999998 9999999999999998877653
No 6
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=99.93 E-value=4e-25 Score=176.57 Aligned_cols=112 Identities=36% Similarity=0.496 Sum_probs=101.5
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCC--CeeEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD--DIVTL 90 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~I~~I 90 (129)
.|+||||+|||++|++|||. +|++++..+.+++...+.+|+.||||++||+.+++++++++++ .+..+. +|.+|
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~-~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~---~~~~~~~~~I~aI 77 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDE-KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKK---LREKGPSFKIKAI 77 (504)
T ss_pred cEEEEEecCCCceEEEEECC-CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCCCccCceEEE
Confidence 38999999999999999998 9999999999998888889999999999999999999999887 444455 79999
Q ss_pred EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
|+++|+++++++|.+.|+|++|++.|.|.|+.+++++|
T Consensus 78 gis~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l 115 (504)
T PTZ00294 78 GITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNEL 115 (504)
T ss_pred EeecCcceEEEEECCCCCCcccceeecchhhHHHHHHH
Confidence 99999999999987449999999999999998887654
No 7
>PRK04123 ribulokinase; Provisional
Probab=99.92 E-value=9.2e-25 Score=175.92 Aligned_cols=112 Identities=16% Similarity=0.220 Sum_probs=101.5
Q ss_pred CCeEEEEeCCCCceeEEEEe-CCCCcEEEEEEeeeccc------cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy1582 12 TQIRDRLSATYHTSRVLIIS-ALTQEEVVSHSMDISTI------SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR 84 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d-~~~g~iv~~~~~~~~~~------~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (129)
+.|+||||+|||++|++||| . +|+++.+.+.+++.. .|.+||+||||++||+.+.+++++++++ ++..+
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~ 77 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCA-TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE---AGVDP 77 (548)
T ss_pred CcEEEEEecCCCceEEEEEECC-CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH---cCCCh
Confidence 46899999999999999999 6 899999998888743 5889999999999999999999999876 57777
Q ss_pred CCeeEEEEecCcceEEEEeCCCCcccc-----------cceeecCCCcccccCCC
Q psy1582 85 DDIVTLGITNQRETTVVWDLNTGEPLY-----------NAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 85 ~~I~~Igis~~~~g~v~~d~~~g~~~~-----------~~i~w~d~r~~~~~~~~ 128 (129)
.+|.+||+++++++++++|++ |+|++ |+|.|+|.|+..+++++
T Consensus 78 ~~I~aIgis~~~~~~v~~D~~-G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l 131 (548)
T PRK04123 78 AAVVGIGVDFTGSTPAPVDAD-GTPLALLPEFAENPHAMVKLWKDHTAQEEAEEI 131 (548)
T ss_pred hhEEEEEEecccceeEEECCC-CCEeecccccccCcccceeEeccCCHHHHHHHH
Confidence 889999999999999999997 99997 89999999998888765
No 8
>PRK10331 L-fuculokinase; Provisional
Probab=99.91 E-value=1.9e-24 Score=171.42 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=97.8
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeec--cccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~--~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I 90 (129)
+|+||||+|||++|+++||. +|++++..+.+++ ...+.+|+.||||++||+.+.+++++++++ . .+.+|.+|
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~-~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~---~--~~~~I~~I 75 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR-QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSE---L--TECHIRGI 75 (470)
T ss_pred ceEEEEecCCCceEEEEEcC-CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHh---C--CccceEEE
Confidence 48999999999999999998 9999999998876 456788999999999999999999999875 2 34579999
Q ss_pred EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
|+++++++++++|++ |+|++|+|.|.|.|+..+++++
T Consensus 76 ~is~~~~~~v~~D~~-G~pl~p~i~w~D~Ra~~~~~~l 112 (470)
T PRK10331 76 TVTTFGVDGALVDKQ-GNLLYPIISWKCPRTAAVMENI 112 (470)
T ss_pred EEeccccceEEECCC-cCCccCceeecCCCcHHHHHHH
Confidence 999999999999997 9999999999999998877654
No 9
>PRK15027 xylulokinase; Provisional
Probab=99.91 E-value=1.7e-24 Score=172.20 Aligned_cols=108 Identities=22% Similarity=0.271 Sum_probs=99.4
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
++||||+|||++|++|||. +|++++..+.+++...+.+|+.|+||++||+.+.+++++++++ . ..++|.+||++
T Consensus 1 ~~lgID~GTts~Ka~l~d~-~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~---~--~~~~I~aI~is 74 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE-QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQ---H--SLQDVKALGIA 74 (484)
T ss_pred CEEEEEecccceEEEEEcC-CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHh---C--CccceeEEEEe
Confidence 5799999999999999998 9999999999998888889999999999999999999999875 2 35689999999
Q ss_pred cCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 94 NQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 94 ~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
+|++|++++|++ |++++|+++|.|.|+.++++++
T Consensus 75 ~q~~~~v~~D~~-g~~l~p~i~w~D~R~~~~~~~l 108 (484)
T PRK15027 75 GQMHGATLLDAQ-QRVLRPAILWNDGRCAQECALL 108 (484)
T ss_pred cCCCceEEECCC-cCCccccccccCccHHHHHHHH
Confidence 999999999997 9999999999999998887654
No 10
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=99.91 E-value=4e-24 Score=170.35 Aligned_cols=112 Identities=38% Similarity=0.603 Sum_probs=103.0
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 92 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi 92 (129)
+|+||||+|||++|+++||. +|+++...+.+++...|.+|++++||+.||+.+.+++++++.+ .+.++++|.+||+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~-~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~aIgi 76 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK---AGIKPDDIAAIGI 76 (493)
T ss_pred CeEEEEecCCCceEEEEECC-CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCChhheeEEEE
Confidence 47999999999999999998 9999999999998888899999999999999999999999887 5777788999999
Q ss_pred ecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 93 TNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 93 s~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
++++++++++|+++|++++|++.|.|.|+..+++++
T Consensus 77 s~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l 112 (493)
T TIGR01311 77 TNQRETTVVWDKATGKPLYNAIVWQDRRTASICEEL 112 (493)
T ss_pred ecCcceEEEEECCCCcCcccceeecccchHHHHHHH
Confidence 999999999997559999999999999998877654
No 11
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=99.91 E-value=2.7e-24 Score=172.87 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=98.8
Q ss_pred eEEEEeCCCCceeEEEEe-CCCCcEEEEEEeeecc-----ccCC------CCeEEECHHHHHHHHHHHHHHHHHHHHhCC
Q psy1582 14 IRDRLSATYHTSRVLIIS-ALTQEEVVSHSMDIST-----ISPQ------EGWAEQDPMEILQAVQTTMDRAIEKLSAHG 81 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d-~~~g~iv~~~~~~~~~-----~~~~------~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 81 (129)
|+||||+|||++|++||| . +|++++..+.+++. ..|. +|++||||++||+.+.+++++++++ .+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~-~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~---~~ 77 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA-TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAE---LG 77 (536)
T ss_pred eEEEEecCCCceEEEEEECC-CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHH---cC
Confidence 789999999999999999 8 99999999888873 3553 8999999999999999999999987 56
Q ss_pred CCCCCeeEEEEecCcceEEEEeCCCCccccc-----------ceeecCCCcccccCCC
Q psy1582 82 LSRDDIVTLGITNQRETTVVWDLNTGEPLYN-----------AIEQGLRIVDCGSGRF 128 (129)
Q Consensus 82 ~~~~~I~~Igis~~~~g~v~~d~~~g~~~~~-----------~i~w~d~r~~~~~~~~ 128 (129)
.++++|.+||+++|+++++++|++ |+|++| +|.|.|.|+.++|+++
T Consensus 78 ~~~~~I~aI~~s~q~~s~v~~D~~-g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l 134 (536)
T TIGR01234 78 VDPADVVGIGVDFTACTPAPIDSD-GNPLCLLPEFAENPHAYFKLWKHHAAQEEADRI 134 (536)
T ss_pred CCHHHEEEEEEecCcceeEEECCC-CCEeecccccccCcccceeeeccCCcHHHHHHH
Confidence 667789999999999999999997 999983 8999999999888765
No 12
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=99.91 E-value=4.5e-24 Score=169.09 Aligned_cols=108 Identities=16% Similarity=0.101 Sum_probs=97.1
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeec--cccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~--~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
++||||+|||++|++|||. +|++++..+.+++ ...+.+|+.||||++||+.+.+++++++.+ ..+.+|.+||
T Consensus 2 ~ilgiD~GTss~K~~l~d~-~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-----~~~~~I~aI~ 75 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR-QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE-----LTEKHIRGIA 75 (465)
T ss_pred eEEEEecCCCcEEEEEEcC-CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh-----cChhceEEEE
Confidence 7899999999999999998 9999999988865 456789999999999999999999999853 3456799999
Q ss_pred EecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 92 ITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 92 is~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
+++|+++++++|++ |+|++|++.|.|+|+..+++++
T Consensus 76 ~s~~~~~~v~~D~~-G~~l~p~i~w~D~R~~~~~~~l 111 (465)
T TIGR02628 76 VTTFGVDGAPFDKQ-GNQLYPIISWKCPRTAPVMDNI 111 (465)
T ss_pred EeccccceEEECCC-CCCccccccccCcccHHHHHHH
Confidence 99999999999997 9999999999999998887654
No 13
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=99.90 E-value=6e-24 Score=171.12 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=100.6
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
++||||+|||++|++|||. +|+++.+.+.+++...|.+|++|+||++||+.+.+++++++++ .+.++++|.+|||+
T Consensus 1 ~~lgID~GTts~Ka~l~d~-~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~I~~Igis 76 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDS-TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE---SKVDPNSVKGIGFD 76 (541)
T ss_pred CEEEEEecCcCEEEEEEcC-CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH---cCCChhheEEEEec
Confidence 4799999999999999998 9999999998888888899999999999999999999999886 56677889999999
Q ss_pred cCcceEEEEeCCCCccc---------ccceeecCCCcccccCCC
Q psy1582 94 NQRETTVVWDLNTGEPL---------YNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 94 ~~~~g~v~~d~~~g~~~---------~~~i~w~d~r~~~~~~~~ 128 (129)
++ ++++++|++ |+|+ +|+|.|+|.|+.++++++
T Consensus 77 ~~-~s~v~~D~~-g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l 118 (541)
T TIGR01315 77 AT-CSLVVLTHD-GEPLPVSKNGGADQNIILWMDHRALAEAEKI 118 (541)
T ss_pred cc-ccceEEcCC-CCeeecCCCCCcccceeEeecCcHHHHHHHH
Confidence 99 899999997 9999 899999999999888765
No 14
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=99.90 E-value=1.2e-23 Score=168.13 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=99.2
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
|+||||+|||++|++++|. +|+++.+.+.+++...+.+|+.++||++||+.+.+++++++++ .+.. .+|.+|||+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~-~~I~~Igis 75 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE-NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSIN---LEDE-DEILFVSFS 75 (505)
T ss_pred CEEEEeccccceEEEEEcC-CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHh---CCCc-CceEEEEEe
Confidence 5899999999999999998 9999999999888777888999999999999999999999876 3444 679999999
Q ss_pred cCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 94 NQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 94 ~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
++++++++||++ |+|++|+++|.|.|+.++++++
T Consensus 76 ~~~~~~v~~D~~-g~pl~~~i~w~D~R~~~~~~~l 109 (505)
T TIGR01314 76 TQMHSLIAFDEN-WQPLTRLITWADNRAVKYAEQI 109 (505)
T ss_pred cccceeEEECCC-cCCcccceeccccchHHHHHHH
Confidence 999999999997 9999999999999998877654
No 15
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=99.90 E-value=2.8e-23 Score=166.53 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=97.9
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccc--cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~--~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I 90 (129)
+|+||||+|||++|+++||. +|+++...+.+++.. .+.+|++|+||++||+.+.+++++++++ ++..+.+|.+|
T Consensus 3 ~~~lgID~GTts~Ka~l~d~-~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~---~~~~~~~I~aI 78 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDL-NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQK---AGIPASDIAAV 78 (520)
T ss_pred cEEEEEecCCCceEEEEECC-CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHH---cCCCccceEEE
Confidence 59999999999999999998 999999988887644 4568999999999999999999999876 56667789999
Q ss_pred EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
|+++|++++++||++ |+|+++ +.|.|.|+..+++++
T Consensus 79 ~~s~~~~~~v~~D~~-g~pl~~-~~~~D~Ra~~~~~~l 114 (520)
T PRK10939 79 SATSMREGIVLYDRN-GTEIWA-CANVDARASREVSEL 114 (520)
T ss_pred EEECCcccEEEECCC-CCEeeC-CcCCCcccHHHHHHH
Confidence 999999999999997 999975 568999998887664
No 16
>PLN02669 xylulokinase
Probab=99.87 E-value=3.6e-22 Score=161.27 Aligned_cols=114 Identities=10% Similarity=0.119 Sum_probs=98.1
Q ss_pred CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccC---CCCeEEECHH----------HHHHHHHHHHHHHHHH
Q psy1582 10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISP---QEGWAEQDPM----------EILQAVQTTMDRAIEK 76 (129)
Q Consensus 10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~---~~g~~~~~~~----------~~~~~i~~~~~~~~~~ 76 (129)
+...|+||||+|||++|++|||. +|++++..+.+++.+.| .+|++++||+ .||+++..+++++.+
T Consensus 5 ~~~~~~LGiD~GT~s~Ka~l~d~-~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~- 82 (556)
T PLN02669 5 PEDSLFLGFDSSTQSLKATVLDS-NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAK- 82 (556)
T ss_pred CCCCeEEEEecccCCeEEEEEcC-CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHH-
Confidence 34679999999999999999999 99999999999875433 4567999998 688999999999873
Q ss_pred HHhCCCCCCCeeEEEEecCcceEEEEeCCCCccc-------------------ccceeecCCCcccccCCC
Q psy1582 77 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL-------------------YNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 77 ~~~~~~~~~~I~~Igis~~~~g~v~~d~~~g~~~-------------------~~~i~w~d~r~~~~~~~~ 128 (129)
++.++++|.+||+++|+||+++||++.|+++ .|.+.|+|.|+..+|++|
T Consensus 83 ---~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l 150 (556)
T PLN02669 83 ---EKFPFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREI 150 (556)
T ss_pred ---cCCChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHH
Confidence 4777789999999999999999988557776 578899999999999876
No 17
>KOG2517|consensus
Probab=99.85 E-value=9.1e-21 Score=149.92 Aligned_cols=118 Identities=31% Similarity=0.439 Sum_probs=105.7
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
.++++|||+|||+.|++|||..+|+++..++.++....|.+||++|+|.++|+.+.+|++++.+++...+.....+.+||
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 58999999999999999999549999999999999889999999999999999999999998877533344445677899
Q ss_pred EecCcceEEEEeCCCCcccccceeecCCCcccccCCCC
Q psy1582 92 ITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRFN 129 (129)
Q Consensus 92 is~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~~ 129 (129)
++.|++|.++|++.+|+|.+++|.|+|.|+...|+++|
T Consensus 85 v~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln 122 (516)
T KOG2517|consen 85 VVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELN 122 (516)
T ss_pred EEecCCceEEeecCCCCcccceEEeeccccHHHHHHHH
Confidence 99999999999999999999999999999999888765
No 18
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=99.84 E-value=7.4e-21 Score=150.75 Aligned_cols=107 Identities=26% Similarity=0.333 Sum_probs=97.2
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
||||+|||++|++|+|. +|+++.+.+.+++...+.+|+.+++|+++|+.+.+++++++++ .+.++.+|.+||++++
T Consensus 1 lgIDiGtt~ik~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~---~~~~~~~I~gIgvs~~ 76 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ---ASEMGQDIKGIGISGQ 76 (481)
T ss_pred CceeecCcceEEEEECC-CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEEecC
Confidence 68999999999999998 9999999999998888899999999999999999999999987 5677789999999999
Q ss_pred cceEEEEeCCCCcccccceeecCCCcccccCC
Q psy1582 96 RETTVVWDLNTGEPLYNAIEQGLRIVDCGSGR 127 (129)
Q Consensus 96 ~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~ 127 (129)
++|+++||++ |++++|.+.|.|.|...++++
T Consensus 77 ~~g~v~~d~~-g~~l~~~i~W~D~r~~~~~~~ 107 (481)
T TIGR01312 77 MHGLVLLDAN-GEVLRPAILWNDTRTAQECEE 107 (481)
T ss_pred CceeEEECCC-cCCCccchhhhccchHHHHHH
Confidence 9999999975 999999999999998555443
No 19
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=99.82 E-value=2e-20 Score=147.84 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=90.1
Q ss_pred EEEeCCCCceeEEEEeCCC---CcEE-EEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 16 DRLSATYHTSRVLIISALT---QEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~---g~iv-~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
+|||+|||++|++++|. + |+++ .....+++...+.+++.++||+.||+.+.++++++... ..+|.+||
T Consensus 1 ~aiD~Gtt~~k~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-------~~~i~~Ig 72 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY-ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-------GIAPDSIG 72 (454)
T ss_pred CcEeccCCchheEEEEE-cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-------CCCceEEE
Confidence 58999999999999998 6 5666 56666666667788999999999999999999888642 35699999
Q ss_pred EecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 92 ITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 92 is~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
|++|+++++++|++ |+|++|++.|.|.|+.++++++
T Consensus 73 is~q~~~~v~~D~~-G~~l~p~i~w~D~R~~~~~~~l 108 (454)
T TIGR02627 73 IDTWGVDFVLLDQN-GQRVGDPVSYRDSRTDGVMAQV 108 (454)
T ss_pred EeccceeEEEEcCC-CCCccCceecCCCCCHHHHHHH
Confidence 99999999999997 9999999999999998887654
No 20
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=99.80 E-value=1.1e-19 Score=143.37 Aligned_cols=114 Identities=19% Similarity=0.182 Sum_probs=104.2
Q ss_pred CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582 11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I 90 (129)
++.|+||||+||.|.|+++||..+|++++.+..|++...+.+...+|++.++|++++.++++++++ +|+++.+|++|
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~---agv~~~~V~gI 77 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK---AGVDPADVVGI 77 (544)
T ss_pred CccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH---cCCChhHeeEE
Confidence 467999999999999999999845999999999999888888889999999999999999999998 89999999999
Q ss_pred EEecCcceEEEEeCCCCcccc---------cceeecCCCcccccCCCC
Q psy1582 91 GITNQRETTVVWDLNTGEPLY---------NAIEQGLRIVDCGSGRFN 129 (129)
Q Consensus 91 gis~~~~g~v~~d~~~g~~~~---------~~i~w~d~r~~~~~~~~~ 129 (129)
|++.. ++++++|++ |+|+. +.+.|+|.|+..+++++|
T Consensus 78 GvDaT-cSlvv~d~~-g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in 123 (544)
T COG1069 78 GVDAT-CSLVVIDRD-GNPLAVLPEFPNNPNVILWMDHRAVEEAEEIN 123 (544)
T ss_pred EEcce-eeeEEECCC-CCeeccCCCCCCCCceEEeccchHHHHHHHHH
Confidence 99999 999999997 98873 157899999999998876
No 21
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=99.31 E-value=7.7e-12 Score=99.67 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=62.8
Q ss_pred cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 49 SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 49 ~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
.+.+++.++||+.||+.+.++++++.. .+.+|.+|||+++++++++||++ |+|++|+|.|+|.|+..+++++
T Consensus 25 ~~~~~~~~~d~~~~~~~i~~~l~~~~~-------~~~~I~~Igis~q~~~~v~lD~~-G~pL~pai~w~D~Ra~~~~~~l 96 (471)
T PRK10640 25 HSQDGFDTWDVDSLESAIRLGLNKVCE-------EGIRIDSIGIDTWGVDYVLLDKQ-GQRVGLPVSYRDSRTDGVMAQA 96 (471)
T ss_pred eeeCCeeEECHHHHHHHHHHHHHHHhh-------cCCCccEEEEcCCcccEEEECCC-CCCcCCceeccCCCCHHHHHHH
Confidence 356788999999999999998877754 24679999999999999999997 9999999999999998887654
No 22
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.10 E-value=3.2e-10 Score=83.52 Aligned_cols=70 Identities=11% Similarity=0.205 Sum_probs=58.1
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
|++|||+|||++|++++| +|+++...+. +|+.||+.+.+++++++++ .+.++.+|.+|+++
T Consensus 1 ~~lGIDiGtts~K~vl~d--~g~il~~~~~--------------~~~~~~~~~~~~l~~~~~~---~~~~~~~i~~i~~T 61 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME--DGKVIGYKWL--------------DTTPVIEETARAILEALKE---AGIGLEPIDKIVAT 61 (248)
T ss_pred CEEEEEcChhheEEEEEc--CCEEEEEEEe--------------cCCCCHHHHHHHHHHHHHH---cCCChhheeEEEEE
Confidence 579999999999999998 5788886543 4555788888888888876 67777899999999
Q ss_pred cCcceEEEE
Q psy1582 94 NQRETTVVW 102 (129)
Q Consensus 94 ~~~~g~v~~ 102 (129)
++++++++.
T Consensus 62 g~~~~~v~~ 70 (248)
T TIGR00241 62 GYGRHKVGF 70 (248)
T ss_pred CCCcccccc
Confidence 999998763
No 23
>PRK09698 D-allose kinase; Provisional
Probab=99.01 E-value=3.3e-09 Score=79.81 Aligned_cols=90 Identities=7% Similarity=0.012 Sum_probs=66.1
Q ss_pred CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582 11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I 90 (129)
+..+++|||+|+|+++++++|. +|+++.+.+.+++. ..+++. ++.+.+.+++++++ .+ .++.+|
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~-~g~i~~~~~~~~~~--------~~~~~~-~~~l~~~i~~~~~~---~~---~~i~gi 65 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDA-EGEILHCEKKRTAE--------VIAPDL-VSGLGEMIDEYLRR---FN---ARCHGI 65 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcC-CCCEEEEEEeCCcc--------ccchHH-HHHHHHHHHHHHHH---cC---CCeeEE
Confidence 4578999999999999999999 99999887766531 123444 77788888888775 22 579999
Q ss_pred EEecCcceEEEEeCCCCcccc-ccee---ecCCC
Q psy1582 91 GITNQRETTVVWDLNTGEPLY-NAIE---QGLRI 120 (129)
Q Consensus 91 gis~~~~g~v~~d~~~g~~~~-~~i~---w~d~r 120 (129)
||+.++ ++|.++|.++. |.+. |.+..
T Consensus 66 gia~pG----~vd~~~g~i~~~~~~~~~~~~~~~ 95 (302)
T PRK09698 66 VMGFPA----LVSKDRRTVISTPNLPLTALDLYD 95 (302)
T ss_pred EEeCCc----ceeCCCCEEEecCCCCccccccCC
Confidence 999987 67876565543 4444 66643
No 24
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.99 E-value=2.5e-09 Score=78.95 Aligned_cols=86 Identities=8% Similarity=0.025 Sum_probs=60.9
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
+++|||||+|++|++++|. +|+++.+.+.+++ ..+++++++.+.+.+++.... ...+.+|||+
T Consensus 1 ~~lgidiggt~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgv~ 63 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDE-NLQRIWHKRVPTP---------REDYPQLLQILRDLTEEADTY-------CGVQGSVGIG 63 (256)
T ss_pred CEEEEEECCCcEEEEEECC-CCCEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCCceEEEE
Confidence 4699999999999999999 9999988777653 135666777777666655332 1334589999
Q ss_pred cCcceEEEEeCCCCcccccce-eecCCC
Q psy1582 94 NQRETTVVWDLNTGEPLYNAI-EQGLRI 120 (129)
Q Consensus 94 ~~~~g~v~~d~~~g~~~~~~i-~w~d~r 120 (129)
.++ ++|.++|....+.+ .|.+..
T Consensus 64 ~pG----~vd~~~g~i~~~~~~~w~~~~ 87 (256)
T PRK13311 64 IPG----LPNADDGTVFTANVPSAMGQP 87 (256)
T ss_pred ecC----cEECCCCEEEccCCCcccCCC
Confidence 877 56876676554444 477643
No 25
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=98.98 E-value=2.6e-09 Score=80.79 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=67.9
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
||||+|+|+++++++|. +|+++.+.+.+.+ .+++.+++.+.+.+++++++ .+....++.+|||+.+
T Consensus 1 lgidig~t~~~~~l~d~-~g~i~~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDE-EGNILSKWKVPTD----------TTPETIVDAIASAVDSFIQH---IAKVGHEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECC-CCCEEEEEEeCCC----------CCHHHHHHHHHHHHHHHHHh---cCCCccceEEEEEecc
Confidence 68999999999999999 8999987666442 25778888899999888876 5666678999999987
Q ss_pred cceEEEEeCCCCcccc-cceeecCCC
Q psy1582 96 RETTVVWDLNTGEPLY-NAIEQGLRI 120 (129)
Q Consensus 96 ~~g~v~~d~~~g~~~~-~~i~w~d~r 120 (129)
+ ++|.++|.... |.+.|.+..
T Consensus 67 G----~vd~~~g~~~~~~~~~w~~~~ 88 (318)
T TIGR00744 67 G----PVNRQRGTVYFAVNLDWKQEP 88 (318)
T ss_pred c----cccCCCCEEEecCCCCCCCCC
Confidence 7 66876576543 445687744
No 26
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.91 E-value=5.6e-09 Score=78.67 Aligned_cols=86 Identities=9% Similarity=-0.016 Sum_probs=62.8
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
+++|||+|+|+++++++|. +|+++.+.+.+++ ..+++.+.+.+.+.++++... ...+.+|||+
T Consensus 1 ~~lgidig~t~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~~igia 63 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNE-KLELQWEERVPTP---------RDSYDAFLDAVCELVAEADQR-------FGCKGSVGIG 63 (303)
T ss_pred CeEEEEeCCCcEEEEEECC-CCcEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCcceEEEe
Confidence 3699999999999999999 9999987776553 135777888888777766543 1234589999
Q ss_pred cCcceEEEEeCCCCcccccce-eecCCC
Q psy1582 94 NQRETTVVWDLNTGEPLYNAI-EQGLRI 120 (129)
Q Consensus 94 ~~~~g~v~~d~~~g~~~~~~i-~w~d~r 120 (129)
.++ ++|.++|....+.+ .|.+..
