RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1582
(129 letters)
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 74.8 bits (183), Expect = 5e-18
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 25 SRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR 84
SR +++ + + I P+ GW E DPMEI +T+ + K +S
Sbjct: 15 SRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAK---ADISS 70
Query: 85 DDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
D I +GITNQRETT+VW+ TG+P+YNAI
Sbjct: 71 DQIAAIGITNQRETTIVWEKETGKPIYNAI 100
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 68.6 bits (167), Expect = 9e-16
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 25 SRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR 84
SR +I +++ S + P+ GW E + EI +VQ+ + A + G+
Sbjct: 13 SRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRP 68
Query: 85 DDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLR 119
+ I +GITNQRETTVVWD TG+P+ NAI R
Sbjct: 69 EAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSR 103
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 28.8 bits (63), Expect = 0.17
Identities = 12/57 (21%), Positives = 17/57 (29%)
Query: 54 WAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 110
W + A + +E L + +S DD VV D TG
Sbjct: 252 WVYDLKSKQRVARWDLAQQKVEPLVSIQVSEDDKPLFYGLTATSDLVVMDARTGALQ 308
>d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a,
transpeptidase domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 385
Score = 27.4 bits (59), Expect = 0.60
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 66 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 110
V T +D+ +K + D+ V + + + D++ G+ +
Sbjct: 33 VYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVI 77
>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
{Bacillus anthracis [TaxId: 1392]}
Length = 509
Score = 26.5 bits (58), Expect = 1.3
Identities = 11/63 (17%), Positives = 20/63 (31%)
Query: 44 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 103
++ I Q E D + L +G+ R T G + + ++
Sbjct: 210 SLTEIKKQIPQKEWDKVVNTPNSLEKQKGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDR 269
Query: 104 LNT 106
LN
Sbjct: 270 LNE 272
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 26.0 bits (55), Expect = 1.4
Identities = 12/110 (10%), Positives = 31/110 (28%), Gaps = 4/110 (3%)
Query: 12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 71
+ SA S + Q + + + + + + +
Sbjct: 266 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHK 325
Query: 72 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIV 121
++ ++S + T +WD+ + E + L+IV
Sbjct: 326 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL----KDLKIV 371
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 156
Score = 24.9 bits (54), Expect = 2.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 99 TVVWDLNTGEPLYNAIEQGLRIVDCGSGRF 128
T V+D +TGE L + E+G ++ G
Sbjct: 92 TRVFDADTGELLADLTEEGQTVLVARGGAG 121
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 24.1 bits (51), Expect = 4.7
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 37 EVVSHSMDISTISPQEGWAEQDPME 61
E+V +++ +E A D
Sbjct: 15 ELVEAERHTPSLAAEEVQALLDARA 39
>d2oyoa1 a.152.1.3 (A:10-195) Uncharacterized protein Dgeo_1446
{Deinococcus geothermalis [TaxId: 68909]}
Length = 186
Score = 24.0 bits (51), Expect = 6.1
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 50 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 90
+E ++ + +E L A GL I+ L
Sbjct: 116 EREQALAAYAEKLTRHPAEVTAADLEPLRAVGLDDHQIMEL 156
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 71
Score = 22.7 bits (49), Expect = 9.6
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 70 MDRAIEKLSAHG---LSRDDIVTL 90
MD+ IE L L+ D+ L
Sbjct: 48 MDKCIEVLKEKKVDLLAASDLYKL 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.371
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,491
Number of extensions: 17499
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 17
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.8 bits)