T Consensus 64 ~pG----~vd~~~g~~~~~~~~~w~~~~ 87 (303)
T PRK13310 64 IPG----MPETEDGTLYAANVPAASGKP 87 (303)
T ss_pred CCC----cccCCCCEEeccCcccccCCc
Confidence 887 67876676655444 487643
No 27
>PRK09557 fructokinase; Reviewed
Probab=98.90 E-value=6.4e-09 Score=78.34 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=60.5
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
++||||+|+|+++++++|. +|+++.+.+.+++ ..+++.+.+.+.+.++++... ...+.+||++
T Consensus 1 ~~lgidig~t~~~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgi~ 63 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDD-AGEELFRKRLPTP---------RDDYQQTIEAIATLVDMAEQA-------TGQRGTVGVG 63 (301)
T ss_pred CEEEEEECCCcEEEEEECC-CCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHhh-------cCCceEEEec
Confidence 4799999999999999999 9999987776553 135667777777777766543 1356789999
Q ss_pred cCcceEEEEeCCCCcccccceee
Q psy1582 94 NQRETTVVWDLNTGEPLYNAIEQ 116 (129)
Q Consensus 94 ~~~~g~v~~d~~~g~~~~~~i~w 116 (129)
.++ ++|.++|.+..+...|
T Consensus 64 ~pG----~vd~~~g~i~~~~~~~ 82 (301)
T PRK09557 64 IPG----SISPYTGLVKNANSTW 82 (301)
T ss_pred Ccc----cCcCCCCeEEecCCcc
Confidence 877 6787667665544446
No 28
>KOG2531|consensus
Probab=98.89 E-value=3.8e-09 Score=82.87 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=82.4
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCC----CCe-------EEECHH-HHHHHHHHHHHHHHHHHHh
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQ----EGW-------AEQDPM-EILQAVQTTMDRAIEKLSA 79 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~----~g~-------~~~~~~-~~~~~i~~~~~~~~~~~~~ 79 (129)
...+||+|++|+.+|++++|. +++++......++.+.|+ .|. .-..|. .|.+++.-.++++. +
T Consensus 8 ~~~fLG~DlSTQqlKaviids-~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl~----~ 82 (545)
T KOG2531|consen 8 DRSFLGFDLSTQQLKAVIIDS-NLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKLR----E 82 (545)
T ss_pred CceeeeeecccceeEEEEEcC-CccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHHH----H
Confidence 346899999999999999999 999999999888877653 222 222455 66666655555544 3
Q ss_pred CCCCCCCeeEEEEecCcceEEEEeCCCCc-cccc-------------------ceeecCCCcccccCCC
Q psy1582 80 HGLSRDDIVTLGITNQRETTVVWDLNTGE-PLYN-------------------AIEQGLRIVDCGSGRF 128 (129)
Q Consensus 80 ~~~~~~~I~~Igis~~~~g~v~~d~~~g~-~~~~-------------------~i~w~d~r~~~~~~~~ 128 (129)
+|.+...|.+|+-++|.||.|+|.+. ++ .+.. ...|+|..++.+|.++
T Consensus 83 ~~~d~~kV~aiSGagQQHGsVyWs~g-a~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~El 150 (545)
T KOG2531|consen 83 AGFDLSKVMAISGAGQQHGSVYWSKG-AENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQEL 150 (545)
T ss_pred cCCCHHHhhhhcccccccceeeehhh-hHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHH
Confidence 68888999999999999999999764 32 1111 2369999988888654
No 29
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.3e-08 Score=77.04 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=62.3
Q ss_pred CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582 10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT 89 (129)
Q Consensus 10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~ 89 (129)
+++.+++|||||+|++|++++|. .|+++.+.+.+++. ..+.+.+.+.+.+.++++++. .+ ...++.+
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~-~g~~l~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~---~~-~~~~~iG 69 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDL-DGEILLRERIPTPT--------PDPEEAILEAILALVAELLKQ---AQ-GRVAIIG 69 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECC-CCcEEEEEEEecCC--------CCchhHHHHHHHHHHHHHHHh---cC-CcCceEE
Confidence 45678999999999999999999 99999988888763 122346778888888888765 22 2344666
Q ss_pred EEEecCcceEEEEeCCCCcccccceeecC
Q psy1582 90 LGITNQRETTVVWDLNTGEPLYNAIEQGL 118 (129)
Q Consensus 90 Igis~~~~g~v~~d~~~g~~~~~~i~w~d 118 (129)
||+++++ .++..+-....|.+.|.+
T Consensus 70 Igi~~pg----~~~~~~~~~~~~~~~~~~ 94 (314)
T COG1940 70 IGIPGPG----DVDNGTVIVPAPNLGWWN 94 (314)
T ss_pred EEeccce----eccCCcEEeecCCCCccc
Confidence 6666543 445542022345555544
No 30
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=98.81 E-value=4.7e-08 Score=68.10 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=66.0
Q ss_pred EEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCc
Q psy1582 17 RLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 96 (129)
Q Consensus 17 giDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~ 96 (129)
|||||+++++++++|. .|+++.+.+.+++ .+++++++.+.+.++++..+. ... +|||+.++
T Consensus 1 gidig~~~i~~~l~d~-~g~ii~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~~-------~~~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDL-DGEIIYSESIPTP----------TSPEELLDALAELIERLLADY-------GRS-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEET-TSCEEEEEEEEHH----------SSHHHHHHHHHHHHHHHHHHH-------TCE-EEEEEESS
T ss_pred CEEECCCEEEEEEECC-CCCEEEEEEEECC----------CCHHHHHHHHHHHHHHHHhhc-------ccc-cEEEeccc
Confidence 7999999999999999 9999998888774 468889999999999888763 223 99999887
Q ss_pred ceEEEEeCCCCcccc-cceeecCCCc
Q psy1582 97 ETTVVWDLNTGEPLY-NAIEQGLRIV 121 (129)
Q Consensus 97 ~g~v~~d~~~g~~~~-~~i~w~d~r~ 121 (129)
++|.++|.++. |...|.+.+.
T Consensus 62 ----~v~~~~g~i~~~~~~~~~~~~l 83 (179)
T PF00480_consen 62 ----IVDSEKGRIISSPNPGWENIPL 83 (179)
T ss_dssp ----EEETTTTEEEECSSGTGTTCEH
T ss_pred ----cCcCCCCeEEecCCCCcccCCH
Confidence 77887656654 5567888554
No 31
>PRK12408 glucokinase; Provisional
Probab=98.68 E-value=3.2e-08 Score=75.98 Aligned_cols=93 Identities=11% Similarity=0.076 Sum_probs=55.7
Q ss_pred CCCCCCCeEEEEeCCCCceeEEEEeCCCCcE------EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhC
Q psy1582 7 QAVAPTQIRDRLSATYHTSRVLIISALTQEE------VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAH 80 (129)
Q Consensus 7 ~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~i------v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (129)
.+|+.+.++|++|||+|++|++++|. ++++ +...+.+++ + ++.+.+.+++++++
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~-~g~~~~~~~~~~~~~~~t~-----------~----~~~~~~~i~~~~~~---- 69 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCA-SPDAAKPVELLDYRTYRCA-----------D----YPSLAAILADFLAE---- 69 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEec-cCCccccccccceeEecCC-----------C----ccCHHHHHHHHHhc----
Confidence 45555667899999999999999997 7763 333232221 1 12233444455442
Q ss_pred CCCCCCeeEEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 81 GLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 81 ~~~~~~I~~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
..++.+|||+.+++ . ++ +|.+..+.+.|... .+..+++|
T Consensus 70 ---~~~~~~igIg~pG~-~--~~--~g~v~~~nl~w~~~-~~~l~~~~ 108 (336)
T PRK12408 70 ---CAPVRRGVIASAGY-A--LD--DGRVITANLPWTLS-PEQIRAQL 108 (336)
T ss_pred ---CCCcCEEEEEecCC-c--eE--CCEEEecCCCCccC-HHHHHHHc
Confidence 13588999999874 1 33 36666555678542 24444333
No 32
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=98.53 E-value=3.2e-07 Score=68.73 Aligned_cols=84 Identities=6% Similarity=-0.016 Sum_probs=56.7
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 94 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~ 94 (129)
++|||+|+|+++++++|. +|+++.+.+.+++. ..+++.+.+.+.+.++++. .++.+|||+.
T Consensus 3 ~lgvdig~~~i~~~l~dl-~g~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~----------~~~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGE-DGQIRQRRQIPTPA--------SQTPEALRQALSALVSPLQ----------AQADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcC-CCcEEEEEEecCCC--------CCCHHHHHHHHHHHHHHhh----------hcCcEEEEeC
Confidence 699999999999999999 99999877766541 1356666666666665543 2356899998
Q ss_pred CcceEEEEeCCCCccccc-ce-eecCCCc
Q psy1582 95 QRETTVVWDLNTGEPLYN-AI-EQGLRIV 121 (129)
Q Consensus 95 ~~~g~v~~d~~~g~~~~~-~i-~w~d~r~ 121 (129)
++ ++|........+ .+ .|.+...
T Consensus 64 pG----~vd~~~~~~~~~~~~~~w~~~~l 88 (291)
T PRK05082 64 TG----IINDGILTALNPHNLGGLLHFPL 88 (291)
T ss_pred cc----cccCCeeEEecCCCCccccCCCh
Confidence 76 556432222222 23 5877543
No 33
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=5.5e-07 Score=67.78 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=56.3
Q ss_pred CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECH-HHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582 10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDP-MEILQAVQTTMDRAIEKLSAHGLSRDDIV 88 (129)
Q Consensus 10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~I~ 88 (129)
+++.|+||||-|+|+++++|.|. +|+++.+.+.. |.....++ ++.+..+.+++.+.+.+ +|.++++|.
T Consensus 2 ~~~~~~lGVDGGGTkt~a~l~~~-~g~vlg~g~sG-------pAN~~~~~~e~A~~ni~~ai~~A~~~---aG~~~~~i~ 70 (301)
T COG2971 2 EPMPYFLGVDGGGTKTRAVLADE-DGNVLGRGKSG-------PANIQLVGKEEAVRNIKDAIREALDE---AGLKPDEIA 70 (301)
T ss_pred CCccEEEEEccCCcceEEEEEcC-CCcEEEEeccC-------CceecccchHHHHHHHHHHHHHHHHh---cCCCHHHhC
Confidence 46789999999999999999998 99999987542 22233445 88899999999998876 788888765
Q ss_pred EEEE
Q psy1582 89 TLGI 92 (129)
Q Consensus 89 ~Igi 92 (129)
.+.+
T Consensus 71 ~~~a 74 (301)
T COG2971 71 AIVA 74 (301)
T ss_pred ceee
Confidence 4433
No 34
>PRK00292 glk glucokinase; Provisional
Probab=98.52 E-value=1.8e-07 Score=71.04 Aligned_cols=89 Identities=6% Similarity=-0.066 Sum_probs=53.7
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 92 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi 92 (129)
+++||+|||+|++|++++|...+.++.+.+.+++ +. +.+.+.+.+++++. . ..++.+|||
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~-----------~~----~~~~~~l~~~l~~~--~---~~~~~gigI 61 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA-----------DY----PSLEDAIRAYLADE--H---GVQVRSACF 61 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEecC-----------CC----CCHHHHHHHHHHhc--c---CCCCceEEE
Confidence 4789999999999999999525555666555442 11 12444444554420 1 136889999
Q ss_pred ecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 93 TNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 93 s~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
+.+| ++|.++ +..+.+.|.+. .+...++|
T Consensus 62 g~pG----~vd~~~--i~~~n~~w~~~-~~~l~~~~ 90 (316)
T PRK00292 62 AIAG----PVDGDE--VRMTNHHWAFS-IAAMKQEL 90 (316)
T ss_pred EEeC----cccCCE--EEecCCCcccC-HHHHHHHh
Confidence 9877 677652 33444568763 34444333
No 35
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=98.44 E-value=1.5e-06 Score=54.94 Aligned_cols=60 Identities=10% Similarity=-0.085 Sum_probs=41.2
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
.+||||+|+|+++++++|. +|+++...+.+.. .+.+.+++. +.+++.+ .++.+|||+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~-~g~~~~~~~~~~~----------~~~~~~~~~----l~~~i~~--------~~~~~i~Ig 58 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE-TGKLADPLEVIPR----------TNKEADAAR----LKKLIKK--------YQPDLIVIG 58 (99)
T ss_pred cEEEEccCCCeEEEEEECC-CCCEecCEEEEEe----------cCcchHHHH----HHHHHHH--------hCCCEEEEe
Confidence 3799999999999999998 9998876665442 122333433 4445543 246688888
Q ss_pred cCc
Q psy1582 94 NQR 96 (129)
Q Consensus 94 ~~~ 96 (129)
.++
T Consensus 59 ~pg 61 (99)
T smart00732 59 LPL 61 (99)
T ss_pred CCc
Confidence 766
No 36
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=98.30 E-value=1.8e-06 Score=64.10 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=51.0
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
||||.|+|++|++++|. +|+++.+....-.. ....+.+...+.+.+.+++++.+ .+.++.+|..++++..
T Consensus 1 lGIDgGgTkt~~vl~d~-~g~il~~~~~~~~n------~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~i~~~~~g~a 70 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE-NGNILGRGKGGGAN------YNSVGFEEAMENIKEAIEEALSQ---AGLSPDDIAAICIGAA 70 (271)
T ss_dssp EEEEECSSEEEEEEEET-TSEEEEEEEES-TT------HHHHHHHHHHHHHHHHHHHHHHH---HTTSTTCCCEEEEEEE
T ss_pred CEEeeChheeeeEEEeC-CCCEEEEEEeCCCC------CCCCCcchhhhHHHHHHHHHHHH---cCCCccccceeeeeEe
Confidence 79999999999999999 99988766542211 01134567778888888888887 5777777777755543
No 37
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=98.26 E-value=1.1e-06 Score=72.77 Aligned_cols=88 Identities=6% Similarity=-0.005 Sum_probs=57.1
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 92 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi 92 (129)
..+||+|||+|++|++++|. +|+++...++++.. ++.+.+.+++++++ .+. .++.+|||
T Consensus 18 ~~~L~iDIGGT~ir~al~~~-~g~i~~~~~~~t~~---------------~~~~~~~i~~~l~~---~~~--~~~~~igi 76 (638)
T PRK14101 18 GPRLLADVGGTNARFALETG-PGEITQIRVYPGAD---------------YPTLTDAIRKYLKD---VKI--GRVNHAAI 76 (638)
T ss_pred CCEEEEEcCchhheeeeecC-CCcccceeEEecCC---------------CCCHHHHHHHHHHh---cCC--CCcceEEE
Confidence 45899999999999999998 89888776655421 12345555666554 222 35889999
Q ss_pred ecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582 93 TNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128 (129)
Q Consensus 93 s~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~ 128 (129)
+.+| ++|.+ . ...+.+.|... .+...++|
T Consensus 77 g~pG----pVd~~-~-~~~~nl~w~~~-~~~l~~~~ 105 (638)
T PRK14101 77 AIAN----PVDGD-Q-VRMTNHDWSFS-IEATRRAL 105 (638)
T ss_pred EEec----CccCC-e-eeecCCCcEec-HHHHHHHc
Confidence 9887 67754 2 22344567642 34444444
No 38
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.25 E-value=9.5e-06 Score=60.40 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=48.5
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcE-EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEE-VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 92 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~i-v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi 92 (129)
+++|||+|+|++|++|+|. +++. .......++. . ..+| .+...+++++++++ +|++..++.+++.
T Consensus 2 ~~~GIDiGStttK~Vlid~-~~~~~~~~~~~~~~~----~---~~~~---~~~~~~~l~~~~~~---~g~~~~~i~~i~~ 67 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV-DGDKEECLAKRNDRI----R---QRDP---FKLAEDAYDDLLEE---AGLAAADVAYCAT 67 (262)
T ss_pred eEEEEEcCcccEEEEEEec-CCCeeEEEEEEEecC----C---CCCH---HHHHHHHHHHHHHH---cCCChhheEEEEE
Confidence 6899999999999999996 4542 2222222221 0 1234 23455666777766 6777789999999
Q ss_pred ecCcceE
Q psy1582 93 TNQRETT 99 (129)
Q Consensus 93 s~~~~g~ 99 (129)
+++|..+
T Consensus 68 TGYGR~~ 74 (262)
T TIGR02261 68 TGEGESL 74 (262)
T ss_pred ECCchhh
Confidence 9998665
No 39
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.25 E-value=9.3e-06 Score=61.29 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=50.2
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 92 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi 92 (129)
.+++|||+|+|++|++|+|. ++++.....++. .+|. +...+++++++++ .|+...++..++.
T Consensus 32 m~~~GIDiGStt~K~Vlld~--~~i~~~~~~~tg----------~~~~---~~a~~~l~~~l~~---~g~~~~~v~~~~~ 93 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCD--GELYGYNSMRTG----------NNSP---DSAKNALQGIMDK---IGMKLEDINYVVG 93 (293)
T ss_pred cEEEEEEeCchhEEEEEEeC--CEEEEEEeecCC----------CCHH---HHHHHHHHHHHHH---cCCcccceEEEEE
Confidence 58999999999999999995 467665554332 2342 3455666677766 5776678999999
Q ss_pred ecCcceEE
Q psy1582 93 TNQRETTV 100 (129)
Q Consensus 93 s~~~~g~v 100 (129)
++++.-.+
T Consensus 94 TGyGr~~~ 101 (293)
T TIGR03192 94 TGYGRVNV 101 (293)
T ss_pred ECcchhhc
Confidence 88876554
No 40
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.17 E-value=1.5e-05 Score=62.40 Aligned_cols=72 Identities=15% Similarity=0.299 Sum_probs=53.3
Q ss_pred CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582 11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I 90 (129)
.+++++|||+|+|++|++++|. ++++.....++. ++ ...+.+++++++++ +|+...+|.++
T Consensus 142 ~~g~~lGIDiGSTttK~Vl~dd--~~Ii~~~~~~t~-----------~~---~~~a~~~l~~~l~~---~Gl~~~di~~i 202 (404)
T TIGR03286 142 QEGLTLGIDSGSTTTKAVVMED--NEVIGTGWVPTT-----------KV---IESAEEAVERALEE---AGVSLEDVEAI 202 (404)
T ss_pred cCCEEEEEEcChhheeeEEEcC--CeEEEEEEeecc-----------cH---HHHHHHHHHHHHHH---cCCCccceeEE
Confidence 4568999999999999999984 588876554331 22 33456666677766 68777899999
Q ss_pred EEecCcceEEE
Q psy1582 91 GITNQRETTVV 101 (129)
Q Consensus 91 gis~~~~g~v~ 101 (129)
++++++...+.
T Consensus 203 ~~TGyGR~~i~ 213 (404)
T TIGR03286 203 GTTGYGRFTIG 213 (404)
T ss_pred EeeeecHHHHh
Confidence 99998876653
No 41
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=98.01 E-value=2.4e-05 Score=55.10 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=51.4
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
||||+|+|++-++++|. +..++...+.++. |++....+.+++++++.. .+.++++|..|-+++.
T Consensus 2 igIDvGGT~TD~v~~d~-~~~~~~~~K~~Tt------------~~d~~~gi~~al~~l~~~---~~~~~~~i~~v~~gTT 65 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDE-DTGVVATAKVPTT------------PDDPAEGILEALDALLEE---SGIDPSDIDRVRHGTT 65 (176)
T ss_pred eeEecCCCcEEEEEEeC-CCCEEEEEEeCCC------------CcCHHHHHHHHHHhhhcc---cCCChhhCcEEEeccH
Confidence 79999999999999998 6578888877652 334466777888888765 4666788888888876
Q ss_pred cce
Q psy1582 96 RET 98 (129)
Q Consensus 96 ~~g 98 (129)
...
T Consensus 66 ~~t 68 (176)
T PF05378_consen 66 VAT 68 (176)
T ss_pred HHH
Confidence 543
No 42
>PRK13321 pantothenate kinase; Reviewed
Probab=98.00 E-value=3.7e-05 Score=56.99 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=43.3
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 94 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~ 94 (129)
+|+||+|+|++|++++|. + +++...+.+++. ..+++++...+. +++++ .+..++++.++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~-~-~i~~~~~~~T~~--------~~~~~~~~~~l~----~l~~~---~~~~~~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDG-D-RLLRSFRLPTDK--------SRTSDELGILLL----SLFRH---AGLDPEDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEEC-C-EEEEEEEEecCC--------CCCHHHHHHHHH----HHHHH---cCCChhhCCeEEEEe
Confidence 589999999999999996 4 777665555531 234555555444 44443 344456799999997
Q ss_pred C
Q psy1582 95 Q 95 (129)
Q Consensus 95 ~ 95 (129)
.
T Consensus 65 V 65 (256)
T PRK13321 65 V 65 (256)
T ss_pred e
Confidence 4
No 43
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.96 E-value=5.3e-05 Score=58.74 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=49.3
Q ss_pred CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582 10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT 89 (129)
Q Consensus 10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~ 89 (129)
+...++||||.|+|++|++|++. +.+++........ ..|. ...++++++++ .+....+|.+
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~d-~~~I~~~~~~~t~----------g~p~-----~~~~l~~~le~---l~~~~~~I~~ 192 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLMED-GKEILYGFYVSTK----------GRPI-----AEKALKEALEE---LGEKLEEILG 192 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEeC-CCeEEEEEEEcCC----------CChh-----HHHHHHHHHHH---cccChheeee
Confidence 44678999999999999999996 5544443333221 1232 23445556555 4555578999
Q ss_pred EEEecCcceEEE
Q psy1582 90 LGITNQRETTVV 101 (129)
Q Consensus 90 Igis~~~~g~v~ 101 (129)
+|++++|.-++-
T Consensus 193 ~~~TGYGR~~v~ 204 (396)
T COG1924 193 LGVTGYGRNLVG 204 (396)
T ss_pred eeeecccHHHhh
Confidence 999999876554
No 44
>PRK13318 pantothenate kinase; Reviewed
Probab=97.95 E-value=5.3e-05 Score=56.18 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=43.3
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 94 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~ 94 (129)
+|+||+|+|++|.+++| +++++.+.+.+++. ...++++.. .++++++. .+.+..++.+|++|+
T Consensus 2 iL~IDIGnT~iK~al~d--~g~i~~~~~~~t~~--------~~~~~~~~~----~l~~l~~~---~~~~~~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE--GGKLVAHWRISTDS--------RRTADEYGV----WLKQLLGL---SGLDPEDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE--CCEEEEEEEEeCCC--------CCCHHHHHH----HHHHHHHH---cCCCcccCceEEEEE
Confidence 68999999999999999 47888766665531 123444443 34445444 344446799999998
Q ss_pred C
Q psy1582 95 Q 95 (129)
Q Consensus 95 ~ 95 (129)
.
T Consensus 65 V 65 (258)
T PRK13318 65 V 65 (258)
T ss_pred e
Confidence 3
No 45
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=97.88 E-value=4.3e-05 Score=60.29 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=49.0
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCe------EEE-C-HHHHHHHHHHHHHHHHHHHH-hCCCCC
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGW------AEQ-D-PMEILQAVQTTMDRAIEKLS-AHGLSR 84 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~------~~~-~-~~~~~~~i~~~~~~~~~~~~-~~~~~~ 84 (129)
|-++||||||++.+.++|..+|++++..+...+......+. ... + .+.+-+.+.+.+++++.++- ++++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 67899999999999999987899999998888765332221 111 1 23333344444444444331 268889
Q ss_pred CCeeEEEEec
Q psy1582 85 DDIVTLGITN 94 (129)
Q Consensus 85 ~~I~~Igis~ 94 (129)
++|..+.+++
T Consensus 82 ~~I~~i~i~G 91 (412)
T PF14574_consen 82 EDIYEIVIVG 91 (412)
T ss_dssp GGEEEEEEEE
T ss_pred HHeEEEEEEe
Confidence 9999888885
No 46
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=97.77 E-value=0.00028 Score=50.88 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=51.3
Q ss_pred CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCc-EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCC-
Q psy1582 5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQE-EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL- 82 (129)
Q Consensus 5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~-iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 82 (129)
.|.+... +.+|+||+|+|++|++++.. .|. .+...+..+.+. . .......+++++.|.+++.+.+++ .+.
T Consensus 56 ~P~G~E~-G~~LalDlGGTnlRv~~V~L-~g~~~~~~~~~~~~ip--~-~~~~~~~~~lFd~ia~~i~~f~~~---~~~~ 127 (206)
T PF00349_consen 56 LPTGNEK-GDFLALDLGGTNLRVALVEL-SGNGKVEIEQEKYKIP--E-ELMNGSGEELFDFIADCIAEFLKE---HNLE 127 (206)
T ss_dssp STTSTTE-EEEEEEEESSSSEEEEEEEE-ESSSEEEEEEEEEE----H-HHHTSBHHHHHHHHHHHHHHHHHH---TTTT
T ss_pred CCCCCCC-ceEEEEeecCcEEEEEEEEE-cCCCCceeeeccccCC--h-HHhcCCcccHHHHHHHHHHHHHHH---hccc
Confidence 4444433 45799999999999999998 565 333333333211 0 001123488999999999999886 333
Q ss_pred CCCCeeEEEEecC
Q psy1582 83 SRDDIVTLGITNQ 95 (129)
Q Consensus 83 ~~~~I~~Igis~~ 95 (129)
+..+..-+|++..
T Consensus 128 ~~~~~l~lGfTFS 140 (206)
T PF00349_consen 128 SRDEKLPLGFTFS 140 (206)
T ss_dssp STTSEEEEEEEEE
T ss_pred ccccccceEEEEE
Confidence 2345555666643
No 47
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.55 E-value=0.00023 Score=55.94 Aligned_cols=33 Identities=6% Similarity=0.031 Sum_probs=28.7
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
++|++|||+|+|++|++|+|. +++++.....+.
T Consensus 1 m~y~lGIDIGSTsTKaVVmd~-~g~Il~~~i~pT 33 (432)
T TIGR02259 1 MECFVGIDLGSTTTKAVLMDD-KGEVIGRGITNS 33 (432)
T ss_pred CceEEEEEcCchhEEEEEEcC-CCcEEEEEecCC
Confidence 358999999999999999998 778988777665
No 48
>KOG1794|consensus
Probab=97.43 E-value=0.0013 Score=49.65 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=57.0
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCC-eeEE
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD-IVTL 90 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-I~~I 90 (129)
+.++.||+-|.|.+|.+++|. .+.++.+..-....+. ..+....-+++.+.++++..+ +|.+++. ++++
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~-~~~~~~~a~~~~Tnh~------~ig~~~~~~rie~~i~~A~~k---~g~d~~~~lr~l 71 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDE-DGTILGRAVGGGTNHW------LIGSTTCASRIEDMIREAKEK---AGWDKKGPLRSL 71 (336)
T ss_pred CceeEeecCCcceeEEEEECC-CCCEeeEeeccccccc------cCCchHHHHHHHHHHHHHHhh---cCCCccCcccee
Confidence 568999999999999999998 9999998765443221 123455666777777777666 7998887 8888
Q ss_pred EEecCc
Q psy1582 91 GITNQR 96 (129)
Q Consensus 91 gis~~~ 96 (129)
|++..+
T Consensus 72 gL~lSg 77 (336)
T KOG1794|consen 72 GLGLSG 77 (336)
T ss_pred eeeccc
Confidence 888654
No 49
>PLN02914 hexokinase
Probab=97.37 E-value=0.002 Score=52.05 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=45.3
Q ss_pred cCCCCCCCeEEEEeCCCCceeEEEEeCCCCc---EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582 6 PQAVAPTQIRDRLSATYHTSRVLIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 6 ~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~---iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
|-+.. .+.+++||+|+|+.|++++.. .|+ ++...+..+++ | ........+++|+.|.+++.+.+++
T Consensus 89 PtG~E-~G~fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~i--p-~~l~~gt~~eLFdfIA~~i~~fl~~ 157 (490)
T PLN02914 89 PSGNE-KGLFYALDLGGTNFRVLRVQL-GGKDERVIATEFEQVSI--P-QELMFGTSEELFDFIASGLANFVAK 157 (490)
T ss_pred CCCCe-eeEEEEEecCCceEEEEEEEe-cCCCCceeeeeEEEecC--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence 44443 356799999999999999998 663 34433333332 1 1223345688999999999999875
No 50
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=97.33 E-value=0.0046 Score=43.55 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=42.2
Q ss_pred EEEEeCCCCceeEEEEeCC-CC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 15 RDRLSATYHTSRVLIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~-~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
++|+|||++++|+++.... +| ++++....|. .--..|.. .|.+...+.+.++++++=+. ++...+++ .++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s--~gi~~G~I-~d~~~~~~~I~~ai~~ae~~---~~~~i~~V-~v~ 73 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPS--RGIRKGVI-VDIEAAARAIREAVEEAERM---AGVKIDSV-YVG 73 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecC--CCccCcEE-ECHHHHHHHHHHHHHHHHHH---hCCcccEE-EEE
Confidence 4799999999999999742 34 4444443321 11123433 57777777777776665433 45443322 344
Q ss_pred EecC
Q psy1582 92 ITNQ 95 (129)
Q Consensus 92 is~~ 95 (129)
+++.
T Consensus 74 i~g~ 77 (187)
T smart00842 74 ISGR 77 (187)
T ss_pred EcCC
Confidence 4443
No 51
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=97.32 E-value=0.00034 Score=53.25 Aligned_cols=24 Identities=8% Similarity=-0.033 Sum_probs=20.4
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
|.+|||+|++|++++|. ++.++.+
T Consensus 1 l~~DIGGT~i~~glvd~-~g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEI-APGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEec-CCCceee
Confidence 57999999999999998 7766654
No 52
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=97.28 E-value=0.0065 Score=48.14 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=45.0
Q ss_pred CCCeEEEEeCCCCceeEEEEeCC-CC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582 11 PTQIRDRLSATYHTSRVLIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI 87 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~~-~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I 87 (129)
...+++|+||||+++|+++.... ++ ++++....|.. --..| .-.|.+...+++.++++++=.. +|....++
T Consensus 6 ~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~--gi~~G-~I~d~~~~~~aI~~av~~ae~~---~g~~i~~v 79 (420)
T PRK09472 6 DRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR--GMDKG-GVNDLESVVKCVQRAIDQAELM---ADCQISSV 79 (420)
T ss_pred CCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCC--CccCC-EEEcHHHHHHHHHHHHHHHHHH---hCCcccEE
Confidence 34689999999999999887621 44 34444444321 11234 3357777777777777665332 45443333
Q ss_pred eEEEEec
Q psy1582 88 VTLGITN 94 (129)
Q Consensus 88 ~~Igis~ 94 (129)
. +++++
T Consensus 80 ~-v~i~g 85 (420)
T PRK09472 80 Y-LALSG 85 (420)
T ss_pred E-EEecC
Confidence 2 45554
No 53
>PLN02405 hexokinase
Probab=97.24 E-value=0.0046 Score=50.12 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=46.0
Q ss_pred CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCc---EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582 5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~---iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
-|.+... +.+++||+|+|+.|++++.. .|+ .+...+..+++ | +.......+++|+.|.+++.+.+++
T Consensus 88 lPtG~E~-G~flAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~i--p-~~~~~gt~~~LFdfIA~~i~~fl~~ 157 (497)
T PLN02405 88 LPSGDEK-GLFYALDLGGTNFRVLRVLL-GGKDGRVVKQEFEEVSI--P-PHLMTGSSDALFDFIAAALAKFVAT 157 (497)
T ss_pred CCCCCcc-eeEEEEecCCceEEEEEEEE-cCCCCceeEEEEEEeec--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence 3444443 46799999999999999998 663 34433333332 1 1223346788999999999999875
No 54
>PLN02596 hexokinase-like
Probab=97.23 E-value=0.003 Score=51.04 Aligned_cols=66 Identities=11% Similarity=0.056 Sum_probs=44.3
Q ss_pred cCCCCCCCeEEEEeCCCCceeEEEEeCCCCc---EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582 6 PQAVAPTQIRDRLSATYHTSRVLIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 6 ~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~---iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
|.+...+ .+|+||+|+|+.|++++.. .|+ +....+..+++ | ........+++|+.|.+++.+.+++
T Consensus 90 PtG~E~G-~yLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~I--p-~~l~~~t~~eLFd~IA~~i~~fl~~ 158 (490)
T PLN02596 90 PSGDEKG-LYYGLNLRGSNFLLLRARL-GGKNEPISDLYREEISI--P-SNVLNGTSQELFDYIALELAKFVAE 158 (490)
T ss_pred CCCCcce-EEEEEeeCCceEEEEEEEE-cCCCCceEEEEEEEecC--C-hHhhcCCHHHHHHHHHHHHHHHHHh
Confidence 4455444 4599999999999999998 664 23332333322 1 1112345688999999999999875
No 55
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=97.09 E-value=0.003 Score=49.02 Aligned_cols=67 Identities=6% Similarity=0.053 Sum_probs=42.4
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHH---HHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQ---TTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
+|.|..|+|++|++||+. +++++.+......- .- .+++.+.+++. +.+.+++++ .++...+|.+|+
T Consensus 2 il~in~Gsts~k~alf~~-~~~~~~~~~~~~~~---~~----~~~~~~~~q~~~r~~~i~~~l~~---~~~~~~~i~av~ 70 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFED-ERPLFEETLRHSVE---EL----GRFKNVIDQFEFRKQVILQFLEE---HGISISKLDAVV 70 (351)
T ss_pred EEEEecCchhheEEEEeC-CCceeeeeecCCHH---Hh----cccccHHHHHHHHHHHHHHHHHH---cCCCcccccEEE
Confidence 689999999999999999 88877654433310 00 12233444555 444444444 566667788884
Q ss_pred E
Q psy1582 92 I 92 (129)
Q Consensus 92 i 92 (129)
-
T Consensus 71 ~ 71 (351)
T TIGR02707 71 G 71 (351)
T ss_pred E
Confidence 3
No 56
>PTZ00288 glucokinase 1; Provisional
Probab=97.09 E-value=0.0068 Score=47.97 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=36.1
Q ss_pred CCeEEEEeCCCCceeEEEEeC--CCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHH
Q psy1582 12 TQIRDRLSATYHTSRVLIISA--LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIE 75 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~--~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~ 75 (129)
.+|++|+|||+|++|+++++. .++..+...+++++.. ..+..+.++.+.+.++++.+
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~ 83 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNVT-------KTDIRELLEFFDEVLQKLKK 83 (405)
T ss_pred CCeEEEEEecCCceEEEEEeccCCCCCceeEEEEecccc-------cccHHHHHHHHHHHHHHHHh
Confidence 468999999999999999985 1222344444444310 13555566666666665554
No 57
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=97.02 E-value=0.017 Score=44.83 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=42.5
Q ss_pred eEEEEeCCCCceeEEEEeCC-CC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582 14 IRDRLSATYHTSRVLIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~-~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I 90 (129)
+++|||||++++|+++.... ++ ++++....|.. .-..|.. .|++.+.+.+.++++++-+. ++...++ ..+
T Consensus 1 ~~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~--gi~~G~I-~d~~~~~~~i~~al~~~e~~---~~~~i~~-v~~ 73 (371)
T TIGR01174 1 LIVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR--GIKKGVI-NDIEAAVGSIQRAIEAAELM---AGCEIRS-VIV 73 (371)
T ss_pred CEEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--CccCcEE-EcHHHHHHHHHHHHHHHHHH---hCCcccE-EEE
Confidence 36899999999999997641 34 34444443321 1123433 57777777777776665433 4544333 234
Q ss_pred EEec
Q psy1582 91 GITN 94 (129)
Q Consensus 91 gis~ 94 (129)
++++
T Consensus 74 ~v~g 77 (371)
T TIGR01174 74 SISG 77 (371)
T ss_pred EEcc
Confidence 5544
No 58
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.01 E-value=0.017 Score=43.09 Aligned_cols=57 Identities=7% Similarity=0.034 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHH
Q psy1582 11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 71 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 71 (129)
...+++||||||+++|+++.+. ++++++....+-.. -..|. -.|.+.....+...++
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~-~~~~~~~~~~~~~~--vr~G~-i~di~~a~~~i~~~~~ 78 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDE-DGQPVAGALEWADV--VRDGI-VVDFIGAVTIVRRLKA 78 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcC-CCCEEEEEeccccc--cCCCE-EeeHHHHHHHHHHHHH
Confidence 4679999999999999999987 77766655443321 23354 3455555544444443
No 59
>PLN02362 hexokinase
Probab=96.98 E-value=0.0085 Score=48.71 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=44.5
Q ss_pred CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCc---EEEE--EEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582 5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQE---EVVS--HSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~---iv~~--~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
-|.+... +.+++||+|+|+.|++++.. .|+ ++.. .+++.+. .......+++|+.|.+++.+.+++
T Consensus 88 lPtG~E~-G~fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~Ip~-----~l~~~~~~eLFd~IA~~i~~fl~~ 157 (509)
T PLN02362 88 LPTGSEI-GTYYALDLGGTNFRVLRVQL-GGQRSSILSQDVERHPIPQ-----HLMNSTSEVLFDFIASSLKQFVEK 157 (509)
T ss_pred CCCCCcc-eeEEEEecCCceEEEEEEEe-cCCCcceeeceeEEEecCh-----hhccCCHHHHHHHHHHHHHHHHHh
Confidence 3555543 45789999999999999998 663 2222 2333321 112346788999999999999876
No 60
>PTZ00107 hexokinase; Provisional
Probab=96.94 E-value=0.011 Score=47.64 Aligned_cols=69 Identities=6% Similarity=0.138 Sum_probs=43.5
Q ss_pred cCCCCCCCeEEEEeCCCCceeEEEEeCCCCc-EEEEEE--eeecccc---CCCCe-EEECHHHHHHHHHHHHHHHHHH
Q psy1582 6 PQAVAPTQIRDRLSATYHTSRVLIISALTQE-EVVSHS--MDISTIS---PQEGW-AEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 6 ~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~-iv~~~~--~~~~~~~---~~~g~-~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
|.+.. .+.+|+||+|+|+.|++++.. .|. .....+ +..+... +.+.. .+...+++|+.+.+++.+.+++
T Consensus 68 PtG~E-~G~fLAlDlGGTN~RV~~V~L-~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~ 143 (464)
T PTZ00107 68 PTGKE-KGVYYAIDFGGTNFRAVRVSL-RGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEE 143 (464)
T ss_pred CCCCc-cceEEEEecCCceEEEEEEEe-CCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 44443 345789999999999999998 664 322222 2222110 11110 1125788999999999999876
No 61
>PF13941 MutL: MutL protein
Probab=96.86 E-value=0.0072 Score=48.49 Aligned_cols=72 Identities=8% Similarity=0.025 Sum_probs=47.4
Q ss_pred EEEEeCCCCceeEEEEe--CCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCC--CCeeEE
Q psy1582 15 RDRLSATYHTSRVLIIS--ALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR--DDIVTL 90 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d--~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~I~~I 90 (129)
+|.+|+|+|.+|+.+|| ..+.+++++++.|+.. + +.++...+..+++++-+. .+..+ .-..-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv--------~--~~Dv~~G~~~A~~~l~~~---~~~~~~~~~~~~l 68 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTV--------E--PGDVTIGLNNALEQLEEQ---TPASPDDGYDKVL 68 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCc--------C--cccHHHHHHHHHHHHHHh---cCCCcccCceEEE
Confidence 58899999999999999 4477888888887752 1 234566777777776554 23221 223445
Q ss_pred EEecCcceE
Q psy1582 91 GITNQRETT 99 (129)
Q Consensus 91 gis~~~~g~ 99 (129)
.+|+...|+
T Consensus 69 a~SSAaGGL 77 (457)
T PF13941_consen 69 ACSSAAGGL 77 (457)
T ss_pred EECCCCCcc
Confidence 566655443
No 62
>PRK13317 pantothenate kinase; Provisional
Probab=96.80 E-value=0.007 Score=45.55 Aligned_cols=27 Identities=4% Similarity=0.204 Sum_probs=23.0
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
.+.+|||+|+|.+|.+++|. ++++..+
T Consensus 2 ~~~iGIDiGstt~K~v~~~~-~~~~~~~ 28 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEE-KKQRTFK 28 (277)
T ss_pred CceEEEEeCcccEEEEEEcC-CCeEEEE
Confidence 47899999999999999998 7766643
No 63
>PRK13324 pantothenate kinase; Reviewed
Probab=96.29 E-value=0.032 Score=41.63 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=38.4
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 94 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~ 94 (129)
+|.||+|.|++|.+++|. ++++...+.++.. .....+++... +..++.. .+....++..+.+|+
T Consensus 2 iL~iDiGNT~ik~gl~~~--~~~~~~~r~~t~~-------~~~t~de~~~~----l~~~~~~---~~~~~~~i~~viisS 65 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG--DRIVSQIRYATSS-------VDSTSDQMGVF----LRQALRE---NSVDLGKIDGCGISS 65 (258)
T ss_pred EEEEEeCCCceEEEEEEC--CEEEEEEEEecCc-------cccchHHHHHH----HHHHHHh---cCCCccCCCeEEEEe
Confidence 689999999999999995 4566544443310 11223333333 3344433 344455677777776
Q ss_pred Cc
Q psy1582 95 QR 96 (129)
Q Consensus 95 ~~ 96 (129)
..
T Consensus 66 Vv 67 (258)
T PRK13324 66 VV 67 (258)
T ss_pred Cc
Confidence 43
No 64
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=96.27 E-value=0.084 Score=42.05 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=38.3
Q ss_pred eEEEEeCCCCceeEEEEeCCCC-cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy1582 14 IRDRLSATYHTSRVLIISALTQ-EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD 85 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g-~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (129)
+++|+||||+++++.+-....+ ++-....-..+..--..|.. .|.+...+.+.++++++=.. +|....
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGik~G~I-~di~~~~~sI~~av~~AE~m---ag~~i~ 75 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGIKKGVI-VDLDAAAQSIKKAVEAAERM---AGCEIK 75 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCcccccceE-EcHHHHHHHHHHHHHHHHHh---cCCCcc
Confidence 8999999999999998875333 22222211111111123433 47776666666666555332 565443
No 65
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=95.85 E-value=0.014 Score=44.86 Aligned_cols=30 Identities=3% Similarity=-0.071 Sum_probs=25.4
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDIS 46 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~ 46 (129)
||+|||+-++|++++|. +|+++...+.++|
T Consensus 1 ~G~DiGGA~~K~a~~~~-~g~~~~v~~~~~p 30 (318)
T TIGR03123 1 LGIDIGGANTKAAELDE-DGRIKEVHQLYCP 30 (318)
T ss_pred CccccccceeeeEEecC-CCceeEEEEecCc
Confidence 68999999999999998 8888876666665
No 66
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=95.65 E-value=0.062 Score=41.21 Aligned_cols=21 Identities=5% Similarity=-0.083 Sum_probs=17.6
Q ss_pred EEEeCCCCceeEEEEeCCCCcE
Q psy1582 16 DRLSATYHTSRVLIISALTQEE 37 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~i 37 (129)
|.-|||+|++|.++++. .+..
T Consensus 1 Lv~DIGGTn~Rlal~~~-~~~~ 21 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEP-DGGP 21 (316)
T ss_dssp EEEEEETTEEEEEEEEC-TCGG
T ss_pred CeEEeCcccEEEEEEEc-CCCC
Confidence 56799999999999998 4543
No 67
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.65 E-value=0.11 Score=39.28 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=21.5
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
.+|||+|+|.+|.+.+|. +++++..
T Consensus 2 ~iGiDiGgT~~Kiv~~~~-~~~~~f~ 26 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEP-KGRRKFK 26 (279)
T ss_pred eEEEEeCcceEEEEEEcC-CCcEEEE
Confidence 589999999999999988 8877643
No 68
>PRK09604 UGMP family protein; Validated
Probab=95.63 E-value=0.12 Score=39.79 Aligned_cols=81 Identities=10% Similarity=0.151 Sum_probs=52.7
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeee-ccccCCCCeEE-ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDI-STISPQEGWAE-QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~-~~~~~~~g~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
++||||-.+..+.++|+|. +++++....... ....+..|.+. .....-.+.+...+++++++ +++++.+|.+|+
T Consensus 2 ~iLgIdTS~~~~sval~~~-~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~---~~~~~~did~ia 77 (332)
T PRK09604 2 LILGIETSCDETSVAVVDD-GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKE---AGLTLEDIDAIA 77 (332)
T ss_pred eEEEEEccccceEEEEEEC-CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEE
Confidence 6899999888899999997 668886554322 11111123211 11233445666777777776 788899999999
Q ss_pred EecCcceE
Q psy1582 92 ITNQRETT 99 (129)
Q Consensus 92 is~~~~g~ 99 (129)
++. +||.
T Consensus 78 vt~-GPG~ 84 (332)
T PRK09604 78 VTA-GPGL 84 (332)
T ss_pred Eec-CCCc
Confidence 986 4443
No 69
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=95.58 E-value=0.12 Score=40.17 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=54.7
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCC-CeEEE-CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQE-GWAEQ-DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~-g~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
.+||||-....+.++|+|. +|+++........ .+.. |.+.. ....-.+.+...+++++++ +++.+++|.+|+
T Consensus 2 ~iLgIETScd~tsvAl~~~-~~~il~~~~~sq~--~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~---a~~~~~did~Ia 75 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTS-DGEILSNVRETYI--TPPGTGFLPRETAQHHREHILSLVKEALEE---AKITPSDISLIC 75 (345)
T ss_pred eEEEEEccchhhEEEEEEC-CCcEEEEEEeecc--ccCCCCcCchHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEE
Confidence 5899999999999999997 7788776544332 1112 33221 2233445666677777776 788899999999
Q ss_pred EecCcceE
Q psy1582 92 ITNQRETT 99 (129)
Q Consensus 92 is~~~~g~ 99 (129)
++. +||.
T Consensus 76 vt~-GPGl 82 (345)
T PTZ00340 76 YTK-GPGM 82 (345)
T ss_pred Eec-CCCc
Confidence 986 6775
No 70
>PRK03011 butyrate kinase; Provisional
Probab=95.51 E-value=0.027 Score=43.94 Aligned_cols=70 Identities=7% Similarity=0.142 Sum_probs=39.5
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
.+|.|.-|+||+|.++|+. + +.+.+....++...... -..++++..-..+.+++.|++.++..+++.+|+
T Consensus 3 ~il~inpgststk~a~~~~-~-~~~~~~~~~h~~~~~~~------~~~~~~q~~~r~~~i~~~l~~~g~~~~~l~av~ 72 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED-E-KPIFEETLRHSAEELEK------FKTIIDQYEFRKQAILDFLKEHGIDLSELDAVV 72 (358)
T ss_pred EEEEEcCCCchheEEEEcC-C-ceeeeeccccCHHHHhc------CCCccchHHHHHHHHHHHHHHcCCChhcceEEE
Confidence 5899999999999999985 4 55655555554321100 011122222222222333333677778888883
No 71
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=95.45 E-value=0.07 Score=42.51 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=39.9
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
.+.+|+||+|+|++|++++.. .| ...- .+.++. .|..=.....++++|.-+.+.++..+++
T Consensus 74 ~g~~LaiD~GGTnlRvc~V~l-~g~gt~~~-~~sks~--lp~e~~~~~~~~~l~~~iadrl~~fi~~ 136 (466)
T COG5026 74 SGSVLAIDLGGTNLRVCLVVL-GGDGTFDI-EQSKSF--LPVECRDSESRDELFGFIADRLAAFIKE 136 (466)
T ss_pred CCCEEEEecCCceEEEEEEEe-CCCCCccc-ccCccc--CchhhccCCChHHHHHHHHHHHHHHHHH
Confidence 456899999999999999997 54 2221 111111 1111111237899999999999887765
No 72
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=95.39 E-value=0.21 Score=38.17 Aligned_cols=74 Identities=7% Similarity=0.049 Sum_probs=40.4
Q ss_pred CeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I 90 (129)
..++|||||++++|++.+....+ +++.....+.+...-..|.. .|++. +.+++++++++ .++.... ..+
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~i-~d~~~----~~~~l~~~~~~---~~~~~k~-v~~ 73 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGHI-VEYQA----VAEALKELLSE---LGINTKK-AAT 73 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCCc-cCHHH----HHHHHHHHHHH---cCCCcce-EEE
Confidence 46899999999999999985123 33333444443221122322 34544 45555666655 3443222 345
Q ss_pred EEecC
Q psy1582 91 GITNQ 95 (129)
Q Consensus 91 gis~~ 95 (129)
++.+.
T Consensus 74 alp~~ 78 (348)
T TIGR01175 74 AVPGS 78 (348)
T ss_pred EecCC
Confidence 55543
No 73
>KOG1369|consensus
Probab=95.38 E-value=0.13 Score=41.53 Aligned_cols=95 Identities=16% Similarity=0.086 Sum_probs=55.7
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcE--EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCC-CCCCeeE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEE--VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL-SRDDIVT 89 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~i--v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~I~~ 89 (129)
+.++++|+|+|+.|+.++.. .|.- +...+..+.. | +..+....+++|+.|..++...+++. +. .+++ .-
T Consensus 86 G~~lalDLGGTn~Rv~~v~L-~g~~~~~~~~~~~~~i--p-~~~m~gt~~~Lfd~Ia~~l~~F~~~~---~~~~~~~-l~ 157 (474)
T KOG1369|consen 86 GKFLALDLGGTNFRVLLVKL-GGGRTSVRMYNKIYAI--P-EEIMQGTGEELFDFIARCLADFLDKM---GLKGASK-LP 157 (474)
T ss_pred CCEEEEecCCCceEEEEEEe-cCCcccceeeeeeEec--C-HHHHcCchHHHHHHHHHHHHHHHHHh---ccccccc-cc
Confidence 45799999999999999998 6652 2222222211 1 11122356889999999998887752 21 2222 44
Q ss_pred EEEecCcceEEEEeCCCCcccccceeecCCC
Q psy1582 90 LGITNQRETTVVWDLNTGEPLYNAIEQGLRI 120 (129)
Q Consensus 90 Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r 120 (129)
+|++..- |++.. +.--.-.+.|....
T Consensus 158 lgFTFSf----P~~Q~-si~~g~L~~wTkGf 183 (474)
T KOG1369|consen 158 LGFTFSF----PCRQT-SIDKGTLIRWTKGF 183 (474)
T ss_pred cceEEee----eeeec-ccccceEEEecccc
Confidence 5665432 56553 33223345787644
No 74
>PLN02666 5-oxoprolinase
Probab=95.35 E-value=0.079 Score=47.54 Aligned_cols=78 Identities=8% Similarity=0.049 Sum_probs=44.9
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECH-HHHHHHHHHHHHHHHHH-H-HhCCCCCCCee
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDP-MEILQAVQTTMDRAIEK-L-SAHGLSRDDIV 88 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~-~~~~~~i~~~~~~~~~~-~-~~~~~~~~~I~ 88 (129)
..|.+|||+|+|.+-++++|. ++.-+...+.+.. .| .+| +.+.+.+..+++.++.. + ++.++++++|.
T Consensus 8 ~~~rigIDvGGTFTD~v~~~~-~~~~~~~~K~~st--tp------~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~ 78 (1275)
T PLN02666 8 RKFRFCIDRGGTFTDVYAEVP-GGSDFRVLKLLSV--DP------ANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIE 78 (1275)
T ss_pred CCEEEEEECCcCCEeEEEEec-CCCeEEEEEeCCC--CC------CChhHHHHHHHHHHHHHHhcCCcccccCCChHHcc
Confidence 568999999999999999997 5553444454431 01 233 23445555544443210 0 01355556777
Q ss_pred EEEEecCcce
Q psy1582 89 TLGITNQRET 98 (129)
Q Consensus 89 ~Igis~~~~g 98 (129)
.|..++...+
T Consensus 79 ~v~hGTT~at 88 (1275)
T PLN02666 79 WIRMGTTVAT 88 (1275)
T ss_pred EEEEechHHH
Confidence 7777765433
No 75
>PRK13320 pantothenate kinase; Reviewed
Probab=95.26 E-value=0.19 Score=37.06 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=21.0
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSH 41 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~ 41 (129)
.+|.||+|.|++|.++++. ++++...
T Consensus 3 M~L~iDiGNT~ik~~~~~~--~~~~~~~ 28 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEG--DELLEVF 28 (244)
T ss_pred eEEEEEeCCCcEEEEEEEC--CEEEEEE
Confidence 3799999999999999995 4666543
No 76
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.05 E-value=0.16 Score=37.00 Aligned_cols=30 Identities=3% Similarity=0.038 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582 11 PTQIRDRLSATYHTSRVLIISALTQEEVVSH 41 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~ 41 (129)
..++++|||+||.++-..++|. +|+.++-.
T Consensus 27 ~sk~~vGVDLGT~~iV~~vlD~-d~~Pvag~ 56 (277)
T COG4820 27 ESKLWVGVDLGTCDIVSMVLDR-DGQPVAGC 56 (277)
T ss_pred cCceEEEeecccceEEEEEEcC-CCCeEEEE
Confidence 3589999999999999999999 89888754
No 77
>PRK13331 pantothenate kinase; Reviewed
Probab=95.04 E-value=0.14 Score=38.17 Aligned_cols=61 Identities=10% Similarity=-0.078 Sum_probs=38.3
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 92 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi 92 (129)
.-+|.||+|.|+++.++|+. .+++...+ +.. ....+ ++.++.. .++.+++|..+.+
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~--~~~~~~~r--t~~--------~~t~d---------~~~~l~~---~~~~~~~i~~~ii 62 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSG--ETLVKTWD--TPH--------LDESI---------IQLLLPG---QTLLIVAPNPLVI 62 (251)
T ss_pred CcEEEEEeCCCcEEEEEEEC--CEEEEEEE--cCC--------cchHH---------HHHHHHH---cCCCccccCEEEE
Confidence 35799999999999999995 35554211 210 11111 3344444 4666667888888
Q ss_pred ecCcc
Q psy1582 93 TNQRE 97 (129)
Q Consensus 93 s~~~~ 97 (129)
|+..|
T Consensus 63 sSVVP 67 (251)
T PRK13331 63 ASVVP 67 (251)
T ss_pred EecCc
Confidence 87654
No 78
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=95.01 E-value=0.21 Score=36.63 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=30.6
Q ss_pred EEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHH
Q psy1582 17 RLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTM 70 (129)
Q Consensus 17 giDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 70 (129)
|+||||+++|+++.+. .+..++....|-. .-..|.. .|.+.....+....
T Consensus 1 g~dig~~~ik~v~~~~-~~~~~~~~~~~~~--~~~~g~I-~d~~~~~~~l~~l~ 50 (239)
T TIGR02529 1 GVDLGTANIVIVVLDE-DGQPVAGVMQFAD--VVRDGIV-VDFLGAVEIVRRLK 50 (239)
T ss_pred CCCcccceEEEEEEec-CCCEEEEEecccc--cccCCeE-EEhHHHHHHHHHHH
Confidence 7999999999999998 6655554433221 1234433 46665554444444
No 79
>PRK13326 pantothenate kinase; Reviewed
Probab=94.77 E-value=0.18 Score=37.74 Aligned_cols=28 Identities=0% Similarity=-0.073 Sum_probs=21.9
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSM 43 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~ 43 (129)
..|.||+|.|++|.++|+. ++++...+.
T Consensus 7 ~~L~IDiGNT~ik~glf~~--~~l~~~~r~ 34 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKD--NKMQIFCKL 34 (262)
T ss_pred EEEEEEeCCCeEEEEEEEC--CEEEEEEEe
Confidence 4789999999999999995 466653333
No 80
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=94.76 E-value=0.22 Score=40.59 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=54.1
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEEC-HHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQD-PMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 92 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi 92 (129)
++||||-.+..+.++|++. +|+++......+ ..+..|.+... ...-.+.+...+++++++ +++++.+|.+|++
T Consensus 2 ~il~iets~~~~s~a~~~~-~~~~~~~~~~~~--~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~id~iav 75 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDS-DGDVLFNESDPY--KPPSGGIHPREAAEHHAEAIPKVIKEALEE---AGLKPEDIDLVAF 75 (535)
T ss_pred EEEEEEccccceEEEEEeC-CCcEEEEEEeec--cCCcCCCChHHHHHHHHHHHHHHHHHHHHH---cCCCHhhCCEEEE
Confidence 6899999999999999997 678887665442 22233422111 122344566667777776 7888899999999
Q ss_pred ecCcceE
Q psy1582 93 TNQRETT 99 (129)
Q Consensus 93 s~~~~g~ 99 (129)
+. +||.
T Consensus 76 ~~-gPg~ 81 (535)
T PRK09605 76 SQ-GPGL 81 (535)
T ss_pred CC-CCCc
Confidence 85 4553
No 81
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=94.60 E-value=0.28 Score=35.00 Aligned_cols=65 Identities=11% Similarity=0.140 Sum_probs=45.9
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 94 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~ 94 (129)
+|+||-.+..+.+++++ +++++.+..... +..--+.+...+++++++ +++..++|..|.++.
T Consensus 1 iLaidTs~~~~sval~~--~~~~~~~~~~~~-------------~~~h~~~l~~~i~~~l~~---~~~~~~~i~~iav~~ 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD--DGEILAERSEEA-------------GRNHSEILLPMIEELLAE---AGLSLQDLDAIAVGV 62 (202)
T ss_pred CEEEECCCcceEEEEEE--CCEEEEEEeehh-------------hHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 48999999999999998 467776543322 222344566667777776 788888998888875
Q ss_pred Ccce
Q psy1582 95 QRET 98 (129)
Q Consensus 95 ~~~g 98 (129)
|||
T Consensus 63 -GPG 65 (202)
T TIGR03725 63 -GPG 65 (202)
T ss_pred -CCC
Confidence 454
No 82
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=94.59 E-value=0.24 Score=38.01 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=34.1
Q ss_pred EEeCCCCceeEEEEeCCCCc---EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 17 RLSATYHTSRVLIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 17 giDiGtt~ik~~l~d~~~g~---iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
|||||+.++|++-+.. .++ +......++|...-.+| .-.|++.+ .+.+++++++ .++.. +-..+++.
T Consensus 1 GiDiG~~siK~v~l~~-~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l----~~~L~~~~~~---~~~~~-k~v~~aip 70 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSK-KGNRFQLEAFASIPLPPGAISDG-EIVDPEAL----AEALKELLKE---NKIKG-KKVVLAIP 70 (340)
T ss_dssp EEEE-SSEEEEEEEET-TTT--EEEEEEEEE--TTSEETT-EES-HHHH----HHHHHHHHHH---HT-----EEEEEE-
T ss_pred CeecCCCeEEEEEEEE-cCCccEEEEEEEEECCCCCccCC-CcCCHHHH----HHHHHHHHHH---cCCCC-CeEEEEeC
Confidence 8999999999999997 543 33445555542211122 22355554 4455555554 23322 23346666
Q ss_pred cC
Q psy1582 94 NQ 95 (129)
Q Consensus 94 ~~ 95 (129)
+.
T Consensus 71 ~~ 72 (340)
T PF11104_consen 71 GS 72 (340)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 83
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.15 Score=37.06 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=49.9
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
.+|+||-.+..+-+++++.++++++.+...... .+ .-+.+.-.+++++++ ++++..++.+|.++
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~----------r~---hse~l~~~i~~ll~~---~~~~~~dld~iav~ 65 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLK----------RN---HAERLMPMIDELLKE---AGLSLQDLDAIAVA 65 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEecc----------cc---HHHHHHHHHHHHHHH---cCCCHHHCCEEEEc
Confidence 579999999999999888656778777665442 12 234666677788777 67888889988888
Q ss_pred cCcce
Q psy1582 94 NQRET 98 (129)
Q Consensus 94 ~~~~g 98 (129)
. |||
T Consensus 66 ~-GPG 69 (220)
T COG1214 66 K-GPG 69 (220)
T ss_pred c-CCC
Confidence 5 455
No 84
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=94.38 E-value=0.26 Score=37.44 Aligned_cols=79 Identities=10% Similarity=0.175 Sum_probs=52.5
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccc-cCCCCeE-EECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTI-SPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~-~~~~g~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis 93 (129)
||||-.+..+.++|+|. +++++.......... ....|.+ +.....-.+.+...+++++++ +++++++|.+|+++
T Consensus 1 LaidTs~~~~sval~~~-~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~did~iav~ 76 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDE-EGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIE---SNVDKSEIDLIAYT 76 (305)
T ss_pred CEEecCccceEEEEEEC-CCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEe
Confidence 58999999999999996 578887665443211 1122322 122333445566667777776 78899999999998
Q ss_pred cCcceE
Q psy1582 94 NQRETT 99 (129)
Q Consensus 94 ~~~~g~ 99 (129)
. +||.
T Consensus 77 ~-GPG~ 81 (305)
T TIGR00329 77 Q-GPGL 81 (305)
T ss_pred c-CCCc
Confidence 6 5553
No 85
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=94.33 E-value=0.4 Score=36.66 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=52.3
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeee-ccccCCCCeEEE-CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI-STISPQEGWAEQ-DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 92 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~-~~~~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi 92 (129)
+|+||-.+..+.++|++. +++++....... ....+..|.+.. ....--+.+...+++++++ +++..++|.+|++
T Consensus 1 iLaIdTs~~~~sval~~~-~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~id~iav 76 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDD-GKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAE---AGLTLSDIDAIAV 76 (314)
T ss_pred CEEEECcccceEEEEEEC-CceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEE
Confidence 589999999999999996 555776554422 111222332221 2333445666677777776 7888899999999
Q ss_pred ecCcceE
Q psy1582 93 TNQRETT 99 (129)
Q Consensus 93 s~~~~g~ 99 (129)
+. +||.
T Consensus 77 ~~-GPGs 82 (314)
T TIGR03723 77 TA-GPGL 82 (314)
T ss_pred ec-CCCh
Confidence 86 5663
No 86
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=94.32 E-value=0.21 Score=40.20 Aligned_cols=29 Identities=3% Similarity=-0.134 Sum_probs=22.9
Q ss_pred EeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582 18 LSATYHTSRVLIISALTQEEVVSHSMDIS 46 (129)
Q Consensus 18 iDiGtt~ik~~l~d~~~g~iv~~~~~~~~ 46 (129)
+|+|+|.+|+.+||.++++++...+..++
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tp 29 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITP 29 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCc
Confidence 59999999999999745777777665553
No 87
>PRK10854 exopolyphosphatase; Provisional
Probab=94.32 E-value=0.47 Score=38.69 Aligned_cols=80 Identities=10% Similarity=0.118 Sum_probs=47.8
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeecccc--CCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI 87 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~--~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I 87 (129)
+..+.+||||+.++|..|++..+| +++.+.+.....-. ...| .-+++ -+++..+++++..+.++ ....+++
T Consensus 10 ~~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g--~Ls~e-~~~r~~~~L~~F~~~~~--~~~v~~v 84 (513)
T PRK10854 10 PQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDN--MLSEE-AMERGLNCLSLFAERLQ--GFSPANV 84 (513)
T ss_pred CCEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCC--CcCHH-HHHHHHHHHHHHHHHHH--hCCCCeE
Confidence 347899999999999999997333 34444444443211 1122 12333 35566667766655442 3344678
Q ss_pred eEEEEecCc
Q psy1582 88 VTLGITNQR 96 (129)
Q Consensus 88 ~~Igis~~~ 96 (129)
.+++.+..+
T Consensus 85 ~~vATsAlR 93 (513)
T PRK10854 85 CIVGTHTLR 93 (513)
T ss_pred EEEehHHHH
Confidence 888877654
No 88
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=94.10 E-value=0.22 Score=36.79 Aligned_cols=27 Identities=4% Similarity=-0.144 Sum_probs=21.0
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEee
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMD 44 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~ 44 (129)
|.||+|.|++|+++|+. ++++...+.+
T Consensus 2 L~iDiGNT~i~~g~~~~--~~~~~~~r~~ 28 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG--NKVYQFWRLA 28 (243)
T ss_pred EEEEECCCcEEEEEEEC--CEEEEEEEec
Confidence 78999999999999995 4666544443
No 89
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.04 E-value=0.29 Score=41.32 Aligned_cols=32 Identities=3% Similarity=0.016 Sum_probs=26.5
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
++.+|||+|+|.+=++++|. ++.++...+.++
T Consensus 2 ~~~iGID~GGTfTDaV~~~~-~~g~~~~~K~lT 33 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDE-DGGVLATIKVLT 33 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeC-CCCEEEEEEccC
Confidence 57899999999999999998 555777666654
No 90
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.61 E-value=0.22 Score=38.46 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=37.6
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCe---EEECHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGW---AEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD 86 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (129)
..+|||||++++|++-... .|.-..-.++.... .|.+-. .-.+++ ++.+.+++++.+ +++..++
T Consensus 11 ~~vGIdI~~~sVKvvqLs~-~g~~~kLe~y~~~~-lp~~iv~dg~ivd~~----av~~~Lk~ala~---~gi~~k~ 77 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSR-SGNRYKLEKYASEP-LPENIVADGKIVDYD----AVASALKRALAK---LGIKSKN 77 (354)
T ss_pred ceeeEeeccceEEEEEEcc-cCCceeeeeeeecc-cCccccccCCcccHH----HHHHHHHHHHHh---cCcchhh
Confidence 5899999999999999996 66655444433221 122111 123554 455556666665 4554333
No 91
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=93.50 E-value=0.16 Score=38.44 Aligned_cols=33 Identities=3% Similarity=-0.041 Sum_probs=28.0
Q ss_pred CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582 10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSM 43 (129)
Q Consensus 10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~ 43 (129)
|...+++.||=|||++|+-+++. +|+++.+.+-
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~-dg~~l~~r~~ 34 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRG-DGAVLAERRS 34 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcC-Ccceeeeecc
Confidence 34578999999999999999999 8988876543
No 92
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=93.14 E-value=0.49 Score=35.83 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=44.1
Q ss_pred EEEEeCCCCceeEEEEeCCCC--cEEEEEEeeecccc--CCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~--~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I 90 (129)
+.+||+|+.++|..+++..++ +++.+.+.+..+-. ...| ..+++. ++.+.+++++..+.++ .....++..+
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e~-i~~~~~~l~~f~~~~~--~~~v~~i~~v 76 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEEA-IERALEALKRFAELLR--GFPVDEVRAV 76 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHHH-HHHHHHHHHHHHHHHH--hCCCCeEEEE
Confidence 478999999999999996223 34444444433211 1122 223443 4555666666655442 2334578888
Q ss_pred EEecCc
Q psy1582 91 GITNQR 96 (129)
Q Consensus 91 gis~~~ 96 (129)
+.+..+
T Consensus 77 aTsa~R 82 (300)
T TIGR03706 77 ATAALR 82 (300)
T ss_pred EcHHHH
Confidence 777654
No 93
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=93.09 E-value=0.59 Score=35.78 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=50.4
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEE-ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAE-QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 94 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~ 94 (129)
||||-.+..+.++|++. +++++...+.... .+..|.+. .....-.+.+...+++++++ +++++.+|.+|+++.
T Consensus 1 Lgiets~~~~s~al~~~-~~~i~~~~~~~~~--~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~did~Iavt~ 74 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDE-DGEILANVSDTYV--PEKGGIHPREAAEHHAEVAPKLIKEALEE---AGVSLEDIDAVAFSQ 74 (322)
T ss_pred CEEeccccceEEEEEEC-CCeEEEEEEeecc--cCcCCcChhHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 58888888899999997 6777775554432 22334332 12223344566667777776 788899999999986
Q ss_pred Ccce
Q psy1582 95 QRET 98 (129)
Q Consensus 95 ~~~g 98 (129)
+||
T Consensus 75 -gPg 77 (322)
T TIGR03722 75 -GPG 77 (322)
T ss_pred -CCc
Confidence 344
No 94
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=93.01 E-value=0.32 Score=37.14 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=19.8
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
...++| |||+|+.|.+|+....++....
T Consensus 6 ~p~Lvg-DIGGTnaRfaLv~~a~~~~~~~ 33 (320)
T COG0837 6 YPRLVG-DIGGTNARFALVEIAPAEPLQA 33 (320)
T ss_pred CceEEE-ecCCcceEEEEeccCCCCcccc
Confidence 344555 9999999999987635554443
No 95
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=92.84 E-value=0.89 Score=29.63 Aligned_cols=29 Identities=7% Similarity=0.036 Sum_probs=20.4
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
+++||+|+++++++++.. +........++
T Consensus 1 i~~iDiGs~~~~~~i~~~--~~~~~~~vl~~ 29 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED--GSDGYIRVLGV 29 (120)
T ss_dssp EEEEEE-SSSEEEEEEET--TEEEEEEEES-
T ss_pred CEEEEcCCCcEEEEEEEe--CCCCcEEEEEE
Confidence 578999999999999996 45554444444
No 96
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=92.61 E-value=0.22 Score=40.59 Aligned_cols=32 Identities=9% Similarity=-0.015 Sum_probs=27.9
Q ss_pred CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEE
Q psy1582 11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHS 42 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~ 42 (129)
.+.|=+++|+|||.+++.++|+.+|+++....
T Consensus 162 ~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~ 193 (614)
T COG3894 162 NEAYGVAVDLGTSGIRAQLVDLKSGEVVATVI 193 (614)
T ss_pred ceeeeeEEecccceeeeEEEeccCCcEEEeee
Confidence 35688999999999999999998999987653
No 97
>PRK14878 UGMP family protein; Provisional
Probab=92.21 E-value=0.86 Score=34.97 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=50.6
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEE-CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQ-DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 94 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~ 94 (129)
||||-.+..+.++|++. ++++......+ ..+..|.+.. ....-.+.+...+++++++ +++++.+|.+|+++.
T Consensus 1 l~iets~~~~s~al~~~--~~i~~~~~~~~--~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~---a~~~~~did~Iavt~ 73 (323)
T PRK14878 1 LGIESTAHTLGVGIVKE--DKVLANVRDTY--VPEKGGIHPREAAQHHAEVAPELLRKALEK---AGISIEDIDAVAVSQ 73 (323)
T ss_pred CEEecCCcccEEEEEEC--CEEEEEEEEec--ccCcCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 58898888899999984 55776655533 2233444322 1223344566777788776 789999999999986
Q ss_pred CcceE
Q psy1582 95 QRETT 99 (129)
Q Consensus 95 ~~~g~ 99 (129)
+||.
T Consensus 74 -gPG~ 77 (323)
T PRK14878 74 -GPGL 77 (323)
T ss_pred -CCCc
Confidence 4543
No 98
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=92.02 E-value=0.85 Score=32.59 Aligned_cols=23 Identities=0% Similarity=-0.122 Sum_probs=18.0
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVV 39 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~ 39 (129)
+|.||+|.|++|.++++. + +++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~-~-~~~~ 23 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDG-D-KLID 23 (206)
T ss_dssp EEEEEE-SSEEEEEEEET-T-EEEE
T ss_pred CEEEEECCCeEEEEEEEC-C-EEEe
Confidence 578999999999999996 4 4444
No 99
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.96 E-value=0.33 Score=39.55 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=46.5
Q ss_pred CeEEEEeCCCCceeEEEEeCCC-C--cEEEEEEeeeccc--cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582 13 QIRDRLSATYHTSRVLIISALT-Q--EEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI 87 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~-g--~iv~~~~~~~~~~--~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I 87 (129)
+.+.+||+||.++|.+|++. . | .++.+.+.....- ....| .-++ +-.++..++++.+.+.+ .+....+|
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~-~~~~~~~l~~~k~~vrLgegl~~~g--~L~~-eai~R~~~aL~~f~e~~--~~~~~~~v 76 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEI-TPGSFQVLFREKRIVRLGEGLDATG--NLSE-EAIERALSALKRFAELL--DGFGAEEV 76 (492)
T ss_pred ceEEEEEecCCeEEEEEEec-cCCccchhhhhhhheehhcCccccC--CcCH-HHHHHHHHHHHHHHHHH--hhCCCCEE
Confidence 46789999999999999996 3 3 3333333222111 11122 1233 34566667777776654 34556778
Q ss_pred eEEEEecCc
Q psy1582 88 VTLGITNQR 96 (129)
Q Consensus 88 ~~Igis~~~ 96 (129)
..++.+..+
T Consensus 77 ~~vATsA~R 85 (492)
T COG0248 77 RVVATSALR 85 (492)
T ss_pred EEehhHHHH
Confidence 888877654
No 100
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=91.90 E-value=0.72 Score=34.34 Aligned_cols=29 Identities=3% Similarity=-0.112 Sum_probs=23.2
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
.|.||+|.|+++.++++ +++.....+.++
T Consensus 2 ~L~iDiGNT~~~~a~~~--~~~~~~~~r~~t 30 (251)
T COG1521 2 LLLIDIGNTRIVFALYE--GGKVVQTWRLAT 30 (251)
T ss_pred eEEEEeCCCeEEEEEec--CCeEEEEEeecc
Confidence 58899999999999999 467766655544
No 101
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=91.76 E-value=0.58 Score=35.24 Aligned_cols=20 Identities=0% Similarity=-0.162 Sum_probs=16.7
Q ss_pred CeEEEEeCCCCceeEEEEeC
Q psy1582 13 QIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~ 32 (129)
..++|||||+-++|.+.-|-
T Consensus 3 ~kilGiDIGGAntk~a~~DG 22 (330)
T COG1548 3 MKILGIDIGGANTKIASSDG 22 (330)
T ss_pred ceEEEeeccCccchhhhccC
Confidence 45799999999999998443
No 102
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.93 Score=35.21 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=54.6
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeecc-ccCCCCeEE-ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDIST-ISPQEGWAE-QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~-~~~~~g~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
.+|||.-.-..+-++|++. +. +++......-. +.+..|.+. .....-.+.+..++++++++ ++++.++|.+|+
T Consensus 2 ~iLGIEtScDeT~vaIv~~-~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~e---A~~~~~dID~IA 76 (342)
T COG0533 2 IILGIETSCDETGVAIVDE-EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAE---AGVSLEDIDAIA 76 (342)
T ss_pred eEEEEEcccccceeEEEec-cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCcccCCEEE
Confidence 5789998888999999997 55 66544332221 222334432 22333455666777777776 899889999999
Q ss_pred EecCcceEEE
Q psy1582 92 ITNQRETTVV 101 (129)
Q Consensus 92 is~~~~g~v~ 101 (129)
++. +||++.
T Consensus 77 ~T~-gPGL~g 85 (342)
T COG0533 77 VTA-GPGLGG 85 (342)
T ss_pred Eec-CCCchh
Confidence 985 688754
No 103
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=91.59 E-value=0.43 Score=37.69 Aligned_cols=30 Identities=7% Similarity=0.043 Sum_probs=23.7
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEee
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMD 44 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~ 44 (129)
+|.|..|+||+|++||+..+.+++.+....
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~~e 31 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLASGLVE 31 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEcCChHhheeeeEECCCCCeeeechhe
Confidence 689999999999999998455666654443
No 104
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=91.45 E-value=0.7 Score=30.71 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=25.1
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
++|||+|....-+++++. .|+++....++.
T Consensus 1 ~vGiDv~k~~~~v~v~~~-~~~~~~~~~~~~ 30 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDP-NGEKLRRFKFEN 30 (144)
T ss_pred eEEEEcccCeEEEEEEcC-CCcEEEEEEEec
Confidence 689999999999999999 887776666544
No 105
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=90.81 E-value=1.9 Score=35.03 Aligned_cols=80 Identities=6% Similarity=0.111 Sum_probs=48.1
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCc--EEEEEEeeeccc--cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQE--EVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI 87 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~--iv~~~~~~~~~~--~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I 87 (129)
..++..||||+.++|..|++..++. ++...+.....- ....| .-+++ -++...++++...+.++ .....++
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e-~i~r~~~~L~~F~~~~~--~~~v~~i 79 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSNE-AMERGWQCLRLFAERLQ--DIPPSQI 79 (496)
T ss_pred CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCHH-HHHHHHHHHHHHHHHHH--hCCCCeE
Confidence 5678999999999999999963343 333444444331 11222 12333 35566677776655442 3344678
Q ss_pred eEEEEecCc
Q psy1582 88 VTLGITNQR 96 (129)
Q Consensus 88 ~~Igis~~~ 96 (129)
.+++.+..+
T Consensus 80 ~~vATsAvR 88 (496)
T PRK11031 80 RVVATATLR 88 (496)
T ss_pred EEEEeHHHH
Confidence 888877654
No 106
>CHL00094 dnaK heat shock protein 70
Probab=90.36 E-value=0.31 Score=40.63 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=17.9
Q ss_pred CeEEEEeCCCCceeEEEEeC
Q psy1582 13 QIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~ 32 (129)
.+++|||+|||++++++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~ 21 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEG 21 (621)
T ss_pred CceEEEEeCcccEEEEEEEC
Confidence 36899999999999999974
No 107
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.80 E-value=3.3 Score=31.17 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVV 39 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~ 39 (129)
...++|||=|||.+|++++|. ++....
T Consensus 2 ~m~fVGiDHGTsgi~~ai~d~-e~~~~F 28 (332)
T COG4020 2 TMMFVGIDHGTSGIKFAIYDG-EKDPEF 28 (332)
T ss_pred ceEEEeecCCCcceEEEEEcC-CCCceE
Confidence 456899999999999999997 665443
No 108
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=89.70 E-value=1.4 Score=30.16 Aligned_cols=30 Identities=10% Similarity=-0.058 Sum_probs=19.9
Q ss_pred CeEEEEeCCCC----ceeEEEEeCCCCcEEEEEEe
Q psy1582 13 QIRDRLSATYH----TSRVLIISALTQEEVVSHSM 43 (129)
Q Consensus 13 ~~~lgiDiGtt----~ik~~l~d~~~g~iv~~~~~ 43 (129)
.-++++..|.. .+.++++|. +|+++...+.
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld~-~G~v~d~~~~ 38 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLDE-NGEVLDHLKL 38 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE-T-TS-EEEEEEE
T ss_pred CEEEEEEcCCCCCCCCEEEEEECC-CCcEEEEEEE
Confidence 45788888854 589999999 9999998777
No 109
>PRK13410 molecular chaperone DnaK; Provisional
Probab=89.69 E-value=0.43 Score=40.23 Aligned_cols=20 Identities=10% Similarity=-0.026 Sum_probs=17.9
Q ss_pred CeEEEEeCCCCceeEEEEeC
Q psy1582 13 QIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~ 32 (129)
.+++|||+|||++++++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~ 21 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEG 21 (668)
T ss_pred CcEEEEEeCCCcEEEEEEEC
Confidence 46899999999999999974
No 110
>PRK13411 molecular chaperone DnaK; Provisional
Probab=89.68 E-value=0.43 Score=40.08 Aligned_cols=19 Identities=11% Similarity=-0.011 Sum_probs=17.4
Q ss_pred eEEEEeCCCCceeEEEEeC
Q psy1582 14 IRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~ 32 (129)
.++|||+|||++++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG 21 (653)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 6899999999999999974
No 111
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=89.13 E-value=2.8 Score=28.52 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=30.7
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEE---EEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEV---VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv---~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
+||||-|.+++=.++++. +++.+ ......++. ..+..+=+..+.+.+.+++++
T Consensus 1 ILGIDPgl~~tG~avi~~-~~~~~~~i~~G~I~t~~--------~~~~~~Rl~~I~~~l~~li~~ 56 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE-DGGKLRLIDYGTIKTSS--------KDSLPERLKEIYEELEELIEE 56 (149)
T ss_dssp EEEEE--SSEEEEEEEEE-ETTEEEEEEEEEEE-----------S--HHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCCCCeeEEEEEe-eCCEEEEEEeCeEECCC--------CCCHHHHHHHHHHHHHHHHHh
Confidence 689999999999999998 66443 333333321 112333344666777777776
No 112
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=88.92 E-value=0.4 Score=39.98 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=17.5
Q ss_pred eEEEEeCCCCceeEEEEeC
Q psy1582 14 IRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~ 32 (129)
.++|||+|||++++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999984
No 113
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=88.66 E-value=0.6 Score=36.28 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=31.0
Q ss_pred EEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHH
Q psy1582 17 RLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQ 64 (129)
Q Consensus 17 giDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~ 64 (129)
|||=||+++..+.+|. .|+++...++|... +..+|..+++
T Consensus 1 GIDpGT~s~dv~~~dd-~g~v~~~~~ipt~~-------v~~~p~~iv~ 40 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDD-DGKVIFYFSIPTEE-------VAKNPSIIVE 40 (343)
T ss_pred CCCCCCCcEEEEEEcc-CCcEEEEeeccHHH-------hhhCHHHHHH
Confidence 7899999999999997 79999888876643 3456654443
No 114
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=88.65 E-value=5.6 Score=27.61 Aligned_cols=23 Identities=4% Similarity=-0.087 Sum_probs=20.2
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCc
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQE 36 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~ 36 (129)
..+||||-|.+++=.++++. +++
T Consensus 2 m~iLGIDPgl~~tG~avi~~-~~~ 24 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEV-EGR 24 (164)
T ss_pred CEEEEEccccCceeEEEEEe-cCC
Confidence 36899999999999999998 665
No 115
>PRK07058 acetate kinase; Provisional
Probab=88.47 E-value=1 Score=35.64 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=25.0
Q ss_pred CCCCeEEEEeCCCCceeEEEEeCCCC--cEEEEE
Q psy1582 10 APTQIRDRLSATYHTSRVLIISALTQ--EEVVSH 41 (129)
Q Consensus 10 ~~~~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~ 41 (129)
|+++++|.|..|+||+|+.|||..+. +++.+.
T Consensus 1 ~~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G 34 (396)
T PRK07058 1 MSKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKG 34 (396)
T ss_pred CCCCEEEEEECChHhheeEEEecCCCCceEEEEE
Confidence 36789999999999999999996223 455544
No 116
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=88.19 E-value=0.55 Score=38.84 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=17.1
Q ss_pred eEEEEeCCCCceeEEEEeC
Q psy1582 14 IRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~ 32 (129)
.++|||+|||++++++++.
T Consensus 1 ~viGIDlGtt~s~va~~~~ 19 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEG 19 (595)
T ss_pred CEEEEEeCcccEEEEEEEC
Confidence 3799999999999999974
No 117
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=88.09 E-value=2.7 Score=28.44 Aligned_cols=33 Identities=12% Similarity=-0.055 Sum_probs=26.0
Q ss_pred CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
...+++|||=|+|.-- +++|. +|+++...+...
T Consensus 30 ~~~lIVGiDPG~ttgi-AildL-~G~~l~l~S~R~ 62 (138)
T PF04312_consen 30 RRYLIVGIDPGTTTGI-AILDL-DGELLDLKSSRN 62 (138)
T ss_pred CCCEEEEECCCceeEE-EEEec-CCcEEEEEeecC
Confidence 4578999999988665 67899 999998766533
No 118
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=88.01 E-value=3.3 Score=27.75 Aligned_cols=22 Identities=5% Similarity=-0.207 Sum_probs=19.6
Q ss_pred eEEEEeCCCCceeEEEEeCCCCc
Q psy1582 14 IRDRLSATYHTSRVLIISALTQE 36 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~ 36 (129)
.+||||+|+..+=.++-|. .+.
T Consensus 2 riL~lD~G~kriGiAvsd~-~~~ 23 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP-LGI 23 (135)
T ss_dssp EEEEEEECSSEEEEEEEET-TTS
T ss_pred eEEEEEeCCCeEEEEEecC-CCC
Confidence 5799999999999999998 654
No 119
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=87.88 E-value=0.57 Score=39.34 Aligned_cols=22 Identities=9% Similarity=-0.176 Sum_probs=18.6
Q ss_pred CCCeEEEEeCCCCceeEEEEeC
Q psy1582 11 PTQIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~ 32 (129)
....++|||+|||++++++++.
T Consensus 2 ~~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 2 TKGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred CcccEEEEEeCcccEEEEEEeC
Confidence 3456899999999999999874
No 120
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=87.58 E-value=0.81 Score=38.55 Aligned_cols=20 Identities=10% Similarity=-0.173 Sum_probs=18.1
Q ss_pred CeEEEEeCCCCceeEEEEeC
Q psy1582 13 QIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~ 32 (129)
..++|||+|||++.+++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~ 46 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDG 46 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeC
Confidence 46899999999999999985
No 121
>PRK12440 acetate kinase; Reviewed
Probab=87.33 E-value=1.5 Score=34.85 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=25.6
Q ss_pred CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEE
Q psy1582 10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHS 42 (129)
Q Consensus 10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~ 42 (129)
|...++|.|..|++|+|+.|||....+++.+..
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G~ 33 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSGL 33 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEEEEE
Confidence 456899999999999999999963445555443
No 122
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=86.89 E-value=0.56 Score=38.47 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=15.6
Q ss_pred EEEEeCCCCceeEEEEeC
Q psy1582 15 RDRLSATYHTSRVLIISA 32 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~ 32 (129)
++|||+|||++++++++.
T Consensus 1 viGID~Gt~~~~va~~~~ 18 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN 18 (602)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEeccCCEEEEEEEe
Confidence 689999999999999985
No 123
>KOG2707|consensus
Probab=86.81 E-value=2.2 Score=33.44 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=52.8
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEE-eeeccccCCCCeEEECH-HHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHS-MDISTISPQEGWAEQDP-MEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 92 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~-~~~~~~~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi 92 (129)
+|||.-.=.-+-++|+|. .++++.+.. ..........|....-. ..--+.+...+++++.. ++.++.++.+|++
T Consensus 34 VLgIETSCDDTavaVVd~-~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~a---a~~~p~dldaIAV 109 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDE-FSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDA---AGLSPKDLDAIAV 109 (405)
T ss_pred eeeEecccCcceeeeecc-cccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHH---cCCCcccceeEEE
Confidence 899998888899999998 888887632 11112222333222111 11223466666777765 7999999999999
Q ss_pred ecCcceEEE
Q psy1582 93 TNQRETTVV 101 (129)
Q Consensus 93 s~~~~g~v~ 101 (129)
+. +||+..
T Consensus 110 T~-gPGl~l 117 (405)
T KOG2707|consen 110 TR-GPGLPL 117 (405)
T ss_pred ec-CCCcee
Confidence 86 677643
No 124
>PRK00976 hypothetical protein; Provisional
Probab=86.74 E-value=4.1 Score=31.55 Aligned_cols=19 Identities=16% Similarity=0.072 Sum_probs=17.3
Q ss_pred eEEEEeCCCCceeEEEEeC
Q psy1582 14 IRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~ 32 (129)
+++|||=|||.+|+++.+.
T Consensus 2 ~~~g~dhgt~~~~~~~~~~ 20 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEG 20 (326)
T ss_pred eEEeecCCCccEEEEEEcC
Confidence 5899999999999999964
No 125
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=86.59 E-value=0.79 Score=38.24 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=18.3
Q ss_pred CCeEEEEeCCCCceeEEEEeC
Q psy1582 12 TQIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~ 32 (129)
..+++|||+|||++.+++++.
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CCeEEEEEeccccEEEEEEEC
Confidence 347999999999999999864
No 126
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=86.44 E-value=0.89 Score=37.76 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=18.5
Q ss_pred CeEEEEeCCCCceeEEEEeC
Q psy1582 13 QIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~ 32 (129)
..++|||+|||++-+++++.
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~ 24 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRG 24 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeC
Confidence 47899999999999999996
No 127
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=85.83 E-value=3 Score=33.82 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=13.2
Q ss_pred eEEEEeCCCCceeEEE
Q psy1582 14 IRDRLSATYHTSRVLI 29 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l 29 (129)
+-+|||||||.++.++
T Consensus 4 ~SVGIDIGTSTTQlvf 19 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVF 19 (473)
T ss_pred EEEEEeecCCceeEEE
Confidence 4689999999998654
No 128
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=84.64 E-value=4.6 Score=34.73 Aligned_cols=67 Identities=15% Similarity=0.297 Sum_probs=42.5
Q ss_pred CCeEEEEeCCCCc-eeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582 12 TQIRDRLSATYHT-SRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90 (129)
Q Consensus 12 ~~~~lgiDiGtt~-ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I 90 (129)
.+.++|+|-|.-. +|.+++|. +|+.+....+ | |+ .|...++.....+..++.. .+ =++.+|
T Consensus 329 ~~~~lglDPg~rtG~k~Avvd~-tGk~l~~~~I-y----p~------~p~~~~~~~~~~l~~l~~~---~~---Ve~iaI 390 (780)
T COG2183 329 PKATLGLDPGFRTGCKVAVVDD-TGKLLDTATI-Y----PH------PPVNQSDKAEATLKDLIRK---YK---VELIAI 390 (780)
T ss_pred CcceeecCCccccccEEEEEcC-CCceeceeEE-E----cC------CCccchHHHHHHHHHHHHH---hC---ceEEEE
Confidence 4578999999755 99999999 8999876543 2 11 2222244555555566554 12 246677
Q ss_pred EEecCc
Q psy1582 91 GITNQR 96 (129)
Q Consensus 91 gis~~~ 96 (129)
|.++..
T Consensus 391 GngTaS 396 (780)
T COG2183 391 GNGTAS 396 (780)
T ss_pred ecCCcc
Confidence 777653
No 129
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=84.24 E-value=1.1 Score=37.87 Aligned_cols=19 Identities=16% Similarity=-0.022 Sum_probs=17.1
Q ss_pred eEEEEeCCCCceeEEEEeC
Q psy1582 14 IRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~ 32 (129)
.++|||+|||++++++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~ 60 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEG 60 (663)
T ss_pred cEEEEEECcccEEEEEEeC
Confidence 5899999999999999874
No 130
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=84.23 E-value=2.8 Score=27.68 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=29.8
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 57 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 57 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
.++++++++..+.+++++++ +++++++|.+|=|+..
T Consensus 13 n~~e~I~~at~eLl~~i~~~---N~l~~~dIvSi~FT~T 48 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILER---NELSPEDIVSIIFTVT 48 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHH---TT--GGGEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeC
Confidence 46899999999999999987 8999999999999865
No 131
>PRK13322 pantothenate kinase; Reviewed
Probab=83.57 E-value=1.2 Score=32.91 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=19.9
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVV 39 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~ 39 (129)
+|.||+|.|++|.++++. +++++.
T Consensus 2 ~L~IDiGNT~iK~~l~~~-~~~~~~ 25 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN-GGQIIE 25 (246)
T ss_pred EEEEEeCCCcEEEEEEcC-CCchhh
Confidence 688999999999999995 455544
No 132
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=83.44 E-value=12 Score=25.52 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=32.3
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEE---EEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEV---VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv---~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
+||||-|.+++=.++++. ++..+ +-....++ +. .+..+=+..+.+.+.+++..
T Consensus 2 ILGIDPGl~~~G~av~~~-~~~~~~~~~~g~i~t~-----~~---~~~~~rl~~I~~~l~~~i~~ 57 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQ-EGRKLIYLASGVIRTS-----SD---APLPSRLKTIYDGLNEVIDQ 57 (154)
T ss_pred EEEEccCcCceEEEEEEe-eCCeEEEEEeeEEECC-----CC---CCHHHHHHHHHHHHHHHHHH
Confidence 799999999999999997 44332 22233322 11 12233345566677777765
No 133
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=83.28 E-value=2.9 Score=33.35 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=22.3
Q ss_pred CeEEEEeCCCCceeEEEEeCCC-CcEEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALT-QEEVVSH 41 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~-g~iv~~~ 41 (129)
+.+|.|..|++|+|+.+||..+ .+++.+.
T Consensus 4 m~iLvlN~GSSSlKf~lf~~~~~~~~l~~G 33 (404)
T TIGR00016 4 MKILVINAGSSSLKFALFDYTNGETVLLSG 33 (404)
T ss_pred CeEEEEECChHhheEEEEecCCCCceEEEE
Confidence 3489999999999999999723 3555544
No 134
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=83.19 E-value=1.5 Score=36.51 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=17.0
Q ss_pred CeEEEEeCCCCceeEEEEe
Q psy1582 13 QIRDRLSATYHTSRVLIIS 31 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d 31 (129)
..++|||+|||++.++++.
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 4689999999999999885
No 135
>PLN03184 chloroplast Hsp70; Provisional
Probab=83.08 E-value=1.5 Score=37.02 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=17.3
Q ss_pred eEEEEeCCCCceeEEEEeC
Q psy1582 14 IRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~ 32 (129)
.++|||+|||++++++++.
T Consensus 40 ~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CEEEEEeCcCcEEEEEEEC
Confidence 5899999999999999974
No 136
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=82.07 E-value=1.8 Score=32.85 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=19.6
Q ss_pred eCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582 19 SATYHTSRVLIISALTQEEVVSHSMDIS 46 (129)
Q Consensus 19 DiGtt~ik~~l~d~~~g~iv~~~~~~~~ 46 (129)
|=|||++|+.++|. +|+++.+.+.+..
T Consensus 1 DWGTSnlR~~l~~~-~g~vl~~~~~~~G 27 (287)
T PF05035_consen 1 DWGTSNLRAWLMDE-DGQVLAERSSPVG 27 (287)
T ss_dssp EE-SS-EEEEEE-C-TTEEEEEEEES--
T ss_pred CCchhhhhhheecC-CCcEEeeecCCcC
Confidence 67999999999998 8999998876554
No 137
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=81.89 E-value=2.8 Score=27.57 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=31.8
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 57 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 57 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
.++++++++..+.+++++++ +++.+++|.+|-|+..
T Consensus 13 nt~e~I~~at~eLl~~i~~~---N~l~~edivSv~FT~T 48 (117)
T cd02185 13 NTAEEILEATRELLEEIIER---NNIKPEDIISVIFTVT 48 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeC
Confidence 46789999999999999987 8999999999999875
No 138
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=81.40 E-value=3 Score=27.45 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=32.2
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCc
Q psy1582 57 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 96 (129)
Q Consensus 57 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~ 96 (129)
.+.++++++..+.+.+++++ +++++++|.+|-|+..-
T Consensus 13 nt~e~I~~at~eLl~~ii~~---N~l~~edivSv~FT~T~ 49 (117)
T TIGR01796 13 NEAEEIGEAVAELLTELMER---NELTPEDLISVIFTVTE 49 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEecC
Confidence 46788999999999999987 89999999999998753
No 139
>PRK11678 putative chaperone; Provisional
Probab=81.36 E-value=1.7 Score=34.97 Aligned_cols=18 Identities=6% Similarity=-0.068 Sum_probs=16.3
Q ss_pred EEEEeCCCCceeEEEEeC
Q psy1582 15 RDRLSATYHTSRVLIISA 32 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~ 32 (129)
++|||+|||++-+++++.
T Consensus 2 ~iGID~GTtNs~va~~~~ 19 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRD 19 (450)
T ss_pred eEEEecCccceeeEEeeC
Confidence 589999999999999974
No 140
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=81.00 E-value=5.5 Score=32.39 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=13.7
Q ss_pred CeEEEEeCCCCceeEEE
Q psy1582 13 QIRDRLSATYHTSRVLI 29 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l 29 (129)
-.-+|||||||.++.++
T Consensus 6 i~SVGIDIGTsTTqlvf 22 (475)
T PRK10719 6 LLSVGIDIGTTTTQVIF 22 (475)
T ss_pred EEEEEEeccCceEEEEE
Confidence 36789999999997644
No 141
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=81.00 E-value=8.2 Score=25.95 Aligned_cols=24 Identities=8% Similarity=-0.143 Sum_probs=20.2
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEE 37 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~i 37 (129)
+.+||||+|+-.+=.++.|. .+.+
T Consensus 4 ~~iLalD~G~kriGvAv~d~-~~~~ 27 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDP-LGGT 27 (138)
T ss_pred CcEEEEEeCCCEEEEEEecC-CCCE
Confidence 34899999999999999997 6643
No 142
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=80.80 E-value=1.5 Score=36.57 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=16.3
Q ss_pred EEEEeCCCCceeEEEEeC
Q psy1582 15 RDRLSATYHTSRVLIISA 32 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~ 32 (129)
++|||+|||++.+++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 489999999999999985
No 143
>PRK07157 acetate kinase; Provisional
Probab=80.40 E-value=3.9 Score=32.56 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=22.2
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHS 42 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~ 42 (129)
+|.|..|++|+|+.|||..+.+++.+..
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~ 32 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIASGL 32 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEEEEE
Confidence 8999999999999999963345555443
No 144
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=78.80 E-value=1.8 Score=32.98 Aligned_cols=15 Identities=7% Similarity=-0.048 Sum_probs=13.3
Q ss_pred EEEeCCCCceeEEEE
Q psy1582 16 DRLSATYHTSRVLII 30 (129)
Q Consensus 16 lgiDiGtt~ik~~l~ 30 (129)
+|||+||++++++..
T Consensus 5 ~giDlGt~~s~i~~~ 19 (333)
T TIGR00904 5 IGIDLGTANTLVYVK 19 (333)
T ss_pred eEEecCcceEEEEEC
Confidence 899999999997764
No 145
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=78.65 E-value=1.9 Score=33.11 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=19.7
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEV 38 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv 38 (129)
++|||=|||.+|+++.+. +++..
T Consensus 1 ~vGiDHGTtgi~f~~~~~-~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDG-EKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecC-CcceE
Confidence 489999999999999997 77544
No 146
>PRK13328 pantothenate kinase; Reviewed
Probab=78.23 E-value=2.8 Score=31.17 Aligned_cols=28 Identities=14% Similarity=-0.091 Sum_probs=22.0
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSM 43 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~ 43 (129)
+|-||+|.|.+|.++++. .++++.....
T Consensus 3 ~LliDiGNTriKwa~~~~-~~~~~~~~~~ 30 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADA-GRPWVHSGAF 30 (255)
T ss_pred EEEEEeCccceeEEEEcC-CCceeecchh
Confidence 688999999999999996 5566654433
No 147
>PRK12397 propionate kinase; Reviewed
Probab=78.09 E-value=5.1 Score=31.94 Aligned_cols=29 Identities=3% Similarity=-0.039 Sum_probs=22.6
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHS 42 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~ 42 (129)
.+|.|..|++|+|+.||+..+.+++.+..
T Consensus 4 ~iLvlN~GSSSlKf~lf~~~~~~~l~~G~ 32 (404)
T PRK12397 4 KIMAINAGSSSLKFQLLEMPQGDMLCQGL 32 (404)
T ss_pred cEEEEECChHhheEEEEECCCCceEEEEE
Confidence 38999999999999999963445565543
No 148
>KOG2708|consensus
Probab=77.64 E-value=15 Score=27.51 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=50.8
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECH-HHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDP-MEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig 91 (129)
...+|+.-...++-+.++. +|++++..+..| ...|..|+...+. .---.++...+++.+++ ++++.++|.-|+
T Consensus 2 ~ialG~EGSANKlGvGiv~--~~~iLaN~R~TY-itPPG~GFlP~~TA~HHr~~il~Lv~~al~e---a~v~~~diD~ic 75 (336)
T KOG2708|consen 2 MIALGLEGSANKLGVGIVR--DGKILANPRHTY-ITPPGEGFLPRDTARHHRAWILGLVKQALEE---AGVTSDDIDCIC 75 (336)
T ss_pred ceEEecccccccceeeEEe--cceeecCccccc-cCCCCCCCCcchhHHHHHHHHHHHHHHHHHH---cCCChhhCCEEE
Confidence 3567888777888888887 489998766655 2334556654442 22233455666677666 799999999888
Q ss_pred Eec
Q psy1582 92 ITN 94 (129)
Q Consensus 92 is~ 94 (129)
.+-
T Consensus 76 yTK 78 (336)
T KOG2708|consen 76 YTK 78 (336)
T ss_pred EcC
Confidence 763
No 149
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=77.50 E-value=2.3 Score=36.77 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=19.6
Q ss_pred CeEEEEeCCCCceeEEEEeCCCC
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQ 35 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g 35 (129)
.|+||+|||++|+=-+|+|. +.
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~-d~ 22 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVED-DY 22 (805)
T ss_pred CceeEEeecccceeEEEEec-cc
Confidence 47899999999999999997 44
No 150
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=77.24 E-value=11 Score=28.18 Aligned_cols=43 Identities=2% Similarity=-0.108 Sum_probs=30.9
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHH
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAV 66 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i 66 (129)
.=++.||+|.+++-++++. +++|.+.-.+.+. .-+++.++.-+
T Consensus 167 ~~~~~vniGN~HTlaa~v~--~~rI~GvfEHHT~---------~l~~~kL~~~l 209 (254)
T PF08735_consen 167 EGIIVVNIGNGHTLAALVK--DGRIYGVFEHHTG---------MLTPEKLEEYL 209 (254)
T ss_pred CCeEEEEeCCccEEEEEEe--CCEEEEEEecccC---------CCCHHHHHHHH
Confidence 3468999999999999996 6888886555443 24676655443
No 151
>PRK12379 propionate/acetate kinase; Provisional
Probab=75.76 E-value=7.6 Score=30.90 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEEEE
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVSHS 42 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~ 42 (129)
..++|.|..|++++|+.|||..+.+++.+..
T Consensus 4 ~~~iLvlN~GSSSlK~~l~~~~~~~~l~~G~ 34 (396)
T PRK12379 4 FPVVLVINCGSSSIKFSVLDASDCEVLMSGI 34 (396)
T ss_pred CCEEEEEECChHhheEEEEECCCCceEEEEE
Confidence 4689999999999999999963345555544
No 152
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.35 E-value=13 Score=28.37 Aligned_cols=44 Identities=5% Similarity=-0.047 Sum_probs=30.6
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHH
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQT 68 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 68 (129)
=.|.||+|+.++-++++|. ++|.+.-.+.+. .-+|+++-+.|..
T Consensus 228 palvVd~GngHttaalvde--dRI~gv~EHHT~---------~Lspekled~I~r 271 (342)
T COG4012 228 PALVVDYGNGHTTAALVDE--DRIVGVYEHHTI---------RLSPEKLEDQIIR 271 (342)
T ss_pred ceEEEEccCCceEEEEecC--CeEEEEeecccc---------cCCHHHHHHHHHH
Confidence 3688999999999999996 488875544332 2467665554443
No 153
>KOG1386|consensus
Probab=75.29 E-value=14 Score=30.26 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=43.3
Q ss_pred CCeEEEEeCCCCceeEEEEe--CCCCc-EEEEEEeeeccccCCCCe--EEECHHHHHHHHHHHHHHHHHH
Q psy1582 12 TQIRDRLSATYHTSRVLIIS--ALTQE-EVVSHSMDISTISPQEGW--AEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d--~~~g~-iv~~~~~~~~~~~~~~g~--~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
-+|=|.||.|++.+|.-|+. .++|. +.......+.-....||. ...+|+.+-..+..+++.+-+.
T Consensus 8 ~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~ 77 (501)
T KOG1386|consen 8 LKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEH 77 (501)
T ss_pred ceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhh
Confidence 46889999999999999987 22555 344333333333445664 3467888888888877766544
No 154
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=74.59 E-value=2.9 Score=31.94 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=13.4
Q ss_pred EEEeCCCCceeEEEE
Q psy1582 16 DRLSATYHTSRVLII 30 (129)
Q Consensus 16 lgiDiGtt~ik~~l~ 30 (129)
+|||+||++++++..
T Consensus 6 ~gIDlGt~~~~i~~~ 20 (336)
T PRK13928 6 IGIDLGTANVLVYVK 20 (336)
T ss_pred eEEEcccccEEEEEC
Confidence 899999999998765
No 155
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=74.29 E-value=13 Score=30.29 Aligned_cols=31 Identities=6% Similarity=0.033 Sum_probs=26.1
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeecc
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDIST 47 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~ 47 (129)
.+.+|||+.|+-.++++ +++++...+.|...
T Consensus 134 ~lviDIGGGStEl~~~~--~~~~~~~~Sl~lG~ 164 (496)
T PRK11031 134 RLVVDIGGASTELVTGT--GAQATSLFSLSMGC 164 (496)
T ss_pred EEEEEecCCeeeEEEec--CCceeeeeEEeccc
Confidence 68899999999999998 47888877887753
No 156
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=73.67 E-value=4.3 Score=31.30 Aligned_cols=26 Identities=12% Similarity=-0.046 Sum_probs=20.9
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
+-+|.+|+|+|++.++++. +|+....
T Consensus 128 ~~~I~~DmGGTTtDi~~i~--~G~p~~~ 153 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII--DGEVAAK 153 (318)
T ss_pred CCEEEEEcCccceeeEEec--CCEeeee
Confidence 3479999999999999987 4766654
No 157
>PHA02533 17 large terminase protein; Provisional
Probab=73.25 E-value=39 Score=28.00 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=40.7
Q ss_pred CCCeEEEEeCCC----CceeEEEEeCCC---CcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy1582 11 PTQIRDRLSATY----HTSRVLIISALT---QEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83 (129)
Q Consensus 11 ~~~~~lgiDiGt----t~ik~~l~d~~~---g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (129)
..+|++|+|.++ -+.-++|+|. . +++|+..+.. ..++... .+.++++...
T Consensus 313 ~~~y~ig~D~a~G~~~D~s~~~V~~~-~~~~~r~v~~~~~~-----------~~~~~~~----a~~I~~l~~~------- 369 (534)
T PHA02533 313 GHKYIATLDVSEGRGQDYSALHIIDI-TEYPYKQVAVYHNN-----------TISPLIL----PDIIVDYLME------- 369 (534)
T ss_pred CceEEEEEECCCCCCCceeEEEEEcc-CCCCcEEEEEEecC-----------CCCHHHH----HHHHHHHHHH-------
Confidence 468999999984 3567788887 6 7777655432 1344333 3344555554
Q ss_pred CCCeeEEEEecCcceE
Q psy1582 84 RDDIVTLGITNQRETT 99 (129)
Q Consensus 84 ~~~I~~Igis~~~~g~ 99 (129)
..+.-|+|...+.|.
T Consensus 370 -Yn~a~i~id~tg~G~ 384 (534)
T PHA02533 370 -YNEAPVYIELNSTGV 384 (534)
T ss_pred -hCceEEEEecCCCcH
Confidence 456667777766554
No 158
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=72.25 E-value=12 Score=28.18 Aligned_cols=30 Identities=7% Similarity=-0.044 Sum_probs=25.0
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeecc
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDIST 47 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~ 47 (129)
+.+|+|+.|+..++++. ++++...+.|+..
T Consensus 128 ~v~DiGGGSte~~~~~~--~~~~~~~Sl~lG~ 157 (300)
T TIGR03706 128 LVVDIGGGSTELILGKD--FEPGEGVSLPLGC 157 (300)
T ss_pred EEEEecCCeEEEEEecC--CCEeEEEEEccce
Confidence 88999999999999984 6788777777753
No 159
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=71.61 E-value=13 Score=25.32 Aligned_cols=24 Identities=13% Similarity=0.056 Sum_probs=20.7
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEV 38 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv 38 (129)
.+++||+|.-+.-.++++. ++..+
T Consensus 2 ii~sIDiGikNlA~~iie~-~~~~i 25 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEF-EGNKI 25 (143)
T ss_pred eEEEEecCCCceeEEEEEc-CCCeE
Confidence 6899999999999999998 56544
No 160
>PF12864 DUF3822: Protein of unknown function (DUF3822); InterPro: IPR024213 This is a family of uncharacterised bacterial proteins. However, structural-similarity searches indicate the family takes on an actin-like ATPase fold.; PDB: 3HRG_A.
Probab=68.75 E-value=31 Score=25.37 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=41.3
Q ss_pred CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582 11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I 90 (129)
...+.|.|-+|..+...++.|....+++......+.. ..++..+++.+.+.+++- .- ...+.++|. |
T Consensus 16 ~~~~~LsI~i~~~glsf~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~-~~---L~~~~~~v~-v 82 (253)
T PF12864_consen 16 SEQYKLSIRISLDGLSFCIYDPESKEILALESYSFDT--------ELTPISLLANLKEAFKEH-EL---LQQPYKEVR-V 82 (253)
T ss_dssp GGGSEEEEEE-TT-EEEEEEETTTTEEEEEEEE--------------TTS-HHHHHHHHHHH--GG---GGS--SEEE-E
T ss_pred ccCceEEEEEcCCcEEEEEEcCCCCcEEEEEEEEecc--------cCChhHHHHHHHHHHhhh-HH---hhCCCcEEE-E
Confidence 3568899999999999999998344444544444421 125666666666666532 11 112334455 6
Q ss_pred EEecCcceEEEEe
Q psy1582 91 GITNQRETTVVWD 103 (129)
Q Consensus 91 gis~~~~g~v~~d 103 (129)
.+.++..++||..
T Consensus 83 ~~~~~~~tlVP~~ 95 (253)
T PF12864_consen 83 LHDSPLFTLVPNE 95 (253)
T ss_dssp EE--S-EEEEEGG
T ss_pred EEcCCceEEeChH
Confidence 6777666777643
No 161
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=67.92 E-value=11 Score=31.47 Aligned_cols=27 Identities=4% Similarity=-0.210 Sum_probs=21.0
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSH 41 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~ 41 (129)
..+|-||+|.|.+|.++++. ++++...
T Consensus 338 ~~~LliD~GNTriKwa~~~~--~~~~~~~ 364 (592)
T PRK13325 338 ERFLLLDGGNSRLKWAWVEN--GTFATVG 364 (592)
T ss_pred ceEEEEEcCcCceeEEEEcC--Cceeeec
Confidence 45678999999999999995 4555443
No 162
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=67.30 E-value=12 Score=28.72 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=32.4
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHH
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQ 67 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 67 (129)
+|||-||-++-+.-||.+.|+++.....+... ++.+|.-+.+.+.
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rde-------Vtk~p~iiv~ii~ 45 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRDE-------VTKSPRIIVDIIE 45 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHHH-------hccCchHHHHHHH
Confidence 58999998888888886689999877776542 4567765554433
No 163
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=67.00 E-value=22 Score=23.59 Aligned_cols=20 Identities=15% Similarity=-0.227 Sum_probs=17.4
Q ss_pred EEEeCCCCceeEEEEeCCCCc
Q psy1582 16 DRLSATYHTSRVLIISALTQE 36 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~ 36 (129)
||||+|+..+=.++.|. .+.
T Consensus 1 laiD~G~kriGvA~~d~-~~~ 20 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI-TGW 20 (130)
T ss_pred CeEccCCCeEEEEEECC-CCC
Confidence 68999999999999997 664
No 164
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=66.96 E-value=6.8 Score=29.58 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=17.1
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEV 38 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv 38 (129)
-.|.+|+|+|++..+++. +|+..
T Consensus 78 ~~i~vDmGGTTtDi~~i~--~G~p~ 100 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK--DGRPE 100 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE--TTEE-
T ss_pred CEEEEeCCCCEEEEEEEE--CCeee
Confidence 479999999999999997 57664
No 165
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=66.95 E-value=6.3 Score=30.20 Aligned_cols=13 Identities=8% Similarity=-0.156 Sum_probs=11.4
Q ss_pred EEEEeCCCCceeE
Q psy1582 15 RDRLSATYHTSRV 27 (129)
Q Consensus 15 ~lgiDiGtt~ik~ 27 (129)
.+|||+||++++.
T Consensus 6 ~~giDlGt~~~~i 18 (335)
T PRK13929 6 EIGIDLGTANILV 18 (335)
T ss_pred eEEEEcccccEEE
Confidence 4899999999974
No 166
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=66.83 E-value=4.8 Score=30.55 Aligned_cols=16 Identities=6% Similarity=-0.037 Sum_probs=14.1
Q ss_pred EEEeCCCCceeEEEEe
Q psy1582 16 DRLSATYHTSRVLIIS 31 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d 31 (129)
+|||+||+++|++..+
T Consensus 11 vgiDlGt~~t~i~~~~ 26 (335)
T PRK13930 11 IGIDLGTANTLVYVKG 26 (335)
T ss_pred eEEEcCCCcEEEEECC
Confidence 8999999999988753
No 167
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=66.73 E-value=3.5 Score=31.85 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=11.1
Q ss_pred EEEEeCCCCceeEE
Q psy1582 15 RDRLSATYHTSRVL 28 (129)
Q Consensus 15 ~lgiDiGtt~ik~~ 28 (129)
-+|||+||++++..
T Consensus 3 ~igIDLGT~~t~i~ 16 (326)
T PF06723_consen 3 DIGIDLGTSNTRIY 16 (326)
T ss_dssp EEEEEE-SSEEEEE
T ss_pred ceEEecCcccEEEE
Confidence 48999999999864
No 168
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=65.31 E-value=11 Score=28.00 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=26.0
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeecc
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDIST 47 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~ 47 (129)
.-.+.+||||.|+..++++ ++++....+.|+..
T Consensus 112 ~~~lviDIGGGStEl~~~~--~~~~~~~~Sl~lG~ 144 (285)
T PF02541_consen 112 KNGLVIDIGGGSTELILFE--NGKVVFSQSLPLGA 144 (285)
T ss_dssp SSEEEEEEESSEEEEEEEE--TTEEEEEEEES--H
T ss_pred CCEEEEEECCCceEEEEEE--CCeeeEeeeeehHH
Confidence 3467799999999999999 47888888888753
No 169
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=64.96 E-value=6.2 Score=31.30 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=22.6
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSH 41 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~ 41 (129)
.+|.|..|++|+|+.+||..+++++.+.
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~~G 29 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLASG 29 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchhhh
Confidence 5789999999999999997456666543
No 170
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=63.39 E-value=6.4 Score=29.90 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=12.7
Q ss_pred EEEEeCCCCceeEEE
Q psy1582 15 RDRLSATYHTSRVLI 29 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l 29 (129)
.+|||+||+++|+..
T Consensus 7 ~igIDlGt~~~~i~~ 21 (334)
T PRK13927 7 DLGIDLGTANTLVYV 21 (334)
T ss_pred eeEEEcCcceEEEEE
Confidence 489999999999743
No 171
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=63.31 E-value=15 Score=29.41 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=21.6
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHS 42 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~ 42 (129)
+|.+..|+|++|+.||+....+.+.+..
T Consensus 3 iLvlN~GSSSlKf~lf~~~~~~~l~~G~ 30 (402)
T PRK00180 3 ILVLNAGSSSLKFQLIDMPNEEVLASGL 30 (402)
T ss_pred EEEEECChHhheEEEEECCCCcEEEEEE
Confidence 7999999999999999962335555443
No 172
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=62.85 E-value=15 Score=30.03 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=25.6
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEee
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMD 44 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~ 44 (129)
...++=||||+-.+..++|+ +|++++..-..
T Consensus 142 ~~~V~NiDIGGGTtN~avf~--~G~v~~T~cl~ 172 (473)
T PF06277_consen 142 HTVVANIDIGGGTTNIAVFD--NGEVIDTACLD 172 (473)
T ss_pred CCeEEEEEeCCCceeEEEEE--CCEEEEEEEEe
Confidence 45789999999999999999 58888866443
No 173
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=61.88 E-value=13 Score=29.21 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=45.1
Q ss_pred CeEEEEeCCCC--ceeEEEEeCCCCc-----EEEEEEeeeccccC------CCCeEEECHHH-------HHHHHHHHHHH
Q psy1582 13 QIRDRLSATYH--TSRVLIISALTQE-----EVVSHSMDISTISP------QEGWAEQDPME-------ILQAVQTTMDR 72 (129)
Q Consensus 13 ~~~lgiDiGtt--~ik~~l~d~~~g~-----iv~~~~~~~~~~~~------~~g~~~~~~~~-------~~~~i~~~~~~ 72 (129)
.++||+=-||+ .+=+++++. +|+ ++...+.||+.... ... ...++++ +-+.+.+++++
T Consensus 2 ~~~iGlMSGTSlDGiD~alv~~-~g~~~~~~~~~~~~~py~~~lr~~l~~~~~~-~~~~~~~l~~l~~~lg~~~a~av~~ 79 (365)
T PRK09585 2 MRYIGLMSGTSLDGVDAALVEI-DGEGTKVELLASATVPYPDELRAALLALLQG-GADELERLAELDTALGRLFAEAVNA 79 (365)
T ss_pred CeEEEeccccChhhhhEEEEEE-eCCCcceEEeeeeEeeCCHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888887 577778876 442 44445666652100 000 0011222 23345556666
Q ss_pred HHHHHHhCCCCCCCeeEEEEecC
Q psy1582 73 AIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 73 ~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
++++ +++++.+|..||.-+|
T Consensus 80 ~~~~---~~l~~~~id~IgsHGQ 99 (365)
T PRK09585 80 LLAE---AGLSPEDIDAIGSHGQ 99 (365)
T ss_pred HHHH---cCCCccCccEEEeCCc
Confidence 6666 7888899998887765
No 174
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=61.28 E-value=13 Score=25.28 Aligned_cols=22 Identities=9% Similarity=-0.153 Sum_probs=19.4
Q ss_pred CeEEEEeCCCCceeEEEEeCCCC
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQ 35 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g 35 (129)
+.+||+|+|+-+|=+++-|. .+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~-~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDI-LG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecC-CC
Confidence 46899999999999999997 55
No 175
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.76 E-value=8.6 Score=32.73 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=16.3
Q ss_pred EEEEeCCCCceeEEEEe
Q psy1582 15 RDRLSATYHTSRVLIIS 31 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d 31 (129)
+|++|+|+|++.++++.
T Consensus 280 ~i~~DmGGTStDva~i~ 296 (674)
T COG0145 280 AIVFDMGGTSTDVALII 296 (674)
T ss_pred EEEEEcCCcceeeeeee
Confidence 89999999999999988
No 176
>PRK10854 exopolyphosphatase; Provisional
Probab=60.33 E-value=53 Score=26.90 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=24.3
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDIS 46 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~ 46 (129)
.+.||||+.|+-.++++. +++....+.+..
T Consensus 139 ~lvvDIGGGStEl~~~~~--~~~~~~~S~~lG 168 (513)
T PRK10854 139 KLVIDIGGGSTELVIGEN--FEPILVESRRMG 168 (513)
T ss_pred eEEEEeCCCeEEEEEecC--CCeeEeEEEecc
Confidence 688999999999999984 677766666664
No 177
>PRK13329 pantothenate kinase; Reviewed
Probab=59.95 E-value=7.6 Score=28.77 Aligned_cols=17 Identities=0% Similarity=-0.216 Sum_probs=16.0
Q ss_pred EEEEeCCCCceeEEEEe
Q psy1582 15 RDRLSATYHTSRVLIIS 31 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d 31 (129)
.|-||+|.|.+|.++++
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 67799999999999999
No 178
>KOG0100|consensus
Probab=58.97 E-value=14 Score=29.89 Aligned_cols=20 Identities=10% Similarity=-0.185 Sum_probs=17.7
Q ss_pred CCeEEEEeCCCCceeEEEEe
Q psy1582 12 TQIRDRLSATYHTSRVLIIS 31 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d 31 (129)
..-+||||+|||..=++++-
T Consensus 35 ~gtvigIdLGTTYsCVgV~k 54 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYK 54 (663)
T ss_pred cceEEEEecCCceeeEEEEe
Confidence 46799999999999888887
No 179
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=58.31 E-value=32 Score=22.57 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=29.5
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 57 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 57 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
..++++.++.++.++++..+ +..+++++..+-++..
T Consensus 15 nt~eeI~~at~eLl~~i~~~---N~~~pedv~sv~~svT 50 (125)
T COG4401 15 NTEEEILDATKELLEEIEEE---NITDPEDVVSVILSVT 50 (125)
T ss_pred CCHHHHHHHHHHHHHHHHHh---cCCChhheeeEEEEec
Confidence 35788999999999888876 6778899998888864
No 180
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=57.84 E-value=18 Score=29.57 Aligned_cols=33 Identities=3% Similarity=0.030 Sum_probs=27.8
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDIS 46 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~ 46 (129)
..-++-||||+..+..++|. +|+++.....++.
T Consensus 145 e~gVa~IDIGgGTT~iaVf~--~G~l~~T~~l~vG 177 (475)
T PRK10719 145 NTRVLNIDIGGGTANYALFD--AGKVIDTACLNVG 177 (475)
T ss_pred cCceEEEEeCCCceEEEEEE--CCEEEEEEEEecc
Confidence 44578899999999999999 5899988877664
No 181
>KOG1385|consensus
Probab=56.71 E-value=20 Score=28.91 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=36.2
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcE----EEEEEeeeccccCCCCe--EEECHHHHHHHHHHHHHHHHH
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEE----VVSHSMDISTISPQEGW--AEQDPMEILQAVQTTMDRAIE 75 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~i----v~~~~~~~~~~~~~~g~--~~~~~~~~~~~i~~~~~~~~~ 75 (129)
..|.+-||.|+|.+|+.++-- +... ......-+ ..-+||- ...||++..+.+...++.+.+
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F-~~~~~~~~p~le~E~F--~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~ 132 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKF-DQCLPGMPPELEHELF--KEVKPGLSSFADDPEEAANSLRPLLDVAEA 132 (453)
T ss_pred eEEEEEEecCCCcceEEEEEe-ccCCCCCCchhHHHHH--hhcCCcccccCCChHHHHHhHHHHHHHHHh
Confidence 579999999999999999886 3321 11011111 1123332 345777777777666665544
No 182
>PRK13690 hypothetical protein; Provisional
Probab=55.27 E-value=35 Score=24.19 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 59 PMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
.+++-+.+.+.+.++++. +.+.+.+|.-||+|+.
T Consensus 3 ~~~i~~~~~~~~~El~~~---a~l~~g~i~VvGcSTS 36 (184)
T PRK13690 3 LEEIKKQTRQILEELLEQ---ANLKPGQIFVLGCSTS 36 (184)
T ss_pred HHHHHHHHHHHHHHHHHh---hCCCCCCEEEEecchH
Confidence 456777788888888877 7888899999999975
No 183
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=54.82 E-value=14 Score=28.19 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=20.9
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVV 39 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~ 39 (129)
.--.||||++-.|++.+|. +|++..
T Consensus 126 v~tIIDIGGQDsK~I~~d~-~G~v~d 150 (293)
T TIGR03192 126 VRTILDMGGQDCKAIHCDE-KGKVTN 150 (293)
T ss_pred CCEEEEeCCCceEEEEEcC-CCcEee
Confidence 3457999999999999998 897664
No 184
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=53.41 E-value=73 Score=22.02 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=32.6
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
+||||=|+..+=.++++. ++..+.- ..+....++. .+..+=+..|.+.+.+++.+
T Consensus 1 ILGIDPGl~~tG~gvi~~-~~~~~~~--v~~G~I~t~~----~~~~~RL~~I~~~l~~~i~~ 55 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQ-VGRQLSY--LGSGCIRTKV----DDLPSRLKLIYAGVTEIITQ 55 (156)
T ss_pred CEeECcccccccEEEEEe-cCCeEEE--EEeeEEECCC----CCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999997 5554321 1122111111 13333344666677777765
No 185
>PLN02920 pantothenate kinase 1
Probab=52.85 E-value=61 Score=25.95 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=16.9
Q ss_pred eEEEEeCCCCceeEEEEeC
Q psy1582 14 IRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~ 32 (129)
..++||||+|-+|.+-+..
T Consensus 19 ~~~a~Diggsl~Klvy~~~ 37 (398)
T PLN02920 19 SHLALDIGGSLIKLVYFSR 37 (398)
T ss_pred eEEEEEcCCceEEEEEEec
Confidence 5799999999999888874
No 186
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.79 E-value=98 Score=24.07 Aligned_cols=83 Identities=17% Similarity=0.112 Sum_probs=48.1
Q ss_pred CCCCceeEEEEeCCCCcEEEEEEeeeccc-cCC------CCe---EEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582 20 ATYHTSRVLIISALTQEEVVSHSMDISTI-SPQ------EGW---AEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT 89 (129)
Q Consensus 20 iGtt~ik~~l~d~~~g~iv~~~~~~~~~~-~~~------~g~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~ 89 (129)
.---++|-.-.+. +|.++.-.++.-+.. .|. .|. .-+-|++.|.++..-+-.+... .+-.-
T Consensus 223 l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n--------~~~gl 293 (366)
T COG3490 223 LRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN--------RRDGL 293 (366)
T ss_pred hhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec--------ccCCe
Confidence 3345677777777 788887665544321 111 111 1233566666776655444322 22345
Q ss_pred EEEecC-cceEEEEeCCCCcccc
Q psy1582 90 LGITNQ-RETTVVWDLNTGEPLY 111 (129)
Q Consensus 90 Igis~~-~~g~v~~d~~~g~~~~ 111 (129)
|+++++ +..++.||.++|.++.
T Consensus 294 V~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 294 VALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred EEEecCCCCeEEEEEcCCCcEEe
Confidence 677777 6668889999998764
No 187
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=52.25 E-value=17 Score=27.27 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=20.8
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVV 39 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~ 39 (129)
.--.||||++-+|+..+|. +|.+..
T Consensus 98 ~~tIiDIGGQD~K~I~~~~-~G~v~~ 122 (262)
T TIGR02261 98 ARAVLDIGALHGRAIRMDE-RGKVEA 122 (262)
T ss_pred CCEEEEeCCCceEEEEEcC-CCcEee
Confidence 3457999999999999998 888764
No 188
>KOG0101|consensus
Probab=51.89 E-value=21 Score=30.15 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=21.4
Q ss_pred CCCeEEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582 11 PTQIRDRLSATYHTSRVLIISALTQEEVV 39 (129)
Q Consensus 11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~ 39 (129)
.+...+|||+|||+..++++.....+++.
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iia 33 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIA 33 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeee
Confidence 45578999999999999999641334443
No 189
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=51.13 E-value=14 Score=28.79 Aligned_cols=18 Identities=6% Similarity=-0.009 Sum_probs=15.2
Q ss_pred EEEEeCCCCceeEEEEeC
Q psy1582 15 RDRLSATYHTSRVLIISA 32 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~ 32 (129)
.+|+|||+|-+|.+-+..
T Consensus 2 ~faiDIGGTL~KlVYfs~ 19 (341)
T PF03630_consen 2 HFAIDIGGTLVKLVYFSP 19 (341)
T ss_dssp EEEEEE-SSEEEEEEEEE
T ss_pred eEEEEcCCceEEEEEEee
Confidence 479999999999999886
No 190
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=49.94 E-value=18 Score=31.73 Aligned_cols=23 Identities=4% Similarity=-0.064 Sum_probs=19.3
Q ss_pred CCCCeEEEEeCCCCceeEEEEeC
Q psy1582 10 APTQIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 10 ~~~~~~lgiDiGtt~ik~~l~d~ 32 (129)
|.+.|+||+|||+.|+==+++..
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~ 23 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVED 23 (1088)
T ss_pred CCcceEEEeeccccceeeEEeec
Confidence 35689999999999998777765
No 191
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=48.40 E-value=16 Score=28.97 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=19.0
Q ss_pred CCeEEEEeCCCCceeEEEEeC
Q psy1582 12 TQIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~ 32 (129)
..|.+.||.|+|.+|+-||.-
T Consensus 7 ~~y~vviDAGSsgsR~~vy~~ 27 (434)
T PF01150_consen 7 RKYGVVIDAGSSGSRVHVYKW 27 (434)
T ss_dssp EEEEEEEEEESSEEEEEEEEE
T ss_pred ccEEEEEEcCCCCceEEEEEE
Confidence 468999999999999999985
No 192
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=48.32 E-value=57 Score=21.01 Aligned_cols=24 Identities=4% Similarity=0.015 Sum_probs=19.3
Q ss_pred CCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 21 TYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 21 Gtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
..|++|+-|||. +|+++..+..-+
T Consensus 15 ~Pt~~RARlyd~-dG~Ll~DSr~l~ 38 (112)
T PF13756_consen 15 SPTRTRARLYDP-DGNLLADSRVLY 38 (112)
T ss_pred CCCCceEEEECC-CCCEEeeccccc
Confidence 457999999999 999998665444
No 193
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.03 E-value=52 Score=27.84 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSM 43 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~ 43 (129)
.+++|||=|+|.-- +++|. +|+++...+.
T Consensus 244 ~lIVGIDPGiTtgi-Avldl-dGevl~~~S~ 272 (652)
T COG2433 244 SLIVGIDPGITTGI-AVLDL-DGEVLDLESR 272 (652)
T ss_pred ceEEEeCCCceeeE-EEEec-CCcEEeeecc
Confidence 48999999998766 57898 9999986654
No 194
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=46.00 E-value=13 Score=29.35 Aligned_cols=81 Identities=14% Similarity=0.054 Sum_probs=46.9
Q ss_pred CCCCeEEEEeCCCC--ceeEEEEeCCCCc-EEE---EEEeeeccccC------CCCeEEECH-------HHHHHHHHHHH
Q psy1582 10 APTQIRDRLSATYH--TSRVLIISALTQE-EVV---SHSMDISTISP------QEGWAEQDP-------MEILQAVQTTM 70 (129)
Q Consensus 10 ~~~~~~lgiDiGtt--~ik~~l~d~~~g~-iv~---~~~~~~~~~~~------~~g~~~~~~-------~~~~~~i~~~~ 70 (129)
++..++||+=-||+ .+.+++++. +|+ ++. ...++|+...- ..+.. ..+ +++-....+++
T Consensus 2 ~~~~~~iG~msgTslDgiD~alv~~-~ge~~~~~~~~~~~p~p~~lr~~~~~l~~~~a-~~~~~~~~l~~~l~~~~a~av 79 (371)
T COG2377 2 MEPARYIGLMSGTSLDGIDAALVRI-DGERRVELGASLTRPYPPRLRQRLLALCAARA-DTLAELAELDRALALLHAQAV 79 (371)
T ss_pred CCcceEEEecCCCCCcchhhhhhhc-ccchhhhcccCCcccCCHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 45678899988887 678888887 652 222 22344432100 00100 011 22333455666
Q ss_pred HHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 71 DRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 71 ~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
+.++++ .++.+.+|.+||+=+|
T Consensus 80 ~~ll~~---~~l~~~~i~~iG~HGQ 101 (371)
T COG2377 80 AALLAE---QGLLPRDIRAIGCHGQ 101 (371)
T ss_pred HHHHHH---cCCCHHhCceeecCCc
Confidence 666665 6899999998887665
No 195
>KOG0104|consensus
Probab=45.95 E-value=15 Score=31.81 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=18.1
Q ss_pred CeEEEEeCCCCceeEEEEeC
Q psy1582 13 QIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~ 32 (129)
--+++||+|+..+|++|+..
T Consensus 22 ~AvmsVDlGse~~Kv~vVkP 41 (902)
T KOG0104|consen 22 LAVMSVDLGSEWIKVAVVKP 41 (902)
T ss_pred hhheeeecccceeEEEEecC
Confidence 35789999999999999997
No 196
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=44.44 E-value=41 Score=24.99 Aligned_cols=29 Identities=14% Similarity=0.023 Sum_probs=22.7
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
.+-||||+.++.+.++. +|+++.....++
T Consensus 137 ~~vvDIGggtt~i~v~~--~g~~~~~~~~~~ 165 (267)
T PRK15080 137 GAVVDIGGGTTGISILK--DGKVVYSADEPT 165 (267)
T ss_pred cEEEEeCCCcEEEEEEE--CCeEEEEecccC
Confidence 46799999999999987 577777655444
No 197
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=44.37 E-value=1e+02 Score=21.23 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=20.4
Q ss_pred eEEEEeCCCCc-----eeEEEEeCCCCcEEEEEE
Q psy1582 14 IRDRLSATYHT-----SRVLIISALTQEEVVSHS 42 (129)
Q Consensus 14 ~~lgiDiGtt~-----ik~~l~d~~~g~iv~~~~ 42 (129)
-+|.+|+.|++ +=-++++. ++++..+-
T Consensus 3 ~~LslD~STs~~~~~gTG~A~~~~--~~~~~~si 34 (159)
T PF07066_consen 3 KVLSLDFSTSSKKGEGTGWAFFKG--SDLVVGSI 34 (159)
T ss_pred eeEEEEEecccCCCCCceeEEecC--CeEEEeee
Confidence 47999999998 88888884 56654443
No 198
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=43.73 E-value=79 Score=26.00 Aligned_cols=32 Identities=6% Similarity=-0.104 Sum_probs=24.7
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDIS 46 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~ 46 (129)
.-.+.+||||-|+-.++.+. .++....+.|+.
T Consensus 129 ~~~lv~DIGGGStEl~~g~~--~~~~~~~Sl~~G 160 (492)
T COG0248 129 GDGLVIDIGGGSTELVLGDN--FEIGLLISLPLG 160 (492)
T ss_pred CCEEEEEecCCeEEEEEecC--CccceeEEeecc
Confidence 34688999999999999984 566666666654
No 199
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=43.31 E-value=1.4e+02 Score=23.08 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=21.3
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
.+.||||+..+.++++.. |.++.+.+.++
T Consensus 147 ~miVDIG~GtTdiavisl--ggiv~s~si~~ 175 (326)
T PF06723_consen 147 SMIVDIGGGTTDIAVISL--GGIVASRSIRI 175 (326)
T ss_dssp EEEEEE-SS-EEEEEEET--TEEEEEEEES-
T ss_pred eEEEEECCCeEEEEEEEC--CCEEEEEEEEe
Confidence 578999999999999986 66777666655
No 200
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=43.20 E-value=1.3e+02 Score=22.62 Aligned_cols=70 Identities=14% Similarity=0.032 Sum_probs=40.2
Q ss_pred CCeEEEEeCCCCceeEE-EEeCCCCcEEEEEEeeeccccCCCCeEE---ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582 12 TQIRDRLSATYHTSRVL-IISALTQEEVVSHSMDISTISPQEGWAE---QDPMEILQAVQTTMDRAIEKLSAHGLSRDDI 87 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~-l~d~~~g~iv~~~~~~~~~~~~~~g~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I 87 (129)
..+.++||+.|. +... .++. .++.+. .+ |..|..- +=| -|+.+.+.+.++... ...+
T Consensus 175 Ggi~~~ID~~tG-l~~~~~~~~-~~~~~~--~H------PdTg~~~~g~~IP--~w~~~~~l~~~~~~~-------~p~~ 235 (285)
T PF14397_consen 175 GGIGVGIDLATG-LGRFAGYDQ-DGERYE--HH------PDTGAPFSGFQIP--NWDEILELAKEAHRK-------FPGL 235 (285)
T ss_pred CCEEEEEecCCC-ccccccccC-CCCEee--eC------CCCCCccCCccCC--CHHHHHHHHHHHHHH-------CCCC
Confidence 468899999998 5544 5776 666552 22 2222110 112 367777777676554 2456
Q ss_pred eEEEEecCcceEEEEeCCCC
Q psy1582 88 VTLGITNQRETTVVWDLNTG 107 (129)
Q Consensus 88 ~~Igis~~~~g~v~~d~~~g 107 (129)
..||-.. .++.+ |
T Consensus 236 ~~iGWDv------ait~~-G 248 (285)
T PF14397_consen 236 GYIGWDV------AITED-G 248 (285)
T ss_pred CeEEEEE------EEcCC-C
Confidence 6777663 45665 6
No 201
>PLN02666 5-oxoprolinase
Probab=41.97 E-value=38 Score=31.18 Aligned_cols=18 Identities=6% Similarity=-0.212 Sum_probs=16.5
Q ss_pred eEEEEeCCCCceeEEEEe
Q psy1582 14 IRDRLSATYHTSRVLIIS 31 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d 31 (129)
-+|++|+|+|++.+++++
T Consensus 315 ~~I~~DmGGTTtDv~li~ 332 (1275)
T PLN02666 315 PVIGFDMGGTSTDVSRYD 332 (1275)
T ss_pred CEEEEecCCceeeeEEEc
Confidence 479999999999999995
No 202
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=41.22 E-value=59 Score=25.80 Aligned_cols=31 Identities=3% Similarity=-0.195 Sum_probs=24.9
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
.-++.||+|+.++-.++|. +|.++.....++
T Consensus 204 ~gv~vvDiGggtTdisv~~--~G~l~~~~~i~~ 234 (420)
T PRK09472 204 LGVCVVDIGGGTMDIAVYT--GGALRHTKVIPY 234 (420)
T ss_pred cCeEEEEeCCCceEEEEEE--CCEEEEEeeeec
Confidence 3478899999999999998 577777666655
No 203
>PF13290 CHB_HEX_C_1: Chitobiase/beta-hexosaminidase C-terminal domain
Probab=41.05 E-value=31 Score=20.13 Aligned_cols=19 Identities=5% Similarity=0.003 Sum_probs=15.7
Q ss_pred EEEeCCCCceeEEEEeCCCCc
Q psy1582 16 DRLSATYHTSRVLIISALTQE 36 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~ 36 (129)
|-|+ |++.+|+.+++. +|+
T Consensus 43 i~i~-~~ttVka~a~~~-~g~ 61 (67)
T PF13290_consen 43 ITIT-GTTTVKARAFDP-DGN 61 (67)
T ss_pred EEec-CCEEEEEEEEcC-CCc
Confidence 4566 999999999998 664
No 204
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=40.72 E-value=63 Score=20.79 Aligned_cols=28 Identities=14% Similarity=-0.101 Sum_probs=21.0
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSH 41 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~ 41 (129)
-+++=|+|++.-|-+.||..+|++.-+.
T Consensus 79 ~I~a~dvGG~~~R~v~f~~~tG~v~vk~ 106 (114)
T PF03975_consen 79 PIVAEDVGGNFGRKVRFDPATGEVWVKR 106 (114)
T ss_dssp -EEEEEE-SSS-EEEEEETTTTEEEEE-
T ss_pred cEEEeeCCCCCCcEEEEEcCCCEEEEEE
Confidence 3688999999999999997789877643
No 205
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=40.70 E-value=28 Score=26.90 Aligned_cols=18 Identities=11% Similarity=-0.260 Sum_probs=15.6
Q ss_pred CeEEEEeCCCCceeEEEE
Q psy1582 13 QIRDRLSATYHTSRVLII 30 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~ 30 (129)
.+++|||+|-.++|.+.-
T Consensus 2 ~~v~~iDiG~g~tK~~~~ 19 (344)
T PRK13917 2 VYVMALDFGNGFVKGKIN 19 (344)
T ss_pred ceEEEEeccCCeEEEEec
Confidence 478999999999999764
No 206
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=40.67 E-value=65 Score=24.64 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=23.8
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDIS 46 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~ 46 (129)
..++-||||.+++...++. +|+.+.....++.
T Consensus 180 ~~~~lvdiG~~~t~~~i~~--~g~~~f~R~i~~G 211 (340)
T PF11104_consen 180 ETVALVDIGASSTTVIIFQ--NGKPIFSRSIPIG 211 (340)
T ss_dssp -EEEEEEE-SS-EEEEEEE--TTEEEEEEEES-S
T ss_pred ceEEEEEecCCeEEEEEEE--CCEEEEEEEEeeC
Confidence 4678899999999999999 5888887777664
No 207
>COG1647 Esterase/lipase [General function prediction only]
Probab=40.58 E-value=54 Score=24.33 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=26.3
Q ss_pred eEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582 54 WAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 94 (129)
Q Consensus 54 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~ 94 (129)
+....|++||+.+.+..+.+.++ |. +.|..+|+|-
T Consensus 60 fl~t~~~DW~~~v~d~Y~~L~~~----gy--~eI~v~GlSm 94 (243)
T COG1647 60 FLKTTPRDWWEDVEDGYRDLKEA----GY--DEIAVVGLSM 94 (243)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHc----CC--CeEEEEeecc
Confidence 35678999999999999888643 43 5677777773
No 208
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=40.32 E-value=79 Score=24.05 Aligned_cols=27 Identities=7% Similarity=0.040 Sum_probs=17.6
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
..++.||||+.++=.+++.. ....+..
T Consensus 164 ~~~lVVDIGG~T~Dv~~v~~-~~~~~~~ 190 (318)
T PF06406_consen 164 ESVLVVDIGGRTTDVAVVRG-GLPDISK 190 (318)
T ss_dssp SEEEEEEE-SS-EEEEEEEG-GG--EEE
T ss_pred CcEEEEEcCCCeEEeeeecC-Cccccch
Confidence 45789999999999998885 4444443
No 209
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=39.82 E-value=1.1e+02 Score=23.16 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=13.9
Q ss_pred CeEEEEeCCCCceeEEE
Q psy1582 13 QIRDRLSATYHTSRVLI 29 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l 29 (129)
..-++||+|+|-.|++-
T Consensus 18 ~~~vaiDiGGtLaKvv~ 34 (342)
T COG5146 18 VMKVAIDIGGTLAKVVQ 34 (342)
T ss_pred eEEEEEecCceeeeeee
Confidence 45689999999999654
No 210
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=36.56 E-value=1.1e+02 Score=22.68 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=33.1
Q ss_pred CeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCcceEEEEe
Q psy1582 53 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 103 (129)
Q Consensus 53 g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~~g~v~~d 103 (129)
|....+++.+.+.+...++.+...+ ..+.....|..+.+++.|.=-+-+|
T Consensus 177 Gk~sf~~e~L~eNi~a~l~~i~~~~-p~~~kg~~ik~v~vstTMGP~v~v~ 226 (228)
T COG0081 177 GKVSFDDEKLAENIEALLNAIVKAK-PAGAKGQYIKSVYVSTTMGPGVKVD 226 (228)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhC-cCCcccceEeEEEEecCCCCCEEec
Confidence 4567889999999988887766542 1233356789999987653333344
No 211
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=36.27 E-value=40 Score=27.20 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=20.8
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEV 38 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv 38 (129)
..--.||||++-+|++-+|. +|++.
T Consensus 267 ~vrTIIDIGGQDsK~I~ld~-~G~V~ 291 (432)
T TIGR02259 267 GTRTVLDIGGQDTKGIQIDD-HGIVE 291 (432)
T ss_pred CCCEEEEeCCCceEEEEEcC-CCcEe
Confidence 34467999999999999998 89776
No 212
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=36.18 E-value=73 Score=22.95 Aligned_cols=27 Identities=11% Similarity=-0.150 Sum_probs=23.4
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
-+++=|+|++.-|-+.|+..+|+++-+
T Consensus 142 ~iva~DvGG~~gR~v~f~~~tG~v~vk 168 (201)
T PRK13487 142 PIVAEDLLDIYPRKVYFFPTTGKVLVK 168 (201)
T ss_pred cEEEEECCCCCCcEEEEECCCCEEEEE
Confidence 378899999999999999878887754
No 213
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=35.50 E-value=90 Score=21.73 Aligned_cols=27 Identities=11% Similarity=-0.054 Sum_probs=23.2
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
-+++=|+|++.-|-+.|+..+|+++-+
T Consensus 129 ~i~a~DvGG~~gR~i~f~~~tG~v~vk 155 (163)
T PRK13494 129 PILAKDFDQSKSRKIFVFPENFKVIVE 155 (163)
T ss_pred cEEEEeCCCCCCcEEEEECCCCEEEEE
Confidence 378899999999999999878887654
No 214
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=35.09 E-value=34 Score=26.30 Aligned_cols=18 Identities=6% Similarity=-0.147 Sum_probs=15.2
Q ss_pred EEEEeCCCCceeEEEEeC
Q psy1582 15 RDRLSATYHTSRVLIISA 32 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~ 32 (129)
.++||+|+.++|+..-..
T Consensus 3 ~iviD~Gs~~~k~G~~~~ 20 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGE 20 (373)
T ss_pred eEEEECCCCcEEEeeCCC
Confidence 589999999999986554
No 215
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=34.95 E-value=75 Score=21.16 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=22.9
Q ss_pred CCCCceeEEEEeCCCCcEEEEEEeeeccc
Q psy1582 20 ATYHTSRVLIISALTQEEVVSHSMDISTI 48 (129)
Q Consensus 20 iGtt~ik~~l~d~~~g~iv~~~~~~~~~~ 48 (129)
=|+-.+|+-++|. .|.++....+++-.+
T Consensus 93 dG~ytvk~eiL~s-~g~vV~t~s~~~~ID 120 (124)
T PF13752_consen 93 DGTYTVKSEILDS-QGTVVQTYSYPFTID 120 (124)
T ss_pred CCcEEEEEEeecc-CCCEEEeeeEeEEEe
Confidence 3667889999999 899999888887654
No 216
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=33.73 E-value=80 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=21.2
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQEEVVSH 41 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~ 41 (129)
...++.||||+.++=.++++ +++++...
T Consensus 166 ~~~~lVIDIG~~TtD~~~~~--~~~~~~~~ 193 (320)
T TIGR03739 166 KEQSLIIDPGYFTFDWLVAR--GMRLVQKR 193 (320)
T ss_pred cCcEEEEecCCCeeeeehcc--CCEEcccc
Confidence 44579999999999998886 56665443
No 217
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=33.39 E-value=45 Score=24.85 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCcceE
Q psy1582 60 MEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETT 99 (129)
Q Consensus 60 ~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~~g~ 99 (129)
..-.+.+...+++++++ +++++.+|.+|+++. |||.
T Consensus 27 r~H~~~L~~~i~~~l~~---~~~~~~did~iavt~-GPGs 62 (268)
T PF00814_consen 27 RQHSENLPPLIEELLKE---AGISLSDIDAIAVTR-GPGS 62 (268)
T ss_dssp HHHHHHHHHHHHHHHHH---HTS-GGGESEEEEEE-ESS-
T ss_pred HHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec-CCCc
Confidence 33455677777888877 688889999999886 5553
No 218
>COG0400 Predicted esterase [General function prediction only]
Probab=33.26 E-value=1e+02 Score=22.16 Aligned_cols=27 Identities=15% Similarity=0.417 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582 65 AVQTTMDRAIEKLSAHGLSRDDIVTLGITN 94 (129)
Q Consensus 65 ~i~~~~~~~~~~~~~~~~~~~~I~~Igis~ 94 (129)
.+.+.++.+..+ .+++.+++..+|+|-
T Consensus 82 ~~~~~l~~~~~~---~gi~~~~ii~~GfSq 108 (207)
T COG0400 82 KLAEFLEELAEE---YGIDSSRIILIGFSQ 108 (207)
T ss_pred HHHHHHHHHHHH---hCCChhheEEEecCh
Confidence 445555555554 689999999999984
No 219
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=33.15 E-value=1e+02 Score=23.41 Aligned_cols=30 Identities=3% Similarity=0.075 Sum_probs=25.6
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDIS 46 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~ 46 (129)
++-||+|..++...++. +|.++.....++.
T Consensus 190 ~~lvdiG~~~t~l~i~~--~g~~~~~r~i~~G 219 (348)
T TIGR01175 190 AALVDIGATSSTLNLLH--PGRMLFTREVPFG 219 (348)
T ss_pred EEEEEECCCcEEEEEEE--CCeEEEEEEeech
Confidence 78899999999999998 5888887777764
No 220
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=31.92 E-value=74 Score=15.87 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=14.9
Q ss_pred EEecCcceEEEEeCCCCcccc
Q psy1582 91 GITNQRETTVVWDLNTGEPLY 111 (129)
Q Consensus 91 gis~~~~g~v~~d~~~g~~~~ 111 (129)
-+++....+..+|.+||+.+.
T Consensus 4 ~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 4 YVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEETTTSEEEEEETTTTSEEE
T ss_pred EEeCCCCEEEEEECCCCCEEE
Confidence 344555567789998999874
No 221
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=31.92 E-value=2.7e+02 Score=22.37 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=42.5
Q ss_pred eEEEEeCCCCceeEEEEeC--CCCc--EEEEEE-eeeccccCCCCe---------EEECHHHHHHHHHHHHHHHHHHHHh
Q psy1582 14 IRDRLSATYHTSRVLIISA--LTQE--EVVSHS-MDISTISPQEGW---------AEQDPMEILQAVQTTMDRAIEKLSA 79 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~--~~g~--iv~~~~-~~~~~~~~~~g~---------~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (129)
++..|.+|.|.+|++|.-. ++|+ ++.+.. ..-....|.+|- .+-.-+.+-+.+.+.+.+++++
T Consensus 3 iVASVElGNTTTKcIltaTnl~tgktY~inK~V~MTRdVRpPk~gEevFG~Tl~g~eLtresV~elV~dtl~e~~k~--- 79 (445)
T TIGR03285 3 IVASVELGNTTTKCILTATNLKTGKTYLLNKCVRMTRDVRPPRSGEEVFGKTVWGVELTRESVAELVKDTLKESLKK--- 79 (445)
T ss_pred EEEEEEecCceeeEEEEeeccCCCcEEEEeeeeeeeccCCCCCCCCcccceeecCccccHHHHHHHHHHHHHHHHHH---
Confidence 5778999999999998764 2332 122111 111122344431 2233344555555555555554
Q ss_pred CCCCCCCeeEEEEec
Q psy1582 80 HGLSRDDIVTLGITN 94 (129)
Q Consensus 80 ~~~~~~~I~~Igis~ 94 (129)
++++-+++..+--|+
T Consensus 80 A~l~i~DL~FVVRST 94 (445)
T TIGR03285 80 AGLDIDDLDFVVRST 94 (445)
T ss_pred cCCChhhccEEEecc
Confidence 788877776654443
No 222
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.85 E-value=1.1e+02 Score=22.15 Aligned_cols=27 Identities=11% Similarity=-0.176 Sum_probs=23.4
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
-+++=|+|++.-|-+.|+..+|+++.+
T Consensus 130 ~ivaeDvGG~~gRkI~f~~~tG~v~vk 156 (199)
T PRK13491 130 RCTAHSLGGNRARRIRFWPKTGRVQQM 156 (199)
T ss_pred cEEEEeCCCCCCcEEEEECCCCEEEEE
Confidence 378999999999999999878987764
No 223
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.66 E-value=1.1e+02 Score=21.14 Aligned_cols=27 Identities=7% Similarity=-0.049 Sum_probs=23.1
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
-+++=|+|++.-|-+.|+..+|++.-+
T Consensus 127 ~i~a~dvGG~~gR~i~f~~~tG~v~vk 153 (162)
T PRK13490 127 PILAEDIGGNKGRTMIFDTSDGKVYIK 153 (162)
T ss_pred cEEEEECCCCCCcEEEEECCCCEEEEE
Confidence 378899999999999999878887654
No 224
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.61 E-value=1.1e+02 Score=21.31 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=23.8
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVSH 41 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~ 41 (129)
-+++=|+|++.-|-+.|+..+|+++-+.
T Consensus 130 ~i~a~DvGG~~gR~i~f~~~tG~v~vk~ 157 (167)
T PRK13498 130 HLKAQDLGSTGHRSIIFDLWNGNVWVRH 157 (167)
T ss_pred cEEEEeCCCCCCcEEEEECCCCEEEEEE
Confidence 3688999999999999998789877654
No 225
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.42 E-value=1.1e+02 Score=21.07 Aligned_cols=27 Identities=11% Similarity=-0.086 Sum_probs=23.2
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
-+++=|+|++.-|-+.|+..+|++.-+
T Consensus 120 ~i~a~dvGG~~gR~i~f~~~tG~v~vk 146 (159)
T PRK13495 120 KLVAEDTGGNRARSIEYNIETGKLLVR 146 (159)
T ss_pred cEEEEeCCCCCCcEEEEECCCCEEEEE
Confidence 368899999999999999878887654
No 226
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=31.25 E-value=93 Score=24.05 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=19.5
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSH 41 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~ 41 (129)
...+|+|+-++-+++++. +|++...+
T Consensus 136 laIlDmG~GSTDAsii~~-~g~v~~iH 161 (332)
T PF08841_consen 136 LAILDMGGGSTDASIINR-DGEVTAIH 161 (332)
T ss_dssp EEEEEE-SSEEEEEEE-T-TS-EEEEE
T ss_pred eEEEecCCCcccHHHhCC-CCcEEEEE
Confidence 456999999999999999 89887744
No 227
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=31.08 E-value=42 Score=25.83 Aligned_cols=17 Identities=6% Similarity=-0.126 Sum_probs=14.8
Q ss_pred EEEeCCCCceeEEEEeC
Q psy1582 16 DRLSATYHTSRVLIISA 32 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~ 32 (129)
|.||+|+.++|+..-..
T Consensus 2 iViD~Gs~~~r~G~a~~ 18 (371)
T cd00012 2 VVIDNGSGTIKAGFAGE 18 (371)
T ss_pred EEEECCCCeEEEEeCCC
Confidence 68999999999987665
No 228
>PRK13327 pantothenate kinase; Reviewed
Probab=30.93 E-value=35 Score=25.23 Aligned_cols=17 Identities=0% Similarity=-0.210 Sum_probs=15.3
Q ss_pred EEEeCCCCceeEEEEeC
Q psy1582 16 DRLSATYHTSRVLIISA 32 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~ 32 (129)
+-||+|.|.+|-++++.
T Consensus 4 ~liD~GNSriKwa~~~~ 20 (242)
T PRK13327 4 WLFDLGNSRFKYAPLHG 20 (242)
T ss_pred eeEEcCcchhheEEecC
Confidence 56999999999999994
No 229
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=30.49 E-value=1.5e+02 Score=22.83 Aligned_cols=27 Identities=4% Similarity=-0.123 Sum_probs=21.8
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSH 41 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~ 41 (129)
.-.+.||+|.+.+.++.+- +|.++...
T Consensus 143 ~~~lVVDiG~~~t~i~pv~--~G~~~~~~ 169 (371)
T cd00012 143 TTGLVVDSGDGVTHVVPVY--DGYVLPHA 169 (371)
T ss_pred CeEEEEECCCCeeEEEEEE--CCEEchhh
Confidence 4678999999999998888 47777653
No 230
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=30.47 E-value=1.2e+02 Score=21.54 Aligned_cols=27 Identities=11% Similarity=-0.176 Sum_probs=23.3
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
-+++=|+|++.-|-+.|+..+|+++.+
T Consensus 127 ~i~a~DvGG~~gR~v~f~~~tG~v~~k 153 (184)
T PRK13497 127 PVVGSSTGGEHGRKLEYWPVSGRARQY 153 (184)
T ss_pred cEEEEeCCCCCCcEEEEECCCCeEEEE
Confidence 368899999999999999878988764
No 231
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=29.86 E-value=1.1e+02 Score=17.67 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=14.4
Q ss_pred eEEEEeCCCCcEEEEEEeee
Q psy1582 26 RVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 26 k~~l~d~~~g~iv~~~~~~~ 45 (129)
|+-|.|. +|+++++.++..
T Consensus 47 rV~V~~~-~G~~l~~~~F~V 65 (66)
T PF11141_consen 47 RVEVVDE-DGQVLGSLRFSV 65 (66)
T ss_pred EEEEEcC-CCCEEEEEEEEE
Confidence 6678888 899998776643
No 232
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=29.77 E-value=1.4e+02 Score=23.00 Aligned_cols=29 Identities=3% Similarity=-0.129 Sum_probs=22.7
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSM 43 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~ 43 (129)
.-.+.||+|.+.+.++.+- +|.++.....
T Consensus 143 ~~~lVVDiG~~~t~v~pv~--~G~~~~~~~~ 171 (373)
T smart00268 143 TTGLVIDSGDGVTHVVPVV--DGYVLPHAIK 171 (373)
T ss_pred CEEEEEecCCCcceEEEEE--CCEEchhhhe
Confidence 4578999999999998888 4777765433
No 233
>KOG0930|consensus
Probab=29.62 E-value=81 Score=24.32 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=29.8
Q ss_pred CCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHH
Q psy1582 21 TYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 71 (129)
Q Consensus 21 Gtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 71 (129)
-+..||++=.+. +|++|.-...-|.+..|.+ .+-++|+.+|...+.
T Consensus 331 ~gq~IKACKTe~-DGRvVEG~H~vYrIsA~~~----Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 331 KGQVIKACKTEA-DGRVVEGNHSVYRISAPTP----EEKDEWIKSIKAAIS 376 (395)
T ss_pred CcCeeeeecccC-CceeEeccceEEEeeCCCH----HHHHHHHHHHHHHhc
Confidence 457899999998 8998865444444433322 245668777776654
No 234
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=29.53 E-value=1.4e+02 Score=21.59 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=30.8
Q ss_pred CeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCc
Q psy1582 53 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 96 (129)
Q Consensus 53 g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~ 96 (129)
|....+++++.+.+...++.+...+ ......|..+.+.+.|
T Consensus 167 Gk~~m~~e~i~eNi~a~l~~l~~~~---p~k~~nIksv~iktTM 207 (214)
T PTZ00225 167 GHVEMTEEQLRQNVVMAINFLVSLL---KKNWQNLKSAYIKSTM 207 (214)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhC---CcCCceEeEEEEECCC
Confidence 4456789999999999988887663 2223469999998875
No 235
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=29.32 E-value=84 Score=22.47 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCcceEE
Q psy1582 63 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTV 100 (129)
Q Consensus 63 ~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~~g~v 100 (129)
|+.+...++++..++++.+..|+-|.+|+=++..+|-+
T Consensus 9 w~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pari 46 (192)
T COG2236 9 WEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARI 46 (192)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHH
Confidence 34455555555555554688888888888776655533
No 236
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=28.85 E-value=1.4e+02 Score=20.63 Aligned_cols=26 Identities=12% Similarity=-0.056 Sum_probs=22.6
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
+++=|+|++.-|-+.|+..+|+++-+
T Consensus 123 i~a~dvGG~~gR~i~f~~~tG~v~vk 148 (157)
T PRK13488 123 IVAEDVGGDYGRTVKFDLKTGKVIVR 148 (157)
T ss_pred EEEEEcCCCCCcEEEEECCCCEEEEE
Confidence 67889999999999999878887654
No 237
>PF14239 RRXRR: RRXRR protein
Probab=28.82 E-value=2.1e+02 Score=20.20 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=25.9
Q ss_pred CCCCCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582 7 QAVAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSM 43 (129)
Q Consensus 7 ~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~ 43 (129)
.......+.+|||-|+..+=.++.+. + +++..+..
T Consensus 45 ~~~~~qpi~lgiDpGsk~tGiav~~~-~-~vl~~~el 79 (176)
T PF14239_consen 45 SGSYTQPIRLGIDPGSKTTGIAVVSE-K-KVLWAAEL 79 (176)
T ss_pred CCCcccCEEEEECCCCCeEEEEEEeC-C-EEEEEeEe
Confidence 34445679999999999999999886 4 66655443
No 238
>PTZ00249 variable surface protein Vir28; Provisional
Probab=28.74 E-value=79 Score=26.12 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=39.6
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCCC
Q psy1582 56 EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRFN 129 (129)
Q Consensus 56 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~~ 129 (129)
..|++.++..+..++..++.. + +.+--+|+++.|..+.++=+ -.|+.......-+|.+.+-+.||
T Consensus 416 ~~~~~~~~~~~~~~~~~~l~~-----v--~p~p~~gvsg~~g~l~ll~~--~t~~g~~~~~~~~~~~~i~~~~~ 480 (516)
T PTZ00249 416 TFDTGTIMGTIKGAVSNVLEA-----V--EPVPVLGVSGGMGALYLLLK--YTPIGSLFRRNRRNNQNIPNFFD 480 (516)
T ss_pred cccchhhHHhhhHHHHHhhhc-----c--CCcceeeecccccchheeee--eccchhhhcccccchhhCccccc
Confidence 356788888888888888764 2 44556788887766554432 44555444444444555555543
No 239
>PTZ00452 actin; Provisional
Probab=28.13 E-value=68 Score=25.05 Aligned_cols=18 Identities=6% Similarity=-0.071 Sum_probs=15.9
Q ss_pred EEEEeCCCCceeEEEEeC
Q psy1582 15 RDRLSATYHTSRVLIISA 32 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~ 32 (129)
.+.||+|+..+|++.-..
T Consensus 7 ~vViD~Gs~~~k~G~age 24 (375)
T PTZ00452 7 AVVIDNGSGYCKIGIAGD 24 (375)
T ss_pred EEEEECCCCeEEEeeCCC
Confidence 688999999999998765
No 240
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=27.80 E-value=1.3e+02 Score=24.15 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=26.4
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDIS 46 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~ 46 (129)
++-||+|+-++-.++|. +|.++.....|+.
T Consensus 205 v~lIDiG~GTTdIai~~--~G~l~~~~~ipvg 234 (418)
T COG0849 205 VALIDIGGGTTDIAIYK--NGALRYTGVIPVG 234 (418)
T ss_pred eEEEEeCCCcEEEEEEE--CCEEEEEeeEeeC
Confidence 56799999999999999 5999998888874
No 241
>KOG2201|consensus
Probab=27.80 E-value=59 Score=25.52 Aligned_cols=20 Identities=5% Similarity=-0.069 Sum_probs=17.1
Q ss_pred CeEEEEeCCCCceeEEEEeC
Q psy1582 13 QIRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~ 32 (129)
-..+++|||+|-+|.+-+..
T Consensus 22 ~~~~~~DigGtl~KlvY~s~ 41 (371)
T KOG2201|consen 22 ISHFAMDIGGTLVKLVYFSP 41 (371)
T ss_pred CceEEEecCCcEEEEEEEec
Confidence 45789999999999988775
No 242
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=27.39 E-value=2e+02 Score=22.17 Aligned_cols=28 Identities=14% Similarity=0.001 Sum_probs=22.1
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEE
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHS 42 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~ 42 (129)
..++.||||.-++=.++++ +++++...+
T Consensus 185 ~~ilvIDIG~~TtD~~v~~--~~~~~~~~s 212 (344)
T PRK13917 185 GKVSVIDFGSGTTDLDTIQ--NLKRVEEES 212 (344)
T ss_pred CcEEEEEcCCCcEEEEEEe--CcEEccccc
Confidence 4579999999999999997 577765444
No 243
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=27.37 E-value=1.9e+02 Score=20.83 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=29.1
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCc
Q psy1582 55 AEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 96 (129)
Q Consensus 55 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~ 96 (129)
...+++++.+.+...++.+...+ .-....|..|.+++.+
T Consensus 169 ~~m~~e~l~eNi~avl~~i~~~~---p~g~~~Iksi~lktTm 207 (215)
T PRK04203 169 EDMSPEELAENIDAVLNRIESKL---EKGRQNIKSVYVKTTM 207 (215)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhC---ccccccEEEEEEECCC
Confidence 45789999999999888887652 2224579999998875
No 244
>PRK11617 endonuclease V; Provisional
Probab=26.71 E-value=2.2e+02 Score=20.95 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=26.6
Q ss_pred CeEEEEeCCCCc------eeEEEEeCCCCcEEEEEEeeeccccCC-CC
Q psy1582 13 QIRDRLSATYHT------SRVLIISALTQEEVVSHSMDISTISPQ-EG 53 (129)
Q Consensus 13 ~~~lgiDiGtt~------ik~~l~d~~~g~iv~~~~~~~~~~~~~-~g 53 (129)
.++.|+|++-.. .-++++|-.+++++.......+...|. ||
T Consensus 30 ~~VaGvDvsy~~~~~~~~aa~Vvl~~~~~~~v~~~~~~~~~~~PYIPG 77 (224)
T PRK11617 30 RLIAGADVGFEQGGEVTRAAIVVLKYPSLELVEYQVARIATTMPYIPG 77 (224)
T ss_pred cEEEEEEEEEcCCCceEEEEEEEEECCCCcEEEEEEEEeccCCCcCcc
Confidence 689999997632 334556754778887776655555553 44
No 245
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=26.49 E-value=1.5e+02 Score=21.60 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=22.3
Q ss_pred EEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582 15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI 45 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~ 45 (129)
.+-+|+|+..+-+.++. .|+++.....++
T Consensus 110 ~~vvDiGggtt~i~i~~--~G~i~~~~~~~~ 138 (239)
T TIGR02529 110 GAVVDVGGGTTGISILK--KGKVIYSADEPT 138 (239)
T ss_pred cEEEEeCCCcEEEEEEE--CCeEEEEEeeec
Confidence 47899999999888887 477777655444
No 246
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=25.72 E-value=1.4e+02 Score=23.00 Aligned_cols=30 Identities=3% Similarity=-0.122 Sum_probs=22.4
Q ss_pred CeEEEEeCCCCceeEEEEeCCCCcEEEEEEee
Q psy1582 13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMD 44 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~ 44 (129)
..++.||+|+.++..+++.. |.++.....+
T Consensus 196 ~~~~vvDiG~gtt~i~i~~~--g~~~~~~~i~ 225 (371)
T TIGR01174 196 LGVCLIDIGGGTTDIAVYTG--GSIRYTKVIP 225 (371)
T ss_pred CCEEEEEeCCCcEEEEEEEC--CEEEEEeeec
Confidence 34788999999999999974 6666544333
No 247
>PTZ00280 Actin-related protein 3; Provisional
Probab=25.37 E-value=76 Score=25.02 Aligned_cols=18 Identities=0% Similarity=-0.186 Sum_probs=15.4
Q ss_pred EEEEeCCCCceeEEEEeC
Q psy1582 15 RDRLSATYHTSRVLIISA 32 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~ 32 (129)
.|.||.|+.++|++.-..
T Consensus 6 ~iViD~GS~~~k~G~ag~ 23 (414)
T PTZ00280 6 VVVIDNGTGYTKMGYAGN 23 (414)
T ss_pred eEEEECCCCceEeeeCCC
Confidence 689999999999987653
No 248
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=25.29 E-value=1.1e+02 Score=21.48 Aligned_cols=27 Identities=15% Similarity=0.420 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 66 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 66 i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
+.+.++++++. +.+.+.+|.-||+|+.
T Consensus 3 ~~~~~~El~~~---a~l~~g~i~VvGcSTS 29 (172)
T PF04260_consen 3 LRQALEELLEQ---ANLKPGQIFVVGCSTS 29 (172)
T ss_dssp HHHHHHHHHHH---S---TT-EEEEEE-HH
T ss_pred HHHHHHHHHHh---cCCCCCCEEEEeeeHH
Confidence 45566677766 6778889999999975
No 249
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.96 E-value=1.5e+02 Score=21.65 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=23.4
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
-+++=|+|++.-|-+.|+..+|++.-+
T Consensus 154 ~Iva~DvGG~~gRki~f~~~tG~v~vk 180 (213)
T PRK13493 154 NVVAQDLGGAQPRKLLFDPQTGQAWVK 180 (213)
T ss_pred cEEEEeCCCCCCcEEEEECCCCEEEEE
Confidence 378899999999999999878987764
No 250
>PTZ00445 p36-lilke protein; Provisional
Probab=24.28 E-value=42 Score=24.58 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=34.3
Q ss_pred CceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEE--CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 23 HTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQ--DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 23 t~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
..||++++|. +..++..++- ||... +...+...+...++.++.++++.|+ .|.-+-+|-+
T Consensus 41 ~GIk~Va~D~-DnTlI~~Hsg---------G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I---~v~VVTfSd~ 102 (219)
T PTZ00445 41 CGIKVIASDF-DLTMITKHSG---------GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNI---KISVVTFSDK 102 (219)
T ss_pred cCCeEEEecc-hhhhhhhhcc---------cccCCCcchhhhhccCCHHHHHHHHHHHHCCC---eEEEEEccch
Confidence 4689999999 7888875443 33222 3445555555666666666544443 2444444443
No 251
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=24.02 E-value=69 Score=24.73 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=15.8
Q ss_pred eEEEEeCCCCceeEEEEeC
Q psy1582 14 IRDRLSATYHTSRVLIISA 32 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~ 32 (129)
-.|.||+|+.++|++.-..
T Consensus 5 ~~vViD~Gs~~~k~G~age 23 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGE 23 (393)
T ss_dssp SEEEEEECSSEEEEEETTS
T ss_pred CEEEEECCCceEEEEECCC
Confidence 3688999999999998543
No 252
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.93 E-value=1.7e+02 Score=21.66 Aligned_cols=27 Identities=11% Similarity=-0.073 Sum_probs=23.5
Q ss_pred eEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582 14 IRDRLSATYHTSRVLIISALTQEEVVS 40 (129)
Q Consensus 14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~ 40 (129)
-+++=|+|++.-|-+.|+..+|+++-+
T Consensus 140 ~IvaeDvGG~~gRkV~f~~~TG~v~Vk 166 (233)
T PRK13489 140 RITAEDLQGVHPRKVAFMPRTGRAMVK 166 (233)
T ss_pred cEEEEeCCCCCCcEEEEECCCCEEEEE
Confidence 378899999999999999878987765
No 253
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=22.60 E-value=2.2e+02 Score=20.62 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=29.7
Q ss_pred CeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCc
Q psy1582 53 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 96 (129)
Q Consensus 53 g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~ 96 (129)
|....+++++.+.+...++.+...+++ | ...|..|.+.+.+
T Consensus 169 G~~~~~~e~l~eNi~avl~~i~~~~~k-g--~~~Iksv~lktTm 209 (216)
T PTZ00029 169 GNVEMTEEQLRQNIVLSINFLVSLLKK-N--WQNIKTLHIKSTM 209 (216)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcc-c--cccEeEEEEECCC
Confidence 334578999999999988887765321 1 2569999988765
No 254
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=22.58 E-value=4.2e+02 Score=21.68 Aligned_cols=24 Identities=8% Similarity=-0.171 Sum_probs=20.3
Q ss_pred CCeEEEEeCCCCceeEEEEeCCCC
Q psy1582 12 TQIRDRLSATYHTSRVLIISALTQ 35 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~l~d~~~g 35 (129)
...++.+|+|++++-+.++...+|
T Consensus 187 ~~~vlv~D~Gggt~dvs~~~~~~~ 210 (602)
T PF00012_consen 187 GKTVLVVDFGGGTFDVSVVEFSNG 210 (602)
T ss_dssp EEEEEEEEEESSEEEEEEEEEETT
T ss_pred ccceeccccccceEeeeehhcccc
Confidence 568899999999999999997344
No 255
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=22.43 E-value=2.1e+02 Score=19.60 Aligned_cols=59 Identities=12% Similarity=-0.001 Sum_probs=37.9
Q ss_pred EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582 16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 76 (129)
Q Consensus 16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 76 (129)
+.|-+|.-.+...+|.. .+.+.+-...-.+.+..-||.. -.|++++..+..++..+.+.
T Consensus 79 iViA~GaCa~~GGIf~~-~~~v~gpvd~viPVDv~IPGCP-P~P~~il~g~~~al~~~~k~ 137 (148)
T COG3260 79 IVIAVGACALSGGIFKD-SYSVWGPVDKVIPVDVEIPGCP-PRPEAILAGLVAALGKLEKK 137 (148)
T ss_pred EEEEEcccccCCceecc-cccccccccceeEeeeEcCCCC-CCHHHHHHHHHHHHHHHHHh
Confidence 45778998888889987 6655543222222222223433 36899999998888887764
No 256
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=22.29 E-value=1.1e+02 Score=19.40 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582 65 AVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95 (129)
Q Consensus 65 ~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 95 (129)
.+.++++++++. +++++++|..|-..+.
T Consensus 26 ~~~~~i~~al~~---agi~~~~I~~i~~hg~ 53 (119)
T PF02801_consen 26 ALARAIRRALAD---AGISPEDIDYIEAHGT 53 (119)
T ss_dssp HHHHHHHHHHHH---HTS-GGGEEEEE----
T ss_pred HHHHHHHHHHhh---hccccccceeeeeecc
Confidence 345556677666 6888999987765543
No 257
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.29 E-value=4.2e+02 Score=21.38 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=42.1
Q ss_pred CeEEEEeCCCCceeEEEEeC--CCCc--EEEEE-EeeeccccCCCCe---------EEECHHHHHHHHHHHHHHHHHHHH
Q psy1582 13 QIRDRLSATYHTSRVLIISA--LTQE--EVVSH-SMDISTISPQEGW---------AEQDPMEILQAVQTTMDRAIEKLS 78 (129)
Q Consensus 13 ~~~lgiDiGtt~ik~~l~d~--~~g~--iv~~~-~~~~~~~~~~~g~---------~~~~~~~~~~~i~~~~~~~~~~~~ 78 (129)
.++..|.+|.|.+|++|.-. ++|+ ++.+. +..-+...|++|- .+-.-+.+-+.+.+.+.+++++
T Consensus 4 yiVASVElGNTTTKcIltaTnl~tgktYiinKtV~MTRDVR~Pk~gEevFG~Tl~g~eLTrEsV~elVrdtl~e~~k~-- 81 (448)
T PF09887_consen 4 YIVASVELGNTTTKCILTATNLETGKTYIINKTVRMTRDVRPPKPGEEVFGKTLWGVELTRESVAELVRDTLLESHKK-- 81 (448)
T ss_pred EEEEEEEecCceeeEEEEeeccCCCcEEEEeeeeeeeccCCCCCCCccccceeecCccccHHHHHHHHHHHHHHHHHH--
Confidence 35678999999999998764 2332 22221 1111233455542 2233444555555555555554
Q ss_pred hCCCCCC-CeeEEEEe
Q psy1582 79 AHGLSRD-DIVTLGIT 93 (129)
Q Consensus 79 ~~~~~~~-~I~~Igis 93 (129)
++++-+ ++..+--|
T Consensus 82 -A~l~i~~DL~FVVRS 96 (448)
T PF09887_consen 82 -AHLDIKKDLDFVVRS 96 (448)
T ss_pred -cCCCccccceEEEee
Confidence 777766 65555433
No 258
>PTZ00466 actin-like protein; Provisional
Probab=22.11 E-value=89 Score=24.49 Aligned_cols=18 Identities=0% Similarity=-0.241 Sum_probs=15.8
Q ss_pred EEEEeCCCCceeEEEEeC
Q psy1582 15 RDRLSATYHTSRVLIISA 32 (129)
Q Consensus 15 ~lgiDiGtt~ik~~l~d~ 32 (129)
.|.||.|+.++|++.-..
T Consensus 14 ~iViD~GS~~~K~G~ag~ 31 (380)
T PTZ00466 14 PIIIDNGTGYIKAGFAGE 31 (380)
T ss_pred eEEEECCCCcEEEeeCCC
Confidence 588999999999998764
No 259
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=21.77 E-value=2.7e+02 Score=20.32 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=26.4
Q ss_pred CCeEEEEeCCCC---cee--EEEEeCCCCcEEEEEEeeeccccCC-CCe
Q psy1582 12 TQIRDRLSATYH---TSR--VLIISALTQEEVVSHSMDISTISPQ-EGW 54 (129)
Q Consensus 12 ~~~~lgiDiGtt---~ik--~~l~d~~~g~iv~~~~~~~~~~~~~-~g~ 54 (129)
-.+++|+|++-. ..+ ++++|..+++++.......+...|. ||+
T Consensus 28 v~~vagvDvsy~~~~~~~aa~Vv~~~~~~~vie~~v~~~~~~~PYIPGf 76 (212)
T COG1515 28 VRTVAGVDVSYEDGERGRAAAVVLDYPDLEVIETAVVRGPVSFPYIPGF 76 (212)
T ss_pred cceEEEEEEEecCCCeEEEEEEEEEcCCCceEEEEEEecccccCcccch
Confidence 468999999644 333 3445544788888766555554453 453
No 260
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=21.76 E-value=2.8e+02 Score=20.37 Aligned_cols=51 Identities=12% Similarity=0.177 Sum_probs=32.8
Q ss_pred CeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCcceEEEEeC
Q psy1582 53 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 104 (129)
Q Consensus 53 g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~~g~v~~d~ 104 (129)
|....+++++.+.+...++.+....+ .+....-|..+.+++.|.=-+.+|.
T Consensus 175 G~~~m~~~~l~eNi~a~l~~i~~~~p-~~~kg~~ik~v~issTMGp~v~i~~ 225 (229)
T CHL00129 175 GKSNFTEEDLLENLQAIYESIEQNRP-SGVKGKYWKSFYICSTMGPSIQIDI 225 (229)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHhCc-ccccCceEEEEEEECCCCCCEEecc
Confidence 44567889999999988887765421 1222236888888877543345554
No 261
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=21.75 E-value=1.9e+02 Score=17.11 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=19.9
Q ss_pred EEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582 17 RLSATYHTSRVLIISALTQEEVVSHSM 43 (129)
Q Consensus 17 giDiGtt~ik~~l~d~~~g~iv~~~~~ 43 (129)
-++-..+.+++.|+|. +|++|.+...
T Consensus 19 ~l~~~a~~v~v~I~d~-~G~~V~t~~~ 44 (81)
T PF13860_consen 19 TLPEDADNVTVTIYDS-NGQVVRTISL 44 (81)
T ss_dssp EECSSCEEEEEEEEET-TS-EEEEEEE
T ss_pred eCCCcccEEEEEEEcC-CCCEEEEEEc
Confidence 3666777899999999 9999976544
No 262
>PHA02535 P terminase ATPase subunit; Provisional
Probab=21.42 E-value=5.1e+02 Score=22.00 Aligned_cols=66 Identities=9% Similarity=0.078 Sum_probs=36.1
Q ss_pred CCeEEEEeCCCCceeEE--EEe---CCCCcEE-EEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy1582 12 TQIRDRLSATYHTSRVL--IIS---ALTQEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD 85 (129)
Q Consensus 12 ~~~~lgiDiGtt~ik~~--l~d---~~~g~iv-~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (129)
..+++|+|+|.+.=.++ |+- . .|... ......+. ..+-+ ...+.|+++... .
T Consensus 402 ~~VwiG~D~sr~~D~t~lvVvapp~~-~g~kfrvler~~~~---------g~~f~----~QA~~I~~l~~r--------y 459 (581)
T PHA02535 402 REVWVGYDPAHTGDSAGLVVVAPPAV-PGGKFRVLERHQWR---------GLDFA----EQAAEIRKLTEK--------Y 459 (581)
T ss_pred ceEEEeeCCCCCCCCeEEEEEecCcc-cCCeEEEEEEEEEc---------CCCHH----HHHHHHHHHHHH--------c
Confidence 57999999998754433 332 2 23222 22222221 12333 334445566654 5
Q ss_pred CeeEEEEecCcceE
Q psy1582 86 DIVTLGITNQRETT 99 (129)
Q Consensus 86 ~I~~Igis~~~~g~ 99 (129)
+|..|||...|-|-
T Consensus 460 nV~~I~ID~TGiG~ 473 (581)
T PHA02535 460 NVTYIGIDATGIGA 473 (581)
T ss_pred CceEEEEcCCCCCH
Confidence 68889998877554
No 263
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=20.71 E-value=3.3e+02 Score=19.59 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=32.4
Q ss_pred CCeEEEEeCCCC----cee--EEEEeCCCCcEEEEEEeeeccccCC-CCeEEECHHHHHHHHHHH--HHHHHHH
Q psy1582 12 TQIRDRLSATYH----TSR--VLIISALTQEEVVSHSMDISTISPQ-EGWAEQDPMEILQAVQTT--MDRAIEK 76 (129)
Q Consensus 12 ~~~~lgiDiGtt----~ik--~~l~d~~~g~iv~~~~~~~~~~~~~-~g~~~~~~~~~~~~i~~~--~~~~~~~ 76 (129)
-.++.|+|+.-. ... +++++-.+++.+......+....|. || +-++.+. +.+++++
T Consensus 25 ~~~I~gvDiS~~~~~~~~vaa~Vv~~~~~~~~~~~~~~~~~~~~PYIPG---------~LafRE~p~l~~~~~~ 89 (208)
T cd06559 25 VRLVAGVDVSYKKDGDLAVAAAVVLDYPDLEVVETAVAVGEVTFPYIPG---------LLAFREGPPLLEALEK 89 (208)
T ss_pred ccEEEEEEeeeccCCCeEEEEEEEEECCCCcEEEEEEEEEecCCCCcch---------hHHHhhHHHHHHHHHh
Confidence 358999999754 222 3344422578887777666655443 22 3345555 5555555
No 264
>PHA02754 hypothetical protein; Provisional
Probab=20.25 E-value=1.9e+02 Score=16.64 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeeEEEEecCcceEEEEeCCCCcccccceeecC
Q psy1582 65 AVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGL 118 (129)
Q Consensus 65 ~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~~g~v~~d~~~g~~~~~~i~w~d 118 (129)
.+.+.++++-..|+++|+--.+|.+|-.|+ .-++.+-.+ +..+ .++|..
T Consensus 15 ~Fke~MRelkD~LSe~GiYi~RIkai~~SG--dkIVVi~aD-~I~i--~ls~Te 63 (67)
T PHA02754 15 DFKEAMRELKDILSEAGIYIDRIKAITTSG--DKIVVITAD-AIKI--ELSETE 63 (67)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEEEEEecC--CEEEEEEcc-eEEE--EEEeee
Confidence 455666666555555787777899888775 446666665 4432 235554
Done